@Preamble{
"\hyphenation{ }" #
"\ifx \undefined \booktitle \def \booktitle #1{{{\em #1}}} \fi" #
"\ifx \undefined \circled \def \circled #1{(#1)} \fi" #
"\ifx \undefined \pkg \def \pkg #1{{{\tt #1}}} \fi" #
"\ifx \undefined \reg \def \reg {\circled{R}} \fi"
}
@String{ack-nhfb = "Nelson H. F. Beebe,
University of Utah,
Department of Mathematics, 110 LCB,
155 S 1400 E RM 233,
Salt Lake City, UT 84112-0090, USA,
Tel: +1 801 581 5254,
FAX: +1 801 581 4148,
e-mail: \path|beebe@math.utah.edu|,
\path|beebe@acm.org|,
\path|beebe@computer.org| (Internet),
URL: \path|https://www.math.utah.edu/~beebe/|"}
@String{j-J-OPEN-SOURCE-SOFT = "Journal of Open Source Software"}
@Article{Louppe:2016:PCL,
author = "Gilles Louppe and Kyle Cranmer and Juan Pavez",
title = "\pkg{carl}: a likelihood-free inference toolbox",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "1",
pages = "11:1--11:1",
month = may,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00011",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00011",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 May 2016",
ORCID-numbers = "Gilles Louppe / 0000-0002-2082-3106; Kyle Cranmer /
0000-0002-5769-7094; Juan Pavez / 0000-0002-7205-0053",
}
@Article{VanderPlas:2016:PMC,
author = "Jake VanderPlas",
title = "\pkg{mst\_clustering}: Clustering via {Euclidean}
Minimum Spanning Trees",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "1",
pages = "12:1--12:1",
month = may,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00012",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00012",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "16 May 2016",
ORCID-numbers = "Jake VanderPlas / 0000-0002-9623-3401",
}
@Article{Harpole:2016:PRR,
author = "Alice Harpole and Ian Hawke",
title = "\pkg{R3D2}: {Relativistic Reactive Riemann problem
solver for Deflagrations and Detonations}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "1",
pages = "16:1--16:1",
month = may,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00016",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00016",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 May 2016",
ORCID-numbers = "Alice Harpole / 0000-0002-1530-781X; Ian Hawke /
0000-0003-4805-0309",
}
@Article{Zhang:2016:ASG,
author = "Zhao Zhang and Daniel S. Katz and Andre Merzky and
Matteo Turilli and Shantenu Jha and Yadu Nand",
title = "Application Skeleton: Generating Synthetic
Applications for Infrastructure Research",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "1",
pages = "17:1--17:2",
month = may,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00017",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00017",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 May 2016",
ORCID-numbers = "Zhao Zhang / 0000-0001-5921-0035; Daniel S. Katz /
0000-0001-5934-7525; Andre Merzky /
0000-0002-7228-4327; Matteo Turilli /
0000-0003-0527-1435; Shantenu Jha /
0000-0002-5040-026X; Yadu Nand / 0000-0002-9162-6003",
}
@Article{Wakefield:2016:PXM,
author = "Matthew J. Wakefield",
title = "\pkg{Xenomapper}: Mapping reads in a mixed species
context",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "1",
pages = "18:1--18:1",
month = may,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00018",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00018",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 May 2016",
ORCID-numbers = "Matthew J. Wakefield / 0000-0001-6624-4698",
}
@Article{Hickey:2016:RMG,
author = "Peter F. Hickey",
title = "Representation and Manipulation of Genomic Tuples in
{R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "1",
pages = "20:1--20:1",
month = may,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00020",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00020",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 May 2016",
ORCID-numbers = "Peter F. Hickey / 0000-0002-8153-6258",
}
@Article{Tauber:2016:PPP,
author = "J. K. Tauber",
title = "\pkg{pyuca}: a {Python} implementation of the {Unicode
Collation Algorithm}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "1",
pages = "21:1--21:1",
month = may,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00021",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib;
https://www.math.utah.edu/pub/tex/bib/unicode.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00021",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 May 2016",
ORCID-numbers = "J. K. Tauber / 0000-0001-6534-8866",
}
@Article{Balhoff:2016:PSS,
author = "James P. Balhoff",
title = "\pkg{Scowl}: a {Scala DSL} for programming with the
{OWL API}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "1",
pages = "23:1--23:1",
month = may,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00023",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00023",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "31 May 2016",
ORCID-numbers = "James P. Balhoff / 0000-0002-8688-6599",
}
@Article{Foreman-Mackey:2016:PCP,
author = "Daniel Foreman-Mackey",
title = "\pkg{corner.py}: Scatterplot matrices in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "2",
pages = "24:1--24:2",
month = jun,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00024",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00024",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 June 2016",
ORCID-numbers = "Daniel Foreman-Mackey / 0000-0002-9328-5652",
}
@Article{Sloan:2016:PGF,
author = "Zachary Sloan and Danny Arends and Karl W. Broman and
Arthur Centeno and Nicholas Furlotte and Harm Nijveen
and Lei Yan and Xiang Zhou and Robert W. Williams and
Pjotr Prins",
title = "\pkg{GeneNetwork}: framework for web-based genetics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "2",
pages = "25:1--25:3",
month = jun,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00025",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00025",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "17 June 2016",
ORCID-numbers = "Zachary Sloan / 0000-0002-8099-1363; Danny Arends /
0000-0001-8738-0162; Karl W. Broman /
0000-0002-4914-6671; Arthur Centeno /
0000-0003-3142-2081; Nicholas Furlotte /
0000-0002-9096-6276; Harm Nijveen /
0000-0002-9167-4945; Lei Yan / 0000-0001-5259-3379;
Xiang Zhou / 0000-0002-4331-7599; Robert W. Williams /
0000-0001-8924-4447; Pjotr Prins /
0000-0002-8021-9162",
}
@Article{Sanderson:2016:PAT,
author = "Conrad Sanderson and Ryan Curtin",
title = "\pkg{Armadillo}: a template-based {C++} library for
linear algebra",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "2",
pages = "26:1--26:2",
month = jun,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00026",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00026",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "10 June 2016",
ORCID-numbers = "Conrad Sanderson / 0000-0002-0049-4501; Ryan Curtin /
0000-0002-9903-8214",
}
@Article{Greenhill:2016:PPP,
author = "Simon J. Greenhill",
title = "\pkg{Phylogemetric}: A {Python} library for
calculating phylogenetic network metrics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "2",
pages = "28:1--28:1",
month = jun,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00028",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00028",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 June 2016",
ORCID-numbers = "Simon J. Greenhill / 0000-0001-7832-6156",
}
@Article{Jacobs:2016:PGR,
author = "Christian T. Jacobs and Alexandros Avdis",
title = "\pkg{Git-RDM}: A research data management plugin for
the {Git} version control system",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "2",
pages = "29:1--29:2",
month = jun,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00029",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00029",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 June 2016",
ORCID-numbers = "Christian T. Jacobs / 0000-0002-0034-4650; Alexandros
Avdis / 0000-0002-2695-3358",
}
@Article{Madan:2016:PPM,
author = "Christopher R. Madan",
title = "\pkg{Prism}: Multiple spline regression with
regularization, dimensionality reduction, and feature
selection",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "3",
pages = "31:1--31:3",
month = jul,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00031",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00031",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "01 July 2016",
ORCID-numbers = "Christopher R. Madan / 0000-0003-3228-6501",
}
@Article{Madnani:2016:PRC,
author = "Nitin Madnani and Anastassia Loukina",
title = "\pkg{RSMTool}: collection of tools building and
evaluating automated scoring models",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "3",
pages = "33:1--33:1",
month = jul,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00033",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00033",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 July 2016",
ORCID-numbers = "Nitin Madnani / 0000-0001-9354-6851; Anastassia
Loukina / 0000-0002-8213-3362",
}
@Article{Levy:2016:PGI,
author = "Michael A. Levy",
title = "\pkg{gwdegree}: Improving interpretation of
geometrically-weighted degree estimates in exponential
random graph models",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "3",
pages = "36:1--36:1",
month = jul,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00036",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00036",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "13 July 2016",
ORCID-numbers = "Michael A. Levy / 0000-0002-4188-2527",
}
@Article{Silge:2016:PTT,
author = "Julia Silge and David Robinson",
title = "\pkg{tidytext}: Text Mining and Analysis Using Tidy
Data Principles in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "3",
pages = "37:1--37:3",
month = jul,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00037",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00037",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 July 2016",
ORCID-numbers = "Julia Silge / 0000-0002-3671-836X; David Robinson /
0000-0001-8466-088X",
}
@Article{Frost:2016:PGJ,
author = "Simon D. W. Frost",
title = "\pkg{Gillespie.jl}: Stochastic Simulation Algorithm in
{Julia}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "3",
pages = "42:1--42:1",
month = jul,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00042",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00042",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 July 2016",
ORCID-numbers = "Simon DW Frost / 0000-0002-5207-9879",
}
@Article{Cuckovic:2016:AVA,
author = "Zoran Cuckovic",
title = "Advanced viewshed analysis: a Quantum {GIS} plug-in
for the analysis of visual landscapes",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "4",
pages = "32:1--32:3",
month = aug,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00032",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00032",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 August 2016",
ORCID-numbers = "Zoran Cuckovic / 0000-0001-7626-4086",
}
@Article{Bogutzky:2016:PPS,
author = "Simon Bogutzky and Jan Christoph Schrader and Nassrin
Hajinejad and Barbara Gr{\"u}ter",
title = "\pkg{PsychoPhysioCollector}: A Smartphone-Based Data
Collection App for Psychophysiological Research",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "4",
pages = "40:1--40:3",
month = aug,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00040",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00040",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 August 2016",
ORCID-numbers = "Simon Bogutzky / 0000-0002-9279-6549",
}
@Article{Cooper:2016:PPP,
author = "Christopher D. Cooper and Natalia C. Clementi and
Gilbert Forsyth and Lorena A. Barba",
title = "\pkg{PyGBe}: {Python}, {GPUs} and Boundary elements
for biomolecular electrostatics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "4",
pages = "43:1--43:1",
month = aug,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00043",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00043",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 August 2016",
ORCID-numbers = "Christopher D. Cooper / 0000-0003-0282-8998; Natalia
C. Clementi / 0000-0002-0575-5520; Gilbert Forsyth /
0000-0002-4983-1978; Lorena A. Barba /
0000-0001-5812-2711",
}
@Article{Hinton:2016:PC,
author = "Samuel Hinton",
title = "\pkg{ChainConsumer}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "4",
pages = "45:1--45:2",
month = aug,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00045",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00045",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 August 2016",
ORCID-numbers = "Samuel Hinton / 0000-0003-2071-9349",
}
@Article{Vitolo:2016:PRI,
author = "Claudia Vitolo and Andrew Russell and Allan Tucker",
title = "\pkg{rdefra}: Interact with the {UK AIR Pollution
Database} from {DEFRA}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "4",
pages = "51:1--51:2",
month = aug,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00051",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00051",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 August 2016",
ORCID-numbers = "Claudia Vitolo / 0000-0002-4252-1176; Andrew Russell
/ 0000-0001-7120-8499; Allan Tucker /
0000-0001-5105-3506",
}
@Article{Giraud:2016:PCC,
author = "Timoth{\'e}e Giraud and Nicolas Lambert",
title = "\pkg{cartography}: Create and Integrate Maps in your
{R} Workflow",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "4",
pages = "54:1--54:2",
month = aug,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00054",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00054",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 August 2016",
ORCID-numbers = "Timoth{\'e}e Giraud / 0000-0002-1932-3323",
}
@Article{Brown:2016:PSL,
author = "C. Titus Brown and Luiz Irber",
title = "\pkg{sourmash}: a library for {MinHash} sketching of
{DNA}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "5",
pages = "27:1--27:1",
month = sep,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00027",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00027",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 September 2016",
ORCID-numbers = "C. Titus Brown / 0000-0001-6001-2677; Luiz Irber /
0000-0003-4371-9659",
}
@Article{McGibbon:2016:POH,
author = "Robert T. McGibbon and Carlos X. Hern{\'a}ndez and
Matthew P. Harrigan and Steven Kearnes and Mohammad
M. Sultan and Stanis{\l}aw Jastrzebski and Brooke
E. Husic and Vijay S. Pande",
title = "\pkg{Osprey}: Hyperparameter Optimization for Machine
Learning",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "5",
pages = "34:1--34:2",
month = sep,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00034",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00034",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 September 2016",
ORCID-numbers = "Carlos X. Hern{\'a}ndez / 0000-0002-8146-5904",
}
@Article{Bogutzky:2016:PPP,
author = "Simon Bogutzky and Phillip Marsch and Lic{\'\i}nio
Roque and Nassrin Hajinejad and Barbara Gr{\"u}ter",
title = "\pkg{PsychoPhysioPipeline}: A Processing and Analysis
Pipeline for Psychophysiological Research",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "5",
pages = "41:1--41:3",
month = sep,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00041",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00041",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 September 2016",
ORCID-numbers = "Simon Bogutzky / 0000-0002-9279-6549",
}
@Article{Eddelbuettel:2016:PRR,
author = "Dirk Eddelbuettel and Wush Wu",
title = "\pkg{RcppCNPy}: Read-Write Support for {NumPy} Files
in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "5",
pages = "55:1--55:1",
month = sep,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00055",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00055",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "25 September 2016",
ORCID-numbers = "Dirk Eddelbuettel / 0000-0001-6419-907X; Wush Wu /
0000-0001-5180-0567",
}
@Article{Michaels:2016:PHR,
author = "Jonathan A. Michaels and Hansj{\"o}rg Scherberger",
title = "\pkg{hebbRNN}: A Reward-Modulated {Hebbian} Learning
Rule for Recurrent Neural Networks",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "5",
pages = "60:1--60:2",
month = sep,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00060",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00060",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "23 September 2016",
ORCID-numbers = "Jonathan A. Michaels / 0000-0002-5179-3181;
Hansj{\"o}rg Scherberger / 0000-0001-6593-2800",
}
@Article{Attali:2016:PEA,
author = "Dean Attali",
title = "\pkg{ezknitr}: Avoid the Typical Working Directory
Pain When Using `\pkg{knitr}'",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "5",
pages = "75:1--75:1",
month = sep,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00075",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00075",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 September 2016",
ORCID-numbers = "Dean Attali / 0000-0002-5645-3493",
}
@Article{Constantine:2016:PPA,
author = "Paul Constantine and Ryan Howard and Andrew Glaws and
Zachary Grey and Paul Diaz and Leslie Fletcher",
title = "\pkg{Python} Active-subspaces Utility Library",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "5",
pages = "79:1--79:1",
month = sep,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00079",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00079",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 September 2016",
ORCID-numbers = "Paul Constantine / 0000-0003-3726-6307",
}
@Article{Makela:2016:PIL,
author = "Eetu M{\"a}kel{\"a}",
title = "\pkg{LAS}: an integrated language analysis tool for
multiple languages",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "6",
pages = "35:1--35:2",
month = oct,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00035",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00035",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 October 2016",
ORCID-numbers = "Eetu M{\"a}kel{\"a} / 0000-0002-8366-8414",
}
@Article{Bocquet:2016:PPB,
author = "Sebastian Bocquet and Faustin W. Carter",
title = "\pkg{pygtc}: beautiful parameter covariance plots
(aka. Giant Triangle Confusograms)",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "6",
pages = "46:1--46:3",
month = oct,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00046",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00046",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 October 2016",
ORCID-numbers = "Sebastian Bocquet / 0000-0002-4900-805X; Faustin W.
