AAD AAM AAS ACC ACG AEAa AEAb AEN AI AMmA AOG APX APXhard ARN ARTMAP ASI ASM ATS Abhijit Abul Achaz Acknowledgement AdaBoost Adjacencies Admanit Adrian Adrien Aeling Affymetrix Agarwal Agius Aittokallio Ajit Akshay Alain Alber Alekseyev Alexandr Alexei Alhajj AlignACE Alissa Allali Allman Altman Aluru Aman Amar Ana Anagnostopoulos Anant Anastassiou Andr Andreas Andreoli Andrzej Ankur Anneke Anshul Antoni Anupam Apostolos Arlindo Arndt Arribas Ashbya Ashwin Astola Au Aug Augusto Avants Avital Axenopoulos Ayala Ayumi Azuaje B BAB BBD BCGS BDTNP BL BLASTGRES BLASTN BLASTP BLOSUM BLS BLSTM BMG BMS BNPP BPD BRNN BRTSS BSI BSM BWT Baca Backpropagation Bafna Bajaj Baldi Balla Bannai Bansal Bao Baolin Barak Barash Barzuza Basecalling Beckmann Bedem Beebe Benini Berard Bereg Bergeron Berman Bernd Bernhard Bernt Bi BibNet BibTeX Biclustering Biclusters Biggin Biing Bilu Binh Bio Bioconductor Biogeography Bioinformatics Biomolecular Biopolymer Bittner Biyani Bj Bjarni Blastp Blazewicz Blelloch Blin Blisard Boaz Bocker Boden Bogani Bogdan Bonizzoni Bontempi Bordewich Boscolo Brachmann Braga Breitling Brinza Britta Bruijn Brun Buhler Bui Bulent Burke C CAA CAC CAE CBA CBG CBM CBR CCN CCR CCS CDT CFN CGD CGM CHC CHN CISA CLEs CNS CODEN COMAR CPD CPLEX CPP CPS CRC CRP CSC CSG CSI CST CTM CTR CXCR Cai Caldwell Cameron Campbell Candida Cannane Cannarozzi Cardona Carlo Carlos Carrer Carrere Carvalho Casadio Cascella Casimir Cedric Celine Cesar Cesare Chai Chalco Chan Chandrajit Chaolin Charless Chaturvedi Chaudhari Chauve Chawla Cheng Chengbang Chengpeng Cheryl Chiang Chiara Chieh Chih Chihchau Chinh Cho Choi Chong Christina Christinat Christophe Chromosomes Chu Chunfang Chung Chunmei Cickovski Cigdem Ciliax Ciocchetta Ciona Civera Co Coclustering Codon Coexpression Colin Comembership Condorcet Congdon Contou Cooperativity Coreceptor Corrado Corrales Corynebacterium Costa Cottret Covarion CpG CreI Cris Cristina Crochemore Cruz Cryo Csuros Cui Cytogenetic D DCB DCO DDE DDK DEGs DEM DGN DMH DMP DMR DMT DOI DPA DPP DRB DRP DSD DTS Daming Danziger Daoutidis Daras Dario Dasigi Davila Dawy De DePace Degui Della Demir Denis Derek Deschenes Dezulian Dhamdhere Dhanik Dhillon Di Diaz Diekmann Dimitrios Dimitris Dingledine Diploid Dirk Dondi Dong Dror Duhong Dumitru E EA EAA EAC EAE EAI EAs ECIST EDH EDN EDS EE EEI EGS EIC EKF ELC ELCS EM EM's EMG EMatch EOK ESS EST EUR Eagu Edmond Eduardo Eigenmaps Elchanan Eleazar Elena Elias Elo Eng Eran Erchin Erkan Eskin Eukaryotic Eulenstein Ewa Exocytosis Eyke F FAO FAS FASIC FAX FCG FCM FFY FMG FMK FPA FRP FSG FTD FTI Fabio Farahnaz Fariselli Faruck Faruk FastR Federica Feng Fenglou Fernandes Fernandez Ferrante Fertin Filen Filippo Fogel Foulds Fowlkes Francesc Freitas Fri Fu Fujarewicz Fumei Furlanello Furletova G GAMI GAMI's GBO GBPTT GCI GCM GCU GDP GED GEI GEIa GEIb GEW GFN GGA GMA GMM GMR GNA GP GRB Gabor Gambette Gambin Ganapathy Ganeshkumar Gao Gapped Gardy Gasbarra Gascuel Gaskins GeRNAMo GenBank Genome Genomes Genomic Genomics Genovese Geok Georgios Geraci Gerardo Gerassimos Gergely Gesine Ghahramani Giancarlo Gianluca Giegerich Gil Gina Girolami Giuseppe Glasmachers Glazier Glimm GoStats Goebel Goeffon Gondro Gonnet Goodson Goutsias Gr Gramm