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%%% ====================================================================
%%%  BibTeX-file{
%%%     author          = "Nelson H. F. Beebe",
%%%     version         = "1.00",
%%%     date            = "01 June 2019",
%%%     time            = "08:22:00 MDT",
%%%     filename        = "jcomputbiol.bib",
%%%     address         = "University of Utah
%%%                        Department of Mathematics, 110 LCB
%%%                        155 S 1400 E RM 233
%%%                        Salt Lake City, UT 84112-0090
%%%                        USA",
%%%     telephone       = "+1 801 581 5254",
%%%     FAX             = "+1 801 581 4148",
%%%     URL             = "http://www.math.utah.edu/~beebe",
%%%     checksum        = "10535 47732 176737 1962588",
%%%     email           = "beebe at math.utah.edu, beebe at acm.org,
%%%                        beebe at computer.org (Internet)",
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%%%     keywords        = "bibliography; BibTeX; Journal of
%%%                        Computational Biology",
%%%     license         = "public domain",
%%%     supported       = "yes",
%%%     docstring       = "This is a COMPLETE bibliography of the
%%%                        Journal of Computational Biology (CODEN
%%%                        JCOBEM, ISSN 1066-5277 (print), 1557-8666
%%%                        (electronic)) which began with volume 1,
%%%                        number 1, in January 1994.  Volumes are
%%%                        published annually, with 4 to 12 issues, and
%%%                        issues are sometimes combined.  The journal
%%%                        is published by Mary Ann Liebert, Inc.
%%%                        Publishers, New Rochelle, NY, USA.
%%%
%%%                        The publisher has World Wide Web sites for
%%%                        the journal at
%%%
%%%                            http://home.liebertpub.com/cmb
%%%                            https://www.liebertpub.com/loi/cmb/
%%%
%%%                        At version 1.00, the COMPLETE year coverage
%%%                        looked like this:
%%%
%%%                             1994 (  30)    2003 (  62)    2012 (  97)
%%%                             1995 (  40)    2004 (  70)    2013 (  79)
%%%                             1996 (  32)    2005 (  83)    2014 (  72)
%%%                             1997 (  38)    2006 ( 113)    2015 (  90)
%%%                             1998 (  51)    2007 (  87)    2016 (  86)
%%%                             1999 (  31)    2008 (  88)    2017 ( 110)
%%%                             2000 (  52)    2009 ( 118)    2018 ( 118)
%%%                             2001 (  39)    2010 ( 114)    2019 (  53)
%%%                             2002 (  54)    2011 ( 136)
%%%
%%%                             Article:       1943
%%%
%%%                             Total entries: 1943
%%%
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%%%
%%%                        BibTeX citation tags are uniformly chosen
%%%                        as name:year:abbrev, where name is the
%%%                        family name of the first author or editor,
%%%                        year is a 4-digit number, and abbrev is a
%%%                        3-letter condensation of important title
%%%                        words. Citation tags were automatically
%%%                        generated by software developed for the
%%%                        BibNet Project.
%%%
%%%                        In this bibliography, entries are sorted in
%%%                        publication order within each journal,
%%%                        using bibsort -byvolume.
%%%
%%%                        The checksum field above contains a CRC-16
%%%                        checksum as the first value, followed by the
%%%                        equivalent of the standard UNIX wc (word
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%%% ====================================================================
%%% Acknowledgement abbreviations:
@String{ack-nhfb = "Nelson H. F. Beebe,
                    University of Utah,
                    Department of Mathematics, 110 LCB,
                    155 S 1400 E RM 233,
                    Salt Lake City, UT 84112-0090, USA,
                    Tel: +1 801 581 5254,
                    FAX: +1 801 581 4148,
                    e-mail: \path|beebe@math.utah.edu|,
                            \path|beebe@acm.org|,
                            \path|beebe@computer.org| (Internet),
                    URL: \path|http://www.math.utah.edu/~beebe/|"}

%%% ====================================================================
%%% Journal abbreviations:
@String{j-J-COMPUT-BIOL         = "Journal of Computational Biology"}

%%% ====================================================================
%%% Bibliography entries, sorted in publication order, with
%%% `bibsort -byvolume':
@Article{Anonymous:1994:EWC,
  author =       "Anonymous",
  title =        "Editorial: Whither Computational Biology",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "1",
  pages =        "1--2",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.1",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:45:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.1",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Overton:1994:QSQ,
  author =       "G. Christian Overton and Jeffrey S. Aaronson and
                 Juergen Haas and Julie Adams",
  title =        "{QGB}: a System for Querying Sequence Database Fields
                 and Features",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "1",
  pages =        "3--14",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.3",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:45:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.3;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.3",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Forsten:1994:PAL,
  author =       "Kimberly E. Forsten and Douglas A. Lauffenburger",
  title =        "Probability of Autocrine Ligand Capture by
                 Cell-Surface Receptors: Implications for Ligand
                 Secretion Measurements",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "1",
  pages =        "15--23",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.15",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:45:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.15;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.15",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Leng:1994:PSS,
  author =       "Bing Leng and Bruce G. Buchanan and Hugh B. Nicholas",
  title =        "Protein Secondary Structure Prediction Using Two-Level
                 Case-Based Reasoning",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "1",
  pages =        "25--38",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.25",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:45:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.25;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.25",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{States:1994:QCU,
  author =       "David J. States and Warren Gish",
  title =        "{QGB}: Combined Use of Sequence Similarity and Codon
                 Bias for Coding Region Identification",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "1",
  pages =        "39--50",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.39",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:45:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.39;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.39",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Miller:1994:CAS,
  author =       "Webb Miller and Mark Boguski and Balaji Raghavachari
                 and Zheng Zhang and Ross C. Hardison",
  title =        "Constructing Aligned Sequence Blocks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "1",
  pages =        "51--64",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.51",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:45:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.51;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.51",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Keele:1994:CDM,
  author =       "J. W. Keele and J. E. Wray and D. W. Behrens and G. A.
                 Rohrer and S. L. F. Sunden and S. M. Kappes and M. D.
                 Bishop and R. T. Stone and L. J. Alexander and C. W.
                 Beattie",
  title =        "A Conceptual Database Model for Genomic Research",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "1",
  pages =        "65--76",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.65",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:45:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.65;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.65",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Ferretti:1994:SBC,
  author =       "V. Ferretti and B. F. Lang and D. Sankoff",
  title =        "Skewed Base Compositions, Asymmetric Transition
                 Matrices, and Phylogenetic Invariants",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "1",
  pages =        "77--92",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.77",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:45:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.77;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.77",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Goldstein:1994:APS,
  author =       "Larry Goldstein and Michael S. Waterman",
  title =        "Approximations to Profile Score Distributions",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "2",
  pages =        "93--104",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.93",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:00 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.93;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.93",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Dyer:1994:PUS,
  author =       "Martin Dyer and Alan Frieze and Stephen Suen",
  title =        "The Probability of Unique Solutions of Sequencing by
                 Hybridization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "2",
  pages =        "105--110",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.105",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:00 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  note =         "See corrigendum \cite{Dyer:1996:CPU}.",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.105;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.105",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Rohrer:1994:SPE,
  author =       "G. A. Rohrer and D. W. Behrens and J. W. Keele",
  title =        "A Simplified Procedure for Entry of Raw Genotypic
                 Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "2",
  pages =        "111--119",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.111",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:00 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.111;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.111",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Rustici:1994:TDS,
  author =       "Mauro Rustici and Arthur M. Lesk",
  title =        "Three-Dimensional Searching for Recurrent Structural
                 Motifs in Data Bases of Protein Structures",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "2",
  pages =        "121--132",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.121",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:00 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.121;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.121",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Charleston:1994:ESL,
  author =       "Michael A. Charleston and Michael D. Hendy and David
                 Penny",
  title =        "The Effects of Sequence Length, Tree Topology, and
                 Number of Taxa on the Performance of Phylogenetic
                 Methods",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "2",
  pages =        "133--151",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.133",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:00 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.133;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.133",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Steel:1994:RTW,
  author =       "M. A. Steel and L. A. Sz{\'e}kely and M. D. Hendy",
  title =        "Reconstructing Trees When Sequence Sites Evolve at
                 Variable Rates",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "2",
  pages =        "153--163",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.153",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:00 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.153;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.153",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Fasman:1994:RGD,
  author =       "Kenneth H. Fasman",
  title =        "Restructuring the Genome Data Base: a Model for a
                 Federation of Biological Databases",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "2",
  pages =        "165--171",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.165",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:00 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.165;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.165",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Robbins:1994:GIC,
  author =       "Robert J. Robbins",
  title =        "Genome Informatics I: Community Databases",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "3",
  pages =        "173--190",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.173",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:02 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.173;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.173",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Knuppel:1994:TRP,
  author =       "R. Kn{\"u}ppel and P. Dietze and W. Lehnberg and K.
                 Frech and E. Wingender",
  title =        "{TRANSFAC} Retrieval Program: a Network Model Database
                 of Eukaryotic Transcription Regulating Sequences and
                 Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "3",
  pages =        "191--198",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.191",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:02 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.191;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.191",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Hide:1994:BED,
  author =       "Winston Hide and John Burke and Daniel B. {Da Vison}",
  title =        "Biological Evaluation of d$^2$, an Algorithm for
                 High-Performance Sequence Comparison",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "3",
  pages =        "199--215",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.199",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:02 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.199;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.199",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Zhang:1994:CMA,
  author =       "Zheng Zhang and Balaji Raghavachari and Ross C.
                 Hardison and Webb Miller",
  title =        "Chaining Multiple-Alignment Blocks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "3",
  pages =        "217--226",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.217",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:02 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.217;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.217",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Wang:1994:SPR,
  author =       "Chi Wang",
  title =        "A Subgraph Problem from Restriction Maps of {DNA}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "3",
  pages =        "227--234",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.227",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:02 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.227;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.227",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Zhang:1994:EEP,
  author =       "Zheng Zhang",
  title =        "An Exponential Example for a Partial Digest Mapping
                 Algorithm",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "3",
  pages =        "235--239",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.235",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:02 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.235;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.235",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Martin:1994:ECD,
  author =       "Daniela R. Martin",
  title =        "Equivalence Classes for the Double-Digest Problem with
                 Coincident Cut Sites",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "3",
  pages =        "241--253",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.241",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:02 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.241;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.241",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Gustfield:1994:MEL,
  author =       "Dan Gustfield and David Shmoys and Jan Karel Lenstra
                 and Tandy Warnow",
  title =        "In Memoriam {Eugene L. Lawler}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "4",
  pages =        "255--256",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.255",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:04 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.255",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Miller:1994:QCD,
  author =       "Mark J. Miller and John I. Powell",
  title =        "A Quantitative Comparison of {DNA} Sequence Assembly
                 Programs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "4",
  pages =        "257--269",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.257",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:04 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.257;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.257",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Chao:1994:RDL,
  author =       "Kun-Mao Chao and Ross C. Hardison and Webb Miller",
  title =        "Recent Developments in Linear-Space Alignment Methods:
                 a Survey",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "4",
  pages =        "271--291",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.271",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:04 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.271;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.271",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Rioux:1994:PSE,
  author =       "Pierre A. Rioux and William A. Gilbert and Timothy G.
                 Littlejohn",
  title =        "A Portable Search Engine and Browser for the Entrez
                 Database",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "4",
  pages =        "293--295",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.293",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:04 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.293;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.293",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Taylor:1994:MBP,
  author =       "William R. Taylor",
  title =        "Motif-Biased Protein Sequence Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "4",
  pages =        "297--310",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.297",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:04 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.297;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.297",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Baldi:1994:HMM,
  author =       "Pierre Baldi and Yves Chauvin",
  title =        "Hidden {Markov} Models of the {G}-Protein-Coupled
                 Receptor Family",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "4",
  pages =        "311--336",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.311",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:04 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.311;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.311",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Wang:1994:CMS,
  author =       "Lusheng Wang and Tao Jiang",
  title =        "On the Complexity of Multiple Sequence Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "4",
  pages =        "337--348",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.337",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:04 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.337;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.337",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Naor:1994:NOA,
  author =       "Dalit Naor and Douglas L. Brutlag",
  title =        "On Near-Optimal Alignments of Biological Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "1",
  number =       "4",
  pages =        "349--366",
  month =        jan,
  year =         "1994",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1994.1.349",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:04 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1994.1.349;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1994.1.349",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 June 2009",
}