Carter / 0000-0002-1236-3517",
}
@Article{Barbary:2016:PSS,
author = "Kyle Barbary",
title = "\pkg{SEP}: Source Extractor as a library",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "6",
pages = "58:1--58:2",
month = oct,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00058",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00058",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 October 2016",
ORCID-numbers = "Kyle Barbary / 0000-0002-2532-3696",
}
@Article{Ganz:2016:PRW,
author = "Carl Ganz",
title = "\pkg{rintrojs}: A Wrapper for the \pkg{Intro.js}
Library",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "6",
pages = "63:1--63:1",
month = oct,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00063",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00063",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 October 2016",
ORCID-numbers = "Carl Ganz / 0000-0002-2973-3545",
}
@Article{Page:2016:PGP,
author = "Andrew J. Page and Sascha Steinbiss and Ben Taylor and
Torsten Seemann and Jacqueline A. Keane",
title = "\pkg{GFF3toEMBL}: Preparing annotated assemblies for
submission to {EMBL}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "6",
pages = "80:1--80:1",
month = oct,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00080",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00080",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 October 2016",
ORCID-numbers = "Andrew J. Page / 0000-0001-6919-6062; Sascha
Steinbiss / 0000-0002-2151-0574; Torsten Seemann /
0000-0001-6046-610X; Jacqueline A. Keane /
0000-0002-2021-1863",
}
@Article{Theodoropoulos:2016:PHT,
author = "Christos Theodoropoulos and Nikolaos Skoulikidis and
Anastasios Stamou",
title = "\pkg{Habfuzz}: A tool to calculate the instream
hydraulic habitat suitability using fuzzy logic and
fuzzy {Bayesian} inference",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "6",
pages = "82:1--82:2",
month = oct,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00082",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00082",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 October 2016",
ORCID-numbers = "Christos Theodoropoulos / 0000-0002-5395-0347",
}
@Article{Holtgrewe:2016:PVP,
author = "Manuel Holtgrewe and Dieter Beule",
title = "\pkg{VCFPy}: a {Python 3} library with good support
for both reading and writing {VCF}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "6",
pages = "85:1--85:1",
month = oct,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00085",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00085",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "25 October 2016",
ORCID-numbers = "Manuel Holtgrewe / 0000-0002-3051-1763; Dieter Beule
/ 0000-0002-3284-0632",
}
@Article{Arends:2016:CTL,
author = "Danny Arends and Yang Li and Gudrun A. Brockmann and
Ritsert C. Jansen and Robert W. Williams and Pjotr
Prins",
title = "Correlation Trait Loci {(CTL)} mapping: phenotype
network inference subject to genotype",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "6",
pages = "87:1--87:4",
month = oct,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00087",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00087",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 October 2016",
ORCID-numbers = "Danny Arends / 0000-0001-8738-0162; Yang Li /
0000-0003-4022-7341; Gudrun A. Brockmann /
0000-0002-4387-2947; Ritsert C. Jansen /
0000-0003-2977-9110; Robert W. Williams /
0000-0001-8924-4447; Pjotr Prins /
0000-0002-8021-9162",
}
@Article{Jones:2016:PEE,
author = "Zachary M. Jones and Fridolin J. Linder",
title = "\pkg{edarf}: {Exploratory Data Analysis using Random
Forests}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "6",
pages = "92:1--92:4",
month = oct,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00092",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00092",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "23 October 2016",
ORCID-numbers = "Zachary M. Jones / 0000-0002-7523-0471; Fridolin J.
Linder / 0000-0002-0499-0676",
}
@Article{Germonprez:2016:PDS,
author = "Matt Germonprez and Thomas Gurney and Sai Uday Shankar
Korlimarla and Robin Gandhi",
title = "\pkg{DoSOCS}: A System for \pkg{SPDX 2.0} Document
Creation and Storage",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "7",
pages = "38:1--38:1",
month = nov,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00038",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00038",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 November 2016",
ORCID-numbers = "Matt Germonprez / 0000-0003-2326-5901",
}
@Article{Hernandez:2016:PXP,
author = "Guillermo Hern{\'a}ndez and Francisco Fern{\'a}ndez",
title = "\pkg{xpecgen}: A program to calculate {X}-ray spectra
generated in tungsten anodes",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "7",
pages = "62:1--62:2",
month = nov,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00062",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00062",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 November 2016",
ORCID-numbers = "Guillermo Hern{\'a}ndez / 0000-0002-7481-5961;
Francisco Fern{\'a}ndez / 0000-0002-3732-3415",
}
@Article{Boersch-Supan:2016:PRF,
author = "Philipp H. Boersch-Supan",
title = "\pkg{rucrdtw}: Fast time series subsequence search in
{R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "7",
pages = "100:1--100:2",
month = nov,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00100",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00100",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 November 2016",
ORCID-numbers = "Philipp H. Boersch-Supan / 0000-0001-6723-6833",
}
@Article{Hughes:2016:PPR,
author = "Sean M. Hughes",
title = "\pkg{plater}: Read, Tidy, and Display Data from
Microtiter Plates",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "7",
pages = "106:1--106:1",
month = nov,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00106",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00106",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 November 2016",
ORCID-numbers = "Sean M. Hughes / 0000-0002-9409-9405",
}
@Article{Warren:2016:PRP,
author = "Rene L. Warren",
title = "\pkg{RAILS} and \pkg{Cobbler}: Scaffolding and
automated finishing of draft genomes using long {DNA}
sequences",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "7",
pages = "116:1--116:2",
month = nov,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00116",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00116",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "17 November 2016",
ORCID-numbers = "Rene L. Warren / 0000-0002-9890-2293",
}
@Article{Raab:2016:PEU,
author = "Markus Raab",
title = "\pkg{Elektra}: universal framework to access
configuration parameters",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "44:1--44:2",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00044",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00044",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 December 2016",
ORCID-numbers = "Markus Raab / 0000-0002-1493-9065",
}
@Article{VanHorn:2016:PMY,
author = "Nicholas M. {Van Horn} and Aaron Beveridge",
title = "\pkg{MassMine}: Your Access To Data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "50:1--50:1",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00050",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00050",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 December 2016",
ORCID-numbers = "Nicholas M. Van Horn / 0000-0002-0695-7765; Aaron
Beveridge / 0000-0002-5156-3044",
}
@Article{Vitolo:2016:PFR,
author = "Claudia Vitolo and Peter Wells and Martin Dobias and
Wouter Buytaert",
title = "\pkg{fuse}: An {R} package for ensemble Hydrological
Modelling",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "52:1--52:2",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00052",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00052",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 December 2016",
ORCID-numbers = "Claudia Vitolo / 0000-0002-4252-1176; Wouter Buytaert
/ 0000-0001-6994-4454",
}
@Article{Honorato:2016:PCP,
author = "Rodrigo V. Honorato",
title = "\pkg{CAZy-parser} a way to extract information from
the {Carbohydrate-Active enZYmes} Database",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "53:1--53:1",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00053",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00053",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 December 2016",
ORCID-numbers = "Rodrigo V. Honorato / 0000-0001-5267-3002",
}
@Article{Ponge:2016:EG,
author = "Julien Ponge and Yannick Loiseau and Fr{\'e}d{\'e}ric
{Le Mou{\"e}l} and Nicolas Stouls and Philippe
Charri{\`e}re and Daniel Petisme and Sylvain Desgrais
and Franck Verrot",
title = "{Eclipse} {Golo}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "93:1--93:1",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00093",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00093",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "01 December 2016",
ORCID-numbers = "Julien Ponge / 0000-0003-3452-9183",
}
@Article{DeSimone:2016:PPP,
author = "Kevin DeSimone and Ariel Rokem and Keith Schneider",
title = "\pkg{popeye}: a population receptive field estimation
tool",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "103:1--103:1",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00103",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00103",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "01 December 2016",
ORCID-numbers = "Kevin DeSimone / 0000-0003-4254-9408; Ariel Rokem /
0000-0003-0679-1985; Keith Schneider /
0000-0001-7120-3380",
}
@Article{Rampin:2016:PRR,
author = "R{\'e}mi Rampin and Fernando Chirigati and Dennis
Shasha and Juliana Freire and Vicky Steeves",
title = "\pkg{ReproZip}: The Reproducibility Packer",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "107:1--107:3",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00107",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00107",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "01 December 2016",
ORCID-numbers = "R{\'e}mi Rampin / 0000-0002-0524-2282; Fernando
Chirigati / 0000-0002-9566-5835; Dennis Shasha /
0000-0002-7036-3312; Juliana Freire /
0000-0003-3915-7075; Vicky Steeves /
0000-0003-4298-168X",
}
@Article{Wakefield:2016:PSI,
author = "Matthew J. Wakefield",
title = "\pkg{SurvivalVolume}: interactive volume threshold
survival graphs",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "111:1--111:2",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00111",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00111",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 December 2016",
ORCID-numbers = "Matthew J. Wakefield / 0000-0001-6624-4698",
}
@Article{Page:2016:MST,
author = "Andrew J. Page and Ben Taylor and Jacqueline A.
