Last update:
Fri Jul 4 07:45:39 MDT 2008
George Cybenko From the Editor-in-Chief: Computational
Culture Shock . . . . . . . . . . . . . 1--3
Ken Haas CSE in Industry: Where the Rubber Meets
the Road . . . . . . . . . . . . . . . . 4--6
Paul F. Dubois Scientific Programming: Ten Good
Practices in Scientific Programming . . 7--11
Jim X. Chen and
Xiaodong Fu Visualization Corner: Integrating
Physics-Based Computing & Visualization:
Modeling Dust Behavior . . . . . . . . . 12--16
Alex F. Burr and
Bruce A. Craig and
Choong-Geun Chung and
Tak-Shing Harry So and
Terry J. Deveau and
Donald L. Shirer Technology News and Reviews: Programs
for Statistics and Data Analysis . . . . 17--21
Carl J. Beckmann and
George Cybenko Guest Editors' Introduction: Computation
in Communication . . . . . . . . . . . . 22--22
Carl J. Beckmann and
Donald D. McManus and
George Cybenko Horizons in Scientific Networking and
Computing . . . . . . . . . . . . . . . 23--30
Marc Kimpe and
Harry Leib and
Olivier Maquelin and
Ted H. Szymanski Fast Computational Techniques for Indoor
Radio Channel Estimation . . . . . . . . 31--41
James H. Cowie and
David M. Nicol and
Andy T. Ogielski Modeling the Global Internet . . . . . . 42--50
Dennis Healey and
Tim Olson and
Ulf Österberg Wavelets in Optical Communications . . . 51--57
Martin W. Lo Satellite-Constellation Design . . . . . 58--67
David J. Kuck and
D. C. Rapaport and
Hans J. Herrmann and
H. Eugene Stanley and
Dietrich Stauffer How Computation Affects Science and
Engineering: 5 Essays . . . . . . . . . 68--80
Bruce Segee Book & Web Reviews: Methods in Neuronal
Modeling: From Ions to Networks, 2nd
edition . . . . . . . . . . . . . . . . 81--81
Francis Sullivan and
William J. Thompson Computing Prescriptions: By Way of
Introduction . . . . . . . . . . . . . . 82--83
Grigori V. Kapoustin and
Jian Ma Computing Simulations: Modeling
Adsorption-Desorption Processes in
Porous Media . . . . . . . . . . . . . . 84--91
Tom Compton Web Mechanics: MathScript, Internet
Connection to Mathematica . . . . . . . 92--95
Norris Parker Smith Interfaces: The Ultimate Merger:
Microsoft and the Postal Service . . . . 96--97
Francis Sullivan From the Editor: Recycling Center . . . 1--1
Donald L. Shirer Technology News & Reviews: HiQ Gets a
High Five for Mathematical Analysis . . 4--5
David L. Lewin Trends: Totally Rad: Planning Radiation
Therapy in 3D . . . . . . . . . . . . . 6--9
Timothy C. Germann and
Peter S. Lomdahl Recent Advances in Large-Scale Atomistic
Materials Simulations . . . . . . . . . 10--11
Toshiyuki Fukushige and
Piet Hut and
Junichiro Makino High-Performance Special-Purpose
Computers in Science . . . . . . . . . . 12--13
John R. Rice A Perspective on Computational Science
in the 21st Century . . . . . . . . . . 14--16
Joel Tohline and
Greg L. Bryan Guest Editors' Introduction: Cosmology
and Computation . . . . . . . . . . . . 17--20
J. Richard Bond and
Robert G. Crittenden and
Andrew H. Jaffe and
Lloyd Knox Computing Challenges of the Cosmic
Microwave Background . . . . . . . . . . 21--35
Simon D. M. White and
Volker Springel Fitting the Universe on a Supercomputer 36--45
Greg L. Bryan Fluids in the Universe: Adaptive Mesh
Refinement in Cosmology . . . . . . . . 46--53
Alexander S. Szalay The Sloan Digital Sky Survey . . . . . . 54--62
Mark G. Gray and
Randy M. Roberts and
Tom M. Evans Scientific Programming: Shadow-Object
Interface between Fortran 95 and C++ . . 63--70
Isabel Beichl and
Francis Sullivan Computing Prescriptions: The Importance
of Importance Sampling . . . . . . . . . 71--73
Normand Mousseau and
Gerard T. Barkema Computer Simulations: Exploring
High-Dimensional Energy Landscapes . . . 74--80
Nikolaos Aravas Book & Web Reviews: Finite Elements:
Theory, Fast Solvers, and Applications
in Solid Mechanics . . . . . . . . . . . 81--82
Jim X. Chen Visualization Corner: A Jump on
Visualization: The Bottoms-Up Approach 83--87
Daniel Frenkel and
Laura Golebiowski and
Renato Portugal Education: Computer Algebra Takes on the
Vibrating Membrane Problem . . . . . . . 88--93
Patricia Daukantas Conferences: SC98 Treats the Past as
Prologue to Computing's Future . . . . . 94--95, 97--97
Norris Parker Smith Interfaces: How the Y1K Problem May Have
Been Resolved in the Year 999 . . . . . 96--97
Rajiv Kalia From the Editors: Consilience through
Information Technology . . . . . . . . . 2--4
Joseph `Roy' North and
Martin Lo and
Gregory S. Vigneault Letters to the editor: You're off Your
Orbit; Internet Time: Why Switch for
Swatch? . . . . . . . . . . . . . . . . 5--5
Keri Schreiner Trends: Creativity is Key to Drug R&D . . 6--9
Kurt Binder and
Marcus Muller and
Friedericke Schmid How Simulations Clarify Complex Material
Phase Transitions . . . . . . . . . . . 10--12
Wolfgang Christian Educational Software and the Sisyphus
Effect . . . . . . . . . . . . . . . . . 13--15
Jill P. Mesirov and
Donna K. Slonim Guest Editor's Introduction:
Computational Biology . . . . . . . . . 16--17
Mark J. Daly The Computational Challenge of Linkage
Analysis: What Causes Diseases? . . . . 18--25
Charles DeLisi and
Sandor Vajda Computational Problems in Cell Biology 26--32
Gene Myers Whole-Genome DNA Sequencing . . . . . . 33--43
Lincoln D. Stein and
Jean Thierry-Mieg AceDB: A Genome Database Management
System . . . . . . . . . . . . . . . . . 44--52
D. E. Stevenson A Critical Look at Quality in
Large-Scale Simulations . . . . . . . . 53--63
Jerzy Karczmarczuk Scientific Programming: Scientific
Computation and Functional Programming 64--72
John T. Betts CSE in Industry: A Direct Approach to
Solving Optimal Control Problems . . . . 73--75
Eugene I. Butikov Education: Parametric Resonance . . . . 76--83
William J. Thompson Computing Prescriptions: Spheroidal Wave
Functions . . . . . . . . . . . . . . . 84--87
Norris Parker Smith Interfaces: Marketing Eau De Skunqoil:
Only on the Internet . . . . . . . . . . 88--89
George Cybenko From the Editors: The Intellectual
Property Lottery . . . . . . . . . . . . 4--4
Alex Kilpatrick Letters to the Editors: Internet Time:
Switch to Swatch? . . . . . . . . . . . 5--5
Alex F. Burr Technology News & Reviews: Mathcad 8: New
Features for a Popular Math Program . . 6--9
Tom Marchioro Interview: With Cleve Moler Putting Math
to Work . . . . . . . . . . . . . . . . 10--13
Michael Creutz Essays: Computers and the Particle
Theorist . . . . . . . . . . . . . . . . 14--15
Michael W. Berry Guest Editor's Introduction: Massive
Data Visualization . . . . . . . . . . . 16--17
William W. Hargrove and
Forrest M. Hoffman Using Multivariate Clustering to Define
Ecoregion Borders . . . . . . . . . . . 18--25
Andrew Booker and
Michelle Condliff and
Mark Greaves and
Frederick B. Holt and
Anne Kao and
Daniel J. Pierce and
Stephen Poteet and
Yuan-Jye Jason Wu Visualizing Text Data Sets . . . . . . . 26--35
Michael L. Norman and
John Shalf and
Stuart Levy and
Greg Daues Diving Deep: Data Management and
Visualization Strategies for Adaptive
Mesh Refinement Simulations . . . . . . 36--47
Hans G. Kaper and
Elizabeth Wiebel and
Sever Tipei Data Sonification and Sound
Visualization . . . . . . . . . . . . . 48--58
Isabel Beichl and
Francis Sullivan Computing Prescriptions: Pay Me Now or
Pay Me Later . . . . . . . . . . . . . . 59--62
Michael Thoresen Web Mechanics: \TeX to Web --- Fast and
Easy . . . . . . . . . . . . . . . . . . 63--65
Scott Haney and
James Crotinger Scientific Programming: How Templates
Enable High-Performance Scientific
Computing in C++ . . . . . . . . . . . . 66--72
Matthew C. Kuntz and
Olga Perkovic and
Karin A. Dahmen and
Bruce W. Roberts and
James P. Sethna Computer Simulations: Hysteresis,
Avalanches, and Noise . . . . . . . . . 73--81
Ying Zhu and
Jim X. Chen and
Shide Xiao and
Edward B. MacMahon Visualization Corner: $3$D Knee Modeling
and Biomechanical Simulation . . . . . . 82--87
Norris Parker Smith Interfaces: Y3K Prevails: Is the Great
Database Deleted Forever? . . . . . . . 88--89
Francis Sullivan From the Editors: Can a Numerical
Computation Prove Anything? . . . . . . 2--3
Douglas W. Muir and
William G. Harter and
Denis Donnelly and
Thomas L. Marchioro II Letters to the Editors: Internet Time
Redux; Educational Software Contest . . 4--9
David P. Landau Essays: Phase Transitions and Critical
Phenomena . . . . . . . . . . . . . . . 10--11
Nancy A. Forbes and
Laura F. Landweber Spotlight: Computer Science and the
Evolution of Genetic Information . . . . 12--15
David I. Lewin Trends: Cruising Digital Ships on
Electronic Seas . . . . . . . . . . . . 16--19
Priya Vashishta and
Aiichiro Nakano Guest Editors' Introduction: Dynamic
Fracture Analysis . . . . . . . . . . . 20--23
Krishnaswamy Ravi-chandar and
Wolfgang Knauss Processes Controlling Fast Fracture of
Brittle Solids . . . . . . . . . . . . . 24--31
Elisabeth Bouchaud and
Florin Paun Fracture and Damage at a Microstructural
Scale . . . . . . . . . . . . . . . . . 32--38
Aiichiro Nakano and
Rajiv K. Kalia and
Priya Vashishta Scalable Molecular-Dynamics,
Visualization, and Data-Management
Algorithms for Material Simulations . . 39--47
Michael Marder Molecular Dynamic of Cracks . . . . . . 48--55
Priya Vashishta and
Rajiv K. Kalia and
Aiichori Nakano Large-Scale Atomistic Simulations of
Dynamic Fracture . . . . . . . . . . . . 56--65
Paul F. Dubois and
T.-Y. Yang Scientific Programming: Extending Python
with Fortran . . . . . . . . . . . . . . 66--73
Enrique Canessa Web Mechanics: Enabling Synchronous Math
Discussions on the Web . . . . . . . . . 74--76
Seymour Trester Education: Computer-Simulated Fresnel
Diffraction Using the Fourier Transform 77--83
William J. Thompson Computing Prescriptions: Don't Subtract
the Background . . . . . . . . . . . . . 84--88
Dirk Helbling and
Martin Treiber Computer Simulations: Numerical
Simulation of Macroscopic Traffic
Equations . . . . . . . . . . . . . . . 89--99
Mark F. Gyure CiSE in Industry: Bridging Time and
Length Scales in Semiconductor Process
Model Development . . . . . . . . . . . 100--103
Norris Parker Smith Interfaces: Terms of Life Defined in
Agreement with Fate.Com --- A Fantasy 104--105
George Cybenko From the Editor: Infrastructure
Immunology . . . . . . . . . . . . . . . 1--3
Nancy A. Forbes Spotlight: Japanese Reforms Foster
Innovative Technology . . . . . . . . . 4--9
Robert Co\"\isson and
Luigi Cristofolini Technology News and Reviews: Real-Time
Toolbox Provides Convenient Lab-Data
Acquisition . . . . . . . . . . . . . . 10--13
Leo Joskowicz and
Elisha Sacks Computer-Aided Mechanical Design Using
Configuration Spaces . . . . . . . . . . 14--21
Kevin Northover and
Andrew W. Lo Guest Editors' Introduction:
Computational Finance . . . . . . . . . 22--23
David Shaw Interview: At the Intersection of
Technology and Finance . . . . . . . . . 24--25
J. Doyne Farmer Physicists Attempt to Scale the Ivory
Towers of Finance . . . . . . . . . . . 26--39
Dimitris Bertsimas and
Paul Hummell and
Andrew W. Lo Optimal Control of Execution Costs for
Portfolios . . . . . . . . . . . . . . . 40--53
James Gatheral and
Yonathan Epelbaum and
Jining Han and
Kishor Laud and
Olga Lubovitsky and
Elaine Kant and
Curt Randall Implementing Option-Pricing Models Using
Software Synthesis . . . . . . . . . . . 54--64
Denis Donnelly Education: Winners of the CiSE Software
Contest . . . . . . . . . . . . . . . . 65--69
Jeremy G. Siek and
Andrew Lumsdaine Scientific Programming: The Matrix
Template Library: Generic Components for
High-performance Scientific Computing 70--78
N. Sanjay Rebello Web Mechanics: How to Distribute Your
Software over the Web . . . . . . . . . 79--81
Jim X. Chen and
Ophir Frieder Visualization Corner: Applications of
Computer Graphics Software Tools . . . . 82--87
Anonymous 1999 Annual Index . . . . . . . . . . . 88--91
James S. Ball Computing Prescriptions: Orthogonal
Polynomials, Gaussian Quadratures, and
PDEs . . . . . . . . . . . . . . . . . . 92--95
Norris Parker Smith Interfaces: The Eureka Anomaly . . . . . 96--96, 95--95
Francis Sullivan From the Editors: The Joy of Algorithms 2--2
Donald L. Shirer Technology News & Reviews: Multimedia cT
Language Is Now Free . . . . . . . . . . 3--5
David I. Lewin Focus: Freedom of Information . . . . . 6--9
J. S. Shang and
Marcus Wagner and
Yi Pan and
Douglas C. Blake Strategies for Adopting FVTD on