@Article{Beaver:1995:CD,
  author =       "Donald Beaver",
  title =        "Computing with {DNA}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "1--7",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.1",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.1;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.1",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Eddy:1995:MDH,
  author =       "Sean R. Eddy and Graeme Mitchison and Richard Durbin",
  title =        "Maximum Discrimination Hidden {Markov} Models of
                 Sequence Consensus",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "9--23",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.9",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.9;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.9",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Sewell:1995:MCP,
  author =       "Roger F. Sewell and Richard Durbin",
  title =        "Method for Calculation of Probability of Matching a
                 Bounded Regular Expression in a Random Data String",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "25--31",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.25",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.25;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.25",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Jain:1995:NSC,
  author =       "Mudita Jain and Eugene W. Myers",
  title =        "A Note on Scoring Clones Given a Probe Ordering",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "33--37",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.33",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.33;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.33",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Steel:1995:CCL,
  author =       "M. A. Steel and Y. X. Fu",
  title =        "Classifying and Counting Linear Phylogenetic
                 Invariants for the Jukes--{Cantor} Model",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "39--47",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.39",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.39;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.39",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Weiss:1995:MPC,
  author =       "Gunter Weiss and Arndt {Von Haeseler}",
  title =        "Modeling the Polymerase Chain Reaction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "49--61",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.49",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.49;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.49",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Sun:1995:PCR,
  author =       "Fengzhu Sun",
  title =        "The Polymerase Chain Reaction and Branching
                 Processes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "63--86",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.63",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.63;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.63",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Gelfand:1995:PFD,
  author =       "M. S. Gelfand",
  title =        "Prediction of Function in {DNA} Sequence Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "87--115",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.87",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.87;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.87",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Fickett:1995:OGH,
  author =       "James W. Fickett",
  title =        "{ORFs} and Genes: How Strong a Connection?",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "117--123",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.117",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.117;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.117",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Berger:1995:APS,
  author =       "Bonnie Berger",
  title =        "Algorithms for Protein Structural Motif Recognition",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "125--138",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.125",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.125;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.125",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Goldberg:1995:FSA,
  author =       "Paul W. Goldberg and Martin C. Golumbic and Haim
                 Kaplan and Ron Shamir",
  title =        "Four Strikes Against Physical Mapping of {DNA}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "1",
  pages =        "139--152",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.139",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:06 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.139;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.139",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Pevzner:1995:CMD,
  author =       "Pavel A. Pevzner",
  title =        "Combinatorial Methods for {DNA} Mapping and
                 Sequencing",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "153--158",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.153",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.153;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.153",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Alizadeh:1995:PMC,
  author =       "Farid Alizadeh and Richard M. Karp and Deborah K.
                 Weisser and Geoffrey Zweig",
  title =        "Physical Mapping of Chromosomes Using Unique Probes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "159--184",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.159",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.159;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.159",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Gillett:1995:FCS,
  author =       "Will Gillett and Jim Daues and Liz Hanks and Rob
                 Capra",
  title =        "Fragment Collapsing and Splitting While Assembling
                 High-Resolution Restriction Maps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "185--205",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.185",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.185;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.185",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Dyer:1995:OCL,
  author =       "Martin Dyer and Alan Frieze and Stephen Suen",
  title =        "Ordering Clone Libraries in Computational Biology",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "207--218",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.207",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.207;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.207",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Greenberg:1995:PMS,
  author =       "David S. Greenberg and Sorin Istrail",
  title =        "Physical Mapping by {STS} Hybridization: Algorithmic
                 Strategies and the Challenge of Software Evaluation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "219--273",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.219",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.219;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.219",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Myers:1995:TSA,
  author =       "Eugene W. Myers",
  title =        "Toward Simplifying and Accurately Formulating Fragment
                 Assembly",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "275--290",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.275",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.275;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.275",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Idury:1995:NAD,
  author =       "Ramana M. Idury and Michael S. Waterman",
  title =        "A New Algorithm for {DNA} Sequence Assembly",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "291--306",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.291",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.291;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.291",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Armen:1995:SSS,
  author =       "Chris Armen and Clifford Stein",
  title =        "Short Superstrings and the Structure of Overlapping
                 Strings",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "307--332",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.307",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.307;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.307",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Skiena:1995:RSS,
  author =       "Steven S. Skiena and Gopalakrishnan Sundaram",
  title =        "Reconstructing Strings from Substrings",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "333--353",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.333",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.333;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.333",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Milosavljevic:1995:DSR,
  author =       "Aleksandar Milosavljevi{\'c}",
  title =        "{DNA} Sequence Recognition by Hybridization to Short
                 Oligomers",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "355--370",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.355",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.355;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.355",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Rubinov:1995:RSS,
  author =       "A. R. Rubinov and M. S. Gelfand",
  title =        "Reconstruction of a String from Substring Precedence
                 Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "371--381",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.371",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.371;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.371",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Razgulyaev:1995:SPN,
  author =       "Oleg Razgulyaev and Anatoly Rubinov and Mikhail
                 Gelfand and Alexander Chetverin",
  title =        "Sequencing Potential of Nested {Strand}
                 Hybridization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "2",
  pages =        "383--395",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.383",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.383;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.383",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Agarwala:1995:FAI,
  author =       "Richa Agarwala and David Fern{\'a}ndez-Baca and Giora
                 Slutzki",
  title =        "Fast Algorithms for Inferring Evolutionary Trees",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "3",
  pages =        "397--407",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.397",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.397;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.397",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Sun:1995:ATG,
  author =       "Jian Sun and Wen-Yuan Song and Li-Huang Zhu and
                 Run-Sheng Chen",
  title =        "Analysis of {tRNA} Gene Sequences by Neural Network",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "3",
  pages =        "409--416",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.409",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.409;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.409",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Schbath:1995:EMD,
  author =       "Sophie Schbath and Bernard Prum and Elisabeth {De
                 Turckheim}",
  title =        "Exceptional Motifs in Different {Markov} Chain Models
                 for a Statistical Analysis of {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "3",
  pages =        "417--437",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.417",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.417;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.417",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Charleston:1995:TCL,
  author =       "M. A. Charleston",
  title =        "Toward a Characterization of Landscapes of
                 Combinatorial Optimization Problems, with Special
                 Attention to the Phylogeny Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "3",
  pages =        "439--450",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.439",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.439;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.439",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Worley:1995:INM,
  author =       "K. C. Worley and K. Y. King and S. Chua and E. R. B.
                 Mccabe and R. F. Smith",
  title =        "Identification of New Members of a Carbohydrate
                 Kinase-Encoding Gene Family",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "3",
  pages =        "451--458",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.451",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.451;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.451",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Gupta:1995:IPS,
  author =       "Sandeep K. Gupta and John D. Kececioglu and Alejandro
                 A. Sch{\"a}ffer",
  title =        "Improving the Practical Space and Time Efficiency of
                 the Shortest-Paths Approach to Sum-of-Pairs Multiple
                 Sequence Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "3",
  pages =        "459--472",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.459",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.459;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.459",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Salzberg:1995:LPC,
  author =       "Steven Salzberg",
  title =        "Locating Protein Coding Regions in Human {DNA} Using a
                 Decision Tree Algorithm",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "3",
  pages =        "473--485",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.473",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.473;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.473",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Baldi:1995:SMH,
  author =       "Pierre Baldi",
  title =        "Substitution Matrices and Hidden {Markov} Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "3",
  pages =        "487--491",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.487",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.487;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.487",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Mirkin:1995:BCM,
  author =       "Boris Mirkin and Ilya Muchnik and Temple F. Smith",
  title =        "A Biologically Consistent Model for Comparing
                 Molecular Phylogenies",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "4",
  pages =        "493--507",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.493",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.493;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.493",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Wareham:1995:SPN,
  author =       "H. Todd Wareham",
  title =        "A Simplified Proof of the {NP}- and {MAX SNP}-Hardness
                 of Multiple Sequence Tree Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "4",
  pages =        "509--514",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.509",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.509;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.509",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Benham:1995:HTW,
  author =       "Craig Benham and Sampath Kannan and Michael Paterson
                 and Tandy Warnow",
  title =        "{Hen}'s Teeth and {Whale}'s Feet: Generalized
                 Characters and Their Compatibility",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "4",
  pages =        "515--525",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.515",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.515;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.515",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Reva:1995:CLM,
  author =       "Boris A. Reva and Dmitrii S. Rykunov and Arthur J.
                 Olson and Alexei V. Finkelstein",
  title =        "Constructing Lattice Models of Protein Chains with
                 Side Groups",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "4",
  pages =        "527--535",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.527",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.527;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.527",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Markowitz:1995:HMB,
  author =       "Victor M. Markowitz",
  title =        "Heterogeneous Molecular Biology Databases",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "4",
  pages =        "537--538",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.537",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.537",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Letovsky:1995:BIM,
  author =       "Stanley Letovsky",
  title =        "Beyond the Information Maze",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "4",
  pages =        "539--546",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.539",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.539;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.539",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Markowitz:1995:CHM,
  author =       "Victor M. Markowitz and Otto Ritter",
  title =        "Characterizing Heterogeneous Molecular Biology
                 Database Systems",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "4",
  pages =        "547--556",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.547",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.547;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.547",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Davidson:1995:CIB,
  author =       "S. B. Davidson and C. Overton and P. Buneman",
  title =        "Challenges in Integrating Biological Data Sources",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "4",
  pages =        "557--572",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.557",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.557;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.557",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Karp:1995:SDI,
  author =       "Peter D. Karp",
  title =        "A Strategy for Database Interoperation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "2",
  number =       "4",
  pages =        "573--586",
  month =        jan,
  year =         "1995",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1995.2.573",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1995.2.573;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1995.2.573",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Agarwal:1996:BED,
  author =       "Pankaj Agarwal and David J. States",
  title =        "A {Bayesian} Evolutionary Distance for Parametrically
                 Aligned Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "1",
  pages =        "1--17",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.1",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.1;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.1",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Hendy:1996:CFL,
  author =       "Michael D. Hendy and David Penny",
  title =        "Complete Families of Linear Invariants for Some
                 Stochastic Models of Sequence Evolution, with and
                 without the Molecular Clock Assumption",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "1",
  pages =        "19--31",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.19",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.19;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.19",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Myers:1996:AMN,
  author =       "Eugene W. Myers",
  title =        "Approximate Matching of Network Expressions with
                 Spacers",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "1",
  pages =        "33--51",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.33",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.33;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.33",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Hart:1996:FPF,
  author =       "William E. Hart and Sorin C. Istrail",
  title =        "Fast Protein Folding in the Hydrophobic--Hydrophilic
                 Model within Three-Eighths of Optimal",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "1",
  pages =        "53--96",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.53",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.53;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.53",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Takahashi:1996:MSN,
  author =       "Yoshikane Takahashi",
  title =        "A Mathematical Solution to a Network Designing
                 Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "1",
  pages =        "97--141",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.97",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.97;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.97",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Joshi:1996:PLI,
  author =       "Rajani R. Joshi and K. Krishnanand",
  title =        "Probabilistic Learning in Immune Network: Weighted
                 Tree Matching Model",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "1",
  pages =        "143--162",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.143",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.143;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.143",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Riis:1996:IPP,
  author =       "S{\o}ren Kamaric Riis and Anders Krogh",
  title =        "Improving Prediction of Protein Secondary Structure
                 Using Structured Neural Networks and Multiple Sequence
                 Alignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "1",
  pages =        "163--183",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.163",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.163;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.163",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Tsang:1996:SFP,
  author =       "Simon Tsang and Milton H. {Saier, Jr.}",
  title =        "A Simple Flexible Program for the Computational
                 Analysis of Amino Acyl Residue Distribution in
                 Proteins: Application to the Distribution of Aromatic
                 versus Aliphatic Hydrophobic Amino Acids in
                 Transmembrane $ \alpha $-Helical Spanners of Integral
                 Membrane Transport Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "1",
  pages =        "185--190",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.185",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.185;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.185",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Karp:1996:IAM,
  author =       "Peter D. Karp and Suzanne Paley",
  title =        "Integrated Access to Metabolic and Genomic Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "1",
  pages =        "191--212",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.191",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.191;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.191",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Singh:1996:DTP,
  author =       "Raj K. Singh and Alexander Tropsha and Iosif I.
                 Vaisman",
  title =        "{Delaunay} Tessellation of Proteins: Four Body
                 Nearest-Neighbor Propensities of Amino Acid Residues",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "2",
  pages =        "213--221",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.213",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.213;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.213",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Gelfand:1996:RGH,
  author =       "M. S. Gelfand and L. I. Podolsky and T. V. Astakhova
                 and M. A. Roytberg",
  title =        "Recognition of Genes in Human {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "2",
  pages =        "223--234",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.223",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.223;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.223",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Schierwater:1996:ENP,
  author =       "Bernd Schierwater and Dirk Metzler and Katja
                 Kr{\"u}ger and Bruno Streit",
  title =        "The Effects of Nested Primer Binding Sites on the
                 Reproducibility of {PCR}: Mathematical Modeling and
                 Computer Simulation Studies",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "2",
  pages =        "235--251",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.235",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.235;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.235",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Huynen:1996:BPP,
  author =       "Martijn A. Huynen and Alan Perelson and Wayne A.
                 Vieira and Peter F. Stadler",
  title =        "Base Pairing Probabilities in a Complete {HIV-1}
                 {RNA}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "2",
  pages =        "253--274",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.253",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.253;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.253",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Bryant:1996:HTB,
  author =       "David Bryant",
  title =        "Hunting for Trees in Binary Character Sets: Efficient
                 Algorithms for Extraction, Enumeration, and
                 Optimization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "2",
  pages =        "275--288",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.275",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.275;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.275",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Koch:1996:AFM,
  author =       "Ina Koch and Thomas Lengauer and Egon Wanke",
  title =        "An Algorithm for Finding Maximal Common Subtopologies
                 in a Set of Protein Structures",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "2",
  pages =        "289--306",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.289",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.289;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.289",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Kelly:1996:BAA,
  author =       "Colleen Kelly and Gary A. Churchill",
  title =        "Biases in Amino Acid Replacement Matrices and
                 Alignment Scores Due to Rate Heterogeneity",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "2",
  pages =        "307--318",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.307",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.307;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.307",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Nadkarni:1996:DWD,
  author =       "Prakash Nadkarni and Kei-Hoi Cheung and Carmela
                 Castiglione and Perry Miller and Kenneth Kidd",
  title =        "{DNA} Workbench: a Database Package to Manage Regional
                 Physical Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "2",
  pages =        "319--329",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.319",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.319;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.319",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Dyer:1996:CPU,
  author =       "Martin Dyer and Alan Frieze and Stephen Suen",
  title =        "Corrigendum to {{\booktitle{Probability of Unique
                 Solutions of Sequencing by Hybridization}}}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "2",
  pages =        "331--331",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.331",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  note =         "See \cite{Dyer:1994:PUS}.",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.331",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Xu:1996:IAC,
  author =       "Ying Xu and Richard J. Mural and Edward C.
                 Uberbacher",
  title =        "An Iterative Algorithm for Correcting Sequencing
                 Errors in {DNA} Coding Regions",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "3",
  pages =        "333--344",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.333",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:19 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.333;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.333",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Leung:1996:USD,
  author =       "Ming-Ying Leung and Genevieve M. Marsh and Terence P.
                 Speed",
  title =        "Over- and Underrepresentation of Short {DNA} Words in
                 Herpesvirus Genomes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "3",
  pages =        "345--360",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.345",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:19 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.345;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.345",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Mamitsuka:1996:LMH,
  author =       "Hiroshi Mamitsuka",
  title =        "A Learning Method of Hidden {Markov} Models for
                 Sequence Discrimination",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "3",
  pages =        "361--373",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.361",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:19 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.361;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.361",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Wu:1996:SBD,
  author =       "Thomas D. Wu",
  title =        "A Segment-Based Dynamic Programming Algorithm for
                 Predicting Gene Structure",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "3",
  pages =        "375--394",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.375",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:19 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.375;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.375",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Knill:1996:IPE,
  author =       "E. Knill and A. Schliep and D. C. Torney",
  title =        "Interpretation of Pooling Experiments Using the
                 {Markov} Chain {Monte Carlo} Method",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "3",
  pages =        "395--406",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.395",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:19 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.395;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.395",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Salamon:1996:DUC,
  author =       "Hugh Salamon and Jorma Tarhio and Kjersti R{\o}nningen
                 and Glenys Thomson",
  title =        "On Distinguishing Unique Combinations in Biological
                 Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "3",
  pages =        "407--423",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.407",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:19 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.407;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.407",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Arratia:1996:PPA,
  author =       "Richard Arratia and Daniela Martin and Gesine Reinert
                 and Michael S. Waterman",
  title =        "{Poisson} Process Approximation for Sequence Repeats,
                 and Sequencing by Hybridization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "3",
  pages =        "425--463",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.425",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:19 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.425;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.425",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Robbins:1996:BEI,
  author =       "Robert J. Robbins",
  title =        "Bioinformatics: Essential Infrastructure for Global
                 Biology$^1$",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "3",
  pages =        "465--478",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.465",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:19 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.465;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.465",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Griffiths:1996:AIS,
  author =       "R. C. Griffiths and P. Marjoram",
  title =        "Ancestral Inference from Samples of {DNA} Sequences
                 with Recombination",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "4",
  pages =        "479--502",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.479",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:21 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.479;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.479",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Bhandarkar:1996:PCP,
  author =       "Suchendra M. Bhandarkar and Sridhar Chirravuri and
                 Jonathan Arnold",
  title =        "Parallel Computing of Physical Maps --- a Comparative
                 Study in {SIMD} and {MIMD} Parallelism",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "4",
  pages =        "503--528",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.503",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:21 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.503;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.503",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Joshi:1996:SOC,
  author =       "Rajani R. Joshi",
  title =        "A Self-Organizing Cognitive Network of Antibody
                 Repertoire Development",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "4",
  pages =        "529--545",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.529",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:21 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.529;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.529",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Wu:1996:PCD,
  author =       "Cathy H. Wu and Sheng Zhao and Hsi-Lien Chen",
  title =        "A Protein Class Database Organized with {ProSite}
                 Protein Groups and {PIR} Superfamilies",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "4",
  pages =        "547--561",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.547",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:21 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.547;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.547",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Myers:1996:PMA,
  author =       "Gene Myers and Sanford Selznick and Zheng Zhang and
                 Webb Miller",
  title =        "Progressive Multiple Alignment with Constraints",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "4",
  pages =        "563--572",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.563",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:21 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.563;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.563",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Teitelman:1996:PCA,
  author =       "Michael Teitelman and Frank H. Eeckman",
  title =        "Principal Component Analysis and Large-Scale
                 Correlations in Non-Coding Sequences of Human {DNA}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "3",
  number =       "4",
  pages =        "573--576",
  month =        jan,
  year =         "1996",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1996.3.573",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:21 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1996.3.573;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1996.3.573",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Hart:1997:RPN,
  author =       "William E. Hart and Sorin Istrail",
  title =        "Robust Proofs of {NP-Hardness} for Protein Folding:
                 General Lattices and Energy Potentials",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "1",
  pages =        "1--22",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.1",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:23 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.1;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.1",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Vingron:1997:TIM,
  author =       "Martin Vingron and Arndt {Von Haeseler}",
  title =        "Towards Integration of Multiple Alignment and
                 Phylogenetic Tree Construction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "1",
  pages =        "23--34",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.23",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:23 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.23;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.23",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Tanushev:1997:CLT,
  author =       "Miroslav S. Tanushev and Richard Arratia",
  title =        "Central Limit Theorem for Renewal Theory for Several
                 Patterns",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "1",
  pages =        "35--44",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.35",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:23 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.35;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.35",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Bailey:1997:SDS,
  author =       "Timothy L. Bailey and Michael Gribskov",
  title =        "Score Distributions for Simultaneous Matching to
                 Multiple Motifs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "1",
  pages =        "45--59",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.45",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:23 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.45;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.45",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Schbath:1997:CPP,
  author =       "Sophie Schbath",
  title =        "Coverage Processes in Physical Mapping by Anchoring
                 Random Clones",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "1",
  pages =        "61--82",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.61",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:23 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.61;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.61",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Ponomarenko:1997:GPP,
  author =       "Michael P. Ponomarenko and Anna N. Kolchanova and
                 Nikolay A. Kolchanov",
  title =        "Generating Programs for Predicting the Activity of
                 Functional Sites",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "1",
  pages =        "83--90",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.83",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:23 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.83;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.83",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Anantharaman:1997:GOM,
  author =       "Thomas S. Anantharaman and Bud Mishra and David C.
                 Schwartz",
  title =        "Genomics via Optical Mapping {II}: Ordered Restriction
                 Maps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "2",
  pages =        "91--118",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.91",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:25 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.91;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.91",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Dancik:1997:HFC,
  author =       "Vlado Dan{\v{c}}{\'i}k and Sridhar Hannenhalli and S.
                 Muthukrishnan",
  title =        "Hardness of Flip-Cut Problems from Optical Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "2",
  pages =        "119--125",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.119",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:25 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.119;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.119",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Henderson:1997:FGD,
  author =       "John Henderson and Steven Salzberg and Kenneth H.
                 Fasman",
  title =        "Finding Genes in {DNA} with a Hidden {Markov} Model",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "2",
  pages =        "127--141",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.127",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:25 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.127;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.127",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Kearney:1997:SPC,
  author =       "Paul E. Kearney",
  title =        "A Six-Point Condition for Ordinal Matrices",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "2",
  pages =        "143--156",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.143",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:25 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.143;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.143",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Farach:1997:RCD,
  author =       "Martin Farach",
  title =        "Recognizing Circular Decomposable Metrics",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "2",
  pages =        "157--162",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.157",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:25 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.157;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.157",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Hochbaum:1997:PCE,
  author =       "Dorit S. Hochbaum and Anu Pathria",
  title =        "Path Costs in Evolutionary Tree Reconstruction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "2",
  pages =        "163--175",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.163",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:25 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.163;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.163",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Zhang:1997:MMS,
  author =       "Louxin Zhang",
  title =        "On a {Mirkin--Muchnik--Smith} Conjecture for Comparing
                 Molecular Phylogenies",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "2",
  pages =        "177--187",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.177",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:25 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.177;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.177",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Schbath:1997:ESD,
  author =       "Sophie Schbath",
  title =        "An Efficient Statistic to Detect Over- and
                 Under-represented Words in {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "2",
  pages =        "189--192",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.189",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:25 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.189;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.189",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Dalgaard:1997:SMP,
  author =       "Jacob Z. Dalgaard and Michael J. Moser and Richard
                 Hughey and I. Saira Mian",
  title =        "Statistical Modeling, Phylogenetic Analysis and
                 Structure Prediction of a Protein Splicing Domain
                 Common to Inteins and Hedgehog Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "2",
  pages =        "193--214",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.193",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:25 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.193;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.193",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Waterman:1997:PSR,
  author =       "Michael S. Waterman and Sorin Istrail and Pavel A.
                 Pevzner",
  title =        "Preface: Special {RECOMB'97} Issues",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "215--215",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.215",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.215",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Smith:1997:CLP,
  author =       "Temple F. Smith and Loredana {Lo Conte} and Jadwiga
                 Bienkowska and Chrysanthe Gaitatzes and Robert G.
                 {Rogers, Jr.} and Richard Lathrop",
  title =        "Current Limitations to Protein Threading Approaches",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "217--225",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.217",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.217;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.217",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Dill:1997:PSE,
  author =       "K. A. Dill and A. T. Phillips and J. B. Rosen",
  title =        "Protein Structure and Energy Landscape Dependence on
                 Sequence Using a Continuous Energy Function",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "227--239",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.227",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.227;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.227",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Hart:1997:LLS,
  author =       "William E. Hart and Sorin Istrail",
  title =        "Lattice and Off-Lattice Side Chain Models of Protein
                 Folding: Linear Time Structure Prediction Better than
                 86\% of Optimal",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "241--259",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.241",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.241;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.241",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Berger:1997:IMI,
  author =       "Bonnie Berger and Mona Singh",
  title =        "An Iterative Method for Improved Protein Structural
                 Motif Recognition",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "261--273",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.261",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.261;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.261",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Agarwala:1997:LRP,
  author =       "Richa Agarwala and Serafim Batzoglou and Vlado
                 Dan{\v{c}}{\'i}k and Scott E. Decatur and Sridhar
                 Hannenhalli and Martin Farach and S. Muthukrishnan and
                 Steven Skiena",
  title =        "Local Rules for Protein Folding on a Triangular
                 Lattice and Generalized Hydrophobicity in the {HP}
                 Model",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "275--296",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.275",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.275;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.275",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Sze:1997:VAG,
  author =       "Sing-Hoi Sze and Pavel A. Pevzner",
  title =        "{Las Vegas} Algorithms for Gene Recognition:
                 Suboptimal and Error-Tolerant Spliced Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "297--309",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.297",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.297;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.297",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Reese:1997:ISS,
  author =       "Martin G. Reese and Frank H. Eeckman and David Kulp
                 and David Haussler",
  title =        "Improved Splice Site Detection in {Genie}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "311--323",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.311",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.311;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.311",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Xu:1997:AGI,
  author =       "Ying Xu and Edward C. Uberbacher",
  title =        "Automated Gene Identification in Large-Scale Genomic
                 Sequences$^1$",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "325--338",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.325",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.325;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.325",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Zhang:1997:ADS,
  author =       "Zheng Zhang and William R. Pearson and Webb Miller",
  title =        "Aligning a {DNA} Sequence with a Protein Sequence",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "339--349",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.339",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.339;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.339",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Benson:1997:SAT,
  author =       "Gary Benson",
  title =        "Sequence Alignment with Tandem Duplication",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "351--367",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.351",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.351;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.351",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Anson:1997:RPR,
  author =       "Eric L. Anson and Eugene W. Myers",
  title =        "{ReAligner}: a Program for Refining {DNA} Sequence
                 Multi-Alignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "369--383",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.369",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.369;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.369",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Shibuya:1997:NFA,
  author =       "Tetsuo Shibuya and Hiroshi Imai",
  title =        "New Flexible Approaches for Multiple Sequence
                 Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "385--413",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.385",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.385;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.385",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Schwikowski:1997:DPH,
  author =       "Benno Schwikowski and Martin Vingron",
  title =        "The Deferred Path Heuristic for the Generalized Tree
                 Alignment Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "3",
  pages =        "415--431",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.415",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:27 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.415;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.415",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Christof:1997:BCA,
  author =       "Thomas Christof and Michael J{\"u}nger and John
                 Kececioglu and Petra Mutzel and Gerhard Reinelt",
  title =        "A Branch-and-Cut Approach to Physical Mapping of
                 Chromosomes by Unique End-Probes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "4",
  pages =        "433--447",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.433",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:30 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.433;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.433",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Jain:1997:ACI,
  author =       "Mudita Jain and Eugene W. Myers",
  title =        "Algorithms for Computing and Integrating Physical Maps
                 Using Unique Probes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "4",
  pages =        "449--466",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.449",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:30 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.449;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.449",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Sun:1997:PSE,
  author =       "Fengzhu Sun and Gary Benson and Norm Arnheim and
                 Michael Waterman",
  title =        "Pooling Strategies for Establishing Physical Genome
                 Maps Using {FISH}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "4",
  pages =        "467--486",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.467",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:30 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.467;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.467",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Slonim:1997:BHG,
  author =       "Donna Slonim and Leonid Kruglyak and Lincoln Stein and
                 Eric Lander",
  title =        "Building Human Genome Maps with Radiation Hybrids",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "4",
  pages =        "487--504",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.487",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:30 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.487;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.487",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Heath:1997:MCM,
  author =       "S. C. Heath",
  title =        "{Markov} Chain {Monte Carlo} Methods for Radiation
                 Hybrid Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "4",
  pages =        "505--515",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.505",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:30 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.505;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.505",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Ben-Dor:1997:CRH,
  author =       "Amir Ben-Dor and Benny Chor",
  title =        "On Constructing Radiation Hybrid Maps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "4",
  pages =        "517--533",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.517",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:30 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.517;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.517",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Lin:1997:AHA,
  author =       "Shili Lin and Terence P. Speed",
  title =        "An Algorithm for Haplotype Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "4",
  pages =        "535--546",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.535",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:30 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.535;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.535",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Cohen:1997:NTD,
  author =       "Jaime Cohen and Martin Farach",
  title =        "Numerical Taxonomy on Data: Experimental Results",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "4",
  pages =        "547--558",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.547",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:30 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.547;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.547",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Sankoff:1997:CSI,
  author =       "David Sankoff and Vincent Ferretti and Joseph H.
                 Nadeau",
  title =        "Conserved Segment Identification",
  journal =      j-J-COMPUT-BIOL,
  volume =       "4",
  number =       "4",
  pages =        "559--565",
  month =        jan,
  year =         "1997",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1997.4.559",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:30 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1997.4.559;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1997.4.559",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "1 April 2009",
}

@Article{Kruglyak:1998:FML,
  author =       "Leonid Kruglyak and Eric S. Lander",
  title =        "Faster Multipoint Linkage Analysis Using {Fourier}
                 Transforms",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "1--7",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.1",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.1;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.1",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Kosaraju:1998:AAG,
  author =       "S. Rao Kosaraju and Alejandro A. Sch{\"a}ffer and
                 Leslie G. Biesecker",
  title =        "Approximation Algorithms for a Genetic Diagnostics
                 Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "9--26",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.9",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.9;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.9",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Berger:1998:PFH,
  author =       "Bonnie Berger and Tom Leighton",
  title =        "Protein Folding in the Hydrophobic--Hydrophilic ({{\em
                 HP\/}}) Model is {NP}-Complete",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "27--40",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.27",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.27;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.27",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Escalier:1998:PMI,
  author =       "Vincent Escalier and Jo{\'e}l Pothier and Henri
                 Soldano and Alain Viari",
  title =        "Pairwise and Multiple Identification of
                 Three-Dimensional Common Substructures in Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "41--56",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.41",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.41;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.41",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Mian:1998:SMP,
  author =       "I. Saira Mian and Michael J. Moser and William R.
                 Holley and Aloke Chatterjee",
  title =        "Statistical Modelling and Phylogenetic Analysis of a
                 Deaminase Domain",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "57--72",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.57",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.57;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.57",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Bentil:1998:MSM,
  author =       "Daniel E. Bentil",
  title =        "Modelling and Simulation of Motility in Actomyosin
                 Systems",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "73--86",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.73",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.73;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.73",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Benson:1998:DTM,
  author =       "Gary Benson and Xiaoping Su",
  title =        "On the Distribution of {$K$}-tuple Matches for
                 Sequence Homology: a Constant Time Exact Calculation of
                 the Variance",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "87--100",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.87",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.87;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.87",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Siegel:1998:EVT,
  author =       "Andrew F. Siegel and Jared C. Roach and Ger {Van Den
                 Engh}",
  title =        "Expectation and Variance of True and False Fragment
                 Matches in {DNA} Restriction Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "101--111",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.101",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.101;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.101",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Siegel:1998:ORF,
  author =       "Andrew F. Siegel and Jared C. Roach and Charles
                 Magness and Ed Thayer and Ger {Van Den Engh}",
  title =        "Optimization of Restriction Fragment {DNA} Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "113--126",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.113",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.113;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.113",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Wang:1998:CAT,
  author =       "Lusheng Wang and Dan Gusfield",
  title =        "Constructing Additive Trees When the Error Is Small",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "127--133",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.127",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.127;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.127",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Eulenstein:1998:DBM,
  author =       "O. Eulenstein and B. Mirkin and M. Vingron",
  title =        "Duplication-Based Measures of Difference Between Gene
                 and Species Trees",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "135--148",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.135",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.135;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.135",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{VonHaeseler:1998:EDA,
  author =       "Arndt {Von Haeseler} and Michael Sch{\"o}niger",
  title =        "Evolution of {DNA} or Amino Acid Sequences with
                 Dependent Sites",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "149--163",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.149",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.149;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.149",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Kruglyak:1998:MSH,
  author =       "Semyon Kruglyak",
  title =        "Multistage Sequencing by Hybridization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "1",
  pages =        "165--171",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.165",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:32 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.165;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.165",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Apostolico:1998:SAM,
  author =       "Alberto Apostolico and Raffaele Giancarlo",
  title =        "Sequence Alignment in Molecular Biology",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "173--196",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.173",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.173;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.173",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Zhang:1998:ALS,
  author =       "Zheng Zhang and Piotr Berman and Webb Miller",
  title =        "Alignments Without Low-Scoring Regions",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "197--210",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.197",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.197;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.197",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Bailey:1998:MSC,
  author =       "Timothy L. Bailey and Michael Gribskov",
  title =        "Methods and Statistics for Combining Motif Match
                 Scores",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "211--221",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.211",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.211;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.211",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Reinert:1998:CPP,
  author =       "Gesine Reinert and Sophie Schbath",
  title =        "Compound {Poisson} and {Poisson} Process
                 Approximations for Occurrences of Multiple Words in
                 {Markov} Chains",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "223--253",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.223",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.223;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.223",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Smith:1998:SBA,
  author =       "Lloyd M. Smith and Robert M. Corn and Anne E. Condon
                 and Max G. Lagally and Anthony G. Frutos and Qinghua
                 Liu and Andrew J. Thiel",
  title =        "A Surface-Based Approach to {DNA} Computation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "255--267",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.255",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.255;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.255",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Liu:1998:DCS,
  author =       "Qinghua Liu and Anthony G. Frutos and Andrew J. Thiel
                 and Robert M. Corn and Lloyd M. Smith",
  title =        "{DNA} Computing on Surfaces: Encoding Information at
                 the Single Base Level",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "269--278",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.269",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.269;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.269",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Brazma:1998:AAD,
  author =       "Alvis Brazma and Inge Jonassen and Ingvar Eidhammer
                 and David Gilbert",
  title =        "Approaches to the Automatic Discovery of Patterns in
                 Biosequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "279--305",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.279",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.279;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.279",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Laub:1998:FIE,
  author =       "Michael T. Laub and Douglas W. Smith",
  title =        "Finding Intron/Exon Splice Junctions Using {INFO},
                 {INterruption} Finder and Organizer",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "307--321",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.307",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.307;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.307",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Browning:1998:RIC,
  author =       "Sharon Browning",
  title =        "Relationship Information Contained in Gamete Identity
                 by Descent Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "323--334",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.323",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.323;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.323",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Przytycka:1998:TRA,
  author =       "Teresa M. Przytycka",
  title =        "Transforming Rooted Agreement into Unrooted
                 Agreement",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "335--349",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.335",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.335;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.335",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Benhabiles:1998:DAP,
  author =       "Nora Benhabil{\`e}s and Xavier Gallet and Annick
                 Thomas-Soumarmon and Robert Brasseur",
  title =        "A Descriptive Analysis of Populations of
                 Three-Dimensional Structures Calculated from Primary
                 Sequences of Proteins by {OSIRIS}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "2",
  pages =        "351--366",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.351",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.351;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.351",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Pevzner:1998:P,
  author =       "Pavel A. Pevzner",
  title =        "Preface",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "367--367",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.367",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.367",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Badretdinov:1998:HHC,
  author =       "Azat Ya Badretdinov and Alexei V. Finkelstein",
  title =        "How Homologs Can Help to Predict Protein Folds Even
                 Though They Cannot Be Predicted for Individual
                 Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "369--376",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.369",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.369;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.369",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Ben-Dor:1998:CPQ,
  author =       "Amir Ben-Dor and Benny Chor and Dan Graur and Ron
                 Ophir and Dan Pelleg",
  title =        "Constructing Phylogenies from Quartets: Elucidation of
                 {Eutherian} Superordinal Relationships",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "377--390",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.377",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.377;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.377",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Bonet:1998:BMS,
  author =       "Maria Bonet and Mike Steel and Tandy Warnow and Shibu
                 Yooseph",
  title =        "Better Methods for Solving Parsimony and
                 Compatibility",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "391--407",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.391",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.391;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.391",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Chen:1998:HOM,
  author =       "Cheng Che Chen and Jas Winder Pal Singh and Russ B.
                 Altman",
  title =        "Hierarchical Organization of Molecular Structure
                 Computations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "409--422",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.409",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.409;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.409",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Crescenzi:1998:CPF,
  author =       "Pierluigi Crescenzi and Deborah Goldman and Christos
                 Papadimitriou and Antonio Piccolboni and Mihalis
                 Yannakakis",
  title =        "On the Complexity of Protein Folding",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "423--465",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.423",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.423;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.423",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Gelfand:1998:ADC,
  author =       "Israel Gelfand and Alexander Kister and Casimir
                 Kulikowski and Ognyan Stoyanov",
  title =        "Algorithmic Determination of Core Positions in the {$
                 V_L $} and {$ V_H $} Domains of Immunoglobulin
                 Molecules",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "467--477",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.467",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.467;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.467",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Grundy:1998:HDF,
  author =       "William Noble Grundy",
  title =        "Homology Detection via Family Pairwise Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "479--491",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.479",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.479;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.479",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Holmes:1998:DPA,
  author =       "Ian Holmes and Richard Durbin",
  title =        "Dynamic Programming Alignment Accuracy",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "493--504",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.493",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.493;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.493",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Lee:1998:ERS,
  author =       "Jae K. Lee and Vlado Dan{\v{c}}{\'\i}k and Michael S.
                 Waterman",
  title =        "Estimation for Restriction Sites Observed by Optical
                 Mapping Using Reversible-Jump {Markov} Chain {Monte}
                 {Carlo}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "505--515",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.505",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.505;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.505",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Lenhof:1998:PAR,
  author =       "Hans-Peter Lenhof and Knut Reinert and Martin
                 Vingron",
  title =        "A Polyhedral Approach to {RNA} Sequence Structure
                 Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "517--530",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.517",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.517;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.517",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Reva:1998:OPS,
  author =       "Boris A. Reva and D. S. Rykunov and Alexei V.
                 Finkelstein and Jeffrey Skolnick",
  title =        "Optimization of Protein Structure on Lattices Using a
                 Self-Consistent Field Approach",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "531--538",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.531",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.531;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.531",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Sagot:1998:ISP,
  author =       "Marie-France Sagot and Eugene W. Myers",
  title =        "Identifying Satellites and Periodic Repetitions in
                 Biological Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "539--553",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.539",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.539;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.539",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Sankoff:1998:MGR,
  author =       "David Sankoff and Mathieu Blanchette",
  title =        "Multiple Genome Rearrangement and Breakpoint
                 Phylogeny",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "555--570",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.555",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.555;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.555",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Walker:1998:ACD,
  author =       "Wynn L. Walker and David S. Goodsell and Elliot M.
                 Landaw",
  title =        "An Analysis of a Class of {DNA} Sequence Reading
                 Molecules",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "571--583",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.571",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.571;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.571",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Wu:1998:RAM,
  author =       "Thomas D. Wu and Scott C. Schmidler and Trevor Hastie
                 and Douglas L. Brutlag",
  title =        "Regression Analysis of Multiple Protein Structures",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "585--595",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.585",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.585;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.585",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Xu:1998:ECM,
  author =       "Ying Xu and Dong Xu and Edward C. Uberbacher",
  title =        "An Efficient Computational Method for Globally Optimal
                 Threading1",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "3",
  pages =        "597--614",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.597",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:37 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.597;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.597",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Roweis:1998:SBM,
  author =       "Sam Roweis and Erik Winfree and Richard Burgoyne and
                 Nickolas V. Chelyapov and Myron F. Goodman and Paul W.
                 K. Rothemund and Leonard M. Adleman",
  title =        "A Sticker-Based Model for {DNA} Computation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "615--629",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.615",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.615;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.615",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Sandak:1998:MBS,
  author =       "Bilha Sandak and Ruth Nussinov and Haim J. Wolfson",
  title =        "A Method for Biomolecular Structural Recognition and
                 Docking Allowing Conformational Flexibility",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "631--654",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.631",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.631;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.631",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Wong:1998:TRB,
  author =       "Wing Hung Wong and Yan Cui and Run Sheng Chen",
  title =        "Torsional Relaxation for Biopolymers",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "655--665",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.655",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.655;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.655",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Salzberg:1998:DTS,
  author =       "Steven Salzberg and Arthur L. Delcher and Kenneth H.
                 Fasman and John Henderson",
  title =        "A Decision Tree System for Finding Genes in {DNA}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "667--680",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.667",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.667;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.667",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Guigo:1998:AGP,
  author =       "Roderic Guig{\'o}",
  title =        "Assembling Genes from Predicted Exons in Linear Time
                 with Dynamic Programming",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "681--702",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.681",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.681;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.681",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Mallios:1998:ISD,
  author =       "Ronna R. Mallios",
  title =        "Iterative Stepwise Discriminant Analysis: a
                 Meta-Algorithm for Detecting Quantitative Sequence
                 Motifs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "703--711",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.703",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.703;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.703",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Evans:1998:CCP,
  author =       "Steven N. Evans and Xiaowen Zhou",
  title =        "Constructing and Counting Phylogenetic Invariants",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "713--724",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.713",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.713;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.713",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Parida:1998:UFO,
  author =       "Laxmi Parida",
  title =        "A Uniform Framework for Ordered Restriction Map
                 Problems",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "725--739",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.725",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.725;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.725",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Tran:1998:ECS,
  author =       "Nicholas Tran",
  title =        "An Easy Case of Sorting by Reversals",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "741--746",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.741",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.741;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.741",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Takai-Igarashi:1998:DCS,
  author =       "Takako Takai-Igarashi and Yoko Nadaoka and Tsuguchika
                 Kaminuma",
  title =        "A Database for Cell Signaling Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "5",
  number =       "4",
  pages =        "747--754",
  month =        jan,
  year =         "1998",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1998.5.747",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:39 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1998.5.747;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1998.5.747",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 March 2009",
}