Keane",
title = "Multilocus sequence typing by blast from de novo
assemblies against {PubMLST}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "118:1--118:2",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00118",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00118",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 December 2016",
ORCID-numbers = "Andrew J. Page / 0000-0001-6919-6062; Jacqueline A.
Keane / 0000-0002-2021-1863",
}
@Article{Lee:2016:PFF,
author = "Seward Lee",
title = "\pkg{finreportr}: Financial Data from {U.S. Securities
and Exchange Commission}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "119:1--119:1",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00119",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00119",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 December 2016",
ORCID-numbers = "Seward Lee / 0000-0001-5583-035X",
}
@Article{McFee:2016:PRE,
author = "Brian McFee",
title = "\pkg{resampy}: efficient sample rate conversion in
{Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "125:1--125:1",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00125",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00125",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 December 2016",
ORCID-numbers = "Brian McFee / 0000-0001-6261-9747",
}
@Article{Goldsmith:2016:PVC,
author = "Jeff Goldsmith",
title = "\pkg{vbvs.concurrent}: Fitting Methods for the
Functional Linear Concurrent Model",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "1",
number = "8",
pages = "141:1--141:1",
month = dec,
year = "2016",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00141",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00141",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 December 2016",
ORCID-numbers = "Jeff Goldsmith / 0000-0002-6150-8997",
}
@Article{Vitolo:2017:PHH,
author = "Claudia Vitolo",
title = "\pkg{hddtools}: Hydrological Data Discovery Tools",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "9",
pages = "56:1--56:2",
month = jan,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00056",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00056",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 January 2017",
ORCID-numbers = "Claudia Vitolo / 0000-0002-4252-1176",
}
@Article{Kearney:2017:PEM,
author = "Kelly A. Kearney",
title = "\pkg{ecopath\_matlab}: A {Matlab}-based implementation
of the {Ecopath} food web algorithm",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "9",
pages = "64:1--64:2",
month = jan,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00064",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00064",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 January 2017",
}
@Article{Halterman:2017:PMF,
author = "Andrew Halterman",
title = "\pkg{Mordecai}: Full Text Geoparsing and Event
Geocoding",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "9",
pages = "91:1--91:1",
month = jan,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00091",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00091",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 January 2017",
ORCID-numbers = "Andrew Halterman / 0000-0001-9716-9555",
}
@Article{Herman:2017:PSO,
author = "Jon Herman and Will Usher",
title = "\pkg{SALib}: An open-source {Python} library for
Sensitivity Analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "9",
pages = "97:1--97:2",
month = jan,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00097",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00097",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "10 January 2017",
ORCID-numbers = "Jon Herman / 0000-0002-4081-3175; Will Usher /
0000-0001-9367-1791",
}
@Article{Norris:2017:PPA,
author = "Clayton Norris and Philip Schrodt and John Beieler",
title = "\pkg{PETRARCH2}: Another Event Coding Program",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "9",
pages = "133:1--133:1",
month = jan,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00133",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00133",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 January 2017",
ORCID-numbers = "Clayton Norris / 0000-0001-5907-757X; Philip Schrodt
/ 0000-0003-3495-4198; John Beieler /
0000-0001-7811-4399",
}
@Article{Naecker:2017:PPP,
author = "Benjamin Naecker and Niru Maheswaranathan and Surya
Ganguli and Stephen Baccus",
title = "\pkg{Pyret}: A {Python} package for analysis of
neurophysiology data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "9",
pages = "137:1--137:1",
month = jan,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00137",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00137",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 January 2017",
ORCID-numbers = "Benjamin Naecker / 0000-0002-7525-1635; Niru
Maheswaranathan / 0000-0002-3946-4705",
}
@Article{Jensen:2017:POA,
author = "Kristian Jensen and Joao G. R. Cardoso and Nikolaus
Sonnenschein",
title = "\pkg{Optlang}: An algebraic modeling language for
mathematical optimization",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "9",
pages = "139:1--139:1",
month = jan,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00139",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00139",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 January 2017",
ORCID-numbers = "Kristian Jensen / 0000-0002-2796-805X; Joao G. R.
Cardoso / 0000-0001-8173-2673; Nikolaus Sonnenschein /
0000-0002-7581-4936",
}
@Article{Scott:2017:PSI,
author = "Camille Scott",
title = "\pkg{shmlast}: An improved implementation of
Conditional Reciprocal Best Hits with {LAST} and
{Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "9",
pages = "142:1--142:4",
month = jan,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00142",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00142",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 January 2017",
ORCID-numbers = "Camille Scott / 0000-0001-8822-8779",
}
@Article{Alexandre:2017:PLM,
author = "Eduardo S. M. Alexandre",
title = "\pkg{Limarka}: making possible {Brazilian} students
writing dissertation and thesis with {Markdown}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "9",
pages = "169:1--169:1",
month = jan,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00169",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00169",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 January 2017",
ORCID-numbers = "Eduardo S. M. Alexandre / 0000-0002-9165-9438",
}
@Article{Lang:2017:PBT,
author = "Michel Lang and Bernd Bischl and Dirk Surmann",
title = "\pkg{batchtools}: Tools for {R} to work on batch
systems",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "135:1--135:2",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00135",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00135",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 February 2017",
ORCID-numbers = "Michel Lang / 0000-0001-9754-0393; Bernd Bischl /
0000-0001-6002-6980; Dirk Surmann /
0000-0003-0873-137X",
}
@Article{Hazelton:2017:PPI,
author = "Bryna J. Hazelton and Daniel C. Jacobs and Jonathan C.
Pober and Adam P. Beardsley",
title = "\pkg{pyuvdata}: an interface for astronomical
interferometeric datasets in python",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "140:1--140:1",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00140",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00140",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 February 2017",
ORCID-numbers = "Bryna J. Hazelton / 0000-0001-7532-645X; Daniel C.
Jacobs / 0000-0002-0917-2269; Jonathan C. Pober /
0000-0002-3492-0433; Adam P. Beardsley /
0000-0001-9428-8233",
}
@Article{McCormick:2017:PSS,
author = "Matthew M. McCormick and Mark L. Palmeri and
Jean-Christophe Fillion-Robin and Stephen Aylward",
title = "\pkg{SlicerITKUltrasound}: A {$3$D} Slicer extension
for scan conversion of {B}-mode and next-generation
ultrasound imaging modalities",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "153:1--153:1",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00153",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00153",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "13 February 2017",
ORCID-numbers = "Matthew M. McCormick / 0000-0001-9475-3756; Mark L.
Palmeri / 0000-0001-8995-0050",
}
@Article{Ghoshal:2017:PFF,
author = "Devarshi Ghoshal and Valerie Hendrix and William Fox
and Sowmya Balasubhramanian and Lavanya Ramakrishnan",
title = "\pkg{FRIEDA}: Flexible Robust Intelligent Elastic Data
Management Framework",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "164:1--164:3",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00164",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00164",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 February 2017",
ORCID-numbers = "Devarshi Ghoshal / 0000-0002-6819-6949; Valerie
Hendrix / 0000-0001-9061-8952; William Fox /
0000-0003-1751-5118; Sowmya Balasubhramanian /
0000-0003-1312-9092; Lavanya Ramakrishnan /
0000-0003-1761-4132",
}
@Article{Kortschak:2017:PBS,
author = "R. Daniel Kortschak and Josh Bleecher Snyder and
Manolis Maragkakis and David L. Adelson",
title = "\pkg{b{\'\i}ogo}: a simple high-performance
bioinformatics toolkit for the {Go} language",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "167:1--167:1",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00167",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00167",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 February 2017",
ORCID-numbers = "R Daniel Kortschak / 0000-0001-8295-2301; Josh
Bleecher Snyder / 0000-0001-8327-7643; Manolis
Maragkakis / 0000-0002-3158-1763; David L. Adelson /
0000-0003-2404-5636",
}
@Article{Kortschak:2017:PBH,
author = "R. Daniel Kortschak and Brent S. Pedersen and David L.
Adelson",
title = "\pkg{b{\'\i}ogo/hts}: high throughput sequence
handling for the {Go} language",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "168:1--168:1",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00168",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00168",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 February 2017",
ORCID-numbers = "R Daniel Kortschak / 0000-0001-8295-2301; Brent S.
Pedersen / 0000-0003-1786-2216; David L. Adelson /
0000-0003-2404-5636",
}
@Article{Boehmke:2017:PKR,
author = "Bradley C. Boehmke and Robert T. Montgomery and
Jeffrey A. Ogden and Jason K. Freels",
title = "\pkg{KraljicMatrix}: An {R} package for implementing
the {Kraljic Matrix} to strategically analyze a firm's
purchasing portfolio",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "170:1--170:2",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00170",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00170",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 February 2017",
ORCID-numbers = "Bradley C. Boehmke / 0000-0002-3611-8516",
}
@Article{Ardia:2017:PRC,
author = "David Ardia and Kris Boudt and Jean-Philippe
Gagnon-Fleury",
title = "\pkg{RiskPortfolios}: Computation of Risk-Based
Portfolios in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "171:1--171:1",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00171",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00171",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 February 2017",
ORCID-numbers = "David Ardia / 0000-0003-2823-782X",
}
@Article{Ardia:2017:PNC,
author = "David Ardia and Keven Bluteau",
title = "\pkg{nse}: Computation of Numerical Standard Errors in
{R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "172:1--172:2",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00172",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00172",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 February 2017",
ORCID-numbers = "David Ardia / 0000-0003-2823-782X",
}
@Article{Caravaggi:2017:PRR,
author = "Anthony Caravaggi",
title = "\pkg{remBoot}: An {R} package for Random Encounter
Modelling",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "176:1--176:3",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00176",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00176",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 February 2017",
ORCID-numbers = "Anthony Caravaggi / 0000-0002-1763-8970",
}
@Article{Sparks:2017:PGG,
author = "Adam H. Sparks and Tomislav Hengl and Andrew Nelson",
title = "\pkg{GSODR}: Global Summary Daily Weather Data in
{R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "10",
pages = "177:1--177:2",
month = feb,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00177",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00177",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 February 2017",
ORCID-numbers = "Adam H. Sparks / 0000-0002-0061-8359; Tomislav Hengl
/ 0000-0002-9921-5129; Andrew Nelson /
0000-0002-7249-3778",
}
@Article{Yao:2017:PWM,
author = "Andy Yu Zhu Yao and David Kane",
title = "\pkg{walkr}: {MCMC} Sampling from Non-Negative Convex
Polytopes",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "61:1--61:1",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00061",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00061",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 March 2017",
ORCID-numbers = "Andy Yu Zhu Yao / 0000-0003-3898-8782",
}
@Article{Seshadri:2017:PEQ,
author = "Pranay Seshadri and Geoffrey Parks",
title = "\pkg{Effective-Quadratures (EQ)}: Polynomials for
Computational Engineering Studies",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "166:1--166:2",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00166",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00166",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 March 2017",
ORCID-numbers = "Pranay Seshadri / 0000-0002-7351-012X; Geoffrey Parks
/ 0000-0001-8188-5047",
}
@Article{Niskanen:2017:PAT,
author = "Julia Niskanen and Elina Salmela and Hannes Lohi",
title = "\pkg{AncesTrim} --- a tool for trimming complex
pedigrees",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "179:1--179:1",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00179",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00179",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 March 2017",
ORCID-numbers = "Julia Niskanen / 0000-0002-2871-6890; Elina Salmela /
0000-0003-1326-4462; Hannes Lohi /
0000-0003-1087-5532",
}
@Article{deVal-Borro:2017:PCL,
author = "Miguel de Val-Borro and Martin A. Cordiner and
Stefanie N. Milam and Steven B. Charnley",
title = "\pkg{Cine}: Line excitation by infrared fluorescence
in cometary atmospheres",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "182:1--182:2",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00182",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00182",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 March 2017",
ORCID-numbers = "Miguel de Val-Borro / 0000-0002-0455-9384; Martin A.