Multicomputers . . . . . . . . . . . . . 10--21
Jack Dongarra and
Francis Sullivan Guest Editors' Introduction: The Top 10
Algorithms . . . . . . . . . . . . . . . 22--23
David H. Bailey Integer Relation Detection . . . . . . . 24--28
John C. Nash The (Dantzig) Simplex Method for Linear
Programming . . . . . . . . . . . . . . 29--31
Henk A. van der Vorst Krylov Subspace Iteration . . . . . . . 32--37
Beresford N. Parlett The $QR$ Algorithm . . . . . . . . . . . 38--42
Joseph JaJa A Perspective on Quicksort . . . . . . . 43--49
G. W. Stewart The Decompositional Approach to Matrix
Computation . . . . . . . . . . . . . . 50--59
Daniel N. Rockmore The FFT: An Algorithm the Whole Family
Can Use . . . . . . . . . . . . . . . . 60--64
Isabel Beichl and
Francis Sullivan The Metropolis Algorithm . . . . . . . . 65--69
David Padua The Fortran I Compiler . . . . . . . . . 70--75
John Board and
Klaus Schulten The Fast Multipole Algorithm . . . . . . 76--79
Mark Newman Computer Simulations: Simple Models of
Evolution and Extinction . . . . . . . . 80--86
Chuck Bennett Web Mechanics: Multipart Homework
Problems over the Web . . . . . . . . . 87--91, 95--95
Julian V. Noble Computing Prescriptions: Gauss-Legendre
Principal Value Integration . . . . . . 92--95
Norris Parker Smith Interfaces: Mr. & Mrs. Average America 96--97
George Cybenko From the Editors: The Death of
Disciplines . . . . . . . . . . . . . . 2--3
Anonymous Marketing Survey . . . . . . . . . . . . 4--5
Donald L. Shirer Technology News & Reviews: Basic: The
Little Language That Wouldn't Die . . . 6--10
Raquell Holmes and
Roscoe Giles Essay: Minority Participation in
Computational Science . . . . . . . . . 11--13
Merrell Patrick and
Robert Voigt Guest Editors' Introduction: Advancing
Simulation Science and Engineering at
Disciplinary Interfaces . . . . . . . . 14--16
Gil Weigand and
Paul Messina Interview: Sea Changes in Computational
Power: Testing Our Metal . . . . . . . . 17--20
Michael T. Heath and
William A. Dick Virtual Prototyping of Solid Propellant
Rockets . . . . . . . . . . . . . . . . 21--32
Robert Rosner and
Alan Calder and
Jonathan Dursi and
Bruce Fryxell and
Donald Q. Lamb and
Jens C. Niemeyer and
Kevin Olson and
Paul Ricker and
Frank X. Timmes and
James W. Truran and
Henry Tufo and
Yuan-Nan Young and
Michael Zingale and
Ewing Lusk and
Rick Stevens Flash Code: Studying Astrophysical
Thermonuclear Flashes . . . . . . . . . 33--41
Michael Aivazis and
William A. Goddard and
Dan Meiron and
Michael Ortiz and
James Pool and
Joseph Shepherd A Virtual Test Facility for Simulating
the Dynamic Response of Materials . . . 42--53
William C. Reynolds and
Massimiliano Fatica Stanford Center for Integrated
Turbulence Simulations . . . . . . . . . 54--63
Thomas C. Henderson and
Patrick A. McMurtry and
Philip J. Smith and
Gregory A. Voth and
Charles A. Wight and
David F. Pershing Simulating Accidental Fires and
Explosions . . . . . . . . . . . . . . . 64--76
Dona Crawford and
Donald McCoy and
David Nowak Our Perspective on the Alliance
Program's Benefits . . . . . . . . . . . 77--79
James C. Bean CSE in Industry: A Multiple-Choice
Genetic Algorithm for a Nonlinear
Cutting Stock Problem . . . . . . . . . 80--83
Stanley P. Lipshitz and
Renato Portugal and
John Vanderkooy Scientific Programming: Using Computer
Algebra to Explore Sound-Wave
Propagation in Spherical Cavities . . . 84--94
Jim Gubernatis and
Naomichi Hatano Computer Simulations: The Multicanonical
Monte Carlo Method . . . . . . . . . . . 95--103
Daniel Bilar Book and Web Reviews: To See the World
in a Grain of Sand . . . . . . . . . . . 104--104
Francis Sullivan From the Editors: So Now They Tell Us! 2--3
Jun Makino and
John Board and
Klaus Schulten and
Peter Borcherds and
Rubin D. Orduz Z. Letters to the Editors: ``The Fast
Multipole Algorithm'' and ``The Top 10
Algorithms'' . . . . . . . . . . . . . . 4--5
David I. Lewin Focus: Teaching Techies to Become
Entrepreneurs . . . . . . . . . . . . . 6--9
Donald L. Shirer Technology News & Reviews: Products to
Simplify Your Life . . . . . . . . . . . 10--11
Carl Taswell The What, How, and Why of Wavelet
Shrinkage Denoising . . . . . . . . . . 12--19
John B. Rundle Guest Editor's Introduction:
Computational Earth System Science . . . 20--21
Louis Moresi and
Michael Gurnis and
Shijie Zhong Plate Tectonics and Convection in the
Earth's Mantle: Toward a Numerical
Simulation . . . . . . . . . . . . . . . 22--33
Eric F. Preston and
Jorge S. SáMartins and
John B. Rundle and
Marian Anghel and
William Klein Models of Earthquake Faults with
Long-Range Stress Transfer . . . . . . . 34--41
Bruce D. Malamud and
Donald L. Turcotte Cellular-Automata Models Applied to
Natural Hazards . . . . . . . . . . . . 42--51
Howard A. Zebker Studying the Earth with Interferometric
Radar . . . . . . . . . . . . . . . . . 52--60
Gary A. Glatzmaier and
Thomas Clune Computational Aspects of Geodynamo
Simulations . . . . . . . . . . . . . . 61--67
Marco Lanzagorta and
Robert Rosenberg and
Lawrence J. Rosenblum and
Eddy Y. Kuo Visualization Corner: Rapid Prototyping
of Virtual Environments . . . . . . . . 68--73
Michael Malak Web Mechanics: Adding Video to Your Web
Pages . . . . . . . . . . . . . . . . . 74--77
Burkhard D. Steinmacher-Burow Scientific Programming: Dividing the
Application Definition from the
Execution . . . . . . . . . . . . . . . 78--83
Isabel Beichl and
Francis Sullivan Computing Prescriptions: $A = B$? . . . 84--87
Maurice de Koning and
Wei Cai and
Alex Antonelli and
Sidney Yip Computer Simulations: Efficient
Free-Energy Calculations by the
Simulation of Nonequilibrium Processes 88--96
Norris Parker Smith Interfaces: The Totally Useless Things
Dot.com: Is It the Ultimate Future for
the Web? . . . . . . . . . . . . . . . . 97--97, 87--87
George Cybenk From the Editors: Who Wants More? . . . 3--3
Douglas Tougaw Technology News & Reviews: Sun PCi
Provides the Best of Two Worlds . . . . 4--8
Toby Burnett and
Chris Chaput and
Heather Arrighi and
Jay Norris and
Daniel J. Suson Simulating the Glast Satellite with
Gismo . . . . . . . . . . . . . . . . . 9--18
Andreas Stathopoulos and
Serdar Ögüt and
Yousef Saad and
James Chelikowsky and
Hanchul Kim Parallel Methods and Tools for
Predicting Material Properties . . . . . 19--33
Kevin Amaratunga A Wavelet-Based Approach for Compressing
Kernel Data in Large-Scale Simulations
of $3$D Integral Problems . . . . . . . 34--45
Carlos Alberola and
Lorenzo Tardón and
Juan Ruiz-Alzola Graphical Models for Problem Solving . . 46--57
D. Stott Parker and
Brad Pierce and
Paul R. Eggert Monte Carlo Arithmetic: How to Gamble
with Floating Point and Win . . . . . . 58--68
Steven H. Kleinstein and
Philip E. Seiden Computer Simulations: Simulating the
Immune System . . . . . . . . . . . . . 69--77
Kristi D. Concannon and
William J. Thompson Computing Prescriptions: Regression
Lines: More than Meets the Eye . . . . . 78--81
Paul Dubois Scientific Programming: Extending Maple
with Compiled Routines . . . . . . . . . 82--86
Hermann Härtel and
Michael Lüdke Education: $3$D Simulations of
Interacting Particles . . . . . . . . . 87--90
Richard R. Silbar Web Mechanics: Animating Equations on
the Web . . . . . . . . . . . . . . . . 91--95
Susan R. McKay Book and Web Reviews: Mathematical
Models . . . . . . . . . . . . . . . . . 96--96
Francis Sullivan From the Editors: Simplicity and
Complexity . . . . . . . . . . . . . . . 4--5
Julian V. Noble Technology News & Reviews: Adventures in
the Forth Dimension . . . . . . . . . . 6--10
David I. Lewin Focus: Do Databases Need Protection?
From Whom? . . . . . . . . . . . . . . . 11--13
Martin S. Weinhous and
Joseph M. Rosen Guest Editors' Introduction: Computing
in Medicine . . . . . . . . . . . . . . 14--17
Idith Haber and
Dimitris N. Metaxas and
Leon Axel Using Tagged MRI to Reconstruct a $3$D
Heartbeat . . . . . . . . . . . . . . . 18--30
Christine L. Hartmann Siantar and
Dewey Garrett Photon-Beam Radiation Therapy and Monte
Carlo . . . . . . . . . . . . . . . . . 31--38
Maryellen L. Giger Computer-Aided Diagnosis of Breast
Lesions in Medical Images . . . . . . . 39--45
Scott L. Delp and
J. Peter Loan A Computational Framework for Simulating
and Analyzing Human and Animal Movement 46--55
David Scherer and
Paul Dubois and
Bruce Sherwood Scientific Programming: VPython: $3$D
Interactive Scientific Graphics for
Students . . . . . . . . . . . . . . . . 56--62
Isabel Beichl and
Francis Sullivan Computing Prescriptions: Determining the
Derminant . . . . . . . . . . . . . . . 63--66
Jim X. Chen and
Yonggao Yang Visualization Corner: $3$D Graphics
Formats and Conversions . . . . . . . . 67--73
Osman Yasar and
Kulathur S. Rajasethupathy and
Robert E. Tuzun and
R. Alan McCoy and
Joseph Harkin Education: A New Perspective on
Computational Science Education . . . . 74--79
Debashish Chowdhury and
Ludger Santen and
Andres Schadschneider Computer Simulations: Simulation of
Vehicular Traffic: A Statistical Physics
Perspective . . . . . . . . . . . . . . 80--87
Norris Parker Smith Interfaces: The Long Way from 2.5 Gen to
the Third Generation . . . . . . . . . . 88
George Cybenko From the Editors: The New Millennium
Challenge . . . . . . . . . . . . . . . 4
Donald L. Shirer Technology News & Reviews: An Olio of
Almost Obscure Programmers' Products . . 6
Ren-Jye Yang and
Alexander Akkerman and
Daniel F. Anderson and
Omar M. Faruque and
Lei Gu CSE in Industry: Robustness Optimization
for Vehicular Crash Simulations . . . . 8
Robert Drach Scientific Programming: Serving
Scientific Data over the Web . . . . . . 14
Donald G. Truhlar and
Vincent McKoy Guest Editors' Introduction:
Computational Chemistry . . . . . . . . 19
Michele Parrinello Simulating Complex Systems without
Adjustable Parameters . . . . . . . . . 22
Tom K. Woo and
Serguei Patchkovskii and
Tom Ziegler Atomic Scale Modeling of Polymerization
Catalysts . . . . . . . . . . . . . . . 28
Tamar Schlick and
Daniel A. Beard and
Jing Huang and
Daniel A. Strahs and
Xiaoliang Qian Computational Challenges in Simulating
Large DNA over Long Times . . . . . . . 38
Siddharth Dasgupta The Role and Challenges of Computational
Chemistry in Industrial Problems . . . . 52
Matthias Schwab and
Martin Karrenbach and
Jon Claerbout Making Scientific Computations
Reproducible . . . . . . . . . . . . . . 61
Edward J. Wegman Visualization Corner: Affordable
Environments for $3$D Collaborative Data
Visualization . . . . . . . . . . . . . 68
David P. Feldman Book and Web Reviews: Monte Carlo
Methods . . . . . . . . . . . . . . . . 73
Stefan Boettcher Computer Simulations: Extremal
Optimization:Heuristics via
Coevolutionary Avalanches . . . . . . . 75
Nancy Forbes Focus: Biologically Inspired Computing 83
Panayotis A. Assimakopoulos Education: A Computer-Aided Introductory
Course in Electricity and Magnetism . . 88
Anonymous 2000 Annual Index . . . . . . . . . . . 94
William J. Thompson Computing Prescriptions: Visualizing
Transcendental Functions . . . . . . . . 98
Norris Parker Smith Interfaces: Janus: The Ideal Patron for
Computing . . . . . . . . . . . . . . . 104
Francis Sullivan From the Editors: Onward and Upward . . 2
Nancy Forbes Focus: Evolution on a Chip: Evolvable
Hardware Aims to Optimize Circuit Design 6
Douglas Tougaw Technology News & Reviews: Agilent's
Mixed-Signal Oscilloscopes Provide
Enhanced Measurement Capabilities . . . 11
Stephen A. Langer and
Edwin R. Fuller, Jr. and
W. Craig Carter OOF: An Image-Based Finite-Element
Analysis of Material Microstructures . . 15
Delores M. Etter and
Charles J. Holland and
John Grosh Export Control of High-Performance
Computing: Analysis and Alternatives . . 24
Jack J. Dongarra and
David W. Walker The Quest for Petascale Computing . . . 32
George Cybenko and
Francis Sullivan Guest Editors' Introduction: Tomorrow's
Hardest Problems . . . . . . . . . . . . 40
Anthony Guttmann Enumerations in Statistical Mechanics
and Combinatorics . . . . . . . . . . . 42
Jonathan M. Borwein and
Peter B. Borwein Challenges in Mathematical Computing . . 48
Martin B. Haugh and
Andrew W. Lo Computational Challenges in Portfolio
Management . . . . . . . . . . . . . . . 54
Dianne P. O'Leary and
Scott T. Weidman Conference Report: The Interface between
Computer Science and the Mathematical