@Article{Berger:1999:SSC,
  author =       "Bonnie Berger and Gunnar W. Hoest and James R. Paulson
                 and Peter W. Shor",
  title =        "On the Structure of the Scaffolding Core of
                 Bacteriophage {T4}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "1",
  pages =        "1--12",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.1",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:42 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.1;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.1",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Nayak:1999:SCH,
  author =       "Ashwin Nayak and Alistair Sinclair and Uri Zwick",
  title =        "Spatial Codes and the Hardness of String Folding
                 Problems",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "1",
  pages =        "13--36",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.13",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:42 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.13;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.13",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Desper:1999:ITM,
  author =       "Richard Desper and Feng Jiang and Olli-P. Kallioniemi
                 and Holger Moch and Christos H. Papadimitriou and
                 Alejandro A. Sch{\"a}ffer",
  title =        "Inferring Tree Models for Oncogenesis from Comparative
                 Genome Hybridization Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "1",
  pages =        "37--51",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.37",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:42 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.37;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.37",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Adleman:1999:AMC,
  author =       "Leonard M. Adleman and Paul W. K. Rothemund and Sam
                 Roweis and Erik Winfree",
  title =        "On Applying Molecular Computation to the {Data
                 Encryption Standard}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "1",
  pages =        "53--63",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.53",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:42 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/cryptography1990.bib;
                 http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.53;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.53",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Roweis:1999:RED,
  author =       "Sam Roweis and Erik Winfree",
  title =        "On the Reduction of Errors in {DNA} Computation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "1",
  pages =        "65--75",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.65",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:42 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.65;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.65",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Sun:1999:MDS,
  author =       "Fengzhu Sun",
  title =        "Modeling {DNA} Shuffling",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "1",
  pages =        "77--90",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.77",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:42 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.77;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.77",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Mott:1999:ASG,
  author =       "Richard Mott and Roger Tribe",
  title =        "Approximate Statistics of Gapped Alignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "1",
  pages =        "91--112",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.91",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:42 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.91;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.91",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Blazewicz:1999:DSP,
  author =       "J. B{\l}a{\.z}ewicz and P. Formanowicz and M. Kasprzak
                 and W. T. Markiewicz and J. W{\c{e}}glarz",
  title =        "{DNA} Sequencing With Positive and Negative Errors",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "1",
  pages =        "113--123",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.113",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:42 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.113;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.113",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Loewenstern:1999:SLE,
  author =       "David Loewenstern and Peter N. Yianilos",
  title =        "Significantly Lower Entropy Estimates for Natural
                 {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "1",
  pages =        "125--142",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.125",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:42 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.125;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.125",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Istrail:1999:LSA,
  author =       "S. Istrail and R. Schwartz and J. King",
  title =        "Lattice Simulations of Aggregation Funnels for Protein
                 Folding",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "2",
  pages =        "143--162",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.143",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.143;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.143",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Kim:1999:ASP,
  author =       "Sun Kim and Alberto Maria Segre",
  title =        "{AMASS}: a Structured Pattern Matching Approach to
                 Shotgun Sequence Assembly",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "2",
  pages =        "163--186",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.163",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.163;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.163",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Fasulo:1999:AAM,
  author =       "Dan Fasulo and Tao Jiang and Richard M. Karp and
                 Reuben J. Settergren and Ed Thayer",
  title =        "An Algorithmic Approach to Multiple Complete Digest
                 Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "2",
  pages =        "187--207",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.187",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.187;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.187",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Wang:1999:NTD,
  author =       "Jason T. L. Wang and Steve Rozen and Bruce A. Shapiro
                 and Dennis Shasha and Zhiyuan Wang and Maisheng Yin",
  title =        "New Techniques for {DNA} Sequence Classification",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "2",
  pages =        "209--218",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.209",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.209;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.209",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Wu:1999:MRS,
  author =       "Thomas D. Wu and Craig G. Nevill-Manning and Douglas
                 L. Brutlag",
  title =        "Minimal-Risk Scoring Matrices for Sequence Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "2",
  pages =        "219--235",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.219",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.219;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.219",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Mayraz:1999:CPM,
  author =       "Guy Mayraz and Ron Shamir",
  title =        "Construction of Physical Maps from Oligonucleotide
                 Fingerprints Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "2",
  pages =        "237--252",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.237",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.237;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.237",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Yu:1999:PSS,
  author =       "Lihua Yu and Temple F. Smith",
  title =        "Positional Statistical Significance in Sequence
                 Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "2",
  pages =        "253--259",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.253",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.253;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.253",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Churchill:1999:BRH,
  author =       "Gary A. Churchill and Betty Lazareva",
  title =        "{Bayesian} Restoration of a Hidden {Markov} Chain with
                 Applications to {DNA} Sequencing",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "2",
  pages =        "261--277",
  month =        jan,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.1999.6.261",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.1999.6.261;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.1999.6.261",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "7 May 2009",
}