Cordiner / 0000-0001-8233-2436; Stefanie N. Milam /
0000-0001-7694-4129",
}
@Article{Grieve:2017:PSE,
author = "Stuart W. D. Grieve",
title = "\pkg{spatial-efd}: A spatial-aware implementation of
elliptical {Fourier} analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "189:1--189:2",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00189",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00189",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 March 2017",
ORCID-numbers = "Stuart W. D. Grieve / 0000-0003-1893-7363",
}
@Article{Crabtree:2017:PPF,
author = "Charles Crabtree and Michael J. Nelson",
title = "\pkg{Plotrr}: Functions for making visual exploratory
data analysis with nested data easier",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "190:1--190:2",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00190",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00190",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 March 2017",
ORCID-numbers = "Charles Crabtree / 0000-0001-5144-8671; Michael J.
Nelson / 0000-0002-7665-7557",
}
@Article{Chamberlain:2017:PLR,
author = "Scott Chamberlain and Jeffrey W. Hollister",
title = "\pkg{lawn}: An {R} client for the {Turf Javascript
Library for Geospatial Analysis}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "194:1--194:1",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00194",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/java2010.bib;
https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00194",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 March 2017",
ORCID-numbers = "Scott Chamberlain / 0000-0003-1444-9135; Jeffrey W.
Hollister / 0000-0002-9254-9740",
}
@Article{Pastell:2017:PWJ,
author = "Matti Pastell",
title = "\pkg{Weave.jl}: Scientific Reports Using {Julia}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "204:1--204:1",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00204",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/litprog.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00204",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 March 2017",
ORCID-numbers = "Matti Pastell / 0000-0002-5810-4801",
}
@Article{McInnes:2017:PHH,
author = "Leland McInnes and John Healy and Steve Astels",
title = "\pkg{hdbscan}: Hierarchical density based clustering",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "205:1--205:2",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00205",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00205",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 March 2017",
ORCID-numbers = "Leland McInnes / 0000-0003-2143-6834",
}
@Article{Higgins:2017:PVF,
author = "Joshua Higgins and Violeta Holmes and Colin Venters",
title = "\pkg{VCC}: A framework for building containerized
reproducible cluster software environments",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "208:1--208:1",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00208",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00208",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 March 2017",
ORCID-numbers = "Joshua Higgins / 0000-0003-1551-5552; Violeta Holmes
/ 0000-0002-9786-4555",
}
@Article{Siu:2017:PRP,
author = "Chapman Siu",
title = "\pkg{Ramble}: Parser Combinator for {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "11",
pages = "209:1--209:1",
month = mar,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00209",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00209",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 March 2017",
ORCID-numbers = "Chapman Siu / 0000-0002-2089-3796",
}
@Article{Carpi:2017:PEO,
author = "Nicolas Carpi and Alexander Minges and Matthieu
Piel",
title = "\pkg{eLabFTW}: An open source laboratory notebook for
research labs",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "12",
pages = "146:1--146:1",
month = apr,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00146",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00146",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 April 2017",
ORCID-numbers = "Nicolas CARPi / 0000-0002-7494-5555; Alexander Minges
/ 0000-0001-7760-2753; Matthieu Piel /
0000-0002-2848-177X",
}
@Article{Hernandez:2017:PMD,
author = "Carlos X. Hern{\'a}ndez and Matthew P. Harrigan and
Mohammad M. Sultan and Vijay S. Pande",
title = "\pkg{MSMExplorer}: Data Visualizations for
Biomolecular Dynamics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "12",
pages = "188:1--188:2",
month = apr,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00188",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00188",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 April 2017",
ORCID-numbers = "Carlos X. Hern{\'a}ndez / 0000-0002-8146-5904;
Matthew P. Harrigan / 0000-0001-9412-0553; Mohammad M.
Sultan / 0000-0001-5578-6328",
}
@Article{Cortale:2017:PSE,
author = "Nicholas Cortale and Dylan McNamara",
title = "\pkg{skedm}: Empirical Dynamic Modeling",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "12",
pages = "207:1--207:2",
month = apr,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00207",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00207",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 April 2017",
ORCID-numbers = "Nicholas Cortale / 0000-0003-2262-663X; Dylan
McNamara / 0000-0001-8752-1586",
}
@Article{Boeing:2017:POP,
author = "Geoff Boeing",
title = "\pkg{OSMnx}: A {Python} package to work with
graph-theoretic {OpenStreetMap} street networks",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "12",
pages = "215:1--215:4",
month = apr,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00215",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00215",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "24 April 2017",
ORCID-numbers = "Geoff Boeing / 0000-0003-1851-6411",
}
@Article{Sparks:2017:PGU,
author = "Adam H. Sparks",
title = "\pkg{getCRUCLdata}: Use and Explore \pkg{CRU CL} v.
2.0 Climatology Elements in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "12",
pages = "230:1--230:1",
month = apr,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00230",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00230",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 April 2017",
ORCID-numbers = "Adam H. Sparks / 0000-0002-0061-8359",
}
@Article{Mutel:2017:PBO,
author = "Chris Mutel",
title = "\pkg{Brightway}: An open source framework for Life
Cycle Assessment",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "12",
pages = "236:1--236:2",
month = apr,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00236",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00236",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 April 2017",
ORCID-numbers = "Chris Mutel / 0000-0002-7898-9862",
}
@Article{Willner:2017:PPP,
author = "Sven N. Willner and Corinne Hartin and Robert
Gieseke",
title = "\pkg{pyhector}: A {Python} interface for the simple
climate model {Hector}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "12",
pages = "248:1--248:2",
month = apr,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00248",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00248",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 April 2017",
ORCID-numbers = "Sven N. Willner / 0000-0001-6798-6247; Corinne Hartin
/ 0000-0003-1834-6539; Robert Gieseke /
0000-0002-1236-5109",
}
@Article{Weisenburger:2017:PAA,
author = "Kolby L. Weisenburger and Joseph Huehnerhoff and Emily
M. Levesque and Philip Massey",
title = "\pkg{acronym}: An Automatic Reduction Pipeline for
Astronomical Images",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "102:1--102:2",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00102",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00102",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "02 May 2017",
ORCID-numbers = "Kolby L. Weisenburger / 0000-0002-4639-1436",
}
@Article{Kamppi:2017:PKG,
author = "Antti Kamppi and Esko Pekkarinen and Janne Virtanen
and Joni-Matti M{\"a}{\"a}tt{\"a} and Juho J{\"a}rvinen
and Lauri Matilainen and Mikko Teuho and Timo
D. H{\"a}m{\"a}l{\"a}inen",
title = "\pkg{Kactus2}: A graphical {EDA} tool built on the
{IP-XACT} standard",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "151:1--151:1",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00151",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00151",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "02 May 2017",
}
@Article{Boehmke:2017:PLI,
author = "Bradley C. Boehmke and Jason K. Freels",
title = "\pkg{learningCurve}: An implementation of {Crawford}'s
and {Wright}'s learning curve production functions",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "202:1--202:1",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00202",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00202",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "01 May 2017",
ORCID-numbers = "Bradley C. Boehmke / 0000-0002-3611-8516",
}
@Article{Romano:2017:PY,
author = "Luca Romano",
title = "\pkg{YoungTab}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "221:1--221:1",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00221",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00221",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 May 2017",
ORCID-numbers = "Luca Romano / 0000-0001-9033-1345",
}
@Article{Gerosa:2017:PFA,
author = "Davide Gerosa and Michele Vallisneri",
title = "\pkg{filltex}: Automatic queries to {ADS} and
{INSPIRE} databases to fill {LaTex} bibliography",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "222:1--222:1",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00222",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00222",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "02 May 2017",
ORCID-numbers = "Davide Gerosa / 0000-0002-0933-3579; Michele
Vallisneri / 0000-0002-4162-0033",
}
@Article{Rognes:2017:PCA,
author = "Marie E. Rognes and Patrick E. Farrell and Simon W.
Funke and Johan E. Hake and Molly M. C. Maleckar",
title = "\pkg{cbcbeat}: an adjoint-enabled framework for
computational cardiac electrophysiology",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "224:1--224:1",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00224",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00224",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "31 May 2017",
ORCID-numbers = "Marie E. Rognes / 0000-0002-6872-3710; Simon W. Funke
/ 0000-0003-4709-8415; Johan E. Hake /
0000-0002-4042-0128; Molly M. C. Maleckar /
0000-0002-7012-3853",
}
@Article{Tushar:2017:PFI,
author = "Abhinav Tushar and Nicholas G. Reich",
title = "\pkg{flusight}: interactive visualizations for
infectious disease forecasts",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "231:1--231:2",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00231",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00231",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "10 May 2017",
ORCID-numbers = "Abhinav Tushar / 0000-0001-7137-0728; Nicholas G.
Reich / 0000-0003-3503-9899",
}
@Article{Murray:2017:PLC,
author = "Kevin D. Murray and Justin O. Borevitz",
title = "\pkg{libqcpp}: A {C++14} sequence quality control
library",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "232:1--232:1",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00232",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00232",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 May 2017",
ORCID-numbers = "Kevin D. Murray / 0000-0002-2466-1917; Justin O.
Borevitz / 0000-0001-8408-3699",
}
@Article{Page:2017:PSF,
author = "Andrew J. Page and Martin Hunt and Torsten Seemann and
Jacqueline A. Keane",
title = "\pkg{SaffronTree}: Fast, reference-free
pseudo-phylogenomic trees from reads or contigs",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "243:1--243:2",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00243",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00243",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 May 2017",
ORCID-numbers = "Andrew J. Page / 0000-0001-6919-6062; Martin Hunt /
0000-0002-8060-4335; Torsten Seemann /
0000-0001-6046-610X; Jacqueline A. Keane /
0000-0002-2021-1863",
}
@Article{Mutel:2017:PPG,
author = "Chris Mutel",
title = "\pkg{Pandarus}: {GIS} toolkit for regionalized life
cycle assessment",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "244:1--244:1",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00244",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00244",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 May 2017",
ORCID-numbers = "Chris Mutel / 0000-0002-7898-9862",
}
@Article{Morgan:2017:PLP,
author = "Benjamin J. Morgan",
title = "\pkg{lattice\_mc}: A {Python} Lattice-Gas {Monte
Carlo} Module",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "247:1--247:2",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00247",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00247",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 May 2017",
ORCID-numbers = "Benjamin J. Morgan / 0000-0002-3056-8233",
}
@Article{Hope:2017:PIM,
author = "Gaute Hope",
title = "\pkg{{IBCAO\_py}:} A matplotlib library for using the
International Bathymetric Chart of the Arctic Ocean
with cartopy and matplotlib",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "250:1--250:2",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00250",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00250",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 May 2017",
ORCID-numbers = "Gaute Hope / 0000-0002-5653-1447",
}
@Article{Howard:2017:VBA,
author = "James P. {Howard II}",
title = "Virtual Bumblebees Artificial Life Simulation",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "256:1--256:1",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00256",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00256",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 May 2017",
ORCID-numbers = "James P. Howard II / 0000-0003-4530-1547",
}
@Article{Mayer:2017:PNP,
author = "Andreas Mayer",
title = "\pkg{Noisyopt}: A {Python} library for optimizing
noisy functions",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "258:1--258:1",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00258",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00258",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 May 2017",
ORCID-numbers = "Andreas Mayer / 0000-0002-6643-7622",
}
@Article{Light:2017:PMS,
author = "Roger A. Light",
title = "\pkg{Mosquitto}: server and client implementation of
the {MQTT} protocol",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "13",
pages = "265:1--265:2",
month = may,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00265",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00265",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 May 2017",
ORCID-numbers = "Roger A. Light / 0000-0001-9218-7797",
}
@Article{Anderson:2017:PS,
author = "Sean M. Anderson and Bernardo S. Mendoza",
title = "\pkg{SHGYield}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "14",
pages = "242:1--242:2",
month = jun,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00242",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00242",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 June 2017",
ORCID-numbers = "Sean M. Anderson / 0000-0002-4809-921X; Bernardo S.