Sciences . . . . . . . . . . . . . . . . 60
Regina Hannemann and
Jens Hannemann and
Michael Zellerhoff and
Ludger Klinkenbusch Scientific Programming: Scientific
Programming in Field Theory, Part 1 . . 66
Geoffrey Fox Web Computing: Peer-to-Peer Networks . . 75
William J. Thompson Computing Prescriptions: Poisson
Distributions . . . . . . . . . . . . . 78
André Jaun and
Johan Hedin and
Thomas Johnson Education: Teaching Computational
Methods for Partial Differential
Equations Using the Web . . . . . . . . 83
Mark A. Peterson and
Yanir Rubinstein Computer Simulations: Turbulence on a
Desktop . . . . . . . . . . . . . . . . 86
George Cybenko Book and Web Reviews: Machine Learning 95
Jim X. Chen and
Yonggao Yang and
Xusheng Wang Visualization Corner: Physics-Based
Modeling and Real-Time Simulation . . . 98
Norris Parker Smith Interfaces: The Crucial 0.1 Percent
Difference . . . . . . . . . . . . . . . 104
Francis Sullivan From the Editors: Threads and Surprises 3
David I. Lewin Focus: Searching for the Elusive Qubit 4
Donald L. Shirer Technology News & Reviews: LabView 6i
Adds Internet Features to Data
Acquisition Environment . . . . . . . . 8
Samuel T. Jones and
Scott E. Parker and
Charlson C. Kim Low-Cost High-Performance Scientific
Visualization . . . . . . . . . . . . . 12
Renate Dohmen and
Jakob Pichlmeier and
Max Petersen and
Frank Wagner and
Matthias Scheffler Parallel FP-LAPW for Distributed-Memory
Machines . . . . . . . . . . . . . . . . 18
Max Schaible Searching the Scientific Database
Literature for Guides to Experiment and
Theory . . . . . . . . . . . . . . . . . 30
Mark A. Ratner and
James R. Chelikowsky Guest Editors' Introduction:
Nanoscience, Nanotechnology, and
Modeling . . . . . . . . . . . . . . . . 40
Deepak Srivastava and
Madhu Menon and
Kyeongjae Cho Computational Nanotechnology with Carbon
Nanotubes and Fullerenes . . . . . . . . 42
Aiichiro Nakano and
Martina E. Bachlechner and
Rajiv K. Kalia and
Elefterios Lidorikis and
Priya Vashishta and
George Z. Voyiadjis and
Timothy J. Campbell and
Shuji Ogata and
Fuyucki Shimojo Multiscale Simulation of Nanosystems . . 56
K. Lance Kelly and
Anne A. Lazarides and
George C. Schatz Computational Electromagnetics of Metal
Nanoparticles and Their Aggregates . . . 67
Geoffrey Fox and
Dennis Gannon Grid Computing: Computational Grids . . 74
Jens Hannemann and
Regina Hannemann and
Michael Zellerhoff and
Ludger Klinkenbusch Scientific Programming: Scientific
Programming in Field Theory,Part 2 . . . 78
Timothy C. Black and
William J. Thompson Computing Prescriptions: Bayesian Data
Analysis . . . . . . . . . . . . . . . . 86
Wolfgang Windl and
Matthew Laudon and
Neil N. Carlson and
Murray S. Daw CSE in Industry: Predictive Process
Simulation and Stress-Mediated Diffusion
in Silicon . . . . . . . . . . . . . . . 92
Norris Parker Smith Interfaces: How Bubbles Pop\ldotsand
Could Pop Once More . . . . . . . . . . 96
Francis Sullivan On Certainty . . . . . . . . . . . . . . 5--7
David I. Lewin Keeping Track of the Big Event . . . . . 8--11
Jeff Will Imagenation Frame Grabbers for Computer
Vision Systems . . . . . . . . . . . . . 12--15
Geoff Bradley and
Denis Weaire Instabilities of Two Liquid Drops in
Contact . . . . . . . . . . . . . . . . 16--21
Steve W. Bova and
Clay P. Breshears and
Henry Gabb and
Bob Kuhn and
Bill Magro and
Rudolf Eigenmann and
Greg Gaertner and
Stefano Salvini and
Howard Scott Parallel Programming with Message
Passing and Directives . . . . . . . . . 22--37
C. Ross Ethier Guest Editor's Introduction:
Bioengineering and Biophysics . . . . . 38--39
Jeffrey Skolnick and
Andrzej Kolinski Computational Studies of Protein Folding 40--50
David A Vorp and
David A Steinman and
C. Ross Ethier Computational Modeling of Arterial
Biomechanics . . . . . . . . . . . . . . 51--64
Leo Joskowicz and
Russell H. Taylor Computers in Imaging and Guided Surgery 65--72
Norman Chonacky and
Mitchell Lit Computers for Integrative Instruction in
Bioengineering . . . . . . . . . . . . . 73--83
Bert W. Rust Fitting Nature's Basic Function. Part I:
Polynomials and Linear Least Squares . . 84--89
David M. Beazley and
Brian D. Ward and
Ian R. Cooke The Inside Story on Shared Libraries and
Dynamic Loading . . . . . . . . . . . . 90--97
Oliver Vormoor Quick and Easy Interactive Molecular
Dynamics Using Java3D . . . . . . . . . 98--104
Elizabeth A. Lunney Computing in Drug Discovery: The Design
Phase . . . . . . . . . . . . . . . . . 105--108
Oliver Vormoor Data Visualization: Parallel Coordinates
and Dimension Reduction . . . . . . . . 110--113
Francis Sullivan Willing Suspension of Disbelief . . . . 3
Greg Goth Will Terra Be Terrific? . . . . . . . . 4--8
Donald L. Shirer Versatile Laboratory Computer Interfaces 9--13
Efthimios Kaxiras Guest Editor's Introduction: Materials
Science . . . . . . . . . . . . . . . . 14--15
Peter Kratzer and
Matthias Scheffler Surface Knowledge: Toward a Predictive
Theory of Materials . . . . . . . . . . 16--25
Sauro Succi and
Olga Filippova and
Greg Smith and
Efthimios Kaxiras Applying the Lattice Boltzmann Equation
to Multiscale Fluid Problems . . . . . . 26--37
Steven G. Johnson and
Attila Mekis and
Shanhui Fan and
John D. Joannopoulos Molding the Flow of Light . . . . . . . 38--47
Enrico Onofri Elementary Celestial Mechanics Using
Matlab . . . . . . . . . . . . . . . . . 48--53
J. Michael Owen An Open-Source Project for Modeling
Hydrodynamics in Astrophysical Systems 54--59
Bert W. Rust Fitting Nature's Basic Functions. Part
II: Estimating Uncertainties and Testing
Hypotheses . . . . . . . . . . . . . . . 60--64
Giovanni Aloisio and
Massimo Cafaro and
Carl Kesselman and
Roy Williams Web Access to Supercomputing . . . . . . 66--72
Andrea Clematis and
Michela Spagnuolo Analyzing Fuzzy Surface Modeling Using
Load-Balanced Computation . . . . . . . 74--81
Albert Y. Zomaya and
James A. Anderson and
David B. Fogel and
Gerard J. Milburn and
Grzegorz Rozenberg Nonconventional Computing Paradigms in
the New Millenium: A Roundtable . . . . 82--99
Anonymous 2001 Annual Index . . . . . . . . . . . 100, c3
Francis Sullivan What's New . . . . . . . . . . . . . . . 3--4
David I. Lewin Computer-Aided Paleontology: A New Look
for Dinosaurs . . . . . . . . . . . . . 5--9
Nancy Forbes and
Paul Messina Computer Science Today in the European
Union . . . . . . . . . . . . . . . . . 10--14
Douglas Tougaw and
Jon Sanders SunRay: A Cost-Effective Desktop
Computer Solution . . . . . . . . . . . 15--17
Srikanta Kumar and
Shankar Sastry Guest Editors' Introduction:
Biocomputation . . . . . . . . . . . . . 18--19
Rajeev Alur and
Calin Belta and
Vijay Kumar and
Max Mintz and
George J. Pappas and
Harvey Rubin and
Jonathan Schug Modeling and Analyzing Biomolecular
Networks . . . . . . . . . . . . . . . . 20--31
John H. Reif DNA Lattices: A Method for
Molecular-Scale Patterning and
Computation . . . . . . . . . . . . . . 32--41
Bud Mishra Comparing Genomes . . . . . . . . . . . 42--49
Ying Xu and
Dong Xu and
Dongsup Kim and
Victor Olman and
Jane Razumovskaya and
Tao Jiang Automated Assignment of Backbone NMR
Peaks Using Constrained Bipartite
Matching . . . . . . . . . . . . . . . . 50--62
Juhani Hämäläinen and
Kari Hirvi and
Hannu Rajaniemi Using Mathematical Models to Cope with
Complex Computer Simulations . . . . . . 64--72
George K. Thiruvathukal Java at Middle Age: Enabling Java for
Computational Science . . . . . . . . . 74--84
Yonggao Yang and
Xusheng Wang and
Jim X. Chen Rendering Avatars in Virtual Reality:
Integrating a $3$D Model with $2$D
Images . . . . . . . . . . . . . . . . . 86--91
Denis Donnelly The Fireworks Effect: Exploring
Trajectory Sets in Time . . . . . . . . 92
Francis Sullivan Trust but Verify . . . . . . . . . . . . 3--4
Greg Goth Fans of Hewlett-Packard Calculators Say
``It All Adds Up'' . . . . . . . . . . . 5--8
Donald L. Shirer Mathematica Spins Web Wizardry . . . . . 9--10
Charles J. Holland and
John Grosh Guest Editors' Introduction:
High-Performance Computing: Addressing
Defense Needs of Today and Tomorrow . . 11--14
Stephen J. Schraml and
Kent D. Kimsey and
Jerry A. Clarke High-Performance Computing Applications
for Survivability-Lethality Technologies 16--21
Jay Boris The Threat of Chemical and Biological
Terrorism: Roles for HPC in Preparing a
Response . . . . . . . . . . . . . . . . 22--32
Emily A. Jarvis and
Emily A. Carter The Role of Reactive Elements in the
Bond Coat for Thermal Barrier Coatings 33--41
Robert E. Peterkin and
John W. Luginsland A Virtual Prototyping Environment for
Directed-Energy Concepts . . . . . . . . 42--49
Alan J. Wallcraft and
Jarley E. Hurlburt and
E. Joseph Metzger and
Robert C. Rhodes and
Jay F. Shriver and
Ole Martin Smedstad Real-Time Ocean Modeling Systems . . . . 50--57
Mark A. Manzardo and
Kenneth G. LeSueur An Infrared-Scene Projector Digital
Model . . . . . . . . . . . . . . . . . 58--65
Frans M. Vos and
Hans J. W. Spoelder and
Desmond M. Germans and
Rutger Hofman and
Henri Bal Real-time, Adaptive Measurement of
Corneal Shapes . . . . . . . . . . . . . 66--76
Rubin H. Landau and
David Vediner and
Pornrat Wattanakasiwich and
Kevin R. Kyle Future Scientific Digital Documents with
MathML, XML, and SVG . . . . . . . . . . 77--85
Isabel Beichl and
Francis Sullivan It's Bound to Be Right . . . . . . . . . 86--89
Karen Devine and
Erik Boman and
Robert Heapby and
Bruce Hendrickson and
Courtenay Vaughan Zoltan Data Management Service for
Parallel Dynamic Applications . . . . . 90--97
Francis Sullivan ``... And Next Year, We're Going to Do
$3$D Problems'' . . . . . . . . . . . . 3--4
David I. Lewin DNA Computing . . . . . . . . . . . . . 5--8
Doug Tougaw Finding Your Way with the Garmin GPS V 10--13
Douglass E. Post and
Francis Sullivan Guest Editors' Introduction: Limits on
Computation . . . . . . . . . . . . . . 14--15
Michael P. Frank The Physical Limits of Computing . . . . 16--26
Robert B. Laughlin The Physical Basis of Computability . . 27--30
Stephan Mertens Computational Complexity for Physicists 31--47
Charles Blilie Patterns in Scientific Software: An
Introduction . . . . . . . . . . . . . . 48--53
Sune R. Bahn and
Karsten W. Jacobsen An Object-Oriented Scripting Interface
to a Legacy Electronic Structure Code 56--66
Christoph Best and
Hans-Christian Hege Visualizing and Identifying
Conformational Ensembles in Molecular
Dynamics Trajectories . . . . . . . . . 68--75
Julian V. Noble The Full Monte . . . . . . . . . . . . . 76--81
Dave Stainforth and
Jamie Kettleborough and
Myles Allen and
Mat Collins and
Andy Heaps and
James Murphy Distributed Computing for
Public-Interest Climate Modeling
Research . . . . . . . . . . . . . . . . 82--89
Xusheng Wang and
Jim X. Chen and
Daniel B. Carr and
B. Sue Bell and
Linda Williams Pickle Geographic Statistics Visualization:
Web-Based Linked Micromap Plots . . . . 90--94
Geoffrey Fox XML and the Importance of Being an
Object . . . . . . . . . . . . . . . . . 96--98
Nicholas Giordano On Hearing the ``Shape'' of a Vibrating
String . . . . . . . . . . . . . . . . . 100, C3
Francis Sullivan Oh, What a Tangled Web We Weave . . . . 3--5
Anonymous Focus . . . . . . . . . . . . . . . . . 6--11
George Karypis Guest Editor's Introduction: Data Mining 12--13
Auroop R. Ganguly A Hybrid Approach to Improving Rainfall
Forecasts . . . . . . . . . . . . . . . 14--21
David S. Thompson and
Jaya Sreevalsan Nair and
Satya Sridhar Dusi Venkata and
Raghu K. Machiraju and
Ming Jiang and
Gheorghe Craciun Physics-Based Feature Mining for Large
Data Exploration . . . . . . . . . . . . 22--30
Naren Ramakrishnan and
Chris Bailey-Kellogg Sampling Strategies for Mining in
Data-Scarce Domains . . . . . . . . . . 31--43
Robert Grossman and
Marco Mazzucco DataSpace: A Data Web for the
Exploratory Analysis and Mining of Data 44--51
Chandrika Kamath and
Erick Cantú-Paz and
Imola K. Fodor and
Nu Ai Tang Classifying of Bent-Double Galaxies . . 52--60
Madhu Chetty and
Rajkumar Buyya Weaving Computational Grids: How
Analogous Are They with Electrical
Grids? . . . . . . . . . . . . . . . . . 61--71
Bert W. Rust Fitting Nature's Basic Functions. Part
III: Exponentials, Sinusoids, and
Nonlinear Least Squares . . . . . . . . 72--77
Emil Ong MPI Ruby: Scripting in a Parallel
Environment . . . . . . . . . . . . . . 78--82
Geoffrey Fox E-Science Meets Computational Science