@Article{Istrail:1999:SRI,
  author =       "Sorin Istrail",
  title =        "Special {RECOMB'99} Issue",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "279--279",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318265",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ben-Dor:1999:CGE,
  author =       "Amir Ben-Dor and Ron Shamir and Zohar Yakhini",
  title =        "Clustering Gene Expression Patterns",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "281--297",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318274",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bienkowska:1999:PTS,
  author =       "Jadwiga R. Bie{\'n}kowska and Robert G. {Rogers, Jr.}
                 and Temple F. Smith",
  title =        "Performance of Threading Scoring Functions Designed
                 Using New Optimization Method",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "299--311",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318283",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Chew:1999:FDC,
  author =       "L. Paul Chew and Dan Huttenlocher and Klara Kedem and
                 Jon Kleinberg",
  title =        "Fast Detection of Common Geometric Substructure in
                 Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "313--325",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318292",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Dancik:1999:NPS,
  author =       "Vlado Dan{\v{c}}{\'\i}k and Theresa A. Addona and Karl
                 R. Clauser and James E. Vath and Pavel A. Pevzner",
  title =        "{{\em {De} Novo\/}} Peptide Sequencing via Tandem Mass
                 Spectrometry",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "327--342",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318300",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Forst:1999:EMN,
  author =       "Christian V. Forst and Klaus Schulten",
  title =        "Evolution of Metabolisms: a New Method for the
                 Comparison of Metabolic Pathways Using Genomics
                 Information",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "343--360",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318319",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Frieze:1999:ORS,
  author =       "Alan M. Frieze and Franco P. Preparata and Eli Upfal",
  title =        "Optimal Reconstruction of a Sequence from its Probes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "361--368",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318328",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Huson:1999:DCF,
  author =       "Daniel H. Huson and Scott M. Nettles and Tandy J.
                 Warnow",
  title =        "Disk-Covering, a Fast-Converging Method for
                 Phylogenetic Tree Reconstruction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "369--386",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318337",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Kleinberg:1999:EAP,
  author =       "Jon M. Kleinberg",
  title =        "Efficient Algorithms for Protein Sequence Design and
                 the Analysis of Certain Evolutionary Fitness
                 Landscapes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "387--404",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318346",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lathrop:1999:ALG,
  author =       "Richard H. Lathrop",
  title =        "An Anytime Local-to-Global Optimization Algorithm for
                 Protein Threading in O(m$^2$ {\~n}$^2$ ) Space",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "405--418",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318355",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Pachter:1999:DBA,
  author =       "Lior Pachter and Serafim Batzoglou and Valentin I.
                 Spitkovsky and Eric Banks and Eric S. Lander and Daniel
                 J. Kleitman and Bonnie Berger",
  title =        "A Dictionary-Based Approach for Gene Annotation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "419--430",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318364",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Sankoff:1999:PIG,
  author =       "David Sankoff and Mathieu Blanchette",
  title =        "Phylogenetic Invariants for Genome Rearrangements",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "431--445",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318373",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Willett:1999:DBA,
  author =       "Peter Willett",
  title =        "Dissimilarity-Based Algorithms for Selecting
                 Structurally Diverse Sets of Compounds",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "447--457",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318382",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wooley:1999:TCB,
  author =       "John C. Wooley",
  title =        "Trends in Computational Biology: a Summary Based on a
                 {RECOMB} Plenary Lecture, 1999",
  journal =      j-J-COMPUT-BIOL,
  volume =       "6",
  number =       "3--4",
  pages =        "459--474",
  month =        oct,
  year =         "1999",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652799318391",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Reinert:2000:PSP,
  author =       "Gesine Reinert and Sophie Schbath and Michael S.
                 Waterman",
  title =        "Probabilistic and Statistical Properties of Words: An
                 Overview",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "1--46",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081360",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Schbath:2000:ENC,
  author =       "Sophie Schbath and Nathalie Bossard and Simon
                 Tavar{\'e}",
  title =        "The Effect of Nonhomogeneous Clone Length Distribution
                 on the Progress of an {STS} Mapping Project",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "47--57",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081379",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bafna:2000:LRP,
  author =       "Vineet Bafna and Sridhar Hannenhalli and Ken Rice and
                 Lisa Vawter",
  title =        "Ligand-Receptor Pairing Via Tree Comparison",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "59--70",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081388",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Apostolico:2000:EDU,
  author =       "Alberto Apostolico and Mary Ellen Bock and Stefano
                 Lonardi and Xuyan Xu",
  title =        "Efficient Detection of Unusual Words",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "71--94",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081397",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Jaakkola:2000:DFD,
  author =       "Tommi Jaakkola and Mark Diekhans and David Haussler",
  title =        "A Discriminative Framework for Detecting Remote
                 Protein Homologies",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "95--114",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081405",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Drasdo:2000:SLS,
  author =       "Dirk Drasdo and Terence Hwa and Michael L{\"a}ssig",
  title =        "Scaling Laws and Similarity Detection in Sequence
                 Alignment with Gaps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "115--141",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081414",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wang:2000:EMR,
  author =       "Dai Wang and Cheng Zhao and Rong Cheng and Fengzhu
                 Sun",
  title =        "Estimation of the Mutation Rate During Error-prone
                 Polymerase Chain Reaction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "143--158",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081423",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{McGuire:2000:BMD,
  author =       "Gr{\'a}inne McGuire and Frank Wright and Michael J.
                 Prentice",
  title =        "A {Bayesian} Model for Detecting Past Recombination
                 Events in {DNA} Multiple Alignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "159--170",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081432",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Fekete:2000:PRB,
  author =       "Martin Fekete and Ivo L. Hofacker and Peter F.
                 Stadler",
  title =        "Prediction of {RNA} Base Pairing Probabilities on
                 Massively Parallel Computers",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "171--182",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081441",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Berezovsky:2000:HRA,
  author =       "Igor N. Berezovsky and Natalia G. Esipova and Vladimir
                 G. Tumanyan",
  title =        "Hierarchy of Regions of Amino Acid Sequence with
                 Respect to Their Role in the Protein Spatial
                 Structure",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "183--192",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081450",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Schbath:2000:ODW,
  author =       "Sophie Schbath",
  title =        "An Overview on the Distribution of Word Counts in
                 {Markov} Chains",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "193--201",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081469",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Zhang:2000:GAA,
  author =       "Zheng Zhang and Scott Schwartz and Lukas Wagner and
                 Webb Miller",
  title =        "A Greedy Algorithm for Aligning {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "203--214",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081478",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ramensky:2000:DST,
  author =       "V. E. Ramensky and V. Ju. Makeev and M. A. Roytberg
                 and V. G. Tumanyan",
  title =        "{DNA} Segmentation Through the {Bayesian} Approach",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "215--231",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081487",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Schmidler:2000:BSP,
  author =       "Scott C. Schmidler and Jun S. Liu and Douglas L.
                 Brutlag",
  title =        "{Bayesian} Segmentation of Protein Secondary
                 Structure",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "233--248",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081496",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Rodolphe:2000:TCM,
  author =       "Fran{\c{c}}ois Rodolphe and Catherine Math{\'e}",
  title =        "Translation Conditional Models for Protein Coding
                 Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "249--260",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081504",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Gonnet:2000:EMM,
  author =       "Gaston H. Gonnet and Chantal Korostensky and Steve
                 Benner",
  title =        "Evaluation Measures of Multiple Sequence Alignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "261--276",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081513",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Moulton:2000:MRS,
  author =       "Vincent Moulton and Michael Zuker and Michael Steel
                 and Robin Pointon and David Penny",
  title =        "Metrics on {RNA} Secondary Structures",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "277--292",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081522",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Berman:2000:WSD,
  author =       "Piotr Berman and Zheng Zhang and Yuri I. Wolf and
                 Eugene V. Koonin and Webb Miller",
  title =        "Winnowing Sequences from a Database Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "293--302",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081531",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Karp:2000:AOM,
  author =       "Richard M. Karp and Ron Shamir",
  title =        "Algorithms for Optical Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "303--316",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081540",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Thayer:2000:DPC,
  author =       "Edward C. Thayer and Chris Bystroff and David Baker",
  title =        "Detection of Protein Coding Sequences Using a Mixture
                 Model for Local Protein Amino Acid Sequence",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "1--2",
  pages =        "317--327",
  month =        feb,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050081559",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Shamir:2000:PSR,
  author =       "Ron Shamir",
  title =        "Preface: Special {RECOMB 2000} Issue",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "329--330",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050808",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Akutsu:2000:AIB,
  author =       "Tatsuya Akutsu and Satoru Miyano and Satoru Kuhara",
  title =        "Algorithms for Identifying {Boolean} Networks and
                 Related Biological Networks Based on Matrix
                 Multiplication and Fingerprint Function",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "331--343",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050817",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Marsan:2000:AES,
  author =       "Laurent Marsan and Marie-France Sagot",
  title =        "Algorithms for Extracting Structured Motifs Using a
                 Suffix Tree with an Application to Promoter and
                 Regulatory Site Consensus Identification",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "345--362",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050826",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ohkubo:2000:PEF,
  author =       "Y. Zenmei Ohkubo and Gordon M. Crippen",
  title =        "Potential Energy Function for Continuous State Models
                 of Globular Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "363--379",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050835",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Apostolico:2000:OAP,
  author =       "Alberto Apostolico and Gill Bejerano",
  title =        "Optimal Amnesic Probabilistic Automata or How to Learn
                 and Classify Proteins in Linear Time and Space",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "381--393",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050844",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Heber:2000:CSP,
  author =       "Steffen Heber and Jens Stoye and Marcus Frohme and
                 J{\"o}rg Hoheisel and Martin Vingron",
  title =        "Contig Selection in Physical Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "395--408",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050853",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lyngso:2000:RPP,
  author =       "Rune B. Lyngs{\o} and Christian N. S. Pedersen",
  title =        "{RNA} Pseudoknot Prediction in Energy-Based Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "409--427",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050862",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Chen:2000:NPD,
  author =       "Kevin Chen and Dannie Durand and Martin
                 Farach-Colton",
  title =        "{NOTUNG}: a Program for Dating Gene Duplications and
                 Optimizing Gene Family Trees",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "429--447",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050871",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Xu:2000:CMN,
  author =       "Ying Xu and Dong Xu and Oakley H. Crawford and J.
                 Ralph Einstein",
  title =        "A Computational Method for {NMR-Constrained} Protein
                 Threading",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "449--467",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050880",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Sorenson:2000:MSE,
  author =       "Jon M. Sorenson and Teresa Head-Gordon",
  title =        "Matching Simulation and Experiment: a New Simplified
                 Model for Simulating Protein Folding",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "469--481",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050899",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Zien:2000:SIA,
  author =       "Alexander Zien and Ralf Zimmer and Thomas Lengauer",
  title =        "A Simple Iterative Approach to Parameter
                 Optimization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "483--501",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050907",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ben-Dor:2000:UDT,
  author =       "Amir Ben-Dor and Richard Karp and Benno Schwikowski
                 and Zohar Yakhini",
  title =        "Universal {DNA} Tag Systems: a Combinatorial Design
                 Scheme",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "503--519",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050916",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Sankoff:2000:EEE,
  author =       "David Sankoff and David Bryant and M{\'e}lanie
                 Deneault and B. Franz Lang and Gertraud Burger",
  title =        "Early Eukaryote Evolution Based on Mitochondrial Gene
                 Order Breakpoints",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "521--535",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050925",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bailey-Kellogg:2000:NJA,
  author =       "Chris Bailey-Kellogg and Alik Widge and John J. Kelley
                 and Marcelo J. Berardi and John H. Bushweller and Bruce
                 Randall Donald",
  title =        "The {NOESY} Jigsaw: Automated Protein Secondary
                 Structure and Main-Chain Assignment from Sparse,
                 Unassigned {NMR} Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "537--558",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050934",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ben-Dor:2000:TCG,
  author =       "Amir Ben-Dor and Laurakay Bruhn and Nir Friedman and
                 Iftach Nachman and Mich{\`e}l Schummer and Zohar
                 Yakhini",
  title =        "Tissue Classification with Gene Expression Profiles",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "559--583",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050943",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Hart:2000:SFA,
  author =       "Reece K. Hart and Ajay K. Royyuru and Gustavo
                 Stolovitzky and Andrea Califano",
  title =        "Systematic and Fully Automated Identification of
                 Protein Sequence Patterns",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "585--600",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050952",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Friedman:2000:UBN,
  author =       "Nir Friedman and Michal Linial and Iftach Nachman and
                 Dana Pe'er",
  title =        "Using {Bayesian} Networks to Analyze Expression Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "601--620",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050961",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Preparata:2000:SHI,
  author =       "Franco P. Preparata and Eli Upfal",
  title =        "Sequencing-by-Hybridization at the Information-Theory
                 Bound: An Optimal Algorithm",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "621--630",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050970",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Anonymous:2000:ATF,
  author =       "Anonymous",
  title =        "Abstracts from {TIGR's Fourth Annual Conference on
                 Computational Genomics November 16--19, 2000 Baltimore,
                 MD}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "3--4",
  pages =        "631--651",
  month =        aug,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652700750050989",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:52 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lermen:2000:PUA,
  author =       "Martin Lermen and Knut Reinert",
  title =        "The Practical Use of the {$ A* $} Algorithm for Exact
                 Multiple Sequence Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "5",
  pages =        "655--671",
  month =        oct,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701446134",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701446134;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701446134",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Stoyanov:2000:GIC,
  author =       "Ognyan Stoyanov and Alexander Kister and Israel
                 Gelfand and Casimir Kulikowski and Cyrus Chothia",
  title =        "Geometric Invariant Core for the {$ C_L $} and
                 {$C$}$_{H 1}$ Domains of Immunoglobulin Molecules",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "5",
  pages =        "673--684",
  month =        oct,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701446143",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701446143;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701446143",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Eidhammer:2000:SCS,
  author =       "Ingvar Eidhammer and Inge Jonassen and William R.
                 Taylor",
  title =        "Structure Comparison and Structure Patterns",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "5",
  pages =        "685--716",
  month =        oct,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701446152",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701446152;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701446152",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Cawley:2000:DST,
  author =       "Simon E. Cawley and Terence P. Speed",
  title =        "{DNA} Sequencing with Transposons",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "5",
  pages =        "717--729",
  month =        oct,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701446161",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701446161;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701446161",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Makarenkov:2000:CAT,
  author =       "Vladimir Makarenkov and Bruno Leclerc",
  title =        "Comparison of Additive Trees Using Circular Orders",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "5",
  pages =        "731--744",
  month =        oct,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701446170",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701446170;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701446170",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Karp:2000:ACD,
  author =       "Richard M. Karp and Itsik Pe'er and Ron Shamir",
  title =        "An Algorithm Combining Discrete and Continuous Methods
                 for Optical Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "5",
  pages =        "745--760",
  month =        oct,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701446189",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701446189;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701446189",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Muller:2000:MAA,
  author =       "Tobias M{\"u}ller and Martin Vingron",
  title =        "Modeling Amino Acid Replacement",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "6",
  pages =        "761--776",
  month =        dec,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050514918",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:57 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270050514918;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270050514918",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Pevzner:2000:MTP,
  author =       "Pavel A. Pevzner and Vlado Dan{\v{c}}{\'\i}k and Chris
                 L. Tang",
  title =        "Mutation-Tolerant Protein Identification by Mass
                 Spectrometry",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "6",
  pages =        "777--787",
  month =        dec,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050514927",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:57 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270050514927;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270050514927",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Desper:2000:DBR,
  author =       "Richard Desper and Feng Jiang and Olli-P. Kallioniemi
                 and Holger Moch and Christos H. Papadimitriou and
                 Alejandro A. Sch{\"a}ffer",
  title =        "Distance-Based Reconstruction of Tree Models for
                 Oncogenesis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "6",
  pages =        "789--803",
  month =        dec,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050514936",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:57 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270050514936;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270050514936",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ideker:2000:TDE,
  author =       "Trey Ideker and Vesteinn Thorsson and Andrew F. Siegel
                 and Leroy E. Hood",
  title =        "Testing for Differentially-Expressed Genes by
                 Maximum-Likelihood Analysis of Microarray Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "6",
  pages =        "805--817",
  month =        dec,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050514945",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:57 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270050514945;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270050514945",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Kerr:2000:AVG,
  author =       "M. Kathleen Kerr and Mitchell Martin and Gary A.
                 Churchill",
  title =        "Analysis of Variance for Gene Expression Microarray
                 Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "6",
  pages =        "819--837",
  month =        dec,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050514954",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:57 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270050514954;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270050514954",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Faulhammer:2000:FEL,
  author =       "Dirk Faulhammer and Richard J. Lipton and Laura F.
                 Landweber",
  title =        "Fidelity of Enzymatic Ligation for {DNA} Computing",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "6",
  pages =        "839--848",
  month =        dec,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050514963",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:57 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270050514963;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270050514963",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Mian:2000:RRA,
  author =       "I. S. Mian and I. Dubchak",
  title =        "Representing and Reasoning about Protein Families
                 Using Generative and Discriminative Methods",
  journal =      j-J-COMPUT-BIOL,
  volume =       "7",
  number =       "6",
  pages =        "849--862",
  month =        dec,
  year =         "2000",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270050514972",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:57 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270050514972;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270050514972",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Landau:2001:AAT,
  author =       "Gad M. Landau and Jeanette P. Schmidt and Dina Sokol",
  title =        "An Algorithm for Approximate Tandem Repeats",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "1",
  pages =        "1--18",
  month =        feb,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300099038",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:59 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300099038;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300099038",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bailey-Kellogg:2001:RMD,
  author =       "Chris Bailey-Kellogg and John J. Kelleyiii and Cliff
                 Stein and Bruce Randall Donald",
  title =        "Reducing Mass Degeneracy in {SAR} by {MS} by Stable
                 Isotopic Labeling",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "1",
  pages =        "19--36",
  month =        feb,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300099056",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:59 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300099056;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300099056",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Newton:2001:DVE,
  author =       "M. A. Newton and C. M. Kendziorski and C. S. Richmond
                 and F. R. Blattner and K. W. Tsui",
  title =        "On Differential Variability of Expression Ratios:
                 Improving Statistical Inference about Gene Expression
                 Changes from Microarray Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "1",
  pages =        "37--52",
  month =        feb,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300099074",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:59 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300099074;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300099074",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Liben-Nowell:2001:SSD,
  author =       "David Liben-Nowell",
  title =        "On the Structure of Syntenic Distance",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "1",
  pages =        "53--67",
  month =        feb,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300099092",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:59 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300099092;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300099092",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wang:2001:PPN,
  author =       "Lusheng Wang and Kaizhong Zhang and Louxin Zhang",
  title =        "Perfect Phylogenetic Networks with Recombination",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "1",
  pages =        "69--78",
  month =        feb,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300099119",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:59 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300099119;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300099119",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Charleston:2001:HHP,
  author =       "Michael A. Charleston",
  title =        "Hitch-Hiking: a Parallel Heuristic Search Strategy,
                 Applied to the Phylogeny Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "1",
  pages =        "79--91",
  month =        feb,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300099137",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:46:59 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300099137;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300099137",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Leibowitz:2001:MGE,
  author =       "Nathaniel Leibowitz and Ruth Nussinov and Haim J.
                 Wolfson",
  title =        "{MUSTA} --- a General, Efficient, Automated Method for
                 Multiple Structure Alignment and Detection of Common
                 Motifs: Application to Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "2",
  pages =        "93--121",
  month =        apr,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300312896",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300312896;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300312896",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Gilbert:2001:ETC,
  author =       "Peter B. Gilbert and Vladimir A. Novitsky and Monty A.
                 Montano and Max Essex",
  title =        "An Efficient Test for Comparing Sequence Diversity
                 between Two Populations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "2",
  pages =        "123--139",
  month =        apr,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300312904",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300312904;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300312904",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Hubbell:2001:MSH,
  author =       "Earl Hubbell",
  title =        "Multiplex Sequencing by Hybridization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "2",
  pages =        "141--149",
  month =        apr,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300312913",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300312913;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300312913",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Elhai:2001:DBR,
  author =       "Jeff Elhai",
  title =        "Determination of Bias in the Relative Abundance of
                 Oligonucleotides in {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "2",
  pages =        "151--175",
  month =        apr,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300312922",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300312922;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300312922",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Dewey:2001:SAA,
  author =       "T. Gregory Dewey",
  title =        "A Sequence Alignment Algorithm with an Arbitrary Gap
                 Penalty Function",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "2",
  pages =        "177--190",
  month =        apr,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300312931",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300312931;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300312931",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Zhao:2001:RIU,
  author =       "Hongyu Zhao and Feng Liang",
  title =        "On Relationship Inference Using Gamete Identity by
                 Descent Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "2",
  pages =        "191--200",
  month =        apr,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701300312940",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701300312940;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701300312940",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Marathe:2001:CDW,
  author =       "Amit Marathe and Anne E. Condon and Robert M. Corn",
  title =        "On Combinatorial {DNA} Word Design",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "3",
  pages =        "201--219",
  month =        jun,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270152530818",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270152530818;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270152530818",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Gu:2001:MMF,
  author =       "Xun Gu",
  title =        "Mathematical Modeling for Functional Divergence after
                 Gene Duplication",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "3",
  pages =        "221--234",
  month =        jun,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270152530827",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270152530827;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270152530827",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Nicodeme:2001:FAM,
  author =       "Pierre Nicod{\`e}me",
  title =        "Fast Approximate Motif Statistics",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "3",
  pages =        "235--248",
  month =        jun,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270152530836",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270152530836;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270152530836",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Yu:2001:SSP,
  author =       "Yi-Kuo Yu and Terence Hwa",
  title =        "Statistical Significance of Probabilistic Sequence
                 Alignment and Related Local Hidden {Markov} Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "3",
  pages =        "249--282",
  month =        jun,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270152530845",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270152530845;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270152530845",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Horton:2001:TBB,
  author =       "Paul Horton",
  title =        "Tsukuba {BB}: a Branch and Bound Algorithm for Local
                 Multiple Alignment of {DNA} and Protein Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "3",
  pages =        "283--303",
  month =        jun,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270152530854",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270152530854;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270152530854",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Gusfield:2001:IHS,
  author =       "Dan Gusfield",
  title =        "Inference of Haplotypes from Samples of Diploid
                 Populations: Complexity and Algorithms",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "3",
  pages =        "305--323",
  month =        jun,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270152530863",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270152530863;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270152530863",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Chen:2001:DPA,
  author =       "Ting Chen and Ming-Yang Kao and Matthew Tepel and John
                 Rush and George M. Church",
  title =        "A Dynamic Programming Approach to {De} {Novo} Peptide
                 Sequencing via Tandem Mass Spectrometry",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "3",
  pages =        "325--337",
  month =        jun,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270152530872",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270152530872;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270152530872",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Searls:2001:JGL,
  author =       "David B. Searls",
  title =        "From {\em {Jabberwocky}\/} to Genome: {Lewis Carroll}
                 and Computational Biology",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "3",
  pages =        "339--348",
  month =        jun,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270152530881",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270152530881;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270152530881",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Robin:2001:NCS,
  author =       "St{\'e}phane Robin and Sophie Schbath",
  title =        "Numerical Comparison of Several Approximations of the
                 Word Count Distribution in Random Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "4",
  pages =        "349--359",
  month =        sep,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701752236179",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701752236179;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701752236179",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ben-Dor:2001:CPS,
  author =       "A. Ben-Dor and I. Pe'er and R. Shamir and R. Sharan",
  title =        "On the Complexity of Positional Sequencing by
                 Hybridization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "4",
  pages =        "361--371",
  month =        sep,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701752236188",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701752236188;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701752236188",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Mercier:2001:EDL,
  author =       "S. Mercier and J. J. Daudin",
  title =        "Exact Distribution for the Local Score of One i.i.d.
                 Random Sequence",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "4",
  pages =        "373--380",
  month =        sep,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701752236197",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701752236197;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701752236197",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Devauchelle:2001:RMA,
  author =       "C. Devauchelle and A. Grossmann and A. H{\'e}naut and
                 M. Holschneider and M. Monnerot and J. L. Risler and B.
                 Torr{\'e}sani",
  title =        "Rate Matrices for Analyzing Large Families of Protein
                 Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "4",
  pages =        "381--399",
  month =        sep,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701752236205",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701752236205;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701752236205",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Husmeier:2001:DRD,
  author =       "Dirk Husmeier and Frank Wright",
  title =        "Detection of Recombination in {DNA} Multiple
                 Alignments with Hidden {Markov} Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "4",
  pages =        "401--427",
  month =        sep,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701752236214",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701752236214;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701752236214",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wahde:2001:MGR,
  author =       "Mattias Wahde and John Hertz",
  title =        "Modeling Genetic Regulatory Dynamics in Neural
                 Development",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "4",
  pages =        "429--442",
  month =        sep,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701752236223",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701752236223;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701752236223",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Goryachev:2001:UMD,
  author =       "Andrew B. Goryachev and Pascale F. Macgregor and Aled
                 M. Edwards",
  title =        "Unfolding of Microarray Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "4",
  pages =        "443--461",
  month =        sep,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701752236232",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701752236232;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701752236232",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Kruglyak:2001:NES,
  author =       "Semyon Kruglyak and Haixu Tang",
  title =        "A New Estimator of Significance of Correlation in Time
                 Series Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "5",
  pages =        "463--470",
  month =        oct,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753216486",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753216486;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753216486",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lin:2001:AAS,
  author =       "Kuang Lin and Alex C. W. May and William R. Taylor",
  title =        "Amino Acid Substitution Matrices from an Artificial
                 Neural Network Model",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "5",
  pages =        "471--481",
  month =        oct,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753216495",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753216495;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753216495",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bader:2001:LTA,
  author =       "David A. Bader and Bernard M. E. Moret and Mi Yan",
  title =        "A Linear-Time Algorithm for Computing Inversion
                 Distance between Signed Permutations with an
                 Experimental Study",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "5",
  pages =        "483--491",
  month =        oct,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753216503",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753216503;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753216503",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Muggleton:2001:GRU,
  author =       "S. H. Muggleton and C. H. Bryant and A. Srinivasan and
                 A. Whittaker and S. Topp and C. Rawlings",
  title =        "Are Grammatical Representations Useful for Learning
                 from Biological Sequence Data? --- a Case Study",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "5",
  pages =        "493--521",
  month =        oct,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753216512",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753216512;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753216512",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Williams:2001:CGO,
  author =       "Glenn A. Williams and Jonathan M. Dugan and Russ B.
                 Altman",
  title =        "Constrained Global Optimization for Estimating
                 Molecular Structure from Atomic Distances",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "5",
  pages =        "523--547",
  month =        oct,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753216521",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753216521;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753216521",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Storey:2001:AVL,
  author =       "John D. Storey and David Siegmund",
  title =        "Approximate {$P$}-Values for Local Sequence
                 Alignments: Numerical Studies",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "5",
  pages =        "549--556",
  month =        oct,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753216530",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753216530;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753216530",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Rocke:2001:MME,
  author =       "David M. Rocke and Blythe Durbin",
  title =        "A Model for Measurement Error for Gene Expression
                 Arrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "6",
  pages =        "557--569",
  month =        nov,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753307485",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753307485;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753307485",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Chen:2001:AIP,
  author =       "Ting Chen and Jacob D. Jaffe and George M. Church",
  title =        "Algorithms for Identifying Protein Cross-Links via
                 Tandem Mass Spectrometry",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "6",
  pages =        "571--583",
  month =        nov,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753307494",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753307494;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753307494",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Theilhaber:2001:BEF,
  author =       "Joachim Theilhaber and Steven Bushnell and Amanda
                 Jackson and Rainer Fuchs",
  title =        "{Bayesian} Estimation of Fold-Changes in the Analysis
                 of Gene Expression: The {PFOLD} Algorithm",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "6",
  pages =        "585--614",
  month =        nov,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753307502",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753307502;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753307502",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Just:2001:CCM,
  author =       "Winfried Just",
  title =        "Computational Complexity of Multiple Sequence
                 Alignment with {SP-Score}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "6",
  pages =        "615--623",
  month =        nov,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753307511",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753307511;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753307511",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wolfinger:2001:AGS,
  author =       "Russell D. Wolfinger and Greg Gibson and Elizabeth D.
                 Wolfinger and Lee Bennett and Hisham Hamadeh and Pierre
                 Bushel and Cynthia Afshari and Richard S. Paules",
  title =        "Assessing Gene Significance from {cDNA} Microarray
                 Expression Data via Mixed Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "6",
  pages =        "625--637",
  month =        nov,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753307520",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753307520;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753307520",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Baggerly:2001:IDE,
  author =       "Keith A. Baggerly and Kevin R. Coombes and Kenneth R.
                 Hess and David N. Stivers and Lynne V. Abruzzo and Wei
                 Zhang",
  title =        "Identifying Differentially Expressed Genes in {cDNA}
                 Microarray Experiments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "8",
  number =       "6",
  pages =        "639--659",
  month =        nov,
  year =         "2001",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652701753307539",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652701753307539;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652701753307539",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Sengupta:2002:QCM,
  author =       "Rimli Sengupta and Martin Tompa",
  title =        "Quality Control in Manufacturing Oligo Arrays: a
                 Combinatorial Design Approach",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "1",
  pages =        "1--22",
  month =        jan,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252833163",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252833163;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252833163",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Rajasekaran:2002:ECP,
  author =       "S. Rajasekaran and X. Jin and J. L. Spouge",
  title =        "The Efficient Computation of Position-Specific Match
                 Scores with the Fast {Fourier} Transform",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "1",
  pages =        "23--33",
  month =        jan,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252833172",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252833172;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252833172",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Sorenson:2002:PES,
  author =       "Jon M. Sorenson and Teresa Head-Gordon",
  title =        "Protein Engineering Study of Protein {L} by
                 Simulation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "1",
  pages =        "35--54",
  month =        jan,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252833181",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252833181;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252833181",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Kooperberg:2002:IBC,
  author =       "Charles Kooperberg and Thomas G. Fazzio and Jeffrey J.
                 Delrow and Toshio Tsukiyama",
  title =        "Improved Background Correction for Spotted {DNA}
                 Microarrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "1",
  pages =        "55--66",
  month =        jan,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252833190",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252833190;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252833190",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{deJong:2002:MSG,
  author =       "Hidde de Jong",
  title =        "Modeling and Simulation of Genetic Regulatory Systems:
                 a Literature Review",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "1",
  pages =        "67--103",
  month =        jan,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252833208",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252833208;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252833208",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Dougherty:2002:ICA,
  author =       "Edward R. Dougherty and Junior Barrera and Marcel Brun
                 and Seungchan Kim and Roberto M. Cesar and Yidong Chen
                 and Michael Bittner and Jeffrey M. Trent",
  title =        "Inference from Clustering with Application to
                 Gene-Expression Microarrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "1",
  pages =        "105--126",
  month =        jan,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252833217",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252833217;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252833217",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Kim:2002:SFS,
  author =       "Seungchan Kim and Edward R. Dougherty and Junior
                 Barrera and Yidong Chen and Michael L. Bittner and
                 Jeffrey M. Trent",
  title =        "Strong Feature Sets from Small Samples",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "1",
  pages =        "127--146",
  month =        jan,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252833226",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252833226;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252833226",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lengauer:2002:PSR,
  author =       "Thomas Lengauer",
  title =        "Preface: Special {RECOMB 2001} Issue",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "147--148",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935386",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/10665270252935386",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Amato:2002:UMP,
  author =       "Nancy M. Amato and Guang Song",
  title =        "Using Motion Planning to Study Protein Folding
                 Pathways",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "149--168",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935395",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935395;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935395",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Barash:2002:CSB,
  author =       "Yoseph Barash and Nir Friedman",
  title =        "Context-Specific {Bayesian} Clustering for Gene
                 Expression Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "169--191",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935403",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935403;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935403",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bilu:2002:AFP,
  author =       "Yonatan Bilu and Michal Linial",
  title =        "The Advantage of Functional Prediction Based on
                 Clustering of Yeast Genes and Its Correlation with
                 Non-Sequence Based Classifications",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "193--210",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935412",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935412;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935412",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Blanchette:2002:APF,
  author =       "Mathieu Blanchette and Benno Schwikowski and Martin
                 Tompa",
  title =        "Algorithms for Phylogenetic Footprinting",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "211--223",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935421",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935421;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935421",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Buhler:2002:FMU,
  author =       "Jeremy Buhler and Martin Tompa",
  title =        "Finding Motifs Using Random Projections",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "225--242",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935430",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935430;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935430",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bundschuh:2002:RSE,
  author =       "Ralf Bundschuh",
  title =        "Rapid Significance Estimation in Local Sequence
                 Alignment with Gaps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "243--260",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935449",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935449;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935449",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Cowen:2002:PBH,
  author =       "Lenore Cowen and Phil Bradley and Matthew Menke and
                 Jonathan King and Bonnie Berger",
  title =        "Predicting the Beta-Helix Fold from Protein Sequence
                 Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "261--276",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935458",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935458;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935458",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Csuros:2002:FRE,
  author =       "Mikl{\'o}s Csur{\"o}s",
  title =        "Fast Recovery of Evolutionary Trees with Thousands of
                 Nodes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "277--297",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935467",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935467;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935467",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Efrat:2002:GAA,
  author =       "Alon Efrat and Frank Hoffmann and Klaus Kriegel and
                 Christof Schultz and Carola Wenk",
  title =        "Geometric Algorithms for the Analysis of
                 {$2$D}-Electrophoresis Gels",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "299--315",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935476",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935476;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935476",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Filkov:2002:ATM,
  author =       "Vladimir Filkov and Steven Skiena and Jizu Zhi",
  title =        "Analysis Techniques for Microarray Time-Series Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "317--330",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935485",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935485;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935485",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Friedman:2002:SEA,
  author =       "Nir Friedman and Matan Ninio and Itsik Pe'er and Tal
                 Pupko",
  title =        "A Structural {EM} Algorithm for Phylogenetic
                 Inference",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "331--353",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935494",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935494;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935494",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Frieze:2002:OSH,
  author =       "Alan M. Frieze and Bjarni V. Halld{\'o}rsson",
  title =        "Optimal Sequencing by Hybridization in Rounds",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "355--369",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935502",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935502;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935502",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Jiang:2002:GED,
  author =       "Tao Jiang and Guohui Lin and Bin Ma and Kaizhong
                 Zhang",
  title =        "A General Edit Distance between {RNA} Structures",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "371--388",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935511",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935511;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935511",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Pachter:2002:AGP,
  author =       "Lior Pachter and Marina Alexandersson and Simon
                 Cawley",
  title =        "Applications of Generalized Pair Hidden {Markov}
                 Models to Alignment and Gene Finding Problems",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "389--399",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935520",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935520;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935520",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Pavlidis:2002:LGF,
  author =       "Paul Pavlidis and Jason Weston and Jinsong Cai and
                 William Stafford Noble",
  title =        "Learning Gene Functional Classifications from Multiple
                 Data Types",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "401--411",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935539",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935539;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935539",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Shamir:2002:LSS,
  author =       "Ron Shamir and Dekel Tsur",
  title =        "Large Scale Sequencing by Hybridization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "413--428",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935548",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935548;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935548",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Tang:2002:ZFG,
  author =       "Mengxiang Tang and Michael Waterman and Shibu
                 Yooseph",
  title =        "Zinc Finger Gene Clusters and Tandem Gene
                 Duplication",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "429--446",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935557",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935557;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935557",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Thijs:2002:GSM,
  author =       "Gert Thijs and Kathleen Marchal and Magali Lescot and
                 Stephane Rombauts and Bart {De Moor} and Pierre
                 Rouz{\'e} and Yves Moreau",
  title =        "A {Gibbs} Sampling Method to Detect Overrepresented
                 Motifs in the Upstream Regions of Coexpressed Genes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "2",
  pages =        "447--464",
  month =        apr,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270252935566",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:13 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270252935566;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270252935566",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Berloff:2002:SMC,
  author =       "Natalia Berloff and Markus Perola and Kenneth Lange",
  title =        "Spline Methods for the Comparison of Physical and
                 Genetic Maps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "3",
  pages =        "465--475",
  month =        jun,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760138565",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760138565;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760138565",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Shen:2002:SPA,
  author =       "Shi-Yi Shen and Jun Yang and Adam Yao and Pei-Ing
                 Hwang",
  title =        "Super Pairwise Alignment {(SPA)}: An Efficient
                 Approach to Global Alignment for Homologous Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "3",
  pages =        "477--486",
  month =        jun,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760138574",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760138574;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760138574",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Zhang:2002:AIC,
  author =       "Jian Zhang",
  title =        "Analysis of Information Content for Biological
                 Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "3",
  pages =        "487--503",
  month =        jun,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760138583",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760138583;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760138583",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Radmacher:2002:PCP,
  author =       "Michael D. Radmacher and Lisa M. McShane and Richard
                 Simon",
  title =        "A Paradigm for Class Prediction Using Gene Expression
                 Profiles",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "3",
  pages =        "505--511",
  month =        jun,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760138592",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760138592;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760138592",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Clark:2002:CAG,
  author =       "Terry Clark and Sanggyu Lee and L. Ridgway Scott and
                 San Ming Wang",
  title =        "Computational Analysis of Gene Identification with
                 {SAGE}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "3",
  pages =        "513--526",
  month =        jun,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760138600",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760138600;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760138600",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Sung:2002:CEP,
  author =       "Myong-Hee Sung and Yingdong Zhao and Roland Martin and
                 Richard Simon",
  title =        "{T}-Cell Epitope Prediction with Combinatorial Peptide
                 Libraries",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "3",
  pages =        "527--539",
  month =        jun,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760138619",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760138619;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760138619",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Nebel:2002:CPR,
  author =       "Markus E. Nebel",
  title =        "Combinatorial Properties of {RNA} Secondary
                 Structures",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "3",
  pages =        "541--573",
  month =        jun,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760138628",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760138628;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760138628",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bailey:2002:EES,
  author =       "Timothy L. Bailey and Michael Gribskov",
  title =        "Estimating and Evaluating the Statistics of Gapped
                 Local-Alignment Scores",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "3",
  pages =        "575--593",
  month =        jun,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760138637",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760138637;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760138637",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Anonymous:2002:Ca,
  author =       "Anonymous",
  title =        "Correction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "3",
  pages =        "594--595",
  month =        jun,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760138646",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/106652702760138646",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Althaus:2002:CAP,
  author =       "Ernst Althaus and Oliver Kohlbacher and Hans-Peter
                 Lenhof and Peter M{\"u}ller",
  title =        "A Combinatorial Approach to Protein Docking with
                 Flexible Side Chains",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "4",
  pages =        "597--612",
  month =        aug,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760277336",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:18 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760277336;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760277336",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Yanikoglu:2002:MEC,
  author =       "Berrin Yanikoglu and Burak Erman",
  title =        "Minimum Energy Configurations of the $2$-Dimensional
                 {HP-Model} of Proteins by Self-Organizing Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "4",
  pages =        "613--620",
  month =        aug,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760277345",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:18 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760277345;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760277345",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Horng:2002:RSD,
  author =       "Jorng-Tzong Horng and Hsien-Da Huang and Ming-Hui Jin
                 and Li-Cheng Wu and Shir-Ly Huang",
  title =        "The Repetitive Sequence Database and Mining Putative
                 Regulatory Elements in Gene Promoter Regions",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "4",
  pages =        "621--640",
  month =        aug,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760277354",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:18 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760277354;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760277354",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Mercatanti:2002:MPA,
  author =       "Alberto Mercatanti and Giuseppe Rainaldi and Laura
                 Mariani and Roberto Marangoni and Lorenzo Citti",
  title =        "A Method for Prediction of Accessible Sites on an
                 {mRNA} Sequence for Target Selection of Hammerhead
                 Ribozymes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "4",
  pages =        "641--653",
  month =        aug,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760277363",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:18 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760277363;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760277363",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Coombes:2002:IQS,
  author =       "Kevin R. Coombes and W. Edward Highsmith and Tammy A.
                 Krogmann and Keith A. Baggerly and David N. Stivers and
                 Lynne V. Abruzzo",
  title =        "Identifying and Quantifying Sources of Variation in
                 Microarray Data Using High-Density {cDNA} Membrane
                 Arrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "4",
  pages =        "655--669",
  month =        aug,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760277372",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:18 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760277372;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760277372",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Broet:2002:BHM,
  author =       "Philippe Bro{\"e}t and Sylvia Richardson and
                 Fran{\c{c}}ois Radvanyi",
  title =        "{Bayesian} Hierarchical Model for Identifying Changes
                 in Gene Expression from Microarray Experiments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "4",
  pages =        "671--683",
  month =        aug,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760277381",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:18 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702760277381;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702760277381",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Anonymous:2002:Cb,
  author =       "Anonymous",
  title =        "Correction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "4",
  pages =        "685--685",
  month =        aug,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702760277390",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:18 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/106652702760277390",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Desper:2002:FAP,
  author =       "Richard Desper and Olivier Gascuel",
  title =        "Fast and Accurate Phylogeny Reconstruction Algorithms
                 Based on the Minimum-Evolution Principle",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "5",
  pages =        "687--705",
  month =        oct,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702761034136",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702761034136;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702761034136",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Narasimhan:2002:MPS,
  author =       "Giri Narasimhan and Changsong Bu and Yuan Gao and
                 Xuning Wang and Ning Xu and Kalai Mathee",
  title =        "Mining Protein Sequences for Motifs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "5",
  pages =        "707--720",
  month =        oct,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702761034145",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702761034145;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702761034145",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Aspnes:2002:CTP,
  author =       "James Aspnes and Julia Hartling and Ming-Yang Kao and
                 Junhyong Kim and Gauri Shah",
  title =        "A Combinatorial Toolbox for Protein Sequence Design
                 and Landscape Analysis in the Grand Canonical Model",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "5",
  pages =        "721--741",
  month =        oct,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702761034154",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702761034154;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702761034154",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Meidanis:2002:LBR,
  author =       "Jo{\~a}o Meidanis and Maria M. T. Walter and Zanoni
                 Dias",
  title =        "A Lower Bound on the Reversal and Transposition
                 Diameter",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "5",
  pages =        "743--745",
  month =        oct,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702761034163",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702761034163;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702761034163",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Spang:2002:NAR,
  author =       "Rainer Spang and Marc Rehmsmeier and Jens Stoye",
  title =        "A Novel Approach to Remote Homology Detection: Jumping
                 Alignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "5",
  pages =        "747--760",
  month =        oct,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652702761034172",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652702761034172;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652702761034172",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Robin:2002:OPS,
  author =       "S. Robin and J.-J. Daudin and H. Richard and M.-F.
                 Sagot and S. Schbath",
  title =        "Occurrence Probability of Structured Motifs in Random
                 Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "6",
  pages =        "761--773",
  month =        dec,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270260518254",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270260518254;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270260518254",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Eskin:2002:USM,
  author =       "Eleazar Eskin and William Stafford Noble and Yoram
                 Singer",
  title =        "Using Substitution Matrices to Estimate Probability
                 Distributions for Biological Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "6",
  pages =        "775--791",
  month =        dec,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270260518263",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270260518263;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270260518263",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ljungberg:2002:EAQ,
  author =       "Kajsa Ljungberg and Sverker Holmgren and {\"O}rjan
                 Carlborg",
  title =        "Efficient Algorithms for Quantitative Trait Loci
                 Mapping Problems",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "6",
  pages =        "793--804",
  month =        dec,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270260518272",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270260518272;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270260518272",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{York:2002:BEN,
  author =       "Thomas L. York and Richard Durrett and Rasmus
                 Nielsen",
  title =        "{Bayesian} Estimation of the Number of Inversions in
                 the History of Two Chromosomes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "6",
  pages =        "805--818",
  month =        dec,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270260518281",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270260518281;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270260518281",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Raje:2002:DFR,
  author =       "D. V. Raje and H. J. Purohit and R. N. Singh",
  title =        "Distinguishing Features of 16S {rDNA} Gene for Five
                 Dominating Bacterial Genus Observed in Bioremediation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "6",
  pages =        "819--829",
  month =        dec,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270260518290",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270260518290;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270260518290",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Piau:2002:MRS,
  author =       "Didier Piau",
  title =        "Mutation--Replication Statistics of Polymerase Chain
                 Reactions",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "6",
  pages =        "831--847",
  month =        dec,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270260518308",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270260518308;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270260518308",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Doniger:2002:PCP,
  author =       "Scott Doniger and Thomas Hofmann and Joanne Yeh",
  title =        "Predicting {CNS} Permeability of Drug Molecules:
                 Comparison of Neural Network and Support Vector Machine
                 Algorithms",
  journal =      j-J-COMPUT-BIOL,
  volume =       "9",
  number =       "6",
  pages =        "849--864",
  month =        dec,
  year =         "2002",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270260518317",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/10665270260518317;
                 https://www.liebertpub.com/doi/pdf/10.1089/10665270260518317",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lu:2003:SAN,
  author =       "Bingwen Lu and Ting Chen",
  title =        "A Suboptimal Algorithm for {{\em {De} Novo\/}} Peptide
                 Sequencing via Tandem Mass Spectrometry",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "1",
  pages =        "1--12",
  month =        feb,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703763255633",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703763255633;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703763255633",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Schwartz:2003:RIH,
  author =       "Russell Schwartz and Bjarni V. Halld{\'o}rsson and
                 Vineet Bafna and Andrew G. Clark and Sorin Istrail",
  title =        "Robustness of Inference of Haplotype Block Structure",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "1",
  pages =        "13--19",
  month =        feb,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703763255642",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703763255642;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703763255642",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Liu:2003:CCA,
  author =       "Agatha H. Liu and Andrea Califano",
  title =        "{CASTOR}: Clustering Algorithm for Sequence
                 Taxonomical Organization and Relationships",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "1",
  pages =        "21--45",
  month =        feb,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703763255651",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703763255651;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703763255651",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Li:2003:IPS,
  author =       "Xueliang Li and Zimao Li and Lusheng Wang",
  title =        "The Inverse Problems for Some Topological Indices in
                 Combinatorial Chemistry",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "1",
  pages =        "47--55",
  month =        feb,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703763255660",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703763255660;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703763255660",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Oliveira:2003:CMI,
  author =       "Joseph S. Oliveira and Colin G. Bailey and Janet B.
                 Jones-Oliveira and David A. Dixon and Dean W. Gull and
                 Mary L. Chandler",
  title =        "A Computational Model for the Identification of
                 Biochemical Pathways in the {Krebs} Cycle",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "1",
  pages =        "57--82",
  month =        feb,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703763255679",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703763255679;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703763255679",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Chattopadhyay:2003:TCP,
  author =       "Sujay Chattopadhyay and Jayprokas Chakrabarti",
  title =        "Temporal Changes in Phosphoglycerate Kinase Coding
                 Sequences: a Quantitative Measure",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "1",
  pages =        "83--93",
  month =        feb,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703763255688",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703763255688;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703763255688",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Aastrand:2003:CNO,
  author =       "Magnus {\AA}strand",
  title =        "Contrast Normalization of Oligonucleotide Arrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "1",
  pages =        "95--102",
  month =        feb,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703763255697",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703763255697;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703763255697",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Myers:2003:TDF,
  author =       "Gene Myers and Richard Durbin",
  title =        "A Table-Driven, Full-Sensitivity Similarity Search
                 Algorithm",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "2",
  pages =        "103--117",
  month =        apr,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703321825919",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703321825919;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703321825919",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Mukherjee:2003:EDS,
  author =       "Sayan Mukherjee and Pablo Tamayo and Simon Rogers and
                 Ryan Rifkin and Anna Engle and Colin Campbell and Todd
                 R. Golub and Jill P. Mesirov",
  title =        "Estimating Dataset Size Requirements for Classifying
                 {DNA} Microarray Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "2",
  pages =        "119--142",
  month =        apr,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703321825928",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703321825928;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703321825928",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lai:2003:MPM,
  author =       "Yinglei Lai and Deepali Shinde and Norman Arnheim and
                 Fengzhu Sun",
  title =        "The Mutation Process of Microsatellites During the
                 Polymerase Chain Reaction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "2",
  pages =        "143--155",
  month =        apr,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703321825937",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703321825937;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703321825937",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Yang:2003:SMA,
  author =       "Yaning Yang and Josephine Hoh and Clemens Broger and
                 Martin Neeb and Joanne Edington and Klaus Lindpaintner
                 and Jurg Ott",
  title =        "Statistical Methods for Analyzing Microarray Feature
                 Data with Replications",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "2",
  pages =        "157--169",
  month =        apr,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703321825946",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703321825946;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703321825946",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wan:2003:DSR,
  author =       "Honghui Wan and Lugang Li and Scott Federhen and John
                 C. Wootton",
  title =        "Discovering Simple Regions in Biological Sequences
                 Associated with Scoring Schemes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "2",
  pages =        "171--185",
  month =        apr,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703321825955",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703321825955;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703321825955",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Eskin:2003:PFC,
  author =       "Eleazar Eskin and William Stafford Noble and Yoram
                 Singer",
  title =        "Protein Family Classification Using Sparse {Markov}
                 Transducers",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "2",
  pages =        "187--213",
  month =        apr,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703321825964",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703321825964;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703321825964",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Penchovsky:2003:DLD,
  author =       "Robert Penchovsky and J{\"o}rg Ackermann",
  title =        "{DNA} Library Design for Molecular Computation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "2",
  pages =        "215--229",
  month =        apr,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703321825973",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703321825973;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703321825973",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Hwang:2003:ETP,
  author =       "F. K. Hwang and Y. C. Liu",
  title =        "Error-Tolerant Pooling Designs with Inhibitors",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "2",
  pages =        "231--236",
  month =        apr,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703321825982",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703321825982;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703321825982",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Myers:2003:SRI,
  author =       "Eugene W. Myers",
  title =        "Special {RECOMB 2002} Issue",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "237--237",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360687995",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Amato:2003:UMP,
  author =       "Nancy M. Amato and Ken A. Dill and Guang Song",
  title =        "Using Motion Planning to Map Protein Folding
                 Landscapes and Analyze Folding Kinetics of Known Native
                 Structures",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "239--255",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688002",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Apaydin:2003:SRS,
  author =       "Mehmet Serkan Apaydin and Douglas L. Brutlag and
                 Carlos Guestrin and David Hsu and Jean-Claude Latombe
                 and Chris Varma",
  title =        "Stochastic Roadmap Simulation: An Efficient
                 Representation and Algorithm for Analyzing Molecular
                 Motion",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "257--281",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688011",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Apostolico:2003:MSL,
  author =       "Alberto Apostolico and Mary Ellen Bock and Stefano
                 Lonardi",
  title =        "Monotony of Surprise and Large-Scale Quest for Unusual
                 Words",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "283--311",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688020",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Arndt:2003:DSE,
  author =       "Peter F. Arndt and Christopher B. Burge and Terence
                 Hwa",
  title =        "{DNA} Sequence Evolution with Neighbor-Dependent
                 Mutation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "313--322",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688039",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bafna:2003:HPP,
  author =       "Vineet Bafna and Dan Gusfield and Giuseppe Lancia and
                 Shibu Yooseph",
  title =        "Haplotyping as Perfect Phylogeny: a Direct Approach",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "323--340",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688048",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Bar-Joseph:2003:CRT,
  author =       "Ziv Bar-Joseph and Georg K. Gerber and David K.
                 Gifford and Tommi S. Jaakkola and Itamar Simon",
  title =        "Continuous Representations of Time-Series Gene
                 Expression Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "341--356",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688057",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Berard:2003:CM,
  author =       "S{\`e}verine B{\'e}rard and Eric Rivals",
  title =        "Comparison of Minisatellites",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "357--372",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688066",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ben-Dor:2003:DLS,
  author =       "Amir Ben-Dor and Benny Chor and Richard Karp and Zohar
                 Yakhini",
  title =        "Discovering Local Structure in Gene Expression Data:
                 The Order-Preserving Submatrix Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "373--384",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688075",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ben-Dor:2003:RSP,
  author =       "Amir Ben-Dor and Richard M. Karp and Benno Schwikowski
                 and Ron Shamir",
  title =        "The Restriction Scaffold Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "385--398",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688084",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Buhler:2003:PSI,
  author =       "Jeremy Buhler",
  title =        "Provably Sensitive Indexing Strategies for Biosequence
                 Similarity Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "399--417",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688093",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Cohen:2003:NSA,
  author =       "Barry Cohen and Steven Skiena",
  title =        "Natural Selection and Algorithmic Design of {mRNA}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "419--432",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688101",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Dror:2003:BET,
  author =       "Ron O. Dror and Jonathan G. Murnick and Nicola J.
                 Rinaldi and Voichita D. Marinescu and Ryan M. Rifkin
                 and Richard A. Young",
  title =        "{Bayesian} Estimation of Transcript Levels Using a
                 General Model of Array Measurement Noise",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "433--452",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688110",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Durand:2003:TGC,
  author =       "Dannie Durand and David Sankoff",
  title =        "Tests for Gene Clustering",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "453--482",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688129",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Halperin:2003:HLT,
  author =       "Eran Halperin and Shay Halperin and Tzvika Hartman and
                 Ron Shamir",
  title =        "Handling Long Targets and Errors in Sequencing by
                 Hybridization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "483--497",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688138",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Heath:2003:SHC,
  author =       "Samuel A. Heath and Franco P. Preparata and Joel
                 Young",
  title =        "Sequencing by Hybridization by Cooperating Direct and
                 Reverse Spectra",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "499--508",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688147",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lam:2003:PAS,
  author =       "Fumei Lam and Marina Alexandersson and Lior Pachter",
  title =        "Picking Alignments from ({Steiner}) Trees",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "509--520",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688156",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Langmead:2003:PIR,
  author =       "Christopher James Langmead and Anthony K. Yan and C.
                 Robertson McClung and Bruce Randall Donald",
  title =        "Phase-Independent Rhythmic Analysis of Genome-Wide
                 Expression Patterns",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "521--536",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688165",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Li:2003:SIM,
  author =       "Jia Li and Webb Miller",
  title =        "Significance of Interspecies Matches when Evolutionary
                 Rate Varies",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "537--554",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688174",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Mumey:2003:NMM,
  author =       "Brendan M. Mumey and Brian W. Bailey and Bonnie
                 Kirkpatrick and Algirdas J. Jesaitis and Thomas Angel
                 and Edward A. Dratz",
  title =        "A New Method for Mapping Discontinuous Antibody
                 Epitopes to Reveal Structural Features of Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "555--567",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688183",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ott:2003:SAA,
  author =       "Jurg Ott and Josephine Hoh",
  title =        "Set Association Analysis of {SNP} Case-Control and
                 Microarray Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "569--574",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688192",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Siepel:2003:AES,
  author =       "Adam C. Siepel",
  title =        "An Algorithm to Enumerate Sorting Reversals for Signed
                 Permutations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "575--597",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688200",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Sinha:2003:DM,
  author =       "Saurabh Sinha",
  title =        "Discriminative Motifs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "599--615",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688219",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Teodoro:2003:UPF,
  author =       "Miguel L. Teodoro and George N. {Phillips, Jr.} and
                 Lydia E. Kavraki",
  title =        "Understanding Protein Flexibility through
                 Dimensionality Reduction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "617--634",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688228",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wildenberg:2003:DSV,
  author =       "Andy Wildenberg and Steven Skiena and Pavel Sumazin",
  title =        "Deconvolving Sequence Variation in Mixed {DNA}
                 Populations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "635--652",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688237",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Zien:2003:MHM,
  author =       "Alexander Zien and Juliane Fluck and Ralf Zimmer and
                 Thomas Lengauer",
  title =        "Microarrays: How Many Do You Need?",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "3--4",
  pages =        "653--667",
  month =        jun,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/10665270360688246",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Mossel:2003:IRA,
  author =       "Elchanan Mossel",
  title =        "On the Impossibility of Reconstructing Ancestral Data
                 and Phylogenies",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "669--676",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539015",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539015;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539015",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Chung:2003:DMB,
  author =       "Fan Chung and Linyuan Lu and T. Gregory Dewey and
                 David J. Galas",
  title =        "Duplication Models for Biological Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "677--687",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539024",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539024;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539024",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Michailidis:2003:ARB,
  author =       "George Michailidis and Kerby Shedden",
  title =        "The Application of Rule-Based Methods to Class
                 Prediction Problems in Genomics",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "689--698",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539033",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539033;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539033",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wang:2003:RTI,
  author =       "Yonghong Wang and Hongyu Ou and Fengbiao Guo",
  title =        "Recognition of Translation Initiation Sites of
                 Eukaryotic Genes Based on an {EM} Algorithm",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "699--708",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539042",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539042;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539042",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lu:2003:TCO,
  author =       "Wei-Fu Lu and Wen-Lian Hsu",
  title =        "A Test for the Consecutive Ones Property on Noisy Data
                 --- Application to Physical Mapping and Sequence
                 Assembly",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "709--735",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539051",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539051;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539051",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Jonsson:2003:AML,
  author =       "Henrik J{\"o}nsson and Bo S{\"o}derberg",
  title =        "An Approximate Maximum Likelihood Approach, Applied to
                 Phylogenetic Trees",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "737--749",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539060",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539060;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539060",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Faller:2003:NDM,
  author =       "D. Faller and H. U. Voss and J. Timmer and U. Hobohm",
  title =        "Normalization of {DNA-Microarray} Data by Nonlinear
                 Correlation Maximization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "751--762",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539079",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539079;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539079",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Piccolboni:2003:CFC,
  author =       "Antonio Piccolboni and Dan Gusfield",
  title =        "On the Complexity of Fundamental Computational
                 Problems in Pedigree Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "763--773",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539088",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539088;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539088",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Heath:2003:SSS,
  author =       "Lenwood S. Heath and John Paul C. Vergara",
  title =        "Sorting by Short Swaps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "775--789",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539097",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539097;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539097",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Pisanti:2003:PMP,
  author =       "N. Pisanti and R. Marangoni and P. Ferragina and A.
                 Frangioni and A. Savona and C. Pisanelli and F.
                 Luccio",
  title =        "{PaTre}: a Method for Paralogy Trees Construction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "5",
  pages =        "791--802",
  month =        oct,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322539105",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:31 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322539105;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322539105",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Zhang:2003:EPA,
  author =       "Yu Zhang and Michael S. Waterman",
  title =        "An {Eulerian} Path Approach to Global Multiple
                 Alignment for {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "803--819",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756096",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756096;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756096",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Shatkay:2003:MBL,
  author =       "Hagit Shatkay and Ronen Feldman",
  title =        "Mining the Biomedical Literature in the Genomic Era:
                 An Overview",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "821--855",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756104",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756104;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756104",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Liao:2003:CPS,
  author =       "Li Liao and William Stafford Noble",
  title =        "Combining Pairwise Sequence Similarity and Support
                 Vector Machines for Detecting Remote Protein
                 Evolutionary and Structural Relationships",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "857--868",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756113",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756113;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756113",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lunter:2003:EAS,
  author =       "G. A. Lunter and I. Mikl{\'o}s and Y. S. Song and J.
                 Hein",
  title =        "An Efficient Algorithm for Statistical Multiple
                 Alignment on Arbitrary Phylogenetic Trees",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "869--889",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756122",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756122;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756122",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Kerr:2003:LMM,
  author =       "M. Kathleen Kerr",
  title =        "Linear Models for Microarray Data Analysis: Hidden
                 Similarities and Differences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "891--901",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756131",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756131;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756131",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Navarro:2003:FSC,
  author =       "Gonzalo Navarro and Mathieu Raffinot",
  title =        "Fast and Simple Character Classes and Bounded Gaps
                 Pattern Matching, with Applications to Protein
                 Searching",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "903--923",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756140",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756140;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756140",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Lilien:2003:PDC,
  author =       "Ryan H. Lilien and Hany Farid and Bruce R. Donald",
  title =        "Probabilistic Disease Classification of
                 Expression-Dependent Proteomic Data from Mass
                 Spectrometry of Human Serum",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "925--946",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756159",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756159;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756159",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Deng:2003:PPF,
  author =       "Minghua Deng and Kui Zhang and Shipra Mehta and Ting
                 Chen and Fengzhu Sun",
  title =        "Prediction of Protein Function Using Protein--Protein
                 Interaction Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "947--960",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756168",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756168;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756168",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Segal:2003:RAM,
  author =       "Mark R. Segal and Kam D. Dahlquist and Bruce R.
                 Conklin",
  title =        "Regression Approaches for Microarray Data Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "961--980",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756177",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756177;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756177",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Ieong:2003:PRS,
  author =       "Samuel Ieong and Ming-Yang Kao and Tak-Wah Lam and
                 Wing-Kin Sung and Siu-Ming Yiu",
  title =        "Predicting {RNA} Secondary Structures with Arbitrary
                 Pseudoknots by Maximizing the Number of Stacking
                 Pairs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "981--995",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756186",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756186;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756186",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Veerassamy:2003:TPM,
  author =       "Shalini Veerassamy and Andrew Smith and Elisabeth R.
                 M. Tillier",
  title =        "A Transition Probability Model for Amino Acid
                 Substitutions from Blocks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "10",
  number =       "6",
  pages =        "997--1010",
  month =        dec,
  year =         "2003",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652703322756195",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:34 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652703322756195;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652703322756195",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Huang:2004:DLS,
  author =       "Haiyan Huang and Ming-Chih J. Kao and Xianghong Zhou
                 and Jun S. Liu and Wing H. Wong",
  title =        "Determination of Local Statistical Significance of
                 Patterns in {Markov} Sequences with Application to
                 Promoter Element Identification",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "1--14",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416858",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416858;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416858",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Apostolico:2004:IPM,
  author =       "Alberto Apostolico and Laxmi Parida",
  title =        "Incremental Paradigms of Motif Discovery",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "15--25",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416867",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416867;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416867",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Caprara:2004:OPS,
  author =       "Alberto Caprara and Robert Carr and Sorin Istrail and
                 Giuseppe Lancia and Brian Walenz",
  title =        "1001 Optimal {PDB} Structure Alignments: Integer
                 Programming Methods for Finding the Maximum Contact Map
                 Overlap",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "27--52",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416876",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416876;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416876",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wagner:2004:RPL,
  author =       "Andreas Wagner",
  title =        "Reconstructing Pathways in Large Genetic Networks from
                 Genetic Perturbations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "53--60",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416885",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416885;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416885",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Spiro:2004:LAM,
  author =       "Peter A. Spiro and Natasa Macura",
  title =        "A Local Alignment Metric for Accelerating Biosequence
                 Database Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "61--82",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416894",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416894;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416894",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Shatsky:2004:FAF,
  author =       "Maxim Shatsky and Ruth Nussinov and Haim J. Wolfson",
  title =        "{FlexProt}: Alignment of Flexible Protein Structures
                 Without a Predefinition of Hinge Regions",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "83--106",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416902",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416902;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416902",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Cheung:2004:URS,
  author =       "Leo Wang-Kit Cheung",
  title =        "Use of Runs Statistics for Pattern Recognition in
                 Genomic {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "107--124",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416911",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416911;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416911",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Sung:2004:GCE,
  author =       "Myong-Hee Sung and Richard Simon",
  title =        "Genomewide Conserved Epitope Profiles of {HIV-1}
                 Predicted by Biophysical Properties of {MHC} Binding
                 Peptides",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "125--145",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416920",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416920;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416920",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Zhou:2004:GCB,
  author =       "Xiaobo Zhou and Xiaodong Wang and Edward R. Dougherty
                 and Daniel Russ and Edward Suh",
  title =        "Gene Clustering Based on Clusterwide Mutual
                 Information",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "147--161",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416939",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416939;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416939",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Adamiak:2004:AAN,
  author =       "R. W. Adamiak and J. Blazewicz and P. Formanowicz and
                 Z. Gdaniec and M. Kasprzak and M. Popenda and M.
                 Szachniuk",
  title =        "An Algorithm for an Automatic {NOE} Pathways Analysis
                 of {$2$D} {NMR} Spectra of {RNA} Duplexes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "163--179",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416948",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416948;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416948",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Wistrand:2004:TPP,
  author =       "Markus Wistrand and Erik L. L. Sonnhammer",
  title =        "Transition Priors for Protein Hidden {Markov} Models:
                 An Empirical Study towards Maximum Discrimination",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "181--193",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416957",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416957;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416957",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Makarenkov:2004:PTR,
  author =       "Vladimir Makarenkov and Pierre Legendre",
  title =        "From a Phylogenetic Tree to a Reticulated Network",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "1",
  pages =        "195--212",
  month =        jan,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/106652704773416966",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:36 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/106652704773416966;
                 https://www.liebertpub.com/doi/pdf/10.1089/106652704773416966",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 July 2004",
}