Mendoza / 0000-0002-8546-0262",
}
@Article{Didion:2017:PXE,
author = "John P. Didion",
title = "\pkg{xphyle}: Extraordinarily simple file handling",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "14",
pages = "255:1--255:1",
month = jun,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00255",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00255",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 June 2017",
ORCID-numbers = "John P. Didion / 0000-0002-8111-6261",
}
@Article{Nolan:2017:PFR,
author = "Rory Nolan and Sergi Padilla-Parra",
title = "\pkg{filesstrings}: An {R} package for file and string
manipulation",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "14",
pages = "260:1--260:2",
month = jun,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00260",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00260",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 June 2017",
ORCID-numbers = "Rory Nolan / 0000-0002-5239-4043; Sergi Padilla-Parra
/ 0000-0002-8010-9481",
}
@Article{Raschka:2017:PBW,
author = "Sebastian Raschka",
title = "\pkg{BioPandas}: Working with molecular structures in
\pkg{pandas} {DataFrames}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "14",
pages = "279:1--279:1",
month = jun,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00279",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00279",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 June 2017",
ORCID-numbers = "Sebastian Raschka / 0000-0001-6989-4493",
}
@Article{Kleinberg:2017:WBT,
author = "Bennett Kleinberg and Maximilian Mozes",
title = "{Web}-based text anonymization with \pkg{Node.js}:
Introducing {NETANOS (Named entity-based Text
Anonymization for Open Science)}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "14",
pages = "293:1--293:2",
month = jun,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00293",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00293",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "25 June 2017",
ORCID-numbers = "Bennett Kleinberg / 0000-0003-1658-9086; Maximilian
Mozes / 0000-0001-8138-3792",
}
@Article{Arnold:2017:PKR,
author = "Taylor B. Arnold",
title = "\pkg{kerasR}: {R} Interface to the {Keras Deep
Learning Library}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "14",
pages = "296:1--296:1",
month = jun,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00296",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00296",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 June 2017",
ORCID-numbers = "Taylor B. Arnold / 0000-0003-0576-0669",
}
@Article{Padgham:2017:PO,
author = "Mark Padgham and Robin Lovelace and Ma{\"e}lle Salmon
and Bob Rudis",
title = "\pkg{osmdata}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "14",
pages = "305:1--305:1",
month = jun,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00305",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00305",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 June 2017",
}
@Article{Moritz:2017:TDS,
author = "Dominik Moritz",
title = "Text detection in screen images with a Convolutional
Neural Network",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "15",
pages = "235:1--235:1",
month = jul,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00235",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00235",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 July 2017",
ORCID-numbers = "Dominik Moritz / 0000-0002-3110-1053",
}
@Article{Standage:2017:PKR,
author = "Daniel Standage and Ali Aliyari and Lisa J. Cohen and
Michael R. Crusoe and Tim Head and Luiz Irber and
Shannon E. K. Joslin and N. B. Kingsley and Kevin
D. Murray and Russell Neches and Camille Scott and Ryan
Shean and Sascha Steinbiss and Cait Sydney and C. Titus
Brown",
title = "\pkg{khmer} release v2.1: software for biological
sequence analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "15",
pages = "272:1--272:2",
month = jul,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00272",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00272",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 July 2017",
ORCID-numbers = "Daniel Standage / 0000-0003-0342-8531; Ali Aliyari /
0000-0003-0925-4886; Lisa J. Cohen /
0000-0002-3600-7218; Michael R. Crusoe /
0000-0002-2961-9670; Tim Head / 0000-0003-0931-3698;
Luiz Irber / 0000-0003-4371-9659; Shannon E. K. Joslin
/ 0000-0001-5470-1193; N. B. Kingsley /
0000-0001-8574-8592; Kevin D. Murray /
0000-0002-2466-1917; Russell Neches /
0000-0002-2055-8381; Camille Scott /
0000-0001-8822-8779; Sascha Steinbiss /
0000-0002-2151-0574; C. Titus Brown /
0000-0001-6001-2677",
}
@Article{Bock:2017:POO,
author = "Alexander Bock and Emil Axelsson and Karl Bladin and
Jonathas Costa and Gene Payne and Matthew Territo and
Joakim Kilby and Masha Kuznetsova and Carter Emmart and
Anders Ynnerman",
title = "\pkg{OpenSpace}: An open-source astrovisualization
framework",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "15",
pages = "281:1--281:1",
month = jul,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00281",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00281",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 July 2017",
ORCID-numbers = "Alexander Bock / 0000-0002-2849-6146; Emil Axelsson /
0000-0003-3482-6356; Karl Bladin / 0000-0001-7789-0142;
Jonathas Costa / 0000-0002-5008-5685; Gene Payne /
0000-0001-8022-4781; Matthew Territo /
0000-0002-7085-1770; Masha Kuznetsova /
0000-0002-2474-5125; Anders Ynnerman /
0000-0002-9466-9826",
}
@Article{Constantinides:2017:PKI,
author = "Bede Constantinides and David L. Robertson",
title = "\pkg{Kindel}: indel-aware consensus for nucleotide
sequence alignments",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "15",
pages = "282:1--282:2",
month = jul,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00282",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00282",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "13 July 2017",
ORCID-numbers = "Bede Constantinides / 0000-0002-3480-3819; David L.
Robertson / 0000-0001-6338-0221",
}
@Article{DeVecchi:2017:PCC,
author = "Daniele {De Vecchi} and Fabio Dell'Acqua and Daniel
Aurelio Galeazzo",
title = "\pkg{CLOOPSy} --- {Copernicus Land cOver crOwdsourcing
Platform for Sentinel-based mapping}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "15",
pages = "291:1--291:2",
month = jul,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00291",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00291",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 July 2017",
ORCID-numbers = "Daniele De Vecchi / 0000-0001-8600-7657; Fabio
Dell'Acqua / 0000-0002-0044-2998",
}
@Article{Hejazi:2017:PBT,
author = "Nima S. Hejazi and Weixin Cai and Alan E. Hubbard",
title = "\pkg{biotmle}: Targeted Learning for Biomarker
Discovery",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "15",
pages = "295:1--295:4",
month = jul,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00295",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00295",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 July 2017",
ORCID-numbers = "Nima S. Hejazi / 0000-0002-7127-2789; Weixin Cai /
0000-0003-2680-3066; Alan E. Hubbard /
0000-0002-3769-0127",
}
@Article{Krishnan:2017:PCG,
author = "Anush Krishnan and Olivier Mesnard and Lorena A.
Barba",
title = "\pkg{cuIBM}: a {GPU}-based immersed boundary method
code",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "15",
pages = "301:1--301:1",
month = jul,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00301",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00301",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 July 2017",
ORCID-numbers = "Olivier Mesnard / 0000-0001-5335-7853; Lorena A.
Barba / 0000-0001-5812-2711",
}
@Article{Harrison:2017:PVA,
author = "Paul Francis Harrison",
title = "\pkg{Varistran}: {Anscombe}'s variance stabilizing
transformation for {RNA-seq} gene expression data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "257:1--257:1",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00257",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00257",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 August 2017",
ORCID-numbers = "Paul Francis Harrison / 0000-0002-3980-268X",
}
@Article{Hermes:2017:HBC,
author = "Danny Hermes",
title = "Helper for B{\'e}zier Curves, Triangles, and Higher
Order Objects",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "267:1--267:3",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00267",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00267",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "02 August 2017",
ORCID-numbers = "Danny Hermes / 0000-0001-7366-173X",
}
@Article{Chuang:2017:PAI,
author = "Pi-Yueh Chuang and Lorena A. Barba",
title = "\pkg{AmgXWrapper}: An interface between \pkg{PETSc}
and the {NVIDIA} \pkg{AmgX} library",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "280:1--280:1",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00280",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00280",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 August 2017",
ORCID-numbers = "Pi-Yueh Chuang / 0000-0001-6330-2709; Lorena A. Barba
/ 0000-0001-5812-2711",
}
@Article{Wilson:2017:PLS,
author = "Lucas A. Wilson and John M. Fonner and Jason Allison
and Oscar Esteban and Harry Kenya and Marshall Lerner",
title = "\pkg{Launcher}: A simple tool for executing high
throughput computing workloads",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "289:1--289:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00289",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00289",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 August 2017",
ORCID-numbers = "Lucas A. Wilson / 0000-0002-0686-3152",
}
@Article{Dawe:2017:PRI,
author = "Edmund Noel Dawe and Piti Ongmongkolkul and Giordon
Stark",
title = "\pkg{root\_numpy}: The interface between \pkg{ROOT}
and \pkg{NumPy}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "307:1--307:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00307",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00307",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "13 August 2017",
ORCID-numbers = "Edmund Noel Dawe / 0000-0003-0202-3284; Giordon Stark
/ 0000-0001-6616-3433",
}
@Article{vanHeeringen:2017:PGD,
author = "Simon J. van Heeringen",
title = "\pkg{genomepy}: download genomes the easy way",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "320:1--320:1",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00320",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00320",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 August 2017",
ORCID-numbers = "Simon J. van Heeringen / 0000-0002-0411-3219",
}
@Article{Stadler:2017:CCP,
author = "Konstantin Stadler",
title = "The country converter \pkg{coco} --- a {Python}
package for converting country names between different
classification schemes",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "332:1--332:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00332",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00332",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 August 2017",
ORCID-numbers = "Konstantin Stadler / 0000-0002-1548-201X",
}
@Article{Salmon:2017:PRR,
author = "Ma{\"e}lle Salmon and Sreekanth Vakacherla and Carles
Mil{\`a} and Julian D. Marshall and Cathryn Tonne",
title = "\pkg{rtimicropem}: an {R} package supporting the
analysis of {RTI MicroPEM} output files",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "333:1--333:1",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00333",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00333",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "02 August 2017",
ORCID-numbers = "Ma{\"e}lle Salmon / 0000-0002-2815-0399; Sreekanth
Vakacherla / 0000-0003-0400-6584; Carles Mil{\`a} /
0000-0003-0470-0760; Julian D. Marshall /
0000-0003-4087-1209; Cathryn Tonne /
0000-0003-3919-8264",
}
@Article{McLean:2017:PRI,
author = "Mathew W. McLean",
title = "\pkg{RefManageR}: Import and Manage {BibTeX} and
{BibLaTeX} References in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "338:1--338:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00338",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00338",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 August 2017",
ORCID-numbers = "Mathew W. McLean / 0000-0002-7891-9645",
}
@Article{Joyce:2017:PLI,
author = "P. James Joyce",
title = "\pkg{Lcopt} --- An interactive tool for creating fully
parameterised Life Cycle Assessment {(LCA)} foreground
models",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "339:1--339:1",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00339",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00339",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 August 2017",
ORCID-numbers = "P James Joyce / 0000-0002-9560-3132",
}
@Article{Strozzi:2017:PPU,
author = "Francesco Strozzi and Raoul Jean Pierre Bonnal",
title = "\pkg{Pipengine}: an ultra light {YAML}-based pipeline
execution engine",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "341:1--341:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00341",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00341",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 August 2017",
ORCID-numbers = "Francesco Strozzi / 0000-0002-6845-6982; Raoul Jean
Pierre Bonnal / 0000-0002-2123-6536",
}
@Article{Bazan:2017:PNR,
author = "Juanjo Baz{\'a}n and Oscar Gonzalez-Recio",
title = "\pkg{Nimbus}: a {Ruby} gem to implement Random Forest
algorithms in a genomic selection context",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "351:1--351:3",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00351",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00351",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 August 2017",
ORCID-numbers = "Juanjo Baz{\'a}n / 0000-0001-7699-3983; Oscar
Gonzalez-Recio / 0000-0002-9106-4063",
}
@Article{Cokelaer:2017:PSSa,
author = "Thomas Cokelaer and Dimitri Desvillechabrol and Rachel
Legendre and M{\'e}lissa Cardon",
title = "{'\pkg{Sequana}'}: a Set of {Snakemake NGS}
pipelines",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "352:1--352:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00352",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00352",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 August 2017",
ORCID-numbers = "Thomas Cokelaer / 0000-0001-6286-1138; Dimitri
Desvillechabrol / 0000-0002-4947-7876; Rachel Legendre
/ 0000-0002-5196-9431; M{\'e}lissa Cardon /
0000-0001-9906-3236",
}
@Article{Ferraris:2017:PBM,
author = "Sebastiano Ferraris and Dzhoshkun Ismail Shakir and
Johannes {Van Der Merwe} and Willy Gsell and Jan
Deprest and Tom Vercauteren",
title = "\pkg{Bruker2nifti}: Magnetic Resonance Images
converter from {Bruker} \pkg{ParaVision} to \pkg{Nifti}
format",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "354:1--354:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00354",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00354",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 August 2017",
ORCID-numbers = "Sebastiano Ferraris / 0000-0001-9279-4765; Dzhoshkun
Ismail Shakir / 0000-0003-3009-4178; Johannes Van Der
Merwe / 0000-0002-1381-4033; Willy Gsell /
0000-0001-7334-6107; Jan Deprest / 0000-0002-4920-945X;
Tom Vercauteren / 0000-0003-1794-0456",
}
@Article{Tierney:2017:PVV,
author = "Nicholas Tierney",
title = "\pkg{visdat}: Visualising Whole Data Frames",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "355:1--355:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00355",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00355",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 August 2017",
ORCID-numbers = "Nicholas Tierney / 0000-0003-1460-8722",
}
@Article{Schep:2017:PII,
author = "Alicia N. Schep and Sarah K. Kummerfeld",
title = "\pkg{iheatmapr}: Interactive complex heatmaps in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "359:1--359:1",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00359",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00359",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 August 2017",
ORCID-numbers = "Alicia N. Schep / 0000-0002-3915-0618; Sarah K.