and Information Technology . . . . . . . 84--85
Dale R. Shires and
William Green and
Shawn Walsh Designing, Controlling, and Visualizing
Composite Material Manufacturing . . . . 86--91
George Cybenko Understanding Quantum Computing . . . . 92--93
Matt Marone The Mercer Online Interactive Chaotic
Pendulum . . . . . . . . . . . . . . . . 94, C3
Francis Sullivan It All Comes Down To $\mbox{B\_NEW}
\Leftarrow B_0 \oplus (B_1 \vee B_2)$ 2--3
Greg Goth Infrastructure Simulation Effort Has
High Hopes, Faces High Hurdles . . . . . 4--11
Nancy Forbes Treading New Ground . . . . . . . . . . 12--13
Donald L. Shirer Planetarium and Observer Software . . . 14--23
William F. Spotz and
Paul Swarztrauber Guest Editors' Introduction: Climate
Modeling . . . . . . . . . . . . . . . . 24--25
Stephen J. Thomas and
Richard D. Loft and
John M. Dennis Parallel Implementation Issues: Global
versus Local Methods . . . . . . . . . . 26--31
David A. Randall and
Todd D. Ringler and
Ross P. Heikes and
Phil Jones and
John Baumgardner Climate Modeling with Spherical Geodesic
Grids . . . . . . . . . . . . . . . . . 32--41
Mohamed Iskandarani and
Dale B. Haidvogel and
Julia C. Levin and
Enrique Curchitser and
Christopher A. Edwards Multiscale Geophysical Modeling Using
the Spectral Element Method . . . . . . 42--48
Kao-San Yeh and
Shian-Jiann Lin and
Richard B. Rood Applying Local Discretization Methods in
the NASA Finite-Volume General
Circulation Model . . . . . . . . . . . 49--54
Johann Feichter and
Martin Schultz and
Thomas Diehl Modeling Chemical Constituents of the
Atmosphere . . . . . . . . . . . . . . . 56--63
Vicky Pope and
Terry Davies Testing and Evaluating Atmospheric
Climate Models . . . . . . . . . . . . . 64--69
Geoffrey Fox Message Passing: From Parallel Computing
to the Grid . . . . . . . . . . . . . . 70--73
Richard R. Silbar Web Delivery of Interactive
Laboratories: Comparing Three Authoring
Tools . . . . . . . . . . . . . . . . . 74--78
David H. Bailey and
George Cybenko Book and Web Reviews: A Reclusive Kind
of Science; A New Kind of Teleology . . 79--83
Paul F. Dubois Designing Scientific Components . . . . 84--90
Julian V. Noble The Right Angle: Precise Numerical
Orthogonality in Eigenstates . . . . . . 91--96, c3
Francis Sullivan EWD: Making It Simple Is Not Easy . . . 2--3
David Lewin Vintage Computing . . . . . . . . . . . 4--10
Douglas Tougaw The Samsung SVP-6000 Presents Several
Benefits . . . . . . . . . . . . . . . . 11--13
Fionn Murtagh and
Jean-Luc Starck and
Mireille Louys Distributed Visual Information
Management in Astronomy . . . . . . . . 14--23
Reiko Suzuki and
Hiroshi Sato and
Mineo Kimura Antiproton-Hydrogen Atom Collision at
Intermediate Energy . . . . . . . . . . 24--33
Xing Dongshan and
Shen Junyi A New Markov Model For Web Access
Prediction . . . . . . . . . . . . . . . 34--39
D. E. Stevenson The Michelson--Morley Experiment: A Case
Study in Validation . . . . . . . . . . 40--51
Fahri Basegmez Extending Scientific Application with
Scripting Capabilities . . . . . . . . . 52--59
Hai Zhuge Clustering Soft-Devices in the Semantic
Grid . . . . . . . . . . . . . . . . . . 60--62
Charles Patterson Two Approaches to Teaching Computational
Physics . . . . . . . . . . . . . . . . 64--68
Isabel Beichl Dealing with Degeneracy in Triangulation 70--74
Marco Lanzagorta Interactive Visualization of a
High-Resolution Reconstruction of the
Moon . . . . . . . . . . . . . . . . . . 78--82
Anonymous 2002 Annual Index . . . . . . . . . . . 83, C3
Francis Sullivan From the Editors: Frankenstein Jr. . . . 2--3
David I. Lewin and
Greg Goth News . . . . . . . . . . . . . . . . . . 4--13
Don Shirer Out on a LIMS (And Other Arboreal
Features) . . . . . . . . . . . . . . . 14--16
Nancy Forbes and
Mike Foster Guest Editors' Introduction: The End of
Moore's Law? . . . . . . . . . . . . . . 18--19
James D. Meindl Beyond Moore's Law: The Interconnect Era 20--24
Thomas N. Theis Beyond the Silicon Transistor: Personal
Observations . . . . . . . . . . . . . . 25--29
Charles Wessner Sustaining Moore's Law and the US
Economy . . . . . . . . . . . . . . . . 30--38
Keith Stein and
Tayfun Tezduyar and
Richard Benney Computational Methods for Modeling
Parachute Systems . . . . . . . . . . . 39--46
April K. Andreas and
Isabel Beichl Estimating the Work in Integer
Partitioning . . . . . . . . . . . . . . 48--56
Geoffrey Fox Java and Grande Applications . . . . . . 60--62
Ulrich H. E. Hansmann Protein Folding in Silico: An Overview 64--69
Thilo Ernst and
Tom Rother and
Franz Schreier and
Jochen Wauer and
Wolfgang Balzer DLR's VirtualLab: Scientific Software
Just a Mouse Click Away . . . . . . . . 70--79
Dario Benedetto and
Emanuele Caglioti and
Vittorio Loreto Zipping Out Relevant Information . . . . 80--85
Peter M. Ketcham and
David L. Feder Visualizing Bose--Einstein Condensates 86--89
Mario Belloni and
Wolfgang Christian Physlets for Quantum Mechanics . . . . . 90--96, c3
Francis Sullivan From the Editors: Less Is More (Is Less) 3--3
Pam Frost Gorder and
Anne Jacobson News . . . . . . . . . . . . . . . . . . 4--8
L. Alan Kraft Making Home DVDs: Dell's Movie Studio
Bundle . . . . . . . . . . . . . . . . . 9--10
Jim X. Chen and
Aiichiro Nakano Guest Editors' Introduction:
High-Dimensional Data Acquisition,
Computing, and Visualization . . . . . . 12--13
Alexander Hinneburg and
Daniel Keim and
Markus Wawryniuk Using Projections to Visually Cluster
High-Dimensional Data . . . . . . . . . 14--25
Ashish Sharma and
Rajiv K. Kalia and
Aiichiro Nakano and
Priya Vashishta Large Multidimensional Data
Visualization for Materials Science . . 26--33
Kwan-Liu Ma Visualizing Time-Varying Volume Data . . 34--42
Ruixin Yang and
Menas Kafatos and
Brian Doty and
James L. Kinter, III and
Long Pham A Distributed Enhanced Server for
Multidimensional Scientific Data . . . . 44--52
Yonggao Yang and
Jim X. Chen and
Woosung Kim and
Changjin Kee Nonlinear Projection: Using Deformations
in $3$D Viewing . . . . . . . . . . . . 54--59
Kurt Binder and
Jürgen Horbach and
Walter Kob and
Anke Winkler The Interplay Between Structure and
Ionic Motions in Glasses . . . . . . . . 60--66
Geoffrey Fox Grid Computing Environments . . . . . . 68--72
Bert W. Rust Fitting Nature's Basic Functions. Part
IV: The Variable Projection Algorithm 74--79
Kevin Craig The Role of Computers in Mechatronics 80--85
Bruce M. Boghosian A Look at Lattice Boltzmann Equations 86--87
Teresa L. Cottom Using SWIG to Bind C++ to Python . . . . 88--96, c3
Francis Sullivan How Right You Are! . . . . . . . . . . . 2--3
Pam Frost Gorder and
Anne Jacobson News . . . . . . . . . . . . . . . . . . 4--8
Norman Chonacky and
Dante Choi Science and Engineering Databases in an
Open-Source Software World . . . . . . . 10--13
Norman Chonacky Guest Editor's Introduction: Scientific
Databases . . . . . . . . . . . . . . . 14--15
Cornelia Büchen-Osmond The Universal Virus Database ICTVdB . . 16--25
Stephen W. Gaarenstroom Surface Science Spectra: A Hybrid
Journal-Database . . . . . . . . . . . . 26--30
Roman Dial and
Barbara Bond and
Judith Bayard Cushing and
Nalini Nadkarni How Trees and Forests Inform
Biodiversity and Ecosystem Informatics 32--43
James D. Myers and
Alan Chappell and
Matthew Elder and
Al Geist and
Jens Schwidder Re-Integrating the Research Record . . . 44--50
Shiang-Woei Chyuan and
Yunn-Shiuan Liao and
Jeng-Tzong Chen An Efficient Method for Solving
Electrostatic Problems . . . . . . . . . 52--58
Bryan Carpenter and
Geoffrey Fox HPJava: A Data Parallel Programming
Alternative . . . . . . . . . . . . . . 60--64
Robert C. Kirby A New Look at Expression Templates for
Matrix Computation . . . . . . . . . . . 66--70
Dietrich Stauffer Sociophysics Simulations . . . . . . . . 71--75
Julian V. Noble Recurses! . . . . . . . . . . . . . . . 76--81
James G. Nagy and
Dianne P. O'Leary Image Deblurring: I Can See Clearly Now 82--84
Jim X. Chen New Graphics Pipeline Approach Speeds Up
Atomic Primitives Rendering . . . . . . 86--88, c3
Francis Sullivan Computational Science: We'll Know It
When We See It . . . . . . . . . . . . . 2--2
Anne Jacobson and
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 3--7
Doug Tougaw and
Jeff Will Visualizing the Future of Virtual
Reality . . . . . . . . . . . . . . . . 8--11
William L. Hase and
Gustavo E. Scuseria Guest Editors' Introduction:
Computational Chemistry . . . . . . . . 12--13
Stefan Goedecker and
Gustavo E. Scuseria Linear Scaling Electronic Structure
Methods in Chemistry and Physics . . . . 14--21
Robert E. Wyatt and
Eric R. Bittner Using Quantum Trajectories and Adaptive
Grids to Solve Quantum Dynamical
Problems . . . . . . . . . . . . . . . . 22--30
Srinivasan S. Iyengar and
Christian J. Burnham and
Matt K. Petersen and
Gregory A. Voth Modeling Condensed-Phase Chemistry
Through Molecular Dynamics Simulation 31--35
William L. Hase and
Kihyung Song and
Mark S. Gordon Direct Dynamics Simulations . . . . . . 36--44
Christoph Lossen Singular: A Computer Algebra System . . 45--55
R. Bowen Loftin Multisensory Perception: Beyond the
Visual in Visualization . . . . . . . . 56--58
John Reid The Future of Fortran . . . . . . . . . 59--67
Dianne O'Leary and
Yalin E. Sagduyu Robot Control: Swinging Like a Pendulum 68--74
Muhammad Sahimi Large-Scale Porous Media and Wavelet
Transformations . . . . . . . . . . . . 75--87
David M. Smith Using Multiple-Precision Arithmetic . . 88--93
Geoffrey Fox Integrating Computing and Information on
Grids . . . . . . . . . . . . . . . . . 94--96
Francis Sullivan From the Editors: Reproduced and
Reproducible Results . . . . . . . . . . 3--4
Anne Jacobson News . . . . . . . . . . . . . . . . . . 6--9
Joseph DiDio, III Opening Doors with OpenOffice.org . . . 10--13
Aiichiro Nakano and
Jim X. Chen Guest Editors' Introduction:
High-Dimensional Data Acquisition,
Computing, and Visualization . . . . . . 14--15
Ani Thakar and
Alex Szalay and
Peter Kunszt and
Jim Gray Migrating a Multiterabyte Archive from
Object to Relational Databases . . . . . 16--29
Kerby Shedden and
Ker-Chau Li Dimension Reduction and Spatiotemporal
Regression: Applications to Neuroimaging 30--36
Yonggao Yang and
Jim X. Chen and
Woosung Kim Gene Expression Clustering and $3$D
Visualization . . . . . . . . . . . . . 37--43
François Major Building Three-Dimensional Ribonucleic
Acid Structures . . . . . . . . . . . . 44--53
Nargess Memarsadeghi and
Dianne P. O'Leary Classified Information: The Data
Clustering Problem . . . . . . . . . . . 54--60
Joan Adler Visualization in Atomistic and Spin
Simulations . . . . . . . . . . . . . . 61--65
James A. Ballas and
Derek Brock and
Justin Nevitt Using Audio to Enhance Information Tasks 66--71
George L. Donohue Undergraduate Use of Complex Simulation
Tools for Airspace Design . . . . . . . 72--75
Geoffrey Fox Data and Metadata on the Semantic Grid 76--78
John B. Rundle Scaling and Critical Phenomena In Nature 80--82
Paul F. Dubois and
Thomas Epperly and
Gary Kumfert Why Johnny Can't Build . . . . . . . . . 83--88
Francis Sullivan From the Editors: Ask the Hard Questions 3--5
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 6--9
Doug Tougaw National Instruments Records a Hit with
ELVIS . . . . . . . . . . . . . . . . . 10--12
Matthew A. Kupinski Guest Editor's Introduction: Computing
in Optics . . . . . . . . . . . . . . . 13--14
Aramais R. Zakharian and
Jerome V. Moloney and
Masud Mansuripur Simulating Near-Field Effects in
High-Density Optical-Disk Data Storage 15--21
Kurt Edmund Oughstun Computational Methods in Ultrafast
Time-Domain Optics . . . . . . . . . . . 22--32
Martin Schweiger and
Adam Gibson and
Simon R. Arridge Computational Aspects of Diffuse Optical
Tomography . . . . . . . . . . . . . . . 33--41
E. Keith Hege and
Stuart M. Jefferies and
Michael Lloyd-Hart Computing and Telescopes at the
Frontiers of Optical Astronomy . . . . . 42--51
Jacob Kogan and
Charles Nicholas and
Vladimir Volkovich Text Mining with Information-Theoretic
Clustering . . . . . . . . . . . . . . . 52--59
Dianne P. O'Leary and
Nargess Memarsadeghi The Direction-of-Arrival Problem: Coming
at You . . . . . . . . . . . . . . . . . 60--70
Jeffrey N. Johnson and
Paul F. Dubois Issue Tracking . . . . . . . . . . . . . 71--77
Lucilla de Arcangelis Modeling the Sol-Gel Transition . . . . 78--87