@Article{Miller:2004:SRI,
  author =       "Webb Miller and Martin Vingron",
  title =        "Special {RECOMB 2003} Issue",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "213--213",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410427",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Li:2004:EVD,
  author =       "Wentian Li and Fengzhu Sun and Ivo Grosse",
  title =        "Extreme Value Distribution Based Gene Selection
                 Criteria for Discriminant Microarray Data Analysis
                 Using Logistic Regression",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "215--226",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410445",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Krishnapuram:2004:JCF,
  author =       "Balaji Krishnapuram and Lawrence Carin and Alexander
                 J. Hartemink",
  title =        "Joint Classifier and Feature Optimization for
                 Comprehensive Cancer Diagnosis Using Gene Expression
                 Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "227--242",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410463",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Yeang:2004:PNM,
  author =       "Chen-Hsiang Yeang and Trey Ideker and Tommi Jaakkola",
  title =        "Physical Network Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "243--262",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410382",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Fishelson:2004:OEG,
  author =       "Maayan Fishelson and Dan Geiger",
  title =        "Optimizing Exact Genetic Linkage Computations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "263--275",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410409",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Langmead:2004:PTN,
  author =       "Christopher James Langmead and Anthony Yan and Ryan
                 Lilien and Lincong Wang and Bruce Randall Donald",
  title =        "A Polynomial-Time Nuclear Vector Replacement Algorithm
                 for Automated {NMR} Resonance Assignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "277--298",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410436",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Lotan:2004:APS,
  author =       "Itay Lotan and Fabian Schwarzer",
  title =        "Approximation of Protein Structure for Fast Similarity
                 Measures",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "299--317",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410355",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Kellis:2004:MCG,
  author =       "Manolis Kellis and Nick Patterson and Bruce Birren and
                 Bonnie Berger and Eric S. Lander",
  title =        "Methods in Comparative Genomics: Genome
                 Correspondence, Gene Identification and Regulatory
                 Motif Discovery",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "319--355",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410319",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Tanay:2004:MMI,
  author =       "Amos Tanay and Ron Shamir",
  title =        "Multilevel Modeling and Inference of Transcription
                 Regulation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "357--375",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410364",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Yeo:2004:MEM,
  author =       "Gene Yeo and Christopher B. Burge",
  title =        "Maximum Entropy Modeling of Short Sequence Motifs with
                 Applications to {RNA} Splicing Signals",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "377--394",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410418",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Roskin:2004:SFD,
  author =       "Krishna M. Roskin and Mark Diekhans and David
                 Haussler",
  title =        "Score Functions for Determining Regional Conservation
                 in Two-Species Local Alignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "395--411",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410328",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Siepel:2004:CPH,
  author =       "Adam Siepel and David Haussler",
  title =        "Combining Phylogenetic and Hidden {Markov} Models in
                 Biosequence Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "413--428",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410472",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Kahng:2004:SHD,
  author =       "Andrew B. Kahng and Ion I. M{\u{a}}ndoiu and Pavel A.
                 Pevzner and Sherief Reda and Alexander Z. Zelikovsky",
  title =        "Scalable Heuristics for Design of {DNA} Probe Arrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "429--447",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410391",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Akutsu:2004:EEM,
  author =       "Tatsuya Akutsu",
  title =        "Efficient Extraction of Mapping Rules of Atoms from
                 Enzymatic Reaction Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "449--462",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410337",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Deng:2004:IPM,
  author =       "Minghua Deng and Ting Chen and Fengzhu Sun",
  title =        "An Integrated Probabilistic Model for Functional
                 Prediction of Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "463--475",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410346",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Ben-Dor:2004:TOM,
  author =       "Amir Ben-Dor and Tzvika Hartman and Richard M. Karp
                 and Benno Schwikowski and Roded Sharan and Zohar
                 Yakhini",
  title =        "Towards Optimally Multiplexed Applications of
                 Universal Arrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "476--492",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410373",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Greenspan:2004:MBI,
  author =       "Gideon Greenspan and Dan Geiger",
  title =        "Model-Based Inference of Haplotype Block Variation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "493--504",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410300",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Li:2004:HRS,
  author =       "Lei M. Li and Jong Hyun Kim and Michael S. Waterman",
  title =        "Haplotype Reconstruction from {SNP} Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "2--3",
  pages =        "505--516",
  month =        mar,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/1066527041410454",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:38 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "28 July 2004",
}