Kummerfeld / 0000-0002-0089-2358",
}
@Article{Sommer:2017:PPI,
author = "Philipp S. Sommer",
title = "The \pkg{psyplot} interactive visualization
framework",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "363:1--363:1",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00363",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00363",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 August 2017",
ORCID-numbers = "Philipp S. Sommer / 0000-0001-6171-7716",
}
@Article{Hobson:2017:PDR,
author = "Tanner C. Hobson and Mathieu Doucet and Ricardo M.
Ferraz Leal",
title = "\pkg{Django} Remote Submission",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "366:1--366:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00366",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00366",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 August 2017",
ORCID-numbers = "Tanner C. Hobson / 0000-0002-6269-7881; Mathieu
Doucet / 0000-0002-5560-6478; Ricardo M. Ferraz Leal /
0000-0002-9931-8304",
}
@Article{Morgan:2017:PBB,
author = "Benjamin J. Morgan",
title = "\pkg{bsym}: A basic symmetry module",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "16",
pages = "370:1--370:2",
month = aug,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00370",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00370",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 August 2017",
ORCID-numbers = "Benjamin J. Morgan / 0000-0002-3056-8233",
}
@Article{Haghighi:2017:PPP,
author = "Sepand Haghighi",
title = "\pkg{Pyrgg}: {Python Random Graph Generator}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "331:1--331:2",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00331",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00331",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 September 2017",
ORCID-numbers = "Sepand Haghighi / 0000-0001-9450-2375",
}
@Article{Versypt:2017:PAO,
author = "Ashlee N. Ford Versypt and Grace K. Harrell and
Alexandra N. McPeak",
title = "\pkg{ACEInhibPKPD}: An open-source {MATLAB} app for a
pharmacokinetic\slash pharmacodynamic model of {ACE}
inhibition",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "340:1--340:2",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00340",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00340",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 September 2017",
ORCID-numbers = "Ashlee N. Ford Versypt / 0000-0001-9059-5703",
}
@Article{Price-Whelan:2017:PSU,
author = "Adrian M. Price-Whelan and Daniel Foreman-Mackey",
title = "\pkg{schwimmbad}: A uniform interface to parallel
processing pools in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "357:1--357:2",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00357",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00357",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 September 2017",
ORCID-numbers = "Adrian M. Price-Whelan / 0000-0003-0872-7098; Daniel
Foreman-Mackey / 0000-0002-9328-5652",
}
@Article{vanHulten:2017:PCC,
author = "Marco van Hulten",
title = "\pkg{ComPlot}: Comparison Plotter to visually evaluate
ocean model simulations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "368:1--368:4",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00368",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00368",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 September 2017",
ORCID-numbers = "Marco van Hulten / 0000-0002-3045-4949",
}
@Article{Binet:2017:PGH,
author = "Sebastien Binet and Bastian Wieck and David Blyth and
Emmanuel Busato and Micha{\"e}l Ughetto and Peter
Waller",
title = "\pkg{Go-HEP}: libraries for High Energy Physics
analyses in {Go}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "372:1--372:4",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00372",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00372",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 September 2017",
ORCID-numbers = "Sebastien Binet / 0000-0003-4913-6104; Bastian Wieck
/ 0000-0001-6658-6807; David Blyth /
0000-0001-8452-516X; Emmanuel Busato /
0000-0003-2174-8512; Micha{\"e}l Ughetto /
0000-0002-3814-454X",
}
@Article{Latham:2017:PAM,
author = "Shane J. Latham",
title = "\pkg{array\_split}: Multi-dimensional array
partitioning",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "373:1--373:2",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00373",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00373",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 September 2017",
ORCID-numbers = "Shane J. Latham / 0000-0001-8033-4665",
}
@Article{Bossek:2017:PMT,
author = "Jakob Bossek",
title = "\pkg{mcMST}: A Toolbox for the Multi-Criteria Minimum
Spanning Tree Problem",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "374:1--374:2",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00374",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00374",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 September 2017",
ORCID-numbers = "Jakob Bossek / 0000-0002-4121-4668",
}
@Article{Raamana:2017:PPC,
author = "Pradeep Reddy Raamana and Stephen C. Strother",
title = "\pkg{Python} class defining a machine learning dataset
ensuring key-based correspondence and maintaining
integrity",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "382:1--382:1",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00382",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00382",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 September 2017",
ORCID-numbers = "Pradeep Reddy Raamana / 0000-0003-4662-0558; Stephen
C. Strother / 0000-0002-3198-217X",
}
@Article{Margolis:2017:PSP,
author = "Benjamin W. L. Margolis",
title = "\pkg{SimuPy}: A {Python} framework for modeling and
simulating dynamical systems",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "396:1--396:1",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00396",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00396",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 September 2017",
ORCID-numbers = "Benjamin W. L. Margolis / 0000-0001-5602-1888",
}
@Article{Kessler:2017:PEL,
author = "Travis Kessler and John Hunter Mack",
title = "\pkg{ECNet}: Large scale machine learning projects for
fuel property prediction",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "401:1--401:2",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00401",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00401",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 September 2017",
ORCID-numbers = "Travis Kessler / 0000-0002-7363-4050",
}
@Article{Kane:2017:PBR,
author = "Michael Kane",
title = "\pkg{bittrex}: An {R} client for the {Bittrex
Crypto-Currency Exchange}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "402:1--402:1",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00402",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00402",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 September 2017",
ORCID-numbers = "Michael Kane / 0000-0003-1899-6662",
}
@Article{Sparks:2017:PBF,
author = "Adam H. Sparks and Mark Padgham and Hugh Parsonage and
Keith Pembleton",
title = "\pkg{bomrang}: Fetch {Australian Government Bureau of
Meteorology} Data in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "17",
pages = "411:1--411:2",
month = sep,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00411",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00411",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 September 2017",
ORCID-numbers = "Adam H. Sparks / 0000-0002-0061-8359; Mark Padgham /
0000-0003-2172-5265; Hugh Parsonage /
0000-0003-4055-0835; Keith Pembleton /
0000-0002-1896-4516",
}
@Article{Kortschak:2017:PBN,
author = "R. Daniel Kortschak and David L. Adelson",
title = "\pkg{b{\'\i}ogo/ncbi}: interfaces to {NCBI} services
for the {Go} language",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "234:1--234:2",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00234",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00234",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "25 October 2017",
ORCID-numbers = "R Daniel Kortschak / 0000-0001-8295-2301; David L.
Adelson / 0000-0003-2404-5636",
}
@Article{Cardenas:2017:PGM,
author = "Offray Vladimir Luna C{\'a}rdenas",
title = "\pkg{Grafoscopio}: A moldable tool for literate
computing and reproducible research",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "251:1--251:2",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00251",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00251",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 October 2017",
ORCID-numbers = "Offray Vladimir Luna C{\'a}rdenas /
0000-0002-4640-6984",
}
@Article{Cokelaer:2017:PSSb,
author = "Thomas Cokelaer and Juergen Hasch",
title = "\pkg{'Spectrum'}: Spectral Analysis in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "348:1--348:2",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00348",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00348",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 October 2017",
ORCID-numbers = "Thomas Cokelaer / 0000-0001-6286-1138; Juergen Hasch
/ 0000-0002-9457-1220",
}
@Article{Wojdyr:2017:PUW,
author = "Marcin Wojdyr",
title = "\pkg{UglyMol}: a {WebGL} macromolecular viewer focused
on the electron density",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "350:1--350:2",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00350",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00350",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 October 2017",
ORCID-numbers = "Marcin Wojdyr / 0000-0003-3980-4092",
}
@Article{Sanderson:2017:PGP,
author = "Conrad Sanderson and Ryan Curtin",
title = "\pkg{gmm\_diag} and \pkg{gmm\_full}: {C++} classes for
multi-threaded {Gaussian} mixture models and
Expectation-Maximisation",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "365:1--365:2",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00365",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/multithreading.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00365",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "16 October 2017",
ORCID-numbers = "Conrad Sanderson / 0000-0002-0049-4501; Ryan Curtin /
0000-0002-9903-8214",
}
@Article{Rovigatti:2017:PFE,
author = "Gabriele Rovigatti",
title = "Production Function Estimation in {R}: The
\pkg{prodest} Package",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "371:1--371:1",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00371",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00371",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 October 2017",
ORCID-numbers = "Gabriele Rovigatti / 0000-0003-4021-3070",
}
@Article{Mahar:2017:PHP,
author = "Sara Mahar and Matthew Bellis",
title = "\pkg{hmis}: A python tool to visualize and analyze
{HMIS} data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "384:1--384:2",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00384",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00384",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 October 2017",
ORCID-numbers = "Sara Mahar / 0000-0003-0920-3042; Matthew Bellis /
0000-0002-6353-6043",
}
@Article{Price-Whelan:2017:PGP,
author = "Adrian M. Price-Whelan",
title = "\pkg{Gala}: A {Python} package for galactic dynamics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "388:1--388:2",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00388",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00388",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 October 2017",
ORCID-numbers = "Adrian M. Price-Whelan / 0000-0003-0872-7098",
}
@Article{Lauwens:2017:PRC,
author = "Ben Lauwens",
title = "\pkg{ResumableFunctions}: {C\#} sharp style generators
for {Julia}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "400:1--400:2",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00400",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/csharp.bib;
https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00400",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "31 October 2017",
ORCID-numbers = "Ben Lauwens / 0000-0003-0761-6265",
}
@Article{Stegmaier:2017:PGR,
author = "Philip Stegmaier and Alexander Kel and Edgar
Wingender",
title = "\pkg{geneXplainR}: An {R} interface for the
{geneXplain} platform",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "412:1--412:3",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00412",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00412",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "17 October 2017",
ORCID-numbers = "Philip Stegmaier / 0000-0002-1881-8746",
}
@Article{Folsom:2017:PHC,
author = "Tim Folsom and V. P. Nagraj",
title = "\pkg{hei}: Calculate Healthy Eating Index {(HEI)}
Scores",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "417:1--417:1",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00417",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00417",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 October 2017",
ORCID-numbers = "Tim Folsom / 0000-0002-8647-5810; V. P. Nagraj /
0000-0003-0060-566X",
}
@Article{Batut:2017:PEP,
author = "B{\'e}r{\'e}nice Batut and Bj{\"o}rn Gr{\"u}ning",
title = "\pkg{ENASearch}: A {Python} library for interacting
with {ENA}'s {API}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "418:1--418:1",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00418",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00418",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "25 October 2017",
ORCID-numbers = "B{\'e}r{\'e}nice Batut / 0000-0001-9852-1987;
Bj{\"o}rn Gr{\"u}ning / 0000-0002-3079-6586",
}
@Article{Heusser:2017:PQP,
author = "Andrew C. Heusser and Paxton C. Fitzpatrick and
Campbell E. Field and Kirsten Ziman and Jeremy
R. Manning",
title = "\pkg{Quail}: A {Python} toolbox for analyzing and
plotting free recall data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "424:1--424:2",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00424",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00424",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 October 2017",
ORCID-numbers = "Andrew C. Heusser / 0000-0001-6353-688X; Paxton C.