Anonymous Computing in Science & Engineering 2003
Annual Index, Volume 5 . . . . . . . . . 88--91
Michael E. Peskin Numerical Problem Solving for
Undergraduate Core Courses . . . . . . . 92--96, C3
Francis Sullivan From the Editors: Say Every Word on
Every Slide . . . . . . . . . . . . . . 3--4
Joseph DiDio, III and
Norman Chonacky Caveat Emptor: What to Know Before
Trying to Beat a Consumer System into a
Scientific Instrument . . . . . . . . . 5--11
Ghassem R. Asrar Guest Editor's Introduction: A Pathway
to Decisions on Earth's Environment and
Natural Resources . . . . . . . . . . . 13--16
Chris Hill and
Cecelia DeLuca and
Balaji and
Max Suarez and
Arlindo da Silva The Architecture of the Earth System
Modeling Framework . . . . . . . . . . . 18--28
Shian-Jiann Lin and
Robert Atlas and
Kao-San Yeh Global Weather Prediction and High-End
Computing at NASA . . . . . . . . . . . 29--34
Andrea Donnellan and
John Rundle and
John Ries and
Geoffrey Fox and
Marlon Pierce and
Jay Parker and
Robert Crippen and
Eric DeJong and
Ben Chao and
Weijia Kuang and
Dennis McLeod and
Mitsuhiro Matu'ura and
Jeremy Bloxham Illuminating Earth's Interior through
Advanced Computing . . . . . . . . . . . 36--44
Roger L. King and
Ronald J. Birk Developing Earth System Science
Knowledge to Manage Earth's Natural
Resources . . . . . . . . . . . . . . . 45--51
Chris Hoffmann and
Voicu Popescu and
Sami Kilic and
Mete Sozen Modeling, Simulation, and Visualization:
The Pentagon on September 11th . . . . . 52--60
Andrzej Pekalski A Short Guide to Predator--Prey Lattice
Models . . . . . . . . . . . . . . . . . 62--66
Dianne P. O'Leary Models of Infection: Person to Person 68--73
George K. Thiruvathukal and
David Beazley XML and Computational Science . . . . . 74--80
Fernando Díez and
Roberto Moriyón Solving Mathematical Exercises that
Involve Symbolic Computations . . . . . 81--84
Marjorie G. Hahn New Exposition on Probability and
Statistics . . . . . . . . . . . . . . . 85--88
Chris Harding Modeling Geoscience Data in a
Multisensory Virtual Environment . . . . 89--92
Marlon Pierce and
Geoffrey Fox Making Scientific Applications as Web
Services . . . . . . . . . . . . . . . . 93--96
Francis Sullivan From the Editors: Sez Who? . . . . . . . 4--5
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 6--11
Douglass Post Guest Editor's Introduction: Frontiers
of Simulation . . . . . . . . . . . . . 12--13
Tamas I. Gombosi and
Kenneth G. Powell and
Darren L. De Zeeuw and
C. Robert Clauer and
Kenneth C. Hansen and
Ward B. Manchester and
Aaron J. Ridley and
Ilia I. Roussev and
Igor V. Sokolov and
Quentin F. Stout and
Gábor Tóth Solution-Adaptive Magnetohydrodynamics
for Space Plasmas: Sun-to-Earth
Simulations . . . . . . . . . . . . . . 14--35
Fernando F. Grinstein and
Christer Fureby From Canonical to Complex Flows: Recent
Progress on Monotonically Integrated LES 36--49
Dianne P. O'Leary More Models of Infection: It's Epidemic 50--56
Leo P. Kadanoff Excellence in Computer Simulation . . . 57--67
Rubin H. Landau Computational Physics for
Undergraduates: The CPUG Degree Program
at Oregon State University . . . . . . . 68--75
Eugenio Roanes-Lozano and
Eugenio Roanes-Macías and
Luis M. Laita The Geometry of Algebraic Systems and
Their Exact Solving Using Gröbner Bases 76--79
Michael Creutz Simulating Quarks . . . . . . . . . . . 80--85
George K. Thiruvathukal and
Konstantin Läufer Natural XML for Data Binding,
Processing, and Persistence . . . . . . 86--92
Geoffrey Fox Software Development Around a
Millisecond . . . . . . . . . . . . . . 93--96
Francis Sullivan From the Editors: Computational Science
and Pathological Science . . . . . . . . 2--3
Pam Frost Gorder and
Lissa E. Harris News . . . . . . . . . . . . . . . . . . 4--7
Norman Chonacky Stella: Growing Upward, Downward, and
Outward . . . . . . . . . . . . . . . . 8--15
Douglass Post Guest Editor's Introduction: Frontiers
of Simulation, Part II . . . . . . . . . 16--17
C. L. Winter and
Everett P. Springer and
Keeley Costigan and
Patricia Fasel and
Sue Mniewski and
George Zyvoloski Virtual Watersheds: Simulating the Water
Balance of the Rio Grande Basin . . . . 18--26
Rainald Löhner and
Juan Cebral and
Chi Yang and
Joseph D. Baum and
Eric Mestreau and
Charles Charman and
Daniele Pelessone Large-Scale Fluid-Structure Interaction
Simulations . . . . . . . . . . . . . . 27--37
Ricardo Cortez and
Lisa Fauci and
Nathaniel Cowen and
Robert Dillon Simulation of Swimming Organisms:
Coupling Internal Mechanics with
External Fluid Dynamics . . . . . . . . 38--45
Galen R. Gisler and
Robert P. Weaver and
Charles L. Mader and
Michael L. Gittings Two- and Three-Dimensional Asteroid
Impact Simulations . . . . . . . . . . . 46--55
Eugenio Roanes-Lozano and
Eugenio Roanes-Macías and
Luis M. Laita Some Applications of Gröbner Bases . . . 56--60
Jonathan C. Roberts Visualization Equivalence for
Multisensory Perception: Learning from
the Visual . . . . . . . . . . . . . . . 61--65
By Dianne P. O'Leary Fitting Exponentials: An Interest in
Rates . . . . . . . . . . . . . . . . . 66--72
Suzana Moss de Oliveira and
Jorge S. Sá Martins and
Paulo Murilo C. de Oliveira and
Karen Luz-Burgoa and
Armando Ticona and
Thadeu J. P. Penna The Penna Model for Biological Aging and
Speciation . . . . . . . . . . . . . . . 74--81
Guy Ashkenazi and
Ronnie Kosloff String, Ring, Sphere: Visualizing
Wavefunctions on Different Topologies 82--86
Glenn Downing and
Paul F. Dubois and
Teresa Cottom Data Sharing in Scientific Simulations 87--96
Francis Sullivan From the Editors: P $\not=$ NP . . . . . 2
Anonymous Letters to the Editors . . . . . . . . . 3--5
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 6--9
Athena I. Vakali and
Georgios I. Papadimitriou Guest Editors' Introduction: Web
Engineering--The Evolution of New
Technologies . . . . . . . . . . . . . . 10--11
Juliana Freire and
Michael Benedikt Managing XML Data: An Abridged Overview 12--19
Demetrios Zeinalipour-Yazti and
Vana Kalogeraki and
Dimitrios Gunopulos Information Retrieval Techniques for
Peer-to-Peer Networks . . . . . . . . . 20--26
Elisa Bertino and
Elena Ferrari and
Anna Squicciarini Trust Negotiations: Concepts, Systems,
and Languages . . . . . . . . . . . . . 27--34
Noureddine Boudriga and
Mohammad S. Obaidat Intelligent Agents on the Web: A Review 35--42
Jaroslav Pokorný Web Searching and Information Retrieval 43--48
Pranam Kolari and
Anupam Joshi Web Mining: Research and Practice . . . 49--53
Jianliang Xu and
Jiangchuan Liu and
Bo Li and
Xiaohua Jia Caching and Prefetching for Web Content
Distribution . . . . . . . . . . . . . . 54--59
Antonio Leal and
Franciso Sánchez-Doblado and
María Perucha and
Ester Carrasco and
Magnolia Rincón and
Rafael Arrans and
Carlos Bernal Monte Carlo Simulation of Complex
Radiotherapy Treatments . . . . . . . . 60--68
Yonggao Yang and
Changqian Zhu and
Hua Zhang Real-Time Simulation: Water Droplets on
Glass Windows . . . . . . . . . . . . . 69--73
Dianne P. O'Leary Elastoplastic Torsion: Twist and Stress 74--83
Geoffrey Fox Grids of Grids of Simple Services . . . 84--87
George K. Thiruvathukal and
Konstantin Läufer Plone and Content Management . . . . . . 88--95
Peter Love Book Reviews . . . . . . . . . . . . . . 97--99
Rodrigo Carboni and
Francisco Frutos-Alfaro PCell: A $2$D Program for Visualizing
Convective Plasma Cells . . . . . . . . 101--104
Francis Sullivan From the Editors: The Future Ain't What
It Used to Be . . . . . . . . . . . . . 3
Lissa E. Harris News . . . . . . . . . . . . . . . . . . 4--7
Timothy Trucano and
Douglass Post Guest Editors' Introduction:
Verification and Validation in
Computational Science and Engineering 8--9
Alan Calder and
Jonathan Dursi and
Bruce Fryxell and
Tomek Plewa and
Greg Weirs and
Todd Dupont and
Harry Robey and
Jave Kane and
Bruce Remington and
Frank Timmes and
Guy Dimonte and
John Hayes and
Mike Zingale and
Paul Drake and
Paul Ricker and
Jim Stone and
Kevin Olson Validating Astrophysical Simulation
Codes . . . . . . . . . . . . . . . . . 10--20
David W. Pierce Beyond the Means: Validating Climate
Models with Higher-Order Statistics . . 22--29
Patrick J. Roache Building PDE Codes to be Verifiable and
Validatable . . . . . . . . . . . . . . 30--38
Robert F. Benjamin An Experimenter's Perspective on
Validating Codes and Models with
Experiments Having Shock-Accelerated
Fluid Interfaces . . . . . . . . . . . . 40--49
Wilfried N. Gansterer and
Yihua Bai and
Robert M. Day and
Robert C. Ward A Framework for Approximating Eigenpairs
in Electronic Structure Computations . . 50--59
Dianne P. O'Leary and
David A. Schug Achieving a Common Viewpoint: Yaw,
Pitch, and Roll . . . . . . . . . . . . 60--65
George K. Thiruvathukal Gentoo Linux: The Next Generation of
Linux . . . . . . . . . . . . . . . . . 66--74
Jonathan Chin and
Peter V. Coveney and
Shantenu Jha The Current State of the Grid . . . . . 75--77
Jan J. Zebrowski and
Rafal Baranowski Nonlinear Instabilities and
Nonstationarity in Human Heart-Rate
Variability . . . . . . . . . . . . . . 78--83
André Skupin A Picture from a Thousand Words . . . . 84--88
Francis Sullivan From the Editors: Good, Bad, or
Indifferent? . . . . . . . . . . . . . . 3
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 4--7
Charles J. Holland and
Robert E. Peterkin Jr. Guest Editors' Introduction:
High-Performance Computing . . . . . . . 8--10
Jerry Bernholc and
Serge M. Nakhmanson and
Marco Buongiorno Nardelli and
Vincent Meunier Understanding and Enhancing Polarization
in Complex Materials . . . . . . . . . . 12--21
Thomas S. Anderson and
Mark L. Moran and
Stephen A. Ketcham and
James Lacombe Tracked Vehicle Simulations and Seismic
Wavefield Synthesis in Seismic Sensor
Systems . . . . . . . . . . . . . . . . 22--28
Robert Hansen and
James Forsythe A Grid Convergence Study of a Highly
Separated Turbulent Flow . . . . . . . . 30--37
Donghyun You and
Meng Wang and
Parviz Moin and
Rajat Mittal Study of Tip-Clearance Flow in
Turbomachines Using Large-Eddy
Simulation . . . . . . . . . . . . . . . 38--46
Timothy J. Madden and
James H. Miller Simulation of Unsteadiness in Chemical
Oxygen-Iodine Laser Flowfields . . . . . 47--54
Dianne P. O'Leary Multidimensional Integration: Partition
and Conquer . . . . . . . . . . . . . . 58--66
Paul Dubois Cafe Dubois, Polling Place Edition . . . 67--71
Desmond J. Higham Black-Scholes for Scientific Computing
Students . . . . . . . . . . . . . . . . 72--79
Donald A. Washburn and
Lauriann M. Jones Could Olfactory Displays Improve Data
Visualization? . . . . . . . . . . . . . 80--83
Debora Donato and
Luigi Laura and
Stefano Leonardi and
Stefano Millozzi Simulating the Webgraph: A Comparative
Analysis of Models . . . . . . . . . . . 84--89
Anonymous 2004 Annual Index . . . . . . . . . . . 91--96
Norman Chonacky From the Editors: An Evolving Mission 3--4
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 5--7
Norman Chonacky and
David Winch Maple, Mathematica, and Matlab: The 3M's
without the Tape . . . . . . . . . . . . 8--16
Bruce Boghosian A Crash Course on Computing . . . . . . 17--20
Anonymous Special Thanks to CiSE's Reviewers . . . 21
Yingping Huang and
Xiaorong Xiang and
Gregory Madey and
Steve E. Cabaniss Agent-Based Scientific Simulation . . . 22--29
Tsutomu Saito and
Kazuyoshi Takayama Applying Shock-Wave Research to
Volcanology . . . . . . . . . . . . . . 30--35
Robert W. Keyes After the Transistor, the Qubit? . . . . 36--41
Dror G. Feitelson The Supercomputer Industry in Light of
the Top500 Data . . . . . . . . . . . . 42--47
Zhigen Xu and
Yusong Yan and
Jim X. Chen OpenGL Programming in Java . . . . . . . 51--55
Dianne P. O'Leary Blind Deconvolution: Errors, Errors
Everywhere . . . . . . . . . . . . . . . 56--63
Ioannis N. Athanasiadis and
Pericles A. Mitkas Social Influence and Water Conservation:
An Agent-Based Approach . . . . . . . . 65--70
Hasan Dag and
Gürkan Soykan and
Senol Piskin and
Osman Yasar Computational Science and Engineering at
Istanbul Technical University . . . . . 72--77
Steven Knight Building Software with SCons . . . . . . 79--88
Norman Chonacky Staking New Ground . . . . . . . . . . . 3--4
Pam Frost Gorder Digital Detectives Reveal Art Forgeries 5--8
Norman Chonacky and
David Winch Reviews of Maple, Mathematica, and