@Article{Benham:2004:ASI,
  author =       "Craig J. Benham and Chengpeng Bi",
  title =        "The Analysis of Stress-Induced Duplex Destabilization
                 in Long Genomic {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "519--543",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.519",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.519;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.519",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Janes:2004:CSR,
  author =       "Kevin A. Janes and Jason R. Kelly and Suzanne Gaudet
                 and John G. Albeck and Peter K. Sorger and Douglas A.
                 Lauffenburger",
  title =        "Cue-Signal-Response Analysis of {TNF-Induced}
                 Apoptosis by Partial Least Squares Regression of
                 Dynamic Multivariate Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "544--561",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.544",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.544;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.544",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Wu:2004:MPM,
  author =       "Rongling Wu and Chang-Xing Ma and George Casella",
  title =        "A Mixed Polyploid Model for Linkage Analysis in
                 Outcrossing Tetraploids Using a Pseudo-Test Backcross
                 Design",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "562--580",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.562",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.562;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.562",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Helman:2004:BNC,
  author =       "Paul Helman and Robert Veroff and Susan R. Atlas and
                 Cheryl Willman",
  title =        "A {Bayesian} Network Classification Methodology for
                 Gene Expression Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "581--615",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.581",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.581;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.581",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Booth:2004:ESA,
  author =       "Hilary S. Booth and John H. Maindonald and Susan R.
                 Wilson and Jill E. Gready",
  title =        "An Efficient {$Z$}-Score Algorithm for Assessing
                 Sequence Alignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "616--625",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.616",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.616;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.616",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Levy:2004:CDD,
  author =       "Dan Levy and Mariel Vazquez and Michael Cornforth and
                 Bradford Loucas and Rainer K. Sachs and Javier
                 Arsuaga",
  title =        "Comparing {DNA} Damage-Processing Pathways by Computer
                 Analysis of Chromosome Painting Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "626--641",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.626",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.626;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.626",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Ku:2004:CLL,
  author =       "Jason Ku and Xiao-Jiang Feng and Herschel Rabitz",
  title =        "Closed-Loop Learning Control of Bio-Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "642--659",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.642",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.642;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.642",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Giurcarneanu:2004:FIG,
  author =       "Ciprian Doru Giurc{\u{a}}rneanu and Ioan
                 T{\u{a}}bu{\c{s}} and Jaakko Astola and Juha Ollila and
                 Mauno Vihinen",
  title =        "Fast Iterative Gene Clustering Based on Information
                 Theoretic Criteria for Selecting the Cluster
                 Structure",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "660--682",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.660",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.660;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.660",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Zhihua:2004:TQP,
  author =       "Lin Zhihua and Wu Yuzhang and Zhu Bo and Ni Bing and
                 Wang Li",
  title =        "Toward the Quantitative Prediction of {T}-Cell
                 Epitopes: {QSAR} Studies on Peptides Having Affinity
                 with the Class {I} {MHC} Molecular {HLA-A*0201}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "683--694",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.683",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.683;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.683",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Bergemann:2004:SDA,
  author =       "T. L. Bergemann and R. J. Laws and F. Quiaoit and L.
                 P. Zhao",
  title =        "A Statistically Driven Approach for Image Segmentation
                 and Signal Extraction in {cDNA} Microarrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "695--713",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.695",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.695;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.695",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Wang:2004:SSI,
  author =       "Dr. Sue-Jane Wang and James J. Chen",
  title =        "Sample Size for Identifying Differentially Expressed
                 Genes in Microarray Experiments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "714--726",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.714",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.714;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.714",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Galtier:2004:MMM,
  author =       "N. Galtier and A. Jean-Marie",
  title =        "{Markov}-Modulated {Markov} Chains and the Covarion
                 Process of Molecular Evolution",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "727--733",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.727",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.727;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.727",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Roberts:2004:PSA,
  author =       "Michael Roberts and Brian R. Hunt and James A. Yorke
                 and Randall A. Bolanos and Arthur L. Delcher",
  title =        "A Preprocessor for Shotgun Assembly of Large Genomes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "734--752",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.734",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.734;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.734",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Preparata:2004:DSH,
  author =       "Franco P. Preparata and John S. Oliver",
  title =        "{DNA} Sequencing by Hybridization Using
                 Semi-Degenerate Bases",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "753--765",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.753",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.753;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.753",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Berman:2004:FOG,
  author =       "Piotr Berman and Paul Bertone and Bhaskar Dasgupta and
                 Mark Gerstein and Ming-Yang Kao and Michael Snyder",
  title =        "Fast Optimal Genome Tiling with Applications to
                 Microarray Design and Homology Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "4",
  pages =        "766--785",
  month =        aug,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.766",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:41 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.766;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.766",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Jia:2004:NSF,
  author =       "Yuting Jia and T. Gregory Dewey and Ilya N. Shindyalov
                 and Philip E. Bourne",
  title =        "A New Scoring Function and Associated Statistical
                 Significance for Structure Alignment by {CE}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "787--799",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.787",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.787;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.787",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Shatkay:2004:TEA,
  author =       "Hagit Shatkay and Jason Miller and Clark Mobarry and
                 Michael Flanigan and Shibu Yooseph and Granger Sutton",
  title =        "{ThurGood}: Evaluating Assembly-to-Assembly Mapping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "800--811",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.800",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.800;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.800",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Oliveira:2004:HTA,
  author =       "Joseph S. Oliveira and Janet B. Jones-Oliveira and
                 David A. Dixon and Colin G. Bailey and Dean W. Gull",
  title =        "Hyperdigraph-Theoretic Analysis of the {EGFR}
                 Signaling Network: Initial Steps Leading to {GTP:Ras}
                 Complex Formation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "812--842",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.812",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.812;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.812",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Heger:2004:ADV,
  author =       "Andreas Heger and Michael Lappe and Liisa Holm",
  title =        "Accurate Detection of Very Sparse Sequence Motifs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "843--857",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.843",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.843;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.843",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Bafna:2004:NEC,
  author =       "Vineet Bafna and Dan Gusfield and Sridhar Hannenhalli
                 and Shibu Yooseph",
  title =        "A Note on Efficient Computation of Haplotypes via
                 Perfect Phylogeny",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "858--866",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.858",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.858;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.858",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Bejerano:2004:EEV,
  author =       "Gill Bejerano and Nir Friedman and Naftali Tishby",
  title =        "Efficient Exact $p$-Value Computation for Small
                 Sample, Sparse, and Surprising Categorical Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "867--886",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.867",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.867;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.867",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Figueroa:2004:CBF,
  author =       "Andres Figueroa and James Borneman and Tao Jiang",
  title =        "Clustering Binary Fingerprint Vectors with Missing
                 Values for {DNA} Array Data Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "887--901",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.887",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.887;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.887",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Lotan:2004:ADS,
  author =       "Itay Lotan and Fabian Schwarzer and Dan Halperin and
                 Jean-Claude Latombe",
  title =        "Algorithm and Data Structures for Efficient Energy
                 Maintenance during {Monte Carlo} Simulation of
                 Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "902--932",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.902",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.902;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.902",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Alkan:2004:RUC,
  author =       "Can Alkan and Evan E. Eichler and Jeffrey A. Bailey
                 and S. Cenk {\c{S}}ahinalp and Eray T{\"u}z{\"u}n",
  title =        "The Role of Unequal Crossover in Alpha-Satellite {DNA}
                 Evolution: a Computational Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "933--944",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.933",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.933;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.933",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Smith:2004:TQC,
  author =       "Kaleigh Smith and Mike Hallett",
  title =        "Towards Quality Control for {DNA} Microarrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "945--970",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.945",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.945;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.945",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Bay:2004:TAB,
  author =       "S. D. Bay and L. Chrisman and A. Pohorille and J.
                 Shrager",
  title =        "Temporal Aggregation Bias and Inference of Causal
                 Regulatory Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "971--985",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.971",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.971;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.971",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Ye:2004:AMP,
  author =       "Jieping Ye and Ravi Janardan",
  title =        "Approximate Multiple Protein Structure Alignment Using
                 the Sum-of-Pairs Distance",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "986--1000",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.986",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.986;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.986",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Csuros:2004:PGI,
  author =       "Mikl{\'o}s Cs{\"u}r{\"o}s and Aleksandar
                 Milosavljevic",
  title =        "Pooled Genomic Indexing {(PGI)}: Analysis and Design
                 of Experiments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "5",
  pages =        "1001--1021",
  month =        oct,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1001",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:44 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1001;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1001",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 November 2004",
}

@Article{Nuel:2004:LSL,
  author =       "G. Nuel",
  title =        "{LD-SPatt}: Large Deviations Statistics for Patterns
                 on {Markov} Chains",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1023--1033",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1023",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1023;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1023",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Gat-Viks:2004:MAH,
  author =       "Irit Gat-Viks and Amos Tanay and Ron Shamir",
  title =        "Modeling and Analysis of Heterogeneous Regulation in
                 Biological Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1034--1049",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1034",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1034;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1034",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Eres:2004:PPD,
  author =       "Revital Eres and Gad M. Landau and Laxmi Parida",
  title =        "Permutation Pattern Discovery in Biosequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1050--1060",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1050",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1050;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1050",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Comin:2004:PCM,
  author =       "Matteo Comin and Concettina Guerra and Giuseppe
                 Zanotti",
  title =        "{PROuST}: a Comparison Method of Three-Dimensional
                 Structures of Proteins Using Indexing Techniques",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1061--1072",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1061",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1061;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1061",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Bhattacharyya:2004:RSH,
  author =       "C. Bhattacharyya and L. R. Grate and M. I. Jordan and
                 L. {El Ghaoui} and I. S. Mian",
  title =        "Robust Sparse Hyperplane Classifiers: Application to
                 Uncertain Molecular Profiling Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1073--1089",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1073",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1073;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1073",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Chiappetta:2004:BSS,
  author =       "P. Chiappetta and M. C. Roubaud and B. Torr{\'e}sani",
  title =        "Blind Source Separation and the Analysis of Microarray
                 Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1090--1109",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1090",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1090;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1090",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Bocker:2004:SCU,
  author =       "Sebastian B{\"o}cker",
  title =        "Sequencing from Compomers: Using Mass Spectrometry for
                 {DNA} {\em de novo\/} Sequencing of 200+ nt",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1110--1134",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1110",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1110;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1110",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Dejori:2004:IIP,
  author =       "Math{\"a}us Dejori and Martin Stetter",
  title =        "Identifying Interventional and Pathogenic Mechanisms
                 by Generative Inverse Modeling of Gene Expression
                 Profiles",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1135--1148",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1135",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1135;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1135",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Palazoglu:2004:FDP,
  author =       "Ahmet Palazoglu and Attila Gursoy and Yaman Arkun and
                 Burak Erman",
  title =        "Folding Dynamics of Proteins from Denatured to Native
                 State: Principal Component Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1149--1168",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1149",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1149;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1149",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Barash:2004:SDS,
  author =       "Danny Barash",
  title =        "Spectral Decomposition for the Search and Analysis of
                 {RNA} Secondary Structure",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1169--1174",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1169",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1169;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1169",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Ge:2004:EBS,
  author =       "Nanxiang Ge and Charles B. Epstein",
  title =        "An Empirical {Bayesian} Significance Test of {cDNA}
                 Library Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1175--1188",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1175",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1175;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1175",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Conklin:2004:RHC,
  author =       "Darrell Conklin",
  title =        "Recognition of the Helical Cytokine Fold",
  journal =      j-J-COMPUT-BIOL,
  volume =       "11",
  number =       "6",
  pages =        "1189--1200",
  month =        dec,
  year =         "2004",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2004.11.1189",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:46 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2004.11.1189;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2004.11.1189",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "20 January 2005",
}

@Article{Rodin:2005:MGE,
  author =       "Andrei Rodin and Thomas H. {Mosley, Jr.} and Andrew G.
                 Clark and Charles F. Sing and Eric Boerwinkle",
  title =        "Mining Genetic Epidemiology Data with {Bayesian}
                 Networks Application to {\em {APOE}\/} Gene Variation
                 and Plasma Lipid Levels",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "1",
  pages =        "1--11",
  month =        feb,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "22 February 2005",
}

@Article{Yona:2005:URH,
  author =       "Golan Yona and Klara Kedem",
  title =        "The {URMS-RMS} Hybrid Algorithm for Fast and Sensitive
                 Local Protein Structure Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "1",
  pages =        "12--32",
  month =        feb,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.12",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.12;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.12",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "22 February 2005",
}

@Article{Nedelec:2005:PAA,
  author =       "Elodie N{\'e}d{\'e}lec and Thomas Moncion and
                 Elisabeth Gassiat and Bruno Bossard and Guillemette
                 Duchateau-Nguyen and Alain Denise and Michel Termier",
  title =        "A Pairwise Alignment Algorithm Which Favors Clusters
                 of Blocks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "1",
  pages =        "33--47",
  month =        feb,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.33",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.33;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.33",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "22 February 2005",
}

@Article{Zwolak:2005:PEM,
  author =       "Jason W. Zwolak and John J. Tyson and Layne T.
                 Watson",
  title =        "Parameter Estimation for a Mathematical Model of the
                 Cell Cycle in Frog Eggs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "1",
  pages =        "48--63",
  month =        feb,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.48",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.48;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.48",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "22 February 2005",
}

@Article{Blekas:2005:MBP,
  author =       "Konstantinos Blekas and Dimitrios I. Fotiadis and
                 Aristidis Likas",
  title =        "Motif-Based Protein Sequence Classification Using
                 Neural Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "1",
  pages =        "64--82",
  month =        feb,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.64",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.64;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.64",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "22 February 2005",
}

@Article{Clote:2005:EAC,
  author =       "P. Clote",
  title =        "An Efficient Algorithm to Compute the Landscape of
                 Locally Optimal {RNA} Secondary Structures with Respect
                 to the {Nussinov--Jacobson} Energy Model",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "1",
  pages =        "83--101",
  month =        feb,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.83",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.83;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.83",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "22 February 2005",
}

@Article{Lin:2005:EAS,
  author =       "Ying Chih Lin and Chin Lung Lu and Hwan-You Chang and
                 Chuan Yi Tang",
  title =        "An Efficient Algorithm for Sorting by
                 Block-Interchanges and Its Application to the Evolution
                 of Vibrio Species",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "1",
  pages =        "102--112",
  month =        feb,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.102",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:49 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.102;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.102",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "22 February 2005",
}

@Article{Pradines:2005:APL,
  author =       "Jo{\"e}l R. Pradines and Victor Farutin and Steve
                 Rowley and Vlado Dan{\v{c}}{\'\i}k",
  title =        "Analyzing Protein Lists with Large Networks:
                 Edge-Count Probabilities in Random Graphs with Given
                 Expected Degrees",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "2",
  pages =        "113--128",
  month =        mar,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.113",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:51 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.113;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.113",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "14 March 2005",
}

@Article{Chen:2005:MRP,
  author =       "Zhi-Zhong Chen and Guohui Lin and Romeo Rizzi and
                 Jianjun Wen and Dong Xu and Ying Xu and Tao Jiang",
  title =        "More Reliable Protein {NMR} Peak Assignment via
                 Improved $2$-Interval Scheduling",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "2",
  pages =        "129--146",
  month =        mar,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.129",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:51 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.129;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.129",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "14 March 2005",
}

@Article{Song:2005:CMA,
  author =       "Yun S. Song and Jotun Hein",
  title =        "Constructing Minimal Ancestral Recombination Graphs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "2",
  pages =        "147--169",
  month =        mar,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.147",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:51 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.147;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.147",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "14 March 2005",
}

@Article{Li:2005:EBP,
  author =       "Lei M. Li and Henry Horng-Shing Lu",
  title =        "Explore Biological Pathways from Noisy Array Data by
                 Directed Acyclic {Boolean} Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "2",
  pages =        "170--185",
  month =        mar,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.170",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:51 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.170;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.170",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "14 March 2005",
}

@Article{Hobolth:2005:AHM,
  author =       "Asger Hobolth and Jens Ledet Jensen",
  title =        "Applications of Hidden {Markov} Models for
                 Characterization of Homologous {DNA} Sequences with a
                 Common Gene",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "2",
  pages =        "186--203",
  month =        mar,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.186",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:51 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.186;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.186",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "14 March 2005",
}

@Article{Sturmfels:2005:TIPa,
  author =       "Bernd Sturmfels and Seth Sullivant",
  title =        "Toric Ideals of Phylogenetic Invariants",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "2",
  pages =        "204--228",
  month =        mar,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.204",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:51 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.204;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.204",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "14 March 2005",
}

@Article{Xing:2005:SMC,
  author =       "Biao Xing and Mark J. van der Laan",
  title =        "A Statistical Method for Constructing Transcriptional
                 Regulatory Networks Using Gene Expression and Sequence
                 Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "2",
  pages =        "229--246",
  month =        mar,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.229",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:51 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.229;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.229",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "14 March 2005",
}

@Article{Nov:2005:MAP,
  author =       "Yuval Nov and Lawrence M. Wein",
  title =        "Modeling and Analysis of Protein Design under Resource
                 Constraints",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "2",
  pages =        "247--282",
  month =        mar,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.247",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:51 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.247;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.247",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "14 March 2005",
}

@Article{Wendl:2005:PAC,
  author =       "Michael C. Wendl",
  title =        "Probabilistic Assessment of Clone Overlaps in {DNA}
                 Fingerprint Mapping via a Priori Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "3",
  pages =        "283--297",
  month =        apr,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.283",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:53 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.283;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.283",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 April 2005",
}

@Article{Jia:2005:RPM,
  author =       "Yuting Jia and T. Gregory Dewey",
  title =        "A Random Polymer Model of the Statistical Significance
                 of Structure Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "3",
  pages =        "298--313",
  month =        apr,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.298",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:53 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.298;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.298",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 April 2005",
}

@Article{Hertzberg:2005:FMP,
  author =       "Libi Hertzberg and Or Zuk and Gad Getz and Eytan
                 Domany",
  title =        "Finding Motifs in Promoter Regions",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "3",
  pages =        "314--330",
  month =        apr,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.314",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:53 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.314;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.314",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 April 2005",
}

@Article{Leung:2005:NCP,
  author =       "Ming-Ying Leung and Kwok Pui Choi and Aihua Xia and
                 Louis H. Y. Chen",
  title =        "Nonrandom Clusters of Palindromes in Herpesvirus
                 Genomes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "3",
  pages =        "331--354",
  month =        apr,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.331",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:53 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.331;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.331",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 April 2005",
}

@Article{Wagner:2005:LRM,
  author =       "Michael Wagner and Rafa{\l} Adamczak and Aleksey
                 Porollo and Jaros{\l}aw Meller",
  title =        "Linear Regression Models for Solvent Accessibility
                 Prediction in Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "3",
  pages =        "355--369",
  month =        apr,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.355",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:53 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.355;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.355",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 April 2005",
}

@Article{Li:2005:EHT,
  author =       "Lang Li and Huidong Shi and Constantin Yiannoutsos and
                 Tim Hui-Ming Huang and Kenneth P. Nephew",
  title =        "Epigenetic Hypothesis Tests for Methylation and
                 Acetylation in a Triple Microarray System",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "3",
  pages =        "370--390",
  month =        apr,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.370",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:53 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.370;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.370",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 April 2005",
}

@Article{Zhang:2005:BNI,
  author =       "Dabao Zhang and Martin T. Wells and Christine D. Smart
                 and William E. Fry",
  title =        "{Bayesian} Normalization and Identification for
                 Differential Gene Expression Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "4",
  pages =        "391--406",
  month =        may,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.391",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.391;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.391",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "9 May 2005",
}