Fitzpatrick / 0000-0003-0205-3088; Campbell E. Field /
0000-0001-7260-635X; Kirsten Ziman /
0000-0002-8942-3362; Jeremy R. Manning /
0000-0001-7613-4732",
}
@Article{Sochat:2017:SRO,
author = "Vanessa Sochat",
title = "Singularity Registry: Open Source Registry for
Singularity Images",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "18",
pages = "426:1--426:3",
month = oct,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00426",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00426",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "16 October 2017",
ORCID-numbers = "Vanessa Sochat / 0000-0002-4387-3819",
}
@Article{Polimis:2017:CIR,
author = "Kivan Polimis and Ariel Rokem and Bryna Hazelton",
title = "Confidence Intervals for Random Forests in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "124:1--124:4",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00124",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00124",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 November 2017",
ORCID-numbers = "Kivan Polimis / 0000-0002-3498-0479; Ariel Rokem /
0000-0003-0679-1985; Bryna Hazelton /
0000-0001-7532-645X",
}
@Article{Makowski:2017:PNP,
author = "Dominique Makowski and L{\'e}o Dutriaux",
title = "\pkg{Neuropsydia.py}: A {Python} Module for Creating
Experiments, Tasks and Questionnaires",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "259:1--259:2",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00259",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00259",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 November 2017",
ORCID-numbers = "Dominique Makowski / 0000-0001-5375-9967; L{\'e}o
Dutriaux / 0000-0001-6304-8691",
}
@Article{Clementi:2017:PPL,
author = "Natalia C. Clementi and Gilbert Forsyth and
Christopher D. Cooper and Lorena A. Barba",
title = "\pkg{PyGBe-LSPR}: {Python} and {GPU} Boundary-integral
solver for electrostatics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "306:1--306:2",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00306",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00306",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 November 2017",
ORCID-numbers = "Natalia C. Clementi / 0000-0002-0575-5520; Gilbert
Forsyth / 0000-0002-4983-1978; Christopher D. Cooper /
0000-0003-0282-8998; Lorena A. Barba /
0000-0001-5812-2711",
}
@Article{Raamana:2017:HWN,
author = "Pradeep Reddy Raamana and Stephen C. Strother",
title = "Histogram-weighted Networks for Feature Extraction,
Connectivity and Advanced Analysis in Neuroscience",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "380:1--380:3",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00380",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00380",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 November 2017",
ORCID-numbers = "Pradeep Reddy Raamana / 0000-0003-4662-0558; Stephen
C. Strother / 0000-0002-3198-217X",
}
@Article{Zhang:2017:PIT,
author = "Yuxuan Zhang and Jean Bilheux",
title = "\pkg{ImagingReso}: A Tool for Neutron Resonance
Imaging",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "407:1--407:3",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00407",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00407",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "17 November 2017",
ORCID-numbers = "Yuxuan Zhang / 0000-0002-0083-1408; Jean Bilheux /
0000-0003-2172-6487",
}
@Article{Smith:2017:PUP,
author = "Andrew P. Smith",
title = "\pkg{UKCensusAPI}: python and {R} interfaces to the
nomisweb {UK} census data {API}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "408:1--408:1",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00408",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00408",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 November 2017",
ORCID-numbers = "Andrew P. Smith / 0000-0002-9951-6642",
}
@Article{Fayek:2017:PML,
author = "Haytham M. Fayek",
title = "\pkg{MatDL}: A Lightweight Deep Learning Library in
{MATLAB}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "413:1--413:2",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00413",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00413",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 November 2017",
ORCID-numbers = "Haytham M. Fayek / 0000-0002-1840-7605",
}
@Article{Hernandez:2017:PMI,
author = "Carlos X. Hern{\'a}ndez and Vijay S. Pande",
title = "\pkg{MDEntropy}: Information-Theoretic Analyses for
Molecular Dynamics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "427:1--427:2",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00427",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00427",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 November 2017",
ORCID-numbers = "Carlos X. Hern{\'a}ndez / 0000-0002-8146-5904",
}
@Article{Jimenez:2017:PPB,
author = "Jos{\'e} Jim{\'e}nez and Josep Ginebra",
title = "\pkg{pyGPGO}: {Bayesian} Optimization for {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "431:1--431:3",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00431",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00431",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "02 November 2017",
ORCID-numbers = "Jos{\'e} Jim{\'e}nez / 0000-0002-5335-7834; Josep
Ginebra / 0000-0001-9521-9635",
}
@Article{Bloice:2017:PAI,
author = "Marcus D. Bloice and Christof Stocker and Andreas
Holzinger",
title = "\pkg{Augmentor}: An Image Augmentation Library for
Machine Learning",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "432:1--432:2",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00432",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00432",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 November 2017",
ORCID-numbers = "Marcus D. Bloice / 0000-0002-2468-4086; Christof
Stocker / 0000-0002-1276-7976; Andreas Holzinger /
0000-0002-6786-5194",
}
@Article{Renard:2017:PHO,
author = "Philippe Renard",
title = "\pkg{Hytool}: an open source {MATLAB} toolbox for the
interpretation of hydraulic tests using analytical
solutions",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "441:1--441:3",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00441",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00441",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 November 2017",
ORCID-numbers = "Philippe Renard / 0000-0003-4504-435X",
}
@Article{Kironde:2017:PRD,
author = "Henry Kironde and Benjamin D. Morris and Akash Goel
and Andrew Zhang and Akshay Narasimha and Shivam Negi
and David J. Harris and Deborah Gertrude Digges and
Kapil Kumar and Amritanshu Jain and Kunal Pal and
Kevinkumar Amipara and Prabh Simran Singh Baweja and
Ethan P. White",
title = "\pkg{Retriever}: Data Retrieval Tool",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "451:1--451:1",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00451",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00451",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 November 2017",
ORCID-numbers = "Henry Kironde / 0000-0001-7105-5808; Benjamin D.
Morris / 0000-0003-4418-1360; Akash Goel /
0000-0001-9878-0401; Andrew Zhang /
0000-0003-1148-7734; Akshay Narasimha /
0000-0002-3901-2610; Shivam Negi / 0000-0002-5637-0479;
David J. Harris / 0000-0003-3332-9307; Deborah Gertrude
Digges / 0000-0002-7840-5054; Kapil Kumar /
0000-0002-2292-1033; Amritanshu Jain /
0000-0003-1187-7900; Kunal Pal / 0000-0002-9657-0053;
Kevinkumar Amipara / 0000-0001-5021-2018; Prabh Simran
Singh Baweja / 0000-0003-3997-4470; Ethan P. White /
0000-0001-6728-7745",
}
@Article{Boettiger:2017:GPC,
author = "Carl Boettiger",
title = "Generating \pkg{CodeMeta} Metadata for {R} Packages",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "454:1--454:1",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00454",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00454",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "13 November 2017",
ORCID-numbers = "Carl Boettiger / 0000-0002-1642-628X",
}
@Article{Datseris:2017:PDJ,
author = "George Datseris",
title = "\pkg{DynamicalBilliards.jl}: An easy-to-use, modular
and extendable {Julia} package for {Dynamical Billiard}
systems in two dimensions",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "19",
pages = "458:1--458:4",
month = nov,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00458",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00458",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 November 2017",
ORCID-numbers = "George Datseris / 0000-0002-6427-2385",
}
@Article{Schmeisser:2017:PER,
author = "Andre Schmei{\ss}er and Daniel Burkhart and Dominik
Linn and Johannes Schnebele and Manuel Ettm{\"u}ller
and Simone Gramsch and Walter Arne",
title = "\pkg{Ensight4Matlab}: read, process, and write files
in {EnSight{\reg}} Gold format from {C++} or
{MATLAB{\reg}}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "217:1--217:1",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00217",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00217",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 December 2017",
ORCID-numbers = "Andre Schmei{\ss}er / 0000-0002-4400-9635; Simone
Gramsch / 0000-0002-6720-9840; Walter Arne /
0000-0001-5364-3788",
}
@Article{Dandage:2017:PDC,
author = "Rohan Dandage and Kausik Chakraborty",
title = "\pkg{dms2dfe}: Comprehensive Workflow for Analysis of
Deep Mutational Scanning Data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "362:1--362:3",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00362",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00362",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 December 2017",
ORCID-numbers = "Rohan Dandage / 0000-0002-6421-2067; Kausik
Chakraborty / 0000-0001-6000-8379",
}
@Article{Honkonen:2017:HDI,
author = "Ilja Honkonen",
title = "High-Dimensional Integrator",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "437:1--437:1",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00437",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00437",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 December 2017",
ORCID-numbers = "Ilja Honkonen / 0000-0002-9542-5866",
}
@Article{Delestre:2017:PFF,
author = "Olivier Delestre and Fr{\'e}d{\'e}ric Darboux and
Fran{\c{c}}ois James and Carine Lucas and Christian
Laguerre and St{\'e}phane Cordier",
title = "\pkg{FullSWOF}: Full Shallow-Water equations for
Overland Flow",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "448:1--448:1",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00448",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00448",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 December 2017",
ORCID-numbers = "Carine Lucas / 0000-0003-1700-4553",
}
@Article{Chitta:2017:PRG,
author = "Sachin Chitta and Eitan Marder-Eppstein and Wim
Meeussen and Vijay Pradeep and Adolfo Rodr{\'\i}guez
Tsouroukdissian and Jonathan Bohren and David Coleman
and Bence Magyar and Gennaro Raiola and Mathias
L{\"u}dtke and Enrique Fernandez Perdomo",
title = "\pkg{ros\_control}: A generic and simple control
framework for {ROS}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "456:1--456:5",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00456",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00456",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 December 2017",
ORCID-numbers = "Sachin Chitta / 0000-0003-4859-6096; Eitan
Marder-Eppstein / 0000-0003-0940-7117; Wim Meeussen /
0000-0003-1905-4001; Vijay Pradeep /
0000-0002-8280-7275; Adolfo Rodr{\'\i}guez
Tsouroukdissian / 0000-0002-3075-1329; Jonathan Bohren
/ 0000-0003-4568-6352; David Coleman /
0000-0001-6112-1795; Bence Magyar /
0000-0001-8455-8674; Gennaro Raiola /
0000-0003-1481-1106; Mathias L{\"u}dtke /
0000-0002-1835-3854; Enrique Fernandez Perdomo /
0000-0002-4881-0497",
}
@Article{Okada:2017:FGI,
author = "Ai Okada and Kenichi Chiba and Hiroko Tanaka and
Satoru Miyano and Yuichi Shiraishi",
title = "A framework for generating interactive reports for
cancer genome analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "457:1--457:4",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00457",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00457",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 December 2017",
ORCID-numbers = "Ai Okada / 0000-0002-9782-5900; Yuichi Shiraishi /
0000-0001-6144-5845",
}
@Article{Suess:2017:PMM,
author = "Daniel Suess and Milan Holz{\"a}pfel",
title = "\pkg{mpnum}: A matrix product representation library
for {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "465:1--465:2",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00465",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00465",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 December 2017",
ORCID-numbers = "Daniel Suess / 0000-0002-6354-457X; Milan
Holz{\"a}pfel / 0000-0002-4687-5027",
}
@Article{Padgham:2017:PB,
author = "Mark Padgham and Richard Ellison",
title = "\pkg{bikedata}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "471:1--471:1",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00471",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00471",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 December 2017",
ORCID-numbers = "Mark Padgham / 0000-0003-2172-5265",
}
@Article{Lockley:2017:PXE,
author = "Steve Lockley and Claudio Benghi and Martin
{\v{C}}ern{\'y}",
title = "\pkg{Xbim.Essentials}: a library for interoperable
building information applications",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "473:1--473:3",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00473",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00473",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 December 2017",
ORCID-numbers = "Claudio Benghi / 0000-0003-3252-5461; Martin
{\v{C}}ern{\'y} / 0000-0003-2248-0781",
}
@Article{Harris:2017:EUP,
author = "David J. Harris",