Matlab: Coming Soon to a Publication
Near You . . . . . . . . . . . . . . . . 9--10
George K. Thiruvathukal Guest Editors' Introduction: Cluster
Computing . . . . . . . . . . . . . . . 11--13
Matthias K. Gobbert Configuration and Performance of a
Beowulf Cluster for Large-Scale
Scientific Simulations . . . . . . . . . 14--26
Dean E. Dauger and
Viktor K. Decyk Plug-and-Play Cluster Computing:
High-Performance Computing for the
Mainstream . . . . . . . . . . . . . . . 27--33
Philip Hatcher and
Mathew Reno and
Gabriel Antoniu and
Luc Bougé Cluster Computing with Java . . . . . . 34--39
James D. Teresco and
Jamal Faik and
Joseph E. Flaherty Resource-Aware Scientific Computation on
a Heterogeneous Cluster . . . . . . . . 40--50
Jack Dongarra and
Thomas Sterling and
Horst Simon and
Erich Strohmaier High-Performance Computing: Clusters,
Constellations, MPPs, and Future
Directions . . . . . . . . . . . . . . . 51--59
Dianne P. O'Leary Blind Deconvolution: A Matter of Norm 60--66
Gigi Karmous-Edwards Global E-Science Collaboration . . . . . 67--74
Pei-Dong Dai and
Tian-Yu Zhang and
Zheng-Min Wang and
Jim X. Chen and
Ke-Qiang Wang A Virtual Laboratory for Temporal Bone
Microanatomy . . . . . . . . . . . . . . 75--79
Denis Donnelly and
Bert Rust The Fast Fourier Transform for
Experimentalists, Part I: Concepts . . . 80--88
Norman Chonacky The Way Forward: Learning from Our Past 2
Pam Frost Gorder Computing Life's Family Tree . . . . . . 3--6
Norman Chonacky and
David Winch 3Ms for Instruction: Reviews of Maple,
Mathematica, and Matlab . . . . . . . . 7--13
Daniel M. Tartakovsky and
Francis J. Alexander Guest Editors' Introduction:
Multiphysics Modeling . . . . . . . . . 14--15
Dongbin Xiu and
Ioannis G. Kevrekidis and
Roger Ghanem An Equation-Free, Multiscale Approach to
Uncertainty Quantification . . . . . . . 16--23
Daniel F. Martin and
Phillip Colella and
Marian Anghel and
Francis J. Alexander Adaptive Mesh Refinement for Multiscale
Nonequilibrium Physics . . . . . . . . . 24--31
Francis J. Alexander and
Daniel M. Tartakovsky and
Alejandro L. Garcia Noise in Algorithm Refinement Methods 32--38
Vasileios Symeonidis and
George Em Karniadakis and
Bruce Caswell A Seamless Approach to Multiscale
Complex Fluid Simulation . . . . . . . . 39--46
James M. Hyman Patch Dynamics for Multiscale Problems 47--53
David H. Bailey High-Precision Floating-Point Arithmetic
in Scientific Computation . . . . . . . 54--61
George F. Viamontes and
Igor L. Markov and
John P. Hayes Is Quantum Search Practical? . . . . . . 62--70
Denis Donnelly and
Bert Rust The Fast Fourier Transform for
Experimentalists . . . . . . . . . . . . 71
Dianne P. O'Leary Finite Differences and Finite Elements:
Getting to Know You . . . . . . . . . . 72--79
Paul F. Dubois Maintaining Correctness in Scientific
Programs . . . . . . . . . . . . . . . . 80--85
Kerstin Hoef-Emden Molecular Phylogenetic Analyses and
Real-Life Data . . . . . . . . . . . . . 86--91
Beifang Yi and
Frederick C. Harris Jr. and
Ling Wang and
Yusong Yan Real-Time Natural Hand Gestures . . . . 92--96, c3
N. Chonacky Over-the-Horizon: Not Just for Radar
Anymore . . . . . . . . . . . . . . . . 4--5
N. Chonacky and
D. Winch 3Ms for Instruction, Part 2: Maple,
Mathematica, and Matlab . . . . . . . . 14--23
J. B. Rundle Guest Editor's Introduction:
iSERVO---The International Solid Earth
Research Virtual Observatory . . . . . . 24--26
P. Mora and
H. Muhlhaus and
L. Gross and
Huilin Xing and
D. Weatherly and
S. Abe and
S. Latham and
L. Moresi ACcESS: Australia's contribution to the
iSERVO Institute's development . . . . . 27--37
Xiang-Chu Yin and
Zhonghua Lu and
Xuebin Chi and
Huihui Zhang The China ACES-iSERVO grid node . . . . 38--42
M. Matsu'ura Quest for predictability of geodynamic
processes through computer simulation 43--50
L. B. Grant and
M. M. Gould and
A. Donnellan and
D. McLeod and
A. Yun-An Chen and
Sang-Soo Sung and
M. Pierce and
G. C. Fox and
P. Rundle A Web services-based universal approach
to heterogeneous fault databases . . . . 51--57
A. W. Isenor and
J. R. Keeley Modeling generic oceanographic data
objects in XML . . . . . . . . . . . . . 58--66
F. Sullivan Book Review: Is that Your Final Answer? 67--67
D. P. O'Leary Eigenvalues: valuable principles . . . . 68--70
J. Behrens Adaptive atmospheric modeling:
scientific computing at its best . . . . 76--83
M. Tobis PyNSol: objects as scaffolding . . . . . 84--91
D. Donnelly and
B. Rust The Fast Fourier Transform for
experimentalists. Part II. Convolutions 92--95
F. Sullivan Let a Hundred Flowers Bloom and a
Hundred Schools of Thought Contend! . . 96--96
N. Chonacky Lots of Headroom . . . . . . . . . . . . 2--2
N. Chonacky and
D. Winch 3Ms: A Response . . . . . . . . . . . . 7--9
B. Boghosian and
P. Coveney Guest Editors' Introduction: Scientific
Applications of Grid Computing . . . . . 10--13
Suchuan Dong and
G. E. Karniadakis and
N. T. Karonis Cross-Site Computations on the TeraGrid 14--23
J. Chin and
M. J. Harvey and
S. Jha and
P. V Coveney Scientific Grid Computing: The First
Generation . . . . . . . . . . . . . . . 24--32
B. Plale and
D. Gannon and
Yi Huang and
G. Kandaswamy and
S. Lee Pallickara and
A. Slominski Cooperating Services for Data-Driven
Computational Experimentation . . . . . 34--43
Dali Wang and
E. Carr and
L. J. Gross and
M. W. Berry Toward Ecosystem Modeling on Computing
Grids . . . . . . . . . . . . . . . . . 44--52
J. Fernandez and
S. Li Anisotropic Nonlinear Filtering of
Cellular Structures in Cryoelectron
Tomography . . . . . . . . . . . . . . . 54--61
D. P. O'Leary Solving Sparse Linear Systems: Taking
the Direct Approach . . . . . . . . . . 62--70
Lin Yang and
J. X. Chen and
Yanling Liu Virtual Human Anatomy . . . . . . . . . 71--73
B. Rust and
D. Donnelly The Fast Fourier Transform for
Experimentalists. Part III: Classical
Spectral Analysis . . . . . . . . . . . 74--78
K. Laufer A Hike through Post-EJB J2EE Web
Application Architecture . . . . . . . . 80--88
A. Hansen Physics and Fracture . . . . . . . . . . 90--95
D. P. O'Leary George Dantzig: A Remembrance . . . . . 96--96
Norman Chonacky From the Editors: This Is the Year that
Was . . . . . . . . . . . . . . . . . . 4
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 6--9
Bruce M. Boghosian and
Peter V. Coveney Guest Editors' Introduction: Scientific
Applications of Grid Computing, Part II 10--11
Kelvin K. Droegemeier and
Dennis Gannon and
Daniel Reed and
Beth Plale and
Jay Alameda and
Tom Baltzer and
Keith Brewster and
Richard Clark and
Ben Domenico and
Sara Graves and
Everette Joseph and
Donald Murray and
Rahul Ramachandran and
Mohan Ramamurthy and
Lavanya Ramakrishnan and
John A. Rushing and
Daniel Weber and
Robert Wilhelmson and
Anne Wilson and
Ming Xue and
Sepideh Yalda Service-Oriented Environments for
Dynamically Interacting with Mesoscale
Weather . . . . . . . . . . . . . . . . 12--29
Richard P. Bruin and
Martin T. Dove and
Mark Calleja and
Matthew G. Tucker Building and Managing the eMinerals
Clusters: A Case Study in Grid-Enabled
Cluster Operation . . . . . . . . . . . 30--37
Harvey Newman and
Richard Cavanaugh and
Julian James Bunn and
Iosif Legrand and
Steven H. Low and
Dan Nae and
Sylvain Ravot and
Conrad D. Steenberg and
Xun Su and
Michael Thomas and
Frank van Lingen and
Yang Xia and
Shawn McKee The UltraLight Project: The Network as
an Integrated and Managed Resource for
Data-Intensive Science . . . . . . . . . 38--47
Sauro Succi and
Federico Toschi and
Mario P. Tosi and
Patrizia Vignolo Bose--Einstein Condensates and the
Numerical Solution of the
Gross--Pitaevskii Equation . . . . . . . 48--57
George H. Rawitscher and
Israel Koltracht An Efficient Numerical Spectral Method
for Solving the Schrödinger Equation . . 58--66
Maxi San Miguel and
Victor M. Eguíluz and
Raul Toral and
Konstantin Klemm Binary and Multivariate Stochastic
Models of Consensus Formation . . . . . 67--73
Dianne P. O'Leary Fast Solvers and Sylvester Equations:
Both Sides Now . . . . . . . . . . . . . 74--80
Paul F. Dubois A Nest of Pythons . . . . . . . . . . . 81--84
Bert Rust and
Denis Donnelly The Fast Fourier Transform for
Experimentalists, Part IV:
Autoregressive Spectral Analysis . . . . 85--90
Anonymous 2005 Annual Index, Computing in Science
and Engineering, Volume 7, Number 6 . . 91--95
Paul F. Dubois Bean-Counted Research Is Smelly . . . . 96
Norman Chonacky The Spread Spectrum in Computing . . . . 2--3
Pam Frost Gorder En Route to Artificial Intelligence,
Software Learns Language . . . . . . . . 4--7
Tobias Haist and
Marcus Reicherter and
Min Wu and
Lars Seifert Using Graphics Boards to Compute
Holograms . . . . . . . . . . . . . . . 8--13
Norman Chonacky Special Thanks to CiSE's Peer Reviewers 14
Steven Gottlieb Guest Editor's Introduction:
Special-Purpose Computing . . . . . . . 15--17
Francesco Belletti and
Sebastiano Fabio Schifano and
Raffaele Tripiccione and
François Bodin and
Philippe Boucaud and
Jacques Micheli and
Olivier P\`ene and
France Nicola Cabibbo and
Sergio de Luca and
Alessandro Lonardo and
Davide Rossetti and
Piero Vicini and
Maxim Lukyanov and
Laurent Morin and
Norbert Paschedag and
Hubert Simma and
Vincent Morenas and
Dirk Pleiter and
Federico Rapuano Computing for LQCD: apeNEXT . . . . . . 18--29
Junichiro Makino The GRAPE Project . . . . . . . . . . . 30--40
Francesco Belletti and
Filippo Mantovani and
Giorgio Poli and
Sebastiano Fabio Schifano and
R. Tripiccione and
Isabel Campos and
Andres Cruz Flor and
Denis Navarro and
Sergio Perez Gaviro and
Daniele Sciretti and
Alfonso Tarancon and
José Luis Velasco and
Pedro Tellez and
Luis Antonio Fernandez and
Victor Martin-Mayor and
Antonio Munoz Sudupe and
Sergio Jimenez and
Andrea Maiorano and
Enzo Marinari and
Juan Jesus Ruiz-Lorenzo Ianus: An Adaptive FPGA Computer . . . . 41--49
Feng-Hsiung Hsu Chess Hardware in Deep Blue . . . . . . 50--60
Roeland M. H. Merks and
Alfons G. Hoekstra and
Jaap A. Kaandorp and
Peter M. A. Sloot and
Paulien Hogeweg Problem-Solving Environments for
Biological Morphogenesis . . . . . . . . 61--72
Raymond G. Jacquot and
Cameron H. G. Wright and
Thomas V. Edgar and
Robert F. Kubichek Visualization of Partial Differential
Equation Solutions . . . . . . . . . . . 73--77
Dianne P. O'Leary Computational Software: Writing Your
Legacy . . . . . . . . . . . . . . . . . 78--83
George K. Thiruvathukal Home Networking . . . . . . . . . . . . 84--91
Denis Donnelly The Fast Fourier Transform for
Experimentalists, Part V: Filters . . . 92--95
Francis Sullivan What Is It Like to Be a Bot? . . . . . . 96
Norman Chonacky And Now\ldots . . . . . . . . . . . . . 2
Sara Robinson Recent Research Provides New Picture of
Router-Level Internet . . . . . . . . . 3--6
Isabel Beichl and
Francis Sullivan Guest Editors' Introduction: Monte Carlo
Methods . . . . . . . . . . . . . . . . 7--8
Jacques G. Amar The Monte Carlo Method in Science and
Engineering . . . . . . . . . . . . . . 9--19
Erik Luijten Fluid Simulation with the Geometric
Cluster Monte Carlo Algorithm . . . . . 20--29
Dana Randall Rapidly Mixing Markov Chains with
Applications in Computer Science and
Physics . . . . . . . . . . . . . . . . 30--41
Isabel Beichl and
Francis Sullivan The Other Monte Carlo Method . . . . . . 42--47
Ben Shneiderman A Telescope for High-Dimensional Data 48--53
Mohammad Reza Rahimi Tabar and
Fatemeh Ghasemi and
Joachim Peinke and
Rudolf Friedrich and
Kamran Kaviani and
Fatemeh Taghavi and
Sara Sadeghi and
Golnoosh Bizhani and
Muhammad Sahimi New Computational Approaches to the
Analysis of Interbeat Intervals in Human
Subjects . . . . . . . . . . . . . . . . 54--65
Dianne P. O'Leary Updating and Downdating Matrix
Factorizations: A Change in Plans . . . 66--71
Denis Donnelly The Fast Fourier Transform for
Experimentalists, Part VI: Chirp of a
Bat . . . . . . . . . . . . . . . . . . 72--78
Konstantin Läufer A Hike through Post-EJB J2EE Web
Application Architecture, Part II . . . 79--87
Charles Day Engineering in Computing and Science . . 88
Norman Chonacky Evolution: It's not Just for Biology . . 2
Pam Frost Gorder Not Just for the Birds: Archiving
Massive Data Sets . . . . . . . . . . . 3--7
Rachel Kuske Noise and Signal Interaction . . . . . . 8--9
Grant Lythe and
Salman Habib Kink Stochastics . . . . . . . . . . . . 10--15
Gilles Hennenfent and