@Article{Lippert:2005:SEW,
  author =       "Ross A. Lippert",
  title =        "Space-Efficient Whole Genome Comparisons with
                 {Burrows--Wheeler} Transforms",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "4",
  pages =        "407--415",
  month =        may,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.407",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.407;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.407",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "9 May 2005",
}

@Article{Keich:2005:SFA,
  author =       "Uri Keich",
  title =        "{sFFT}: a Faster Accurate Computation of the $p$-Value
                 of the Entropy Score",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "4",
  pages =        "416--430",
  month =        may,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.416",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.416;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.416",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "9 May 2005",
}

@Article{Linhart:2005:DPD,
  author =       "Chaim Linhart and Ron Shamir",
  title =        "The Degenerate Primer Design Problem: Theory and
                 Applications",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "4",
  pages =        "431--456",
  month =        may,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.431",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.431;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.431",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "9 May 2005",
}

@Article{Sturmfels:2005:TIPb,
  author =       "Bernd Sturmfels and Seth Sullivant",
  title =        "Toric Ideals of Phylogenetic Invariants",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "4",
  pages =        "457--481",
  month =        may,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.457",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.457;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.457",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "9 May 2005",
}

@Article{Pounds:2005:SDE,
  author =       "Stan Pounds and Cheng Cheng",
  title =        "Statistical Development and Evaluation of Microarray
                 Gene Expression Data Filters",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "4",
  pages =        "482--495",
  month =        may,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.482",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:55 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.482;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.482",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "9 May 2005",
}

@Article{Dew:2005:TAM,
  author =       "Ian M. Dew and Brian Walenz and Granger Sutton",
  title =        "A Tool for Analyzing Mate Pairs in Assemblies
                 {(TAMPA)}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "5",
  pages =        "497--513",
  month =        jun,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.497",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:56 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.497;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.497",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 June 2005",
}

@Article{Sharan:2005:MSG,
  author =       "Roded Sharan and Jens Gramm and Zohar Yakhini and Amir
                 Ben-Dor",
  title =        "Multiplexing Schemes for Generic {SNP} Genotyping
                 Assays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "5",
  pages =        "514--533",
  month =        jun,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.514",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:56 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.514;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.514",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 June 2005",
}

@Article{Berrar:2005:STA,
  author =       "Daniel Berrar and Brian Sturgeon and Ian Bradbury and
                 C. Stephen Downes and Werner Dubitzky",
  title =        "Survival Trees for Analyzing Clinical Outcome in Lung
                 Adenocarcinomas Based on Gene Expression Profiles:
                 Identification of Neogenin and Diacylglycerol Kinase $
                 \alpha $ Expression as Critical Factors",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "5",
  pages =        "534--544",
  month =        jun,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.534",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:56 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.534;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.534",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 June 2005",
}

@Article{Dehnert:2005:GPB,
  author =       "Manuel Dehnert and Rainer Plaumann and Werner E. Helm
                 and Marc-Th. H{\"u}tt",
  title =        "Genome Phylogeny Based on Short-Range Correlations in
                 {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "5",
  pages =        "545--553",
  month =        jun,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.545",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:56 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.545;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.545",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 June 2005",
}

@Article{Schuemie:2005:WSD,
  author =       "Martijn J. Schuemie and Jan A. Kors and Barend Mons",
  title =        "Word Sense Disambiguation in the Biomedical Domain: An
                 Overview",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "5",
  pages =        "554--565",
  month =        jun,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.554",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:56 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.554;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.554",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "13 June 2005",
}

@Article{Gusfield:2005:PSR,
  author =       "Dan Gusfield",
  title =        "Preface: Special {RECOMB 2004} Issue",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "567--568",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.567",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.567",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Bailey-Kellogg:2005:RGA,
  author =       "Chris Bailey-Kellogg and Sheetal Chainraj and Gopal
                 Pandurangan",
  title =        "A Random Graph Approach to {NMR} Sequential
                 Assignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "569--583",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.569",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.569;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.569",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Beerenwinkel:2005:LME,
  author =       "Niko Beerenwinkel and J{\"o}rg Rahnenf{\"u}hrer and
                 Martin D{\"a}umer and Daniel Hoffmann and Rolf Kaiser
                 and Joachim Selbig and Thomas Lengauer",
  title =        "Learning Multiple Evolutionary Pathways from
                 Cross-Sectional Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "584--598",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.584",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.584;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.584",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Chatterji:2005:LMO,
  author =       "Sourav Chatterji and Lior Pachter",
  title =        "Large Multiple Organism Gene Finding by Collapsed
                 {Gibbs} Sampling",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "599--608",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.599",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.599;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.599",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Erdmann:2005:PSK,
  author =       "Michael A. Erdmann",
  title =        "Protein Similarity from Knot Theory: Geometric
                 Convolution and Line Weavings",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "609--637",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.609",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.609;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.609",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{He:2005:ICG,
  author =       "Xin He and Michael H. Goldwasser",
  title =        "Identifying Conserved Gene Clusters in the Presence of
                 Homology Families",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "638--656",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.638",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.638;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.638",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Huan:2005:CGR,
  author =       "Jun Huan and Deepak Bandyopadhyay and Wei Wang and
                 Jack Snoeyink and Jan Prins and Alexander Tropsha",
  title =        "Comparing Graph Representations of Protein Structure
                 for Mining Family-Specific Residue-Based Packing
                 Motifs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "657--671",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.657",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.657;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.657",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Ledent:2005:CHM,
  author =       "Sabrina Ledent and St{\'e}phane Robin",
  title =        "Checking Homogeneity of Motifs' Distribution in
                 Heterogeneous Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "672--685",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.672",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.672;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.672",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Leung:2005:FMI,
  author =       "Henry C. M. Leung and Francis Y. L. Chin and S. M. Yiu
                 and Roni Rosenfeld and W. W. Tsang",
  title =        "Finding Motifs with Insufficient Number of Strong
                 Binding Sites",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "686--701",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.686",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.686;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.686",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Li:2005:CEK,
  author =       "Haifeng Li and Tao Jiang",
  title =        "A Class of Edit Kernels for {SVMs} to Predict
                 Translation Initiation Sites in Eukaryotic {mRNAs}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "702--718",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.702",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.702;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.702",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Li:2005:CMR,
  author =       "Jing Li and Tao Jiang",
  title =        "Computing the Minimum Recombinant Haplotype
                 Configuration from Incomplete Genotype Data on a
                 Pedigree by Integer Linear Programming",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "719--739",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.719",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.719;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.719",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Lilien:2005:NEB,
  author =       "Ryan H. Lilien and Brian W. Stevens and Amy C.
                 Anderson and Bruce R. Donald",
  title =        "A Novel Ensemble-Based Scoring and Search Algorithm
                 for Protein Redesign and Its Application to Modify the
                 Substrate Specificity of the {Gramicidin} Synthetase
                 {A} Phenylalanine Adenylation Enzyme",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "740--761",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.740",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.740;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.740",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Lippert:2005:FAG,
  author =       "Ross A. Lippert and Xiaoyue Zhao and Liliana Florea
                 and Clark Mobarry and Sorin Istrail",
  title =        "Finding Anchors for Genomic Sequence Comparison",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "762--776",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.762",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.762;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.762",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Menke:2005:WPN,
  author =       "Matthew Menke and Jonathan King and Bonnie Berger and
                 Lenore Cowen",
  title =        "Wrap-and-Pack: a New Paradigm for Beta Structural
                 Motif Recognition with Application to Recognizing Beta
                 Trefoils",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "777--795",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.777",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.777;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.777",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Nakhleh:2005:RRE,
  author =       "Luay Nakhleh and Tandy Warnow and C. Randal Linder and
                 Katherine {St.John}",
  title =        "Reconstructing Reticulate Evolution in Species ---
                 Theory and Practice",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "796--811",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.796",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.796;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.796",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Sankoff:2005:CBR,
  author =       "David Sankoff and Phil Trinh",
  title =        "Chromosomal Breakpoint Reuse in Genome Sequence
                 Rearrangement",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "812--821",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.812",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.812;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.812",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Segal:2005:DMI,
  author =       "Eran Segal and Roded Sharan",
  title =        "A Discriminative Model for Identifying Spatial {\em
                 cis\/}-Regulatory Modules",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "822--834",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.822",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.822;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.822",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Sharan:2005:IPC,
  author =       "Roded Sharan and Trey Ideker and Brian Kelley and Ron
                 Shamir and Richard M. Karp",
  title =        "Identification of Protein Complexes by Comparative
                 Analysis of Yeast and Bacterial Protein Interaction
                 Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "835--846",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.835",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.835;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.835",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Sun:2005:DMS,
  author =       "Yanni Sun and Jeremy Buhler",
  title =        "Designing Multiple Simultaneous Seeds for {DNA}
                 Similarity Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "847--861",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.847",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.847;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.847",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Tang:2005:UMP,
  author =       "Xinyu Tang and Bonnie Kirkpatrick and Shawna Thomas
                 and Guang Song and Nancy M. Amato",
  title =        "Using Motion Planning to Study {RNA} Folding
                 Kinetics",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "862--881",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.862",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.862;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.862",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Wu:2005:SMI,
  author =       "Zhijin Wu and Rafael A. Irizarry",
  title =        "Stochastic Models Inspired by Hybridization Theory for
                 Short Oligonucleotide Arrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "882--893",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.882",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.882;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.882",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Zhao:2005:FSD,
  author =       "Xiaoyue Zhao and Haiyan Huang and Terence P. Speed",
  title =        "Finding Short {DNA} Motifs Using Permuted {Markov}
                 Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "894--906",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.894",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.894;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.894",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Anonymous:2005:C,
  author =       "Anonymous",
  title =        "Correction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "6",
  pages =        "907--907",
  month =        jul,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.907",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:47:58 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.907",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "18 August 2005",
}

@Article{Battle:2005:PDO,
  author =       "Alexis Battle and Eran Segal and Daphne Koller",
  title =        "Probabilistic Discovery of Overlapping Cellular
                 Processes and Their Regulation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "7",
  pages =        "909--927",
  month =        sep,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.909",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.909;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.909",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "4 October 2005",
}

@Article{Wexler:2005:FAT,
  author =       "Ydo Wexler and Zohar Yakhini and Yechezkel Kashi and
                 Dan Geiger",
  title =        "Finding Approximate Tandem Repeats in Genomic
                 Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "7",
  pages =        "928--942",
  month =        sep,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.928",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.928;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.928",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "4 October 2005",
}

@Article{Lippert:2005:SEC,
  author =       "Ross A. Lippert and Clark M. Mobarry and Brian P.
                 Walenz",
  title =        "A Space-Efficient Construction of the
                 {Burrows--Wheeler} Transform for Genomic Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "7",
  pages =        "943--951",
  month =        sep,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.943",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.943;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.943",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "4 October 2005",
}

@Article{Xie:2005:BMM,
  author =       "Jun Xie and Nak-Kyeong Kim",
  title =        "{Bayesian} Models and {Markov} Chain {Monte Carlo}
                 Methods for Protein Motifs with the Secondary
                 Characteristics",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "7",
  pages =        "952--970",
  month =        sep,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.952",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.952;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.952",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "4 October 2005",
}

@Article{Liu:2005:FCB,
  author =       "Jian Liu and Ming Li",
  title =        "Finding Cancer Biomarkers from Mass Spectrometry Data
                 by Decision Lists",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "7",
  pages =        "971--979",
  month =        sep,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.971",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.971;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.971",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "4 October 2005",
}

@Article{Sharon:2005:CBV,
  author =       "Itai Sharon and Aaron Birkland and Kuan Chang and Ran
                 El-Yaniv and Golan Yona",
  title =        "Correcting {BLAST} $e$-Values for Low-Complexity
                 Segments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "7",
  pages =        "980--1003",
  month =        sep,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.980",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.980;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.980",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "4 October 2005",
}

@Article{Tichy:2005:EPT,
  author =       "Robert F. Tichy and Stephan Wagner",
  title =        "Extremal Problems for Topological Indices in
                 Combinatorial Chemistry",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "7",
  pages =        "1004--1013",
  month =        sep,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1004",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1004;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1004",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "4 October 2005",
}

@Article{Kaufman:2005:CPA,
  author =       "Menachem Kaufman and David Bloch and Naomi Zurgil and
                 Yana Shafran and Mordechai Deutsch",
  title =        "A Cluster Pattern Algorithm for the Analysis of
                 Multiparametric Cell Assays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "7",
  pages =        "1014--1028",
  month =        sep,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1014",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1014;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1014",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "4 October 2005",
}

@Article{Zhu:2005:HTS,
  author =       "Dongxiao Zhu and Alfred O. Hero and Zhaohui S. Qin and
                 Anand Swaroop",
  title =        "High Throughput Screening of Co-Expressed Gene Pairs
                 with Controlled False Discovery Rate {(FDR)} and
                 Minimum Acceptable Strength {(MAS)}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "7",
  pages =        "1029--1045",
  month =        sep,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1029",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:01 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1029;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1029",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "4 October 2005",
}

@Article{Zhao:2005:CAQ,
  author =       "Sheng Zhao and Russell D. Fernald",
  title =        "Comprehensive Algorithm for Quantitative Real-Time
                 Polymerase Chain Reaction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "8",
  pages =        "1047--1064",
  month =        oct,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1047",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1047;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1047",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 October 2005",
}

@Article{Morgante:2005:SMS,
  author =       "Michele Morgante and Alberto Policriti and Nicola
                 Vitacolonna and Andrea Zuccolo",
  title =        "Structured Motifs Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "8",
  pages =        "1065--1082",
  month =        oct,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1065",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1065;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1065",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 October 2005",
}

@Article{Hoberman:2005:SAS,
  author =       "Rose Hoberman and David Sankoff and Dannie Durand",
  title =        "The Statistical Analysis of Spatially Clustered Genes
                 under the Maximum Gap Criterion",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "8",
  pages =        "1083--1102",
  month =        oct,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1083",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1083;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1083",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 October 2005",
}

@Article{Yang:2005:GCU,
  author =       "Albert C.-C. Yang and Ary L. Goldberger and C.-K.
                 Peng",
  title =        "Genomic Classification Using an Information-Based
                 Similarity Index: Application to the {SARS}
                 Coronavirus",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "8",
  pages =        "1103--1116",
  month =        oct,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1103",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1103;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1103",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 October 2005",
}

@Article{Rajasekaran:2005:EAP,
  author =       "S. Rajasekaran and S. Balla and C.-H. Huang",
  title =        "Exact Algorithms for Planted Motif Problems",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "8",
  pages =        "1117--1128",
  month =        oct,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1117",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1117;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1117",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 October 2005",
}

@Article{DYachkov:2005:CPD,
  author =       "A. D'Yachkov and Frank Hwang and Antony Macula and
                 Pavel Vilenkin and Chih-Wen Weng",
  title =        "A Construction of Pooling Designs with Some Happy
                 Surprises",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "8",
  pages =        "1129--1136",
  month =        oct,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1129",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:03 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1129;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1129",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "21 October 2005",
}

@Article{Preparata:2005:QPS,
  author =       "Franco P. Preparata and Louxin Zhang and Kwok Pui
                 Choi",
  title =        "Quick, Practical Selection of Effective Seeds for
                 Homology Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "9",
  pages =        "1137--1152",
  month =        nov,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1137",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1137;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1137",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 November 2005",
}

@Article{Yin:2005:FCC,
  author =       "Changchuan Yin and Stephen S.-T. Yau",
  title =        "A {Fourier} Characteristic of Coding Sequences:
                 Origins and a Non-{Fourier} Approximation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "9",
  pages =        "1153--1165",
  month =        nov,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1153",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1153;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1153",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 November 2005",
}

@Article{Christensen:2005:PLA,
  author =       "Ole F. Christensen and Asger Hobolth and Jens L.
                 Jensen",
  title =        "Pseudo-Likelihood Analysis of Codon Substitution
                 Models with Neighbor-Dependent Rates",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "9",
  pages =        "1166--1182",
  month =        nov,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1166",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1166;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1166",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 November 2005",
}

@Article{Rosenberg:2005:ASI,
  author =       "Noah A. Rosenberg",
  title =        "Algorithms for Selecting Informative Marker Panels for
                 Population Assignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "9",
  pages =        "1183--1201",
  month =        nov,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1183",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1183;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1183",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 November 2005",
}

@Article{Yang:2005:EED,
  author =       "Chu-Wen Yang and Chin-Fu Hsiao and Chen-Kung Chou",
  title =        "Evaluation of Experimental Designs for Two-Color
                 {cDNA} Microarrays",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "9",
  pages =        "1202--1220",
  month =        nov,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1202",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1202;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1202",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 November 2005",
}

@Article{Aung:2005:APS,
  author =       "Zeyar Aung and Kian-Lee Tan",
  title =        "Automatic {$3$D} Protein Structure Classification
                 without Structural Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "9",
  pages =        "1221--1241",
  month =        nov,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1221",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:05 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1221;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1221",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 November 2005",
}

@Article{Kimmel:2005:BFH,
  author =       "Gad Kimmel and Ron Shamir",
  title =        "A Block-Free Hidden {Markov} Model for Genotypes and
                 Its Application to Disease Association",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "10",
  pages =        "1243--1260",
  month =        dec,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1243",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1243;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1243",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "27 December 2005",
}

@Article{Huang:2005:AAH,
  author =       "Yao-Ting Huang and Kun-Mao Chao and Ting Chen",
  title =        "An Approximation Algorithm for Haplotype Inference by
                 Maximum Parsimony",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "10",
  pages =        "1261--1274",
  month =        dec,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1261",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1261;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1261",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "27 December 2005",
}

@Article{Dunlavy:2005:HHO,
  author =       "Daniel M. Dunlavy and Dianne P. O'leary and Dmitri
                 Klimov and D. Thirumalai",
  title =        "{HOPE}: a Homotopy Optimization Method for Protein
                 Structure Prediction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "10",
  pages =        "1275--1288",
  month =        dec,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1275",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1275;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1275",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "27 December 2005",
}

@Article{Landau:2005:GPA,
  author =       "Gad M. Landau and Laxmi Parida and Oren Weimann",
  title =        "Gene Proximity Analysis across Whole Genomes via {PQ}
                 Trees$^1$",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "10",
  pages =        "1289--1306",
  month =        dec,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1289",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1289;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1289",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "27 December 2005",
}

@Article{Liebermeister:2005:PPC,
  author =       "Wolfram Liebermeister",
  title =        "Predicting Physiological Concentrations of Metabolites
                 from Their Molecular Structure",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "10",
  pages =        "1307--1315",
  month =        dec,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1307",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1307;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1307",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "27 December 2005",
}

@Article{Tosatto:2005:VFF,
  author =       "Silvio C. E. Tosatto",
  title =        "The {Victor/FRST} Function for Model Quality
                 Estimation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "10",
  pages =        "1316--1327",
  month =        dec,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1316",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1316;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1316",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "27 December 2005",
}

@Article{Gupta:2005:SAI,
  author =       "Arvind Gupta and J{\'a}n Ma{\v{n}}uch and Ladislav
                 Stacho",
  title =        "Structure-Approximating Inverse Protein Folding
                 Problem in the {$2$D} {HP} Model",
  journal =      j-J-COMPUT-BIOL,
  volume =       "12",
  number =       "10",
  pages =        "1328--1345",
  month =        dec,
  year =         "2005",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2005.12.1328",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:07 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2005.12.1328;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2005.12.1328",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "27 December 2005",
}

@Article{West:2006:VPS,
  author =       "Joseph West and John Healy and Michael Wigler and
                 William Casey and Bud Mishra",
  title =        "Validation of \bioname{S. Pombe} Sequence Assembly by
                 Microarray Hybridization",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "1",
  pages =        "1--20",
  month =        jan,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 February 2006",
}

@Article{Chiang:2006:GTC,
  author =       "David Chiang and Aravind K. Joshi and Ken A. Dill",
  title =        "A Grammatical Theory for the Conformational Changes of
                 Simple Helix Bundles",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "1",
  pages =        "21--42",
  month =        jan,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.21",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.21;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.21",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 February 2006",
}

@Article{Vesterstrom:2006:FSS,
  author =       "Jakob Vesterstr{\o}m and William R. Taylor",
  title =        "Flexible Secondary Structure Based Protein Structure
                 Comparison Applied to the Detection of Circular
                 Permutation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "1",
  pages =        "43--63",
  month =        jan,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.43",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.43;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.43",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 February 2006",
}

@Article{Havilio:2006:SDB,
  author =       "Moshe Havilio",
  title =        "Signal Deconvolution Based Expression-Detection and
                 Background Adjustment for Microarray Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "1",
  pages =        "63--80",
  month =        jan,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.63",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.63;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.63",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 February 2006",
}

@Article{Gambin:2006:ACD,
  author =       "Anna Gambin and Jerzy Tiuryn and Jerzy Tyszkiewicz",
  title =        "Alignment with Context Dependent Scoring Function",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "1",
  pages =        "81--101",
  month =        jan,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.81",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.81;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.81",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 February 2006",
}

@Article{Bhasin:2006:RCH,
  author =       "Manoj Bhasin and Ellis L. Reinherz and Pedro A.
                 Reche",
  title =        "Recognition and Classification of Histones Using
                 Support Vector Machine",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "1",
  pages =        "102--112",
  month =        jan,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.102",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.102;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.102",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 February 2006",
}

@Article{Hohm:2006:MEM,
  author =       "Tim Hohm and Philipp Limbourg and Daniel Hoffmann",
  title =        "A Multiobjective Evolutionary Method for the Design of
                 Peptidic Mimotopes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "1",
  pages =        "113--125",
  month =        jan,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.113",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.113;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.113",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 February 2006",
}

@Article{Yeh:2006:PMP,
  author =       "Joanne I. Yeh and Lisong Mao",
  title =        "Prediction of Membrane Proteins in
                 \bioname{Mycobacterium tuberculosis} Using a Support
                 Vector Machine Algorithm",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "1",
  pages =        "126--129",
  month =        jan,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.126",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:09 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.126;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.126",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 February 2006",
}