Gridding GroEL Grossi Grunewald Guanfeng Guang Guillaume Guillermo Gultekin Gunther Guo Guohua Guohui Gupta Guruceaga Gusev Gusfield Gustafsson H HB HCA HCK HCR HDA HIV HMM HMMERHEAD HMMs HNT HOMSTRAD HSG HSP HTL Haas Hadamard Haeseler Hagenauer Hai Haim Haixu Haiying Halldorsson Halperin Hamann Handl Hannenhalli Hannu Hao HapMap Haplotype Haplotyping Harel Hasan Hautaniemi Hawrylycz Haynor Heber Hecht Heikki Hein Helaine Hendriks Hendy Hentschel Hershkovitz Hidde Hideo Hiroshi Hiroto Hitoshi Hoang Hochsmann Hodgkin's Hofacker Homologues Hongwei Hongyu Hornquist Hsiang Hsiao Hsieh Hsien Hu Huai Huang Hubbard Hubbard's Huber Hui Huidong Huilin Huiru Hullermeier Hulsman HumanGenome Humayun Huson Hybridization Hyuk Hyun Hyyro IAA IAR ICA ICG ICM IEDM IEN IGA IGF IGR IHF IIA ILOG ILP IMN INA IPA IPC IPO IPP IPPH ISA ISH ISL ISO ISP ISSN ITCBCY ITE ITP Ian Iba Iersel Igel Ignacio Ilya Imbalanced Inbal Inderjit Inge InterPlay Internet Ioan Ishii Isomap Istrail Itsik Ivo Ivry Izaguirre J JCP JMB Jaakko Jacek Jagath Jahangheer Jaime Jakob Janardan Janne Jansen Jari Jasmin Jens Jeong Jia Jian Jiang Jianlin Jianmin Jie Jieping Jieun JigCell Jin Jinbo Jing Jingfen Jinjin Jinling Jinmiao Jitendra Joachim Jonassen Jong Josepha Jotun Jue Juha Julien Jun Junfeng Jung Junhyong Jurman K KDEM KNN KOG Kadirkamanathan Kalman Kanaan Kao Kaski Kasprzak Katharina Kato Kaznessis Kececioglu Kedar Keedwell Keich Keijsper Kelk Kell Kemeny Kenta Keong Keranen Keren Kikuya Kimberly Kimmel Kimura Kimura's Kinghorn Klaere Klebe Klopper Kluyveromyces Knuuttila Kok Kolodny Korodi Kou Koushnir Kovalev Kovalyov Kreiswirth Kresimir Kristen Kristin Krzanowski Krzysztof Kuan Kucherov Kuhn Kulikowski Kumar Kundaje Kung Kuo L LCB LLE LPD LSC LSCs LSS LTP LaTeX Labarre Lacroix Lahesmaa Lahti Lam Lamers Lancia Landsberg Langevin Laplacian Lasker Lasota Latombe Lau Laurent Layne Le Leen Legionella Lei Lein Lena Lenwood Leong Lerner Letinic Leung Lev Li Li's Liang Liao Lin Linder Linder's Linearization Ling Linz Lipniacki Lipo Liu Llabr Llabres Loi Lombardi Lonardi Lones LoopTK Loredana Loren Louxin Lozano Lu Luay Luca Luciano Ludovic Luengo Luis Luo Lusheng Lymphomas Lyngso M MBL MCC MCE MCEMDA MCMC MCU MDT MED MEME MFE MFS MGA MGWT MIL MLF MLP MLST MMN MMNs MNS MP MPA MPN MPPH MPT MQC MRM MSE MSG MSS MSSC MSSRCC MST MSTs MVGPC MWC Mabrouk Madabhushi Madeira Magnus Maitra Mak Makinen Malik Malmberg Mamitsuka Mandoiu Manuel Marc Marcel Marco Marek Margara Maribel Markup Marrie Marta Marz Masayuki Mato Matsen Matthias Matthieu Matti Mattingly MaxConf Maxime Medri Meenakshi Meinicke Meitinger Mena Merc Merce Mercer's Merkle Merler Mersch Messeguer Methylation Metzler Michal Michel Micheli Microarray Middendorf Mihail Mika Mikael Mikhail Miklos Min Minh Mitra Miyano Mohammed Mon Moncho Monte Morcos Moret Morphogenesis Moshe Mossel Moulton Muchnik Mueller Mukherjee Mukul Multicategory Multiclass Multidrug Multimeme Multimodal Multiobjective Multipartite Multiscale Multiseed Mumcuo N NAC NBI NBP NBT NDH NF NGW NHL NLS NMR NNI NP NRE NRS Nadia Nagarajan Naidich Nakai Nakhleh Naoto Narasimhan Narayanan Nardini Naren Narendra Nasimul Nathalie Nava Navathe Nelesen Neri Neuroinformatics Ng Nguyen Nico Nicolas