Felix J. Herrmann Seismic Denoising with Nonuniformly
Sampled Curvelets . . . . . . . . . . . 16--25
Edwin Kreuzer and
Wolfgang Sichermann The Effect of Sea Irregularities on Ship
Rolling . . . . . . . . . . . . . . . . 26--34
Rachel Kuske Multiple-Scales Approximation of a
Coherence Resonance Route to Chatter . . 35--43
James Brown Seeing into the Quantum World . . . . . 44--45
Norman Chonacky and
David Winch We're Listening to You! Results from Our
Recent Reader Survey . . . . . . . . . . 46--53
Dianne P. O'Leary Computer Memory and Arithmetic: A Look
under the Hood . . . . . . . . . . . . . 54--57
Dianne P. O'Leary Partial Solution to Last Issue's
Homework Assignment: Updating and
Downdating Matrix Factorizations: A
Change in Plans . . . . . . . . . . . . 58--59
Christian Schulze and
Dietrich Stauffer Recent Developments in Computer
Simulations of Language Competition . . 60--67
Hua Zhang and
Changqian Zhu and
Qiang Peng and
Jim X. Chen Using Geometric Algebra for $3$D Linear
Transformations . . . . . . . . . . . . 68--75
Osman Yasar and
Jose Maliekal and
Leigh J. Little and
Dawn Jones A Computational Technology Approach to
Education . . . . . . . . . . . . . . . 76--81
Paul Gray and
Thomas Murphy Something Wonderful this Way Comes . . . 82--87
Charles Day Turn on Your Computer and Simulate the
Future! . . . . . . . . . . . . . . . . 88
Norman Chonacky A Change of Landscape and a Broadened
Scope . . . . . . . . . . . . . . . . . 4--5
Pam Frost Gorder Computing in Biological Time: The Design
of an Anticocaine Molecule . . . . . . . 6--9
Aasim Azooz Analog Data Acquisition for Obtaining
I-V Characteristics Using Sound Cards 10--15
Martin Bernreuther and
Hans-Joachim Bungartz First Experiences with Group Projects in
CSE Education . . . . . . . . . . . . . 16--25
Mensur Omerbashich Gauss--Vanícek Spectral Analysis of the
Sepkoski Compendium: No New Life Cycles 26--30
Curt A. Moyer Numerical Solution of the Stationary
State Schrödinger Equation Using
Transparent Boundary Conditions . . . . 32--40
Zeng Zhe-Zhao and
Wang Yao-Nan and
Wen Hui Numerical Integration Based on a Neural
Network Algorithm . . . . . . . . . . . 42--48
Gregory R. Watson and
Nathan A. DeBardeleben Developing Scientific Applications Using
Eclipse . . . . . . . . . . . . . . . . 50--61
Bruce Mason Digital Libraries in Support of Science
Education: A Case for Computational
Physics . . . . . . . . . . . . . . . . 62--65
Robert Moorhead and
Chris Johnson and
Tamara Munzner and
Hanspeter Pfister and
Penny Rheingans and
Terry S. Yoo Visualization Research Challenges: A
Report Summary . . . . . . . . . . . . . 66--73
Dianne P. O'Leary Iterative Methods for Linear Systems:
Following the Meandering Way . . . . . . 74--80
Leonardo C. Ribeiro and
Ricardo M. Ruiz and
Eduardo M. Albuquerque and
Américo T. Bernardes Science in the Developing World: Running
Twice as Fast? . . . . . . . . . . . . . 81--87
Francis Sullivan Born to Compute . . . . . . . . . . . . 88
Norman Chonacky Has Computing Changed Physics Courses? 4--5
Pam Frost Gardner Digital Libraries Come of Age . . . . . 6--10
David Winch Guest Editor's Introduction: Computation
in Physics Courses . . . . . . . . . . . 11--15
Robert G. Fuller Numerical Computations in US
Undergraduate Physics Courses . . . . . 16--21
Rubin Landau Computational Physics: A Better Model
for Physics Education? . . . . . . . . . 22--30
Marty Johnston Implementing Curricular Change . . . . . 32--37
Jaime R. Taylor and
B. Alex King, III Using Computational Methods to
Reinvigorate an Undergraduate Physics
Curriculum . . . . . . . . . . . . . . . 38--43
Kelly R. Roos An Incremental Approach to Computational
Physics Education . . . . . . . . . . . 44--50
Wolfgang Christian and
Mario Belloni and
Douglas Brown An Open-Source XML Framework for
Authoring Curricular Material . . . . . 51--58
Mendel Schmiedekamp and
Aparna Subbu and
Shashi Phoha The Clustered Causal State Algorithm:
Efficient Pattern Discovery for Lossy
Data-Compression Applications . . . . . 59--67
Paul Dubois He's Baaack! . . . . . . . . . . . . . . 68--69
Sudarshan Raghunathan Making a Supercomputer Do What You Want:
High-Level Tools for Parallel
Programming . . . . . . . . . . . . . . 70--80
Shengjun Liu and
Xiaogang Jin and
Charlie C. L. Wang and
Jim X. Chen Water Wave Animation on Mesh Surfaces 81--87
Pau Amengual and
Raúl Toral Truels, or Survival of the Weakest . . . 88--95
Dianne P. O'Leary Multigrid Methods: Managing Massive
Meshes . . . . . . . . . . . . . . . . . 96--103
Charles Day My Computational Education . . . . . . . 104
Norman Chonacky Novelty, Utility, \ldots and More . . . 3
Pam Frost Gorder Neural Networks Show New Promise for
Machine Vision . . . . . . . . . . . . . 4--8
Steve McCormick and
Ulrich Rüde Guest Editors' Introduction: Multigrid
Computing . . . . . . . . . . . . . . . 10--11
Irad Yavneh Why Multigrid Methods Are So Efficient 12--22
Robert D. Falgout An Introduction to Algebraic Multigrid 24--33
Cornelis W. Oosterlee and
Francisco José Gaspar Lorenz Multigrid Methods for the Stokes System 34--43
Peter Bastian and
Christian Wieners Multigrid Methods on Adaptively Refined
Grids . . . . . . . . . . . . . . . . . 44--54
Benjamin Bergen and
Tobias Gradl and
Frank Hülsemann and
Ulrich Rüde A Massively Parallel Multigrid Method
for Finite Elements . . . . . . . . . . 56--62
Paul Dubois So Sue Me . . . . . . . . . . . . . . . 64--65
Greg Wilson Software Carpentry: Getting Scientists
to Write Better Code by Making Them More
Productive . . . . . . . . . . . . . . . 66--69
Dianne P. O'Leary Sensitivity Analysis: When a Little
Means a Lot . . . . . . . . . . . . . . 70--75
George K. Thiruvathukal and
Konstantin Läufer and
Benjamin Gonzalez Unit Testing Considered Useful . . . . . 76--87
Thomas Fent Counting (on) an Aging Population . . . 88--96
Anonymous 2006 Annual Index . . . . . . . . . . . 98--103
Francis Sullivan Is Numerical Analysis Boring? . . . . . 104
Norman Chonacky The Year that Was \ldots and Yet to Be 3--5
Pam Frost Gorder Grid Computing Yields Earthquake
Forecast . . . . . . . . . . . . . . . . 6--10
Jim X. Chen and
Tianyu Zhang Guest Editors' Introduction: Anatomic
Rendering and Visualization . . . . . . 11--12
Tong-Yee Lee and
Chung-Ren Yan and
Ming-Te Chi Stylized Rendering for Anatomic
Visualization . . . . . . . . . . . . . 13--19
Jinman Kim and
Stefan Eberl and
Dagan Feng Visualizing Dual-Modality Rendered
Volumes Using a Dual-Lookup Table
Transfer Function . . . . . . . . . . . 20--25
Tian-Yu Zhang and
Pei-Dong Dai and
Zheng-Min Wang and
Ke-Qiang Wang and
Jim X. Chen and
Le Xie A Contour Map of the Ear's Vestibular
Apparatus Based on $3$D Reconstruction 26--31
Wang Qiang and
Zhigeng Pan and
Chen Chun and
Bu Jianjun Surface Rendering for Parallel Slices of
Contours from Medical Imaging . . . . . 32--37
Richard P. Sharp and
Randall Ridgway and
Kishore Mosaliganti and
Pamela Wenzel and
Tony Pan and
Alain de Bruin and
Raghu Machiraju and
Kun Huang and
Gustavo Leone and
Joel H. Saltz Volume Rendering Phenotype Differences
in Mouse Placenta Microscopy Data . . . 38--47
David C. Banks and
Kevin Beason Fast Global Illumination for Visualizing
Isosurfaces with a $3$D Illumination
Grid . . . . . . . . . . . . . . . . . . 48--54
Dan Lubin and
Robert Massom Remote Sensing of Earth's Polar Regions:
Opportunities for Computational Science 58--71
Isabel Beichl and
Dianne P. O'Leary and
Francis Sullivan Monte Carlo Minimization and Counting:
One, Two, \ldots, Too Many . . . . . . . 72--80
Konstantin Läufer and
George K. Thiruvathukal and
Benjamín González A Hike through a Post-EJB J2EE Web
Application Architecture, Part III . . . 82--95
Paul F. Dubois Djange Me . . . . . . . . . . . . . . . 96--97
Martin Berzins and
Bradley A. Shadwick and
Denis Donnelly On the Role and Place of Computation in
Science and Engineering . . . . . . . . 98--103
Charles Day The Death of Distance Has Been
Exaggerated . . . . . . . . . . . . . . 104
Norman Chonacky The Neutrino Strikes Again . . . . . . . 2
Pam Frost Gorder Multicore Processors for Science and
Engineering . . . . . . . . . . . . . . 3--7
Daniel M. Tartakovsky and
Dongbin Xiu Guest Editors' Introduction: Stochastic
Modeling of Complex Systems . . . . . . 8--9
Leon M. Arriola and
James M. Hyman Being Sensitive to Uncertainty . . . . . 10--20
Guang Lin and
Xiaoliang Wan and
Chau-Hsing Su and
George Em Karniadakis Stochastic Computational Fluid Mechanics 21--29
Nicholas Zabaras and
Sethuraman Sankaran An Information-Theoretic Approach to
Stochastic Materials Modeling . . . . . 30--39
Timothy R. Ginn and
Frank J. Loge and
Timothy D. Scheibe Explaining `Noise' as Environmental
Variations in Population Dynamics . . . 40--49
Zuo-Jun (Max) Shen Integrated Stochastic Supply-Chain
Design Models . . . . . . . . . . . . . 50--59
Uma S. Bhatt and
Jing Zhang and
Craig S. Lingle and
Lisa M. Phillips and
Wendell V. Tangborn Examining Glacier Mass Balances with a
Hierarchical Modeling Approach . . . . . 60--67
Paul F. Dubois The Future that Never Was . . . . . . . 68--69
George K. Thiruvathukal Project Hosting: Expanding the
Scientific Programmer's Toolbox . . . . 70--75
Hiroshi Akiba and
Kwan-Liu Ma and
Jacqueline H. Chen and
Evatt R. Hawkes Visualizing Multivariate Volume Data
from Turbulent Combustion Simulations 76--83
Ehsan Nedaaee Oskoee Computing Properties of Materials Based
on the Ginzburg--Landau Equation . . . . 84--95
Dianne P. O'Leary Beetles, Cannibalism, and Chaos:
Analyzing a Dynamical System Model . . . 96--103
Charles Day Quantum Computing Is Exciting and
Important--Really! . . . . . . . . . . . 104
Norman Chonacky You're Recommending What?! . . . . . . . 2
Michael Jay Schillaci Computationally Complete . . . . . . . . 3--6
Paul F. Dubois Guest Editor's Introduction: Python:
Batteries Included . . . . . . . . . . . 7--9
Travis E. Oliphant Python for Scientific Computing . . . . 10--20
Fernando Pérez and
Brian E. Granger IPython: A System for Interactive
Scientific Computing . . . . . . . . . . 21--29
Arnd Bäcker Computational Physics Education with
Python . . . . . . . . . . . . . . . . . 30--33
Christopher R. Myers and
Ryan N. Gutenkunst and
James P. Sethna Python Unleashed on Systems Biology . . 34--37
Perry Greenfield Reaching for the Stars with Python . . . 38--40
Ryan W. Krauss and
Wayne J. Book A Python Module for Modeling and Control
Design of Flexible Robots . . . . . . . 41--45
Peter Bienstman and
Lieven Vanholme and
Wim Bogaerts and
Pieter Dumon and
Peter Vandersteegen Python in Nanophotonics Research . . . . 46--47
Kent-Andre Mardal and
Ola Skavhaug and
Glenn T. Lines and
Gunnar A. Staff and
Åsmund Òdegård Using Python to Solve Partial
Differential Equations . . . . . . . . . 48--51
K. Jarrod Millman and
Matthew Brett Analysis of Functional Magnetic
Resonance Imaging in Python . . . . . . 52--55
Xuan Shi Python for Internet GIS Applications . . 56--59
Arnd Bäcker Quantum Chaos in Billiards . . . . . . . 60--64
L. Bruno Tremblay and
Marika M. Holland and
Irina V. Gorodetskaya and
Gavin A. Schmidt An Ice-Free Arctic? Opportunities for
Computational Science . . . . . . . . . 65--74
Christopher R. Myers and
James P. Sethna Python for Education: Computational
Methods for Nonlinear Systems . . . . . 75--79
Dianne P. O'Leary A Partial Solution to Last Issue's
Homework Assignment: Beetles,
Cannibalism, and Chaos--Analyzing a
Dynamical System Model . . . . . . . . . 80--83
Julian V. Noble Making the Complex Simple . . . . . . . 84--89
John D. Hunter Matplotlib: A $2$D Graphics Environment 90--95
Francis Sullivan Wrong Again! . . . . . . . . . . . . . . 96
Norman Chonacky The Past, Present, and Future . . . . . 2--3
Anonymous Letters to the Editor . . . . . . . . . 4--6
Pam Frost Gorder Building Better Search Engines . . . . . 7--11
Howard E. Epstein and
Jed O. Kaplan and
Heike Lischke and
Qin Yu Simulating Future Changes in Arctic and
Subarctic Vegetation . . . . . . . . . . 12--23
Mario Belloni and
Wolfgang Christian and
Douglas Brown Open Source Physics Curricular Material
for Quantum Mechanics . . . . . . . . . 24--31
Zhigeng Pan and
Jianfeng Lu A Bayes-Based Region-Growing Algorithm
for Medical Image Segmentation . . . . . 32--38
Michael M. Fuller and
Dali Wang and
Louis J. Gross and
Michael W. Berry Computational Science for Natural