@Article{Miyano:2006:PSR,
  author =       "Satoru Miyano",
  title =        "Preface: Special {RECOMB 2005} Issue",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "131--132",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.131",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.131",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Scott:2006:EAD,
  author =       "Jacob Scott and Trey Ideker and Richard M. Karp and
                 Roded Sharan",
  title =        "Efficient Algorithms for Detecting Signaling Pathways
                 in Protein Interaction Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "133--144",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.133",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.133;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.133",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Jaimovich:2006:TIP,
  author =       "Ariel Jaimovich and Gal Elidan and Hanah Margalit and
                 Nir Friedman",
  title =        "Towards an Integrated Protein--Protein Interaction
                 Network: a Relational {Markov} Network Approach",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "145--164",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.145",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.145;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.145",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Gat-Viks:2006:PMI,
  author =       "Irit Gat-Viks and Amos Tanay and Daniela Raijman and
                 Ron Shamir",
  title =        "A Probabilistic Methodology for Integrating Knowledge
                 and Experiments on Biological Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "165--181",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.165",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.165;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.165",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Koyuturk:2006:PAP,
  author =       "Mehmet Koyut{\"u}rk and Yohan Kim and Umut Topkara and
                 Shankar Subramaniam and Wojciech Szpankowski and Ananth
                 Grama",
  title =        "Pairwise Alignment of Protein Interaction Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "182--199",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.182",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.182;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.182",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Frey:2006:GGM,
  author =       "Brendan J. Frey and Quaid D. Morris and Timothy R.
                 Hughes",
  title =        "{GenRate}: a Generative Model that Reveals Novel
                 Transcripts in Genome-Tiling Microarray Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "200--214",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.200",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.200;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.200",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Lipson:2006:ECI,
  author =       "Doron Lipson and Yonatan Aumann and Amir Ben-Dor and
                 Nathan Linial and Zohar Yakhini",
  title =        "Efficient Calculation of Interval Scores for {DNA}
                 Copy Number Data Analysis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "215--228",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.215",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.215;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.215",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Wu:2006:RET,
  author =       "Kun-Pin Wu and Jia-Ming Chang and Jun-Bo Chen and
                 Chi-Fon Chang and Wen-Jin Wu and Tai-Huang Huang and
                 Ting-Yi Sung and Wen-Lian Hsu",
  title =        "{RIBRA} --- An Error-Tolerant Algorithm for the {NMR}
                 Backbone Assignment Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "229--244",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.229",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.229;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.229",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Zilberstein:2006:HTA,
  author =       "Chaya Ben-Zaken Zilberstein and Michal Ziv-Ukelson and
                 Ron Y. Pinter and Zohar Yakhini",
  title =        "A High-Throughput Approach for Associating {MicroRNAs}
                 with Their Activity Conditions",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "245--266",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.245",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.245;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.245",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Alkan:2006:RRI,
  author =       "Can Alkan and Emre Karako{\c{c}} and Joseph H. Nadeau
                 and S. Cenk Sahinalp and Kaizhong Zhang",
  title =        "{RNA--RNA} Interaction Prediction and Antisense {RNA}
                 Target Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "267--282",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.267",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.267;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.267",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Bafna:2006:CFU,
  author =       "Vineet Bafna and Haixu Tang and Shaojie Zhang",
  title =        "Consensus Folding of Unaligned {RNA} Sequences
                 Revisited",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "283--295",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.283",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.283;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.283",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Rasmussen:2006:EGF,
  author =       "Kim R. Rasmussen and Professor Dr. Jens Stoye and
                 Eugene W. Myers",
  title =        "Efficient $q$-Gram Filters for Finding All $ \epsilon
                 $-Matches over a Given Length",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "296--308",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.296",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.296;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.296",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Sze:2006:PTS,
  author =       "Sing-Hoi Sze and Yue Lu and Qingwu Yang",
  title =        "A Polynomial Time Solvable Formulation of Multiple
                 Sequence Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "309--319",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.309",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.309;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.309",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Durand:2006:HMM,
  author =       "Dannie Durand and Bjarni V. Halld{\'o}rsson and
                 Benjamin Vernot",
  title =        "A Hybrid Micro--Macroevolutionary Approach to Gene
                 Tree Reconstruction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "320--335",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.320",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.320;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.320",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Ulitsky:2006:ACS,
  author =       "Igor Ulitsky and David Burstein and Tamir Tuller and
                 Benny Chor",
  title =        "The Average Common Substring Approach to Phylogenomic
                 Reconstruction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "336--350",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.336",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.336;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.336",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Przytycka:2006:GTI,
  author =       "Teresa Przytycka and George Davis and Nan Song and
                 Dannie Durand",
  title =        "Graph Theoretical Insights into Evolution of
                 Multidomain Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "351--363",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.351",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.351;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.351",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Bern:2006:NAP,
  author =       "Marshall Bern and David Goldberg",
  title =        "{{\em {De} Novo\/}} Analysis of Peptide Tandem Mass
                 Spectra by Spectral Graph Partitioning",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "364--378",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.364",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.364;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.364",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Gross:2006:UMA,
  author =       "Samuel S. Gross and Michael R. Brent",
  title =        "Using Multiple Alignments to Improve Gene Prediction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "379--393",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.379",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.379;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.379",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Liu:2006:PFR,
  author =       "Yan Liu and Jaime Carbonell and Peter Weigele and
                 Vanathi Gopalakrishnan",
  title =        "Protein Fold Recognition Using Segmentation
                 Conditional Random Fields {(SCRFs)}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "394--406",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.394",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.394;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.394",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Shatsky:2006:MCP,
  author =       "Maxim Shatsky and Alexandra Shulman-Peleg and Ruth
                 Nussinov and Haim J. Wolfson",
  title =        "The Multiple Common Point Set Problem and Its
                 Application to Molecule Binding Pattern Detection",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "407--428",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.407",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.407;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.407",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Chia:2006:PAS,
  author =       "Nicholas Chia and Ralf Bundschuh",
  title =        "A Practical Approach to Significance Assessment in
                 Alignment with Gaps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "429--441",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.429",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.429;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.429",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Valouev:2006:AOM,
  author =       "Anton Valouev and Lei Li and Yu-Chi Liu and David C.
                 Schwartz and Yi Yang and Yu Zhang and Michael S.
                 Waterman",
  title =        "Alignment of Optical Maps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "442--462",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.442",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.442;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.442",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Yeang:2006:MCF,
  author =       "Chen-Hsiang Yeang and Tommi Jaakkola",
  title =        "Modeling the Combinatorial Functions of Multiple
                 Transcription Factors",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "463--480",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.463",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.463;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.463",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Halperin:2006:HEH,
  author =       "Eran Halperin and Elad Hazan",
  title =        "{HAPLOFREQ} --- Estimating Haplotype Frequencies
                 Efficiently",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "481--500",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.481",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.481;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.481",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Bafna:2006:IAR,
  author =       "Vineet Bafna and Vikas Bansal",
  title =        "Inference about Recombination from Haplotype Data:
                 Lower Bounds and Recombination Hotspots",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "501--521",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.501",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.501;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.501",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Ding:2006:LTA,
  author =       "Zhihong Ding and Vladimir Filkov and Dan Gusfield",
  title =        "A Linear-Time Algorithm for the Perfect Phylogeny
                 Haplotyping {(PPH)} Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "522--553",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.522",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.522;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.522",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Mazowita:2006:SRM,
  author =       "Matthew Mazowita and Lani Haque and David Sankoff",
  title =        "Stability of Rearrangement Measures in the Comparison
                 of Genome Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "554--566",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.554",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.554;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.554",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Bergeron:2006:ST,
  author =       "Anne Bergeron and Julia Mixtacki and Jens Stoye",
  title =        "On Sorting by Translocations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "2",
  pages =        "567--578",
  month =        mar,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.567",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:11 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.567;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.567",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 April 2006",
}

@Article{Keles:2006:MTM,
  author =       "S{\"u}nd{\"u}z Kele{\c{s}} and Mark J. {Van Der Laan}
                 and Sandrine Dudoit and Simon E. Cawley",
  title =        "Multiple Testing Methods For {ChIP--Chip} High Density
                 Oligonucleotide Array Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "579--613",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.579",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.579;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.579",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Potra:2006:PIA,
  author =       "Florian A. Potra and Xing Liu and Fran{\c{c}}oise
                 Seillier-Moiseiwitsch and Anindya Roy and Yaming Hang
                 and Mark R. Marten and Babu Raman and Carol Whisnant",
  title =        "Protein Image Alignment via Piecewise Affine
                 Transformations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "614--630",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.614",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.614;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.614",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Pollastri:2006:MDR,
  author =       "Gianluca Pollastri and Alessandro Vullo and Paolo
                 Frasconi and Pierre Baldi",
  title =        "Modular {DAG--RNN} Architectures for Assembling Coarse
                 Protein Structures",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "631--650",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.631",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.631;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.631",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Nicolas:2006:RJM,
  author =       "Pierre Nicolas and Anne-Sophie Tocquet and Vincent
                 Miele and Florence Muri",
  title =        "A Reversible Jump {Markov} Chain {Monte Carlo}
                 Algorithm for Bacterial Promoter Motifs Discovery",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "651--667",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.651",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.651;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.651",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Konagurthu:2006:OSP,
  author =       "Arun S. Konagurthu and Peter J. Stuckey",
  title =        "Optimal Sum-of-Pairs Multiple Sequence Alignment Using
                 Incremental {Carrillo} and {Lipman} Bounds",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "668--685",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.668",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.668;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.668",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Carlson:2006:BBS,
  author =       "Jonathan M. Carlson and Arijit Chakravarty and Robert
                 H. Gross",
  title =        "{BEAM}: a Beam Search Algorithm for the Identification
                 of {{\em Cis\/}}-Regulatory Elements in Groups of
                 Genes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "686--701",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.686",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.686;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.686",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Jansson:2006:LGS,
  author =       "Jesper Jansson and Ngo Trung Hieu and Wing-Kin Sung",
  title =        "Local Gapped Subforest Alignment and Its Application
                 in Finding {RNA} Structural Motifs",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "702--718",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.702",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.702;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.702",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Ferre:2006:FMP,
  author =       "S{\'e}bastien Ferr{\'e} and Ross D. King",
  title =        "Finding Motifs in Protein Secondary Structure for Use
                 in Function Prediction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "719--731",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.719",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.719;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.719",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Mandoiu:2006:EAA,
  author =       "Ion I. M{\u{a}}ndoiu and Drago{\c{s}} Trinc{\u{a}}",
  title =        "Exact and Approximation Algorithms for {DNA} Tag Set
                 Design",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "732--744",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.732",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.732;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.732",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Reddy:2006:SBB,
  author =       "Chandan K. Reddy and Hsiao-Dong Chiang",
  title =        "A Stability Boundary Based Method for Finding Saddle
                 Points on Potential Energy Surfaces",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "745--766",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.745",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.745;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.745",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Ayers:2006:RAH,
  author =       "Kristin L. Ayers and Chiara Sabatti and Kenneth
                 Lange",
  title =        "Reconstructing Ancestral Haplotypes with a Dictionary
                 Model",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "767--785",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.767",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.767;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.767",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Huang:2006:LPW,
  author =       "Shuguang Huang and Yongming Qu",
  title =        "The Loss in Power When the Test of Differential
                 Expression Is Performed under a Wrong Scale",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "786--797",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.786",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.786;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.786",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Raghavan:2006:MGF,
  author =       "N. Raghavan and D. Amaratunga and J. Cabrera and A.
                 Nie and J. Qin and M. McMillian",
  title =        "On Methods for Gene Function Scoring as a Means of
                 Facilitating the Interpretation of Microarray Results",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "798--809",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.798",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.798;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.798",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Khanin:2006:HSF,
  author =       "Raya Khanin and Ernst Wit",
  title =        "How Scale-Free Are Biological Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "810--818",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.810",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.810;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.810",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Chor:2006:MLM,
  author =       "Benny Chor and Amit Khetan and Sagi Snir",
  title =        "Maximum Likelihood Molecular Clock Comb: Analytic
                 Solutions",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "819--837",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.819",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.819;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.819",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Golightly:2006:BSI,
  author =       "Andrew Golightly and Darren J. Wilkinson",
  title =        "{Bayesian} Sequential Inference for Stochastic Kinetic
                 Biochemical Network Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "3",
  pages =        "838--851",
  month =        apr,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.838",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:15 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.838;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.838",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "17 May 2006",
}

@Article{Hjelm:2006:NPN,
  author =       "Marcus Hjelm and Mattias H{\"o}glund and Jens
                 Lagergren",
  title =        "New Probabilistic Network Models and Algorithms for
                 Oncogenesis",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "853--865",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.853",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.853;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.853",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{DYachkov:2006:NGI,
  author =       "Arkadii G. D'Yachkov and Anthony J. Macula and Wendy
                 K. Pogozelski and Thomas E. Renz and Vyacheslav V.
                 Rykov and David C. Torney",
  title =        "New $t$-Gap Insertion-Deletion-Like Metrics for {DNA}
                 Hybridization Thermodynamic Modeling",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "866--881",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.866",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.866;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.866",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{Metzler:2006:RVG,
  author =       "Dirk Metzler",
  title =        "Robust {$E$}-Values for Gapped Local Alignments",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "882--896",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.882",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.882;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.882",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{Vijayasatya:2006:OAP,
  author =       "Ravi Vijayasatya and Amar Mukherjee",
  title =        "An Optimal Algorithm for Perfect Phylogeny
                 Haplotyping",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "897--928",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.897",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.897;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.897",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{Gunewardena:2006:EPT,
  author =       "Sumedha Gunewardena and Peter Jeavons and Zhaolei
                 Zhang",
  title =        "Enhancing the Prediction of Transcription Factor
                 Binding Sites by Incorporating Structural Properties
                 and Nucleotide Covariations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "929--945",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.929",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.929;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.929",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{Turutina:2006:IAA,
  author =       "Vera P. Turutina and Andrew A. Laskin and Nikolay A.
                 Kudryashov and Konstantin G. Skryabin and Eugene V.
                 Korotkov",
  title =        "Identification of Amino Acid Latent Periodicity within
                 94 Protein Families",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "946--964",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.946",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.946;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.946",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{Cameron:2006:DFA,
  author =       "Michael Cameron and Hugh E. Williams and Adam
                 Cannane",
  title =        "A Deterministic Finite Automaton for Faster Protein
                 Hit Detection in {BLAST}",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "965--978",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.965",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.965;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.965",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{Colannino:2006:LTA,
  author =       "Justin Colannino and Mirela Damian and Ferran Hurtado
                 and John Iacono and Henk Meijer and Suneeta Ramaswami
                 and Godfried Toussaint",
  title =        "An {$ O(n \log n) $}-Time Algorithm for the
                 Restriction Scaffold Assignment Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "979--989",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.979",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.979;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.979",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{Du:2006:NCT,
  author =       "Ding-Zhu Du and F. K. Hwang and Weili Wu and Taieb
                 Znati",
  title =        "New Construction for Transversal Design",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "990--995",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.990",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.990;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.990",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{Chudin:2006:MTV,
  author =       "E. Chudin and S. Kruglyak and S. C. Baker and S. Oeser
                 and D. Barker and T. K. McDaniel",
  title =        "A Model of Technical Variation of Microarray Signals",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "4",
  pages =        "996--1003",
  month =        may,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.996",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:17 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.996;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.996",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "8 June 2006",
}

@Article{Sankoff:2006:DGD,
  author =       "David Sankoff and Lani Haque",
  title =        "The Distribution of Genomic Distance between Random
                 Genomes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "5",
  pages =        "1005--1012",
  month =        jun,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1005",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1005;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1005",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 June 2006",
}

@Article{Kent:2006:CSE,
  author =       "Carmel Kent and Gad M. Landau and Michal Ziv-Ukelson",
  title =        "On the Complexity of Sparse Exon Assembly",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "5",
  pages =        "1013--1027",
  month =        jun,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1013",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1013;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1013",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 June 2006",
}

@Article{Morgulis:2006:FSD,
  author =       "Aleksandr Morgulis and E. Michael Gertz and Alejandro
                 A. Sch{\"a}ffer and Richa Agarwala",
  title =        "A Fast and Symmetric {DUST} Implementation to Mask
                 Low-Complexity {DNA} Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "5",
  pages =        "1028--1040",
  month =        jun,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1028",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1028;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1028",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 June 2006",
}

@Article{Maximova:2006:NAN,
  author =       "Tatiana Maximova and Chen Keasar",
  title =        "A Novel Algorithm for Non-Bonded-List Updating in
                 Molecular Simulations",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "5",
  pages =        "1041--1048",
  month =        jun,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1041",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1041;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1041",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 June 2006",
}

@Article{Goutsias:2006:STR,
  author =       "John Goutsias and Seungchan Kim",
  title =        "Stochastic Transcriptional Regulatory Systems with
                 Time Delays: a Mean-Field Approximation",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "5",
  pages =        "1049--1076",
  month =        jun,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1049",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1049;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1049",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 June 2006",
}

@Article{Chiang:2006:GRM,
  author =       "David Chiang and Aravind K. Joshi and David B.
                 Searls",
  title =        "Grammatical Representations of Macromolecular
                 Structure",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "5",
  pages =        "1077--1100",
  month =        jun,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1077",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1077;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1077",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 June 2006",
}

@Article{Allman:2006:ITT,
  author =       "Elizabeth S. Allman and John A. Rhodes",
  title =        "The Identifiability of Tree Topology for Phylogenetic
                 Models, Including Covarion and Mixture Models",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "5",
  pages =        "1101--1113",
  month =        jun,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1101",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1101;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1101",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 June 2006",
}

@Article{Beattie:2006:BSP,
  author =       "Bradley J. Beattie and Peter N. Robinson",
  title =        "Binary State Pattern Clustering: a Digital Paradigm
                 for Class and Biomarker Discovery in Gene Microarray
                 Studies of Cancer",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "5",
  pages =        "1114--1130",
  month =        jun,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1114",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:20 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1114;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1114",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "23 June 2006",
}

@Article{Presson:2006:MMD,
  author =       "Angela P. Presson and Eric Sobel and Kenneth Lange and
                 Dr. Jeanette C. Papp",
  title =        "Merging Microsatellite Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "6",
  pages =        "1131--1147",
  month =        jul,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1131",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1131;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1131",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 August 2006",
}

@Article{Wu:2006:CED,
  author =       "Dr. Jing Wu and David Haussler",
  title =        "Coding Exon Detection Using Comparative Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "6",
  pages =        "1148--1164",
  month =        jul,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1148",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1148;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1148",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 August 2006",
}

@Article{Horesh:2006:DAC,
  author =       "Yair Horesh and Ramit Mehr and Dr. Ron Unger",
  title =        "Designing an {$ A* $} Algorithm for Calculating Edit
                 Distance between Rooted-Unordered Trees",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "6",
  pages =        "1165--1176",
  month =        jul,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1165",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1165;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1165",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 August 2006",
}

@Article{Wendl:2006:GCT,
  author =       "Dr. Michael C. Wendl",
  title =        "A General Coverage Theory for Shotgun {DNA}
                 Sequencing",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "6",
  pages =        "1177--1196",
  month =        jul,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1177",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1177;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1177",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 August 2006",
}

@Article{Rodland:2006:PRS,
  author =       "Dr. Einar Andreas R{\o}dland",
  title =        "Pseudoknots in {RNA} Secondary Structures:
                 Representation, Enumeration, and Prevalence",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "6",
  pages =        "1197--1213",
  month =        jul,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1197",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1197;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1197",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 August 2006",
}

@Article{Christodoulakis:2006:CRR,
  author =       "M. Christodoulakis and C. Iliopoulos and L. Mouchard
                 and K. Perdikuri and A. Tsakalidis and Dr. K.
                 Tsichlas",
  title =        "Computation of Repetitions and Regularities of
                 Biologically Weighted Sequences",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "6",
  pages =        "1214--1231",
  month =        jul,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1214",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1214;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1214",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 August 2006",
}

@Article{Sitharam:2006:MVS,
  author =       "Dr. Meera Sitharam and Mavis Agbandje-Mckenna",
  title =        "Modeling Virus Self-Assembly Pathways: Avoiding
                 Dynamics Using Geometric Constraint Decomposition",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "6",
  pages =        "1232--1265",
  month =        jul,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1232",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:22 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1232;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1232",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "10 August 2006",
}

@Article{Wang:2006:PTA,
  author =       "Lincong Wang and Ramgopal R. Mettu and Bruce Randall
                 Donald",
  title =        "A Polynomial-Time Algorithm for {{\em {De} Novo\/}}
                 Protein Backbone Structure Determination from Nuclear
                 Magnetic Resonance Data",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "7",
  pages =        "1267--1288",
  month =        sep,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1267",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1267;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1267",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "12 October 2006",
}

@Article{Haimovich:2006:WAD,
  author =       "Adrian D. Haimovich and Bruce Byrne and Ramakrishna
                 Ramaswamy and William J. Welsh",
  title =        "Wavelet Analysis of {DNA} Walks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "7",
  pages =        "1289--1298",
  month =        sep,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1289",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1289;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1289",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "12 October 2006",
}

@Article{Koyuturk:2006:DCI,
  author =       "Mehmet Koyut{\"u}rk and Yohan Kim and Shankar
                 Subramaniam and Wojciech Szpankowski and Ananth Grama",
  title =        "Detecting Conserved Interaction Patterns in Biological
                 Networks",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "7",
  pages =        "1299--1322",
  month =        sep,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1299",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1299;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1299",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "12 October 2006",
}

@Article{Elias:2006:SIM,
  author =       "Dr. Isaac Elias",
  title =        "Settling the Intractability of Multiple Alignment",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "7",
  pages =        "1323--1339",
  month =        sep,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1323",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1323;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1323",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "12 October 2006",
}

@Article{Bergeron:2006:SSP,
  author =       "Anne Bergeron and Dr. Jens Stoye",
  title =        "On the Similarity of Sets of Permutations and Its
                 Applications to Genome Comparison",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "7",
  pages =        "1340--1354",
  month =        sep,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1340",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1340;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1340",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "12 October 2006",
}

@Article{Xu:2006:OMS,
  author =       "Dr. Jinbo Xu and Daniel Brown and Ming Li and Bin Ma",
  title =        "Optimizing Multiple Spaced Seeds for Homology Search",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "7",
  pages =        "1355--1368",
  month =        sep,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1355",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1355;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1355",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "12 October 2006",
}

@Article{Keith:2006:SEG,
  author =       "Dr. Jonathan M. Keith",
  title =        "Segmenting Eukaryotic Genomes with the Generalized
                 {Gibbs} Sampler",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "7",
  pages =        "1369--1383",
  month =        sep,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1369",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1369;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1369",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "12 October 2006",
}

@Article{Potra:2006:AFT,
  author =       "Dr. Florian A. Potra and Xing Liu",
  title =        "Aligning Families of Two-Dimensional Gels by a
                 Combined Multiresolution Forward-Inverse Transformation
                 Approach",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "7",
  pages =        "1384--1395",
  month =        sep,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1384",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:24 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1384;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1384",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "12 October 2006",
}

@Article{Swidan:2006:RAP,
  author =       "Dr. Firas Swidan and Michal Ziv-Ukelson and Ron Y.
                 Pinter",
  title =        "On the Repeat-Annotated Phylogenetic Tree
                 Reconstruction Problem",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "8",
  pages =        "1397--1418",
  month =        oct,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1397",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1397;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1397",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "24 October 2006",
}

@Article{Bonet:2006:ASD,
  author =       "Maria Luisa Bonet and Katherine {St.John} and Ruchi
                 Mahindru and Nina Amenta",
  title =        "Approximating Subtree Distances Between Phylogenies",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "8",
  pages =        "1419--1434",
  month =        oct,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1419",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1419;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1419",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "24 October 2006",
}

@Article{Just:2006:RED,
  author =       "Winfried Just",
  title =        "Reverse Engineering Discrete Dynamical Systems from
                 Data Sets with Random Input Vectors",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "8",
  pages =        "1435--1456",
  month =        oct,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1435",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1435;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1435",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "24 October 2006",
}

@Article{Richardson:2006:FSE,
  author =       "Dr. Joel E. Richardson",
  title =        "{\tt fjoin}: Simple and Efficient Computation of
                 Feature Overlaps",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "8",
  pages =        "1457--1464",
  month =        oct,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1457",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1457;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1457",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "24 October 2006",
}

@Article{Didier:2006:LDS,
  author =       "Gilles Didier and Ivan Laprevotte and Maude Pupin and
                 Alain H{\'e}naut",
  title =        "Local Decoding of Sequences and Alignment-Free
                 Comparison",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "8",
  pages =        "1465--1476",
  month =        oct,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1465",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1465;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1465",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "24 October 2006",
}

@Article{Menconi:2006:CBA,
  author =       "Giulia Menconi and Dr. Roberto Marangoni",
  title =        "A Compression-Based Approach for Coding Sequences
                 Identification. {I}. {Application} to Prokaryotic
                 Genomes",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "8",
  pages =        "1477--1488",
  month =        oct,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1477",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1477;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1477",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "24 October 2006",
}

@Article{Mooney:2006:PSM,
  author =       "Catherine Mooney and Alessandro Vullo and Dr. Gianluca
                 Pollastri",
  title =        "Protein Structural Motif Prediction in
                 Multidimensional $ \phi $--$ \psi $ Space Leads to
                 Improved Secondary Structure Prediction",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "8",
  pages =        "1489--1502",
  month =        oct,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1489",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1489;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1489",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "24 October 2006",
}

@Article{Emmert-Streib:2006:ACK,
  author =       "Dr. Frank Emmert-Streib",
  title =        "Algorithmic Computation of Knot Polynomials of
                 Secondary Structure Elements of Proteins",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "8",
  pages =        "1503--1512",
  month =        oct,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1503",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:26 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1503;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1503",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "24 October 2006",
}

@Article{Moerkerke:2006:SSD,
  author =       "B. Moerkerke and E. Goetghebeur",
  title =        "Selecting ``Significant'' Differentially Expressed
                 Genes from the Combined Perspective of the Null and the
                 Alternative",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "9",
  pages =        "1513--1531",
  month =        nov,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1513",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "https://www.liebertpub.com/doi/abs/10.1089/cmb.2006.13.1513;
                 https://www.liebertpub.com/doi/pdf/10.1089/cmb.2006.13.1513",
  acknowledgement = ack-nhfb,
  fjournal =     "Journal of Computational Biology",
  journal-URL =  "https://www.liebertpub.com/loi/cmb/",
  onlinedate =   "5 December 2006",
}

@Article{Chen:2006:DEA,
  author =       "Dr. Peter C. Y. Chen",
  title =        "A Discrete-Event Approach to Transcription Control
                 with Dynamic Event-Controllability",
  journal =      j-J-COMPUT-BIOL,
  volume =       "13",
  number =       "9",
  pages =        "1532--1545",
  month =        nov,
  year =         "2006",
  CODEN =        "JCOBEM",
  DOI =          "https://doi.org/10.1089/cmb.2006.13.1532",
  ISSN =         "1066-5277 (print), 1557-8666 (electronic)",
  ISSN-L =       "1066-5277",
  bibdate =      "Sat Jun 1 09:48:28 MDT 2019",
  bibsource =    "http://www.math.utah.edu/pub/tex/bib/jcomputbiol.bib",
  URL =          "