Nikkila Nils Noe Noman Nonbinary Noncoding Nov Novo Nussinov O OAB OAI OCM OED OEE OMS OPSM OVO OVerlap Oba Ogul Oleg Oligo Oliveira Olivier Ollikainen Olman Omer Ong Oranit Ortholog Orthologous Osman Ozy P PAE PCA PCC PCM PCR PCX PDB PDF PDS PDZ PIB PLDE PMF PMR PMS PMSprune PNB PNM POSTGRESQL PPP PPS PROSITE PRX PSN PSO PSP PSR PSS PSSM PTN PWM Padolina PairProSVM Pande Pankaj Paola Pardi Pathak Pavel Pe'er Pedigrees Pellegrini Peng Petros Petteri Pevzner Pfeifer Phaedra Philippe Phillip Phylogenetic Piero Pietro Pinter Piotr Pirinen Pisanti Plasmodium Plouhinec Podhorski Podtelezhnikov PointCloudXplore PoissonHC PoissonS Polat Pollastri's Polymorphism Ponzoni Popescu PositionSpecific Possibilistic PpoI Pravesh Preclustering PredLOC Preparata Priami Prodromos Propper Proteomics Przytycka Pseudoknots PubMEd Q QBP QCQP Qi Qian Qiang Qing Qiu Quaglia Quang Quek R RAC REA RF RFE RL RM RMD RMSD RNA RNAs RNN ROC RPT RRN RSD RSP RTS Radhakrishnan Raffaele Raffaella Ragan Raghavan Raghunathan Rahmatpanah Rainer Raj Rajanikanth Rajapakse Rajasekaran Rajiv Ramachandran Ramakrishnan Ramaswamy's Randal Ranjan Rao Ravi Recalibration Reconstructibility Reczko Reda Reinders Reinert Reinhardt Rengaswamy Repeatoire Resch Riccardo Ridder Riitta Rita Rizzi RnaPredict Roch Rocha Roded Rokhlenko Rong Roos Rossell Rossello Rother Roychowdhury Roytberg Rubel Rubio Rueda Ruey Rui Runsheng Runxuan S SAH SANN SAR SAS SBML SCP SDM SDS SGN SGR SHR SIH SJ SLM SLP SMN SMR SNP SNP's SNPs SNPsaccount SOV SPD SPDP SPG SPM SPP SPR SPSP SPT SPXGA SRF SRP SS SSP SSS STA SVM SVMs SWISSPROT Sabatti Saccharomices Saccharomyces Sadot Sagi Sagot Saigo Salemi Sammeth Sampsa Sanguthevar Sanjay Sanjit Sankoff Sanna Sapiro Saratchandran Sarawan Sarkis Satish Satoru Satya Sayan Scheid Schliep Schnable Schonhuth Scornavacca Sebastien Segura Semisupervised Semple Senear Sep Serafini Sergey Serita Serpedin Severine Sevilla Sevon Shackney Shaffer Shahar Shaik Shamir Shamkant Shannon Shaojie Sharan Shatsky Shen Shi Shibin Shigeyuki Shinn Shinohara Simin Simone Sindhu Sinha Sinkkonen Sioson Sipper Sjahputera Skeletonization Slawomir Snir Snoeyink Sodt Soile Solovay's Sorin Sotiropoulos Spa Spang Spatio SpeedHap Spillner Spreadsheet Sridhar Sridharakumar Srinath Srinivas Stadler Stefan Stefanie Stefano Steffen Steinhoff Stephane Stott Stougie Stoye Strintzis Subcellular Sudha Sundararajan Sunderraman Sungroh Supertrees Susanna Swamidass Swierniak Sy SynPAM Szczurek T TBR TCBB TCIP TDS TF TFs TGQ TM TMB TRL TSA TSP TTP TVB Tabus Takeda Tamar Tamir Tandy Tannenbaum Tannier Taoyang Tel Tero Th Thach Thetwo Thireou Tholse Thu Tian Tien Tilmann Timme Tobias Toivanen Toivonen Tomasz Toomre Topon Tor Trans Transcriptional Translocation Treangen TreeDT Treelength Trent Trevor Trias Tseng Tuan Tue Tuller Tyrrell Tzovaras Tzvika U UAR UDT UIP ULDA UMC UNC UPM URL UT UUD Ukelson Unicyclic Unidentifiable Unsupervised Upreti Uri V VCD Vadigepalli Valiente Varghese Vashist Vass Vassilios Vassura Vedova Veli Venu Vesa Vialette Vidya Vidyadharan Vignes Vijay Vijaya Vikas Vinciotti Vineet Vinh Visakan Viterbi Voss Vwani W WABI WM WW WWW WWs Wachmann Wai Warnow Wavelet Wehe Wei Weichuan Wen Wentao Wenyuan Wernicke Weskamp Wiese Willson