Resource Management . . . . . . . . . . 40--48
Trevor Cickovski and
Kedar Aras and
Maciej Swat and
Roeland M. H. Merks and
Tilmann Glimm and
H. George E. Hentschel and
Mark S. Alber and
James A. Glazier and
Stuart A. Newman and
Jesus A. Izaguirre From Genes to Organisms Via the Cell: A
Problem-Solving Environment for
Multicellular Development . . . . . . . 50--60
James L. Cornette Gauss--Vaní\vcek and Fourier Transform
Spectral Analyses of Marine Diversity 61--63
Sudarshan Raghunathan Parallel Computing Algorithms and
Applications . . . . . . . . . . . . . . 64--65
Paul F. Dubois Customer Service Says the Darnedest
Things . . . . . . . . . . . . . . . . . 66--67
Viktor K. Decyk and
Charles D. Norton and
Henry J. Gardner Why Fortran? . . . . . . . . . . . . . . 68--71
William R. Dieter and
Henry G. Dietz Designing a Cluster for Your Application 72--79
Krzysztof Kulakowski Some Recent Attempts to Simulate the
Heider Balance Problem . . . . . . . . . 80--85
Zhanping Liu and
Robert J. Moorhead, II Robust Loop Detection for Interactively
Placing Evenly Spaced Streamlines . . . 86--91
Rebecca Lippmann Kung and
Cedric Linder Improving Students' Self-Assessment of
Numerical Analysis Projects . . . . . . 92--95
Charles Day When Bits Bite . . . . . . . . . . . . . 96
Norman Chonacky Musings on a Metaphysics of Modeling . . 2--3
Maik Flanagin and
Aurélien Grenotton and
Jay Ratcliff and
Kevin B. Shaw and
John Sample and
Mahdi Abdelguerfi Hydraulic Splines: A Hybrid Approach to
Modeling River Channel Geometries . . . 4--15
Giovanni Danese and
Francesco Leporati and
Marco Bera and
Mauro Giachero and
Nelson Nazzicari and
Alvaro Spelgatti An Accelerator for Physics Simulations 16--25
William Franklin Algorithmic Design of a Fuzzy-Neural
Method . . . . . . . . . . . . . . . . . 26--31
Ian J. Grimstead and
David W. Walker and
Nick J. Avis and
Frederic Kleinermann and
John McClure $3$D Anatomical Model Visualization
within a Grid-Enabled Environment . . . 32--38
Xiaosong Yang and
Jian Chang and
Jian J. Zhang Animating the Human Muscle Structure . . 39--45
\vSimon Kos and
Marina Hru\vska and
Scott A. Crooker and
Avadh Saxena and
Darryl L. Smith Modeling Spin-Polarized Electron
Transport in Semiconductors for
Spintronics Applications . . . . . . . . 46--52
Dirk Lummerzheim Modeling and Forecasting Aurora . . . . 53--61
Dimitri Kusnezov How Big Can You Think? Challenges at the
Frontier . . . . . . . . . . . . . . . . 62--67
Paul F. Dubois Into the Future . . . . . . . . . . . . 68--69
Volodymyr V. Kindratenko and
Craig P. Steffen and
Robert J. Brunner Accelerating Scientific Applications
with Reconfigurable Computing: Getting
Started . . . . . . . . . . . . . . . . 70--77
Chenglie Hu Integrating Modern Research into
Numerical Computation Education . . . . 78--81
Claudio T. Silva and
Juliana Freire and
Steven P. Callahan Provenance for Visualizations:
Reproducibility and Beyond . . . . . . . 82--89
Kourosh Malek Transport in Protein Crystals, Part I:
Insights from Molecular Simulations . . 90--95
Francis Sullivan Is This the Party to Whom I Am Speaking? 96
Norman Chonacky The Web: For Sharing or Snaring? . . . . 3--4
Pam Frost Gorder Physics Experiment Could Spawn Permanent
Computing Grid . . . . . . . . . . . . . 5--9
Douglass E. Post Guest Editor's Introduction:
Computational Science and Engineering
for the US Department of Defense . . . . 10--11
Steven E. Gorrell and
Allan van de Wall and
Fu-Lin Tsung Understanding Unsteady Flow Features in
Transonic Compressors . . . . . . . . . 12--17
Timothy P. Fleming and
Peter J. Mardahl and
Lester Bowers and
Keith L. Cartwright and
Matthew T. Bettencourt and
Michael D. Haworth Virtual Prototyping of Novel Cathode
Designs for the Relativistic Magnetron 18--28
Wieslaw Maslowski and
Jaclyn Clement Kinney and
Jaromir Jakacki Toward Prediction of Environmental
Arctic Change . . . . . . . . . . . . . 29--34
Larry P. Davis and
Roy L. Campbell, Jr. and
William A. Ward, Jr. and
Cray J. Henry High-Performance Computing Acquisitions
Based on the Factors that Matter . . . . 35--44
David E. Newman and
Paul W. Terry and
Andrew S. Ware Shear Flows and Turbulence in Nature . . 45--52
Paul F. Dubois Career Contradictions . . . . . . . . . 53--54
Thomas Luu and
Ron Soltz and
Pavlos Vranas and
Christopher M. Frenz and
Francis Sullivan Petaflop Essay Contest . . . . . . . . . 55--59
Eric Ayars A Versatile Text for the Introductory
Computational Physics Course . . . . . . 60--61
Michael A. Gray Discrete Event Simulation: A Review of
SimEvents . . . . . . . . . . . . . . . 62--66
Michael Dennin and
Steven Barrett Turning Over a New Leaf . . . . . . . . 67--69
Kourosh Malek Transport in Protein Crystals, Part II:
Diffusion Simulation and Chiral
Recognition . . . . . . . . . . . . . . 70--75
Joel E. Tohline Scientific Visualization: A Necessary
Chore . . . . . . . . . . . . . . . . . 76--81
Konrad Hinsen Parallel Scripting with Python . . . . . 82--89
Mohankumar Nandagopal and
Natarajan Arunajadai On the Evaluation of Finite Hilbert
Transforms . . . . . . . . . . . . . . . 90--95
Charles Day The Computation of Poetry . . . . . . . 96
Norman Chonacky Where in this World Are You? . . . . . . 3--6
Robert G. Gregerson and
Tim H. Lindblom A Unique Textbook for Teaching Courses
in Bioinformatics . . . . . . . . . . . 7--8
Ani R. Thakar The Sloan Digital Sky Survey: Drinking
from the Fire Hose . . . . . . . . . . . 9--12
Eric H. Neilsen, Jr. The Sloan Digital Sky Survey Data
Archive Server . . . . . . . . . . . . . 13--17
Nolan Li and
Ani R. Thakar CasJobs and MyDB: A Batch Query
Workbench . . . . . . . . . . . . . . . 18--29
Ani R. Thakar and
Alex Szalay and
George Fekete and
Jim Gray The Catalog Archive Server Database
Management System . . . . . . . . . . . 30--37
Alex Szalay and
Ani R. Thakar and
Jim Gray The sqlLoader Data-Loading Pipeline . . 38--48
Barend J. Thijsse and
Bert W. Rust Freestyle Data Fitting and Global
Temperatures . . . . . . . . . . . . . . 49--59
Jordan Kyriakidis A Generic Approach to Electronic
Structure Calculations in Nanoscopic
Systems . . . . . . . . . . . . . . . . 60--69
Paul F. Dubois Sprinting Ain't Easy . . . . . . . . . . 70--71
Shan-Ho Tsai and
David P. Landau Spin Dynamics: An Atomistic Simulation
Tool for Magnetic Systems . . . . . . . 72--79
Michele Vallisneri and
Stanislav Babak Python and XML for Agile Scientific
Computing . . . . . . . . . . . . . . . 80--87
Steven P. Callahan and
Jason H. Callahan and
Carlos E. Scheidegger and
Claudio T. Silva Direct Volume Rendering: A $3$D Plotting
Technique for Scientific Data . . . . . 88--92
Matthias K. Gobbert and
Nagaraj K. Neerchal Preparing Graduate Students for
Interdisciplinary Careers . . . . . . . 93--95
Francis Sullivan Curb Your Enthusiasm . . . . . . . . . . 96
Norman Chonacky Turning a Page and Learning Something
Useful . . . . . . . . . . . . . . . . . 4--5
Pam Frost Gorder Computer Vision, Inspired by the Human
Brain . . . . . . . . . . . . . . . . . 6--11
Isabel Beichl and
Francis Sullivan Combinatorics in Computing . . . . . . . 12--13
Bruce Hendrickson and
Jonathan W. Berry Graph Analysis with High-Performance
Computing . . . . . . . . . . . . . . . 14--19
John R. Gilbert and
Steve Reinhardt and
Viral B. Shah A Unified Framework for Numerical and
Combinatorial Computing . . . . . . . . 20--25
Ivona Bezáková Sampling Binary Contingency Tables . . . 26--31
Heiko Bauke Passing Messages to Lonely Numbers . . . 32--40
Yanling Liu and
Jim X. Chen and
Lin Yang Real-Time Photorealistic Virtual Human
Anatomy . . . . . . . . . . . . . . . . 41--47
Lei Shi and
Xin Yang and
Hailang Pan $3$D Face Visualization Using Grid Light 48--54
Gaël Varoquaux Agile Computer Control of a Complex
Experiment . . . . . . . . . . . . . . . 55--59
Bill Feiereisen and
George K. Thiruvathukal At Issue . . . . . . . . . . . . . . . . 60--64
Joe Kaylor and
George K. Thiruvathukal A Virtual Computing Laboratory . . . . . 65--69
Debashish Chowdhury Molecular Motors: Design, Mechanism, and
Control . . . . . . . . . . . . . . . . 70--77
Kyungmin Ham and
Heath A. Barnett and
Leslie G. Butler Burning Issues in Tomography Analysis 78--81
Michael A. Gray Multiphysics Technologies . . . . . . . 82--84
R. Torsten Clay and
Richard Gass Books . . . . . . . . . . . . . . . . . 85--87
Charles Day The Irony of Craigslist . . . . . . . . 88
Norman Chonacky Back to the Future? . . . . . . . . . . 3--4
Greg Wilson Those Who Will Not Learn From History
\ldots . . . . . . . . . . . . . . . . . 5--6
Paul F. Dubois Brain Cancer May Be the Least of Our
Worries . . . . . . . . . . . . . . . . 7--8
Cláudio T. Silva and
Joel E. Tohline Computational Provenance . . . . . . . . 9--10
Juliana Freire and
David Koop and
Emanuele Santos and
Cláudio T. Silva Provenance for Computational Tasks: A
Survey . . . . . . . . . . . . . . . . . 11--21
Andrew Dolgert and
Lawrence Gibbons and
Christopher D. Jones and
Valentin Kuznetsov and
Mirek Riedewald and
Daniel Riley and
Gregory J. Sharp and
Peter Wittich Provenance in High-Energy Physics
Workflows . . . . . . . . . . . . . . . 22--29
Erik W. Anderson and
James P. Ahrens and
Katrin Heitmann and
Salman Habib and
Cláudio T. Silva Provenance in Comparative Analysis: A
Study in Cosmology . . . . . . . . . . . 30--37
Simon Miles and
Paul Groth and
Ewa Deelman and
Karan Vahi and
Gaurang Mehta and
Luc Moreau Provenance: The Bridge Between
Experiments and Data . . . . . . . . . . 38--46
Jose Manuel Gómez-Pérez and
Oscar Corcho Problem-Solving Methods for
Understanding Process Executions . . . . 47--52
António Baptista and
Bill Howe and
Juliana Freire and
David Maier and
Cláudio T. Silva Scientific Exploration in the Era of
Ocean Observatories . . . . . . . . . . 53--58
Cosmin Pancratov and
Jacob M. Kurzer and
Kelly A. Shaw and
Matthew L. Trawick Why Computer Architecture Matters . . . 59--63
Javier E. Hasbun How Do Nerve Cells Compute? . . . . . . 64--65
Muhammad Sahimi and
S. Mehdi Vaez Allaei Numerical Simulation of Wave
Propagation, Part I: Sequential
Computing . . . . . . . . . . . . . . . 66--75
Konstantin Läufer A Stroll through Domain-Driven
Development with Naked Objects . . . . . 76--83
Jakub Kurzak and
Alfredo Buttari and
Piotr Luszczek and
Jack Dongarra The PlayStation 3 for High-Performance
Scientific Computing . . . . . . . . . . 84--87
Francis Sullivan I Wandered Lonely as a Cloud . . . . . . 88
Norman Chonacky Ten Years and Counting\ldots . . . . . . 3
Pam Frost Gorder Medical Software has Astronomers Seeing
Stars . . . . . . . . . . . . . . . . . 4--9
Maria Fyta and
Simone Melchionna and
Efthimios Kaxiras and
Sauro Succi Multiscale Simulation of Nanobiological
Flows . . . . . . . . . . . . . . . . . 10--19
Chad Jones and
Kwan-Liu Ma and
Stéphane Ethier and
Wei-Li Lee An Integrated Exploration Approach to
Visualizing Multivariate Particle Data 20--29
Chuan Zhou and
Xiaogang Jin and
Charlie C. L. Wang Efficient and Stable Simulation of Cloth
Undergoing Large Rotations . . . . . . . 30--40
Raquel S. Macedo and
Marcelo F. Alfradique and
Marcelo Castier Automatic Generation of Matlab Functions
Using Mathematica and Thermath . . . . . 41--49
Natividad Duro and
Raquel Dormido and
Héctor Vargas and
Sebastián Dormido-Canto and
José Sánchez and
Gonzalo Farias and
Francisco Esquembre and
Sebastián Dormido An Integrated Virtual and Remote Control
Lab: The Three-Tank System as a Case
Study . . . . . . . . . . . . . . . . . 50--59
Mohamed Sayeed and
Hansang Bae and
Yili Zheng and
Brian Armstrong and
Rudolf Eigenmann and
Faisal Saied Measuring High-Performance Computing
with Real Applications . . . . . . . . . 60--70
Cosmin Pancratov and
Jacob M. Kurzer and
Kelly A. Shaw and
Matthew L. Trawick Why Computer Architecture Matters:
Memory Access . . . . . . . . . . . . . 71--75
Muhammad Sahimi and
S. Mehdi Vaez Allaei Numerical Simulation of Wave
Propagation, Part II: Parallel Computing 76--83
Joel E. Tohline Where Is My Digital Holographic Display? 84--85
Alexander Pletzer and
Douglas McCune and
Stefan Muszala and
Srinath Vadlamani and
Scott Kruger Exposing Fortran Derived Types to C and
Other Languages . . . . . . . . . . . . 86--92
Paul F. Dubois Goodbye to All That . . . . . . . . . . 93--95
Charles Day From First Principles---Gauging the
Web's Impact on Scientific Journals . . 96