Wittler Witwer Wojtek Wolbachia Wolfson Wong Wongsa Wu Wuchty Wunsch X XOR Xian Xiang Xiaodong Xiaohua Xiaohui Xiaolin Xiaowen Xiaoye Xie Xin Xing Xiong Xiuzhen Xu Xue Xuegong Xuesong Xueyi Y Ya Yan Yann Yanni Yanxiong Yao Ye Yeasin Yener Yeshaya Yew Yi Yiannis Yijuan Ying Yinglei Yishai Yoan Yonatan Yong Yongjin Yongjing Yoon Yossi Yu Yuan Yuanyi Yuchun Yufeng Yukinawa Yun Yurong Yushkevich Z Zaher Zaky Zana Zarpalas Zea Zelikovsky Zeng Zeyun Zhang Zhao Zhen Zheng Zhi Zhong Zhu Zidong Ziv Zong Zoubin abbrev ack acknowledgement acm actives al alla aminoacids analyse aniuc anking antiretroviral approximability apr aureus autosomal b basecaller basecallers basecalling bault beNP beebe bibdate bibmods bibnames bibsort bibsource bicluster bicluster's biclustering biclusters binormalization bio biodiversity bioengineering bioinformatical bioinformatics biomarkers biomolecular biot biotechnology blstm bytepacked byvolume c cDNA capsid cerevisiae cfm chemokine ching chromosomal chromosome chromosomes chsmann co codetable codon coexpressed coexpression colocalized colocated conflated connectivities coregulated cryo cs cse curated cytogenetic cytoplasmic d dS dataset datasets datatype de deJong degeneracy desktop dimerization diploid dis discretization discretize dl dna docstring doi dx e edu electropherogram electropherograms elegans eletropherogram em email encoders endonucleases engr ent etiologies eukaryote eukaryotic f falciparum feedforward ferritin foldedness forbes fr fsa g gametes gapped generalise genome genomes genomic genomics genotyping glabrata glioma glutamicum gonad gossypii gr gsu haplotype haplotypes haplotyping homologues htm html http https hybridization hybridize hyperedge hyperellipsoidal hypergraph hypergraphs hypermethylation hypomethylation i iTEA idx imbalanced infering inprint inrialpes intersite intestinalis intra intracellular intraconnected j jan jul jussieu k kB l lactis lia linearization localizations looptk ltx lu lymphomas lysine m mRNA mRNAs memetic metaheuristics methylation mfold microRNA microarray microarrays mistis mitochondrial modelling mtDNA multicategory multichoice multiclass multicriterion multidrug multilayer multimodal multiobjective multipartite multiscale n nd ndoiu neuro neuroinformatics neuroscience newald ngstroms nhfb nonbinders noncoding novo o oct ois oligo oligonucleotide oligonucleotides online optimised org ortholog orthologous outliers overfitting p pRMP paralogy partitional pathobiology pathset pedigrees pentose perceptron phenotypes phylogenetic phylogenetics phylogenies physicochemical pneumophila polymorphism polymorphisms positionwise ppi pre preclustering prescreen prokaryotic proteasome proteome proteomic proteomics queryable rard recalibrating recalibration regraft regularized repressor resampling revertible rn s scalability semianalytical semisupervised serine showtags siRNA siRNAs simtk sn snv spa speciation ssEAM statechart statecharts stepc steric subcellular supertree supertrees sy synteny talip tanglegram taxa tcbb tex timeframe trans transcriptional translocation transparentia trimeric twocolumn u uconn ultrametric unfiltered unsupervised utah vanIersel von waltii wavelet wc wei www wwwabi x xor