title = "An easy-to-use \pkg{p5.js} {$3$D} object picker for
visual artists",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "475:1--475:2",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00475",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00475",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 December 2017",
ORCID-numbers = "David J. Harris / 0000-0002-8321-2062",
}
@Article{Albers:2017:PTE,
author = "Sam Albers",
title = "\pkg{tidyhydat}: Extract and Tidy {Canadian}
Hydrometric Data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "511:1--511:4",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00511",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00511",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 December 2017",
ORCID-numbers = "Sam Albers / 0000-0002-9270-7884",
}
@Article{Shi:2017:CCD,
author = "Sinan Shi and David P{\'e}rez-Su{\'a}rez and Steve
Harris and Niall MacCallum and David Brealey and Mervyn
Singer and James Hetherington",
title = "Critical care data processing tools",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "2",
number = "20",
pages = "513:1--513:4",
month = dec,
year = "2017",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00513",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00513",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 December 2017",
ORCID-numbers = "Sinan Shi / 0000-0001-6935-0429; David
P{\'e}rez-Su{\'a}rez / 0000-0003-0784-6909; Steve
Harris / 0000-0002-4982-1374; Niall MacCallum /
0000-0001-6168-1506; David Brealey /
0000-0002-1982-3379; Mervyn Singer /
0000-0002-1042-6350; James Hetherington /
0000-0001-6993-0319",
}
@Article{LeBeau:2018:PHC,
author = "Brandon LeBeau",
title = "\pkg{highlightHTML}: {CSS} Formatting of {R}
{Markdown} Documents",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "185:1--185:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00185",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00185",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 January 2018",
ORCID-numbers = "Brandon LeBeau / 0000-0002-1265-8761",
}
@Article{Marzolin:2018:FGG,
author = "Gilbert Marzolin and Olivier Gimenez",
title = "Fitting a {Gamma--Gompertz} survival model to
capture-recapture data collected on free-ranging animal
populations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "216:1--216:3",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00216",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00216",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 January 2018",
ORCID-numbers = "Gilbert Marzolin / 0000-0002-7819-5739; Olivier
Gimenez / 0000-0001-7001-5142",
}
@Article{Lindsay:2018:PMF,
author = "Alexander Lindsay and Kathryn Huff",
title = "\pkg{Moltres}: finite element based simulation of
molten salt reactors",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "298:1--298:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00298",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00298",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 January 2018",
ORCID-numbers = "Alexander Lindsay / 0000-0002-6988-2123; Kathryn Huff
/ 0000-0002-7075-6802",
}
@Article{Moore:2018:POS,
author = "Jason K. Moore and Antonie van den Bogert",
title = "\pkg{opty}: Software for trajectory optimization and
parameter identification using direct collocation",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "300:1--300:4",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00300",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00300",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 January 2018",
ORCID-numbers = "Jason K. Moore / 0000-0002-8698-6143; Antonie van den
Bogert / 0000-0002-3791-3749",
}
@Article{Govan:2018:PBI,
author = "Paul B. Govan",
title = "\pkg{BayesianNetwork}: Interactive {Bayesian} Network
Modeling and Analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "425:1--425:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00425",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00425",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 January 2018",
ORCID-numbers = "Paul B. Govan / 0000-0002-1821-8492",
}
@Article{Miranda:2018:PPR,
author = "Lester James V. Miranda",
title = "\pkg{PySwarms}: a research toolkit for Particle Swarm
Optimization in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "433:1--433:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00433",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00433",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "10 January 2018",
ORCID-numbers = "Lester James V. Miranda / 0000-0002-7872-6464",
}
@Article{Lin:2018:PMP,
author = "Jiao Y. Y. Lin and Fahima Islam and Max Kresh",
title = "\pkg{Multiphonon}: Phonon Density of States tools for
Inelastic Neutron Scattering Powder Data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "440:1--440:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00440",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00440",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 January 2018",
ORCID-numbers = "Jiao Y. Y. Lin / 0000-0001-9233-0100; Fahima Islam /
0000-0002-0265-0256; Max Kresh / 0000-0002-6990-8979",
}
@Article{Sheffield:2018:PSR,
author = "Nathan Sheffield and V. P. Nagraj and Vince Reuter",
title = "\pkg{simpleCache}: {R} caching for reproducible,
distributed, large-scale projects",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "463:1--463:1",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00463",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00463",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "10 January 2018",
ORCID-numbers = "Nathan Sheffield / 0000-0001-5643-4068; V. P. Nagraj
/ 0000-0003-0060-566X; Vince Reuter /
0000-0002-7967-976X",
}
@Article{Ankenbrand:2018:PCE,
author = "Markus J. Ankenbrand and Simon Pfaff and Niklas
Terhoeven and Musga Qureischi and Maik G{\"u}ndel and
Clemens L. Wei{\ss} and Thomas Hackl and Frank
F{\"o}rster",
title = "\pkg{chloroExtractor}: extraction and assembly of the
chloroplast genome from whole genome shotgun data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "464:1--464:3",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00464",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00464",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "16 January 2018",
ORCID-numbers = "Markus J. Ankenbrand / 0000-0002-6620-807X; Simon
Pfaff / 0000-0001-8505-9439; Musga Qureischi /
0000-0001-9661-8494; Maik G{\"u}ndel /
0000-0002-0502-4576; Thomas Hackl /
0000-0002-0022-320X; Frank F{\"o}rster /
0000-0003-4166-5423",
}
@Article{Rodenhauser:2018:PPP,
author = "Anton Rodenhauser and Wilson W. Good and Brian Zenger
and Jess Tate and Kedar Aras and Brett Burton and Rob
S. MacLeod",
title = "\pkg{PFEIFER}: Preprocessing Framework for
Electrograms Intermittently Fiducialized from
Experimental Recordings",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "472:1--472:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00472",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00472",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "24 January 2018",
ORCID-numbers = "Anton Rodenhauser / 0000-0003-1077-8230; Wilson W.
Good / 0000-0002-0111-9076; Brian Zenger /
0000-0002-0039-9184; Jess Tate / 0000-0002-2934-1453;
Kedar Aras / 0000-0002-9898-1462; Brett Burton /
0000-0002-3971-4225; Rob S. MacLeod /
0000-0002-0000-0356",
}
@Article{Garay:2018:PCA,
author = "Pablo G. Garay and Jorge A. Vila and Osvaldo A.
Martin",
title = "\pkg{CheSweet}: An application to predict glycan's
chemicals shifts",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "488:1--488:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00488",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00488",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 January 2018",
ORCID-numbers = "Pablo G. Garay / 0000-0001-6604-0329; Osvaldo A.
Martin / 0000-0001-7419-8978",
}
@Article{Dahlgren:2018:PPSa,
author = "Bj{\"o}rn Dahlgren",
title = "\pkg{pyodesys}: Straightforward numerical integration
of {ODE} systems from {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "490:1--490:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00490",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00490",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 January 2018",
ORCID-numbers = "Bj{\"o}rn Dahlgren / 0000-0003-0596-0222",
}
@Article{Roy:2018:PBS,
author = "Pamphile T. Roy and Sophie Ricci and Romain Dupuis and
Robin Campet and Jean-Christophe Jouhaud and Cyril
Fournier",
title = "\pkg{BATMAN}: Statistical analysis for expensive
computer codes made easy",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "493:1--493:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00493",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00493",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "31 January 2018",
ORCID-numbers = "Pamphile T. Roy / 0000-0001-9816-1416; Sophie Ricci /
0000-0002-4232-5626; Robin Campet /
0000-0002-4434-0854",
}
@Article{Warren:2018:VGS,
author = "Ren{\'e} L. Warren",
title = "Visualizing genome synteny with \pkg{xmatchview}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "497:1--497:4",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00497",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00497",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 January 2018",
ORCID-numbers = "Ren{\'e} L. Warren / 0000-0002-9890-2293",
}
@Article{McGinnis:2018:CEP,
author = "William D. McGinnis and Chapman Siu and Andre S. and
Hanyu Huang",
title = "Category Encoders: a \pkg{scikit-learn-contrib}
package of transformers for encoding categorical data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "501:1--501:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00501",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00501",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 January 2018",
ORCID-numbers = "William D. McGinnis / 0000-0002-3009-9465; Chapman
Siu / 0000-0002-2089-3796; Andre S. /
0000-0001-5104-0465; Hanyu Huang /
0000-0001-8503-1014",
}
@Article{Coyle:2018:POG,
author = "Jeremy R. Coyle and Nima S. Hejazi",
title = "\pkg{origami}: A Generalized Framework for
Cross-Validation in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "512:1--512:3",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00512",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00512",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 January 2018",
ORCID-numbers = "Jeremy R. Coyle / 0000-0002-9874-6649; Nima S. Hejazi
/ 0000-0002-7127-2789",
}
@Article{Spielman:2018:PPP,
author = "Stephanie J. Spielman",
title = "\pkg{phyphy}: {Python} package for facilitating the
execution and parsing of {HyPhy} standard analyses",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "514:1--514:1",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00514",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00514",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "17 January 2018",
ORCID-numbers = "Stephanie J. Spielman / 0000-0002-9090-4788",
}
@Article{Kortschak:2018:PAG,
author = "R. Daniel Kortschak",
title = "\pkg{arrgh}: a {Go} interface to the {OpenCPU} {R}
server system",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "517:1--517:1",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00517",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00517",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 January 2018",
ORCID-numbers = "R Daniel Kortschak / 0000-0001-8295-2301",
}
@Article{Dahlgren:2018:PPSb,
author = "Bj{\"o}rn Dahlgren",
title = "\pkg{pyneqsys}: Solve symbolically defined systems of
non-linear equations numerically",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "531:1--531:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00531",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00531",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 January 2018",
ORCID-numbers = "Bj{\"o}rn Dahlgren / 0000-0003-0596-0222",
}
@Article{Boisgerault:2018:PBB,
author = "S{\'e}bastien Boisg{\'e}rault",
title = "\pkg{Bitstream} --- Binary Data for Humans",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "541:1--541:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00541",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00541",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "31 January 2018",
ORCID-numbers = "S{\'e}bastien Boisg{\'e}rault / 0000-0003-4685-8099",
}
@Article{Karpel:2018:PIG,
author = "Joshua T. Karpel",
title = "\pkg{IDESolver}: a general purpose
integro-differential equation solver",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "542:1--542:2",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00542",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00542",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 January 2018",
ORCID-numbers = "Joshua T. Karpel / 0000-0001-5968-9373",
}
@Article{Landau:2018:PDR,
author = "William Michael Landau",
title = "The \pkg{drake} {R} package: a pipeline toolkit for
reproducibility and high-performance computing",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "21",
pages = "550:1--550:1",
month = jan,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00550",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00550",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 January 2018",
ORCID-numbers = "William Michael Landau / 0000-0003-1878-3253",
}
@Article{Malengier:2018:POH,
author = "Benny Malengier and Pavol Ki{\v{s}}on and James
Tocknell and Claas Abert and Florian Bruckner and
Marc-Antonio Bisotti",
title = "\pkg{ODES}: a high level interface to {ODE} and {DAE}
solvers",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "165:1--165:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00165",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00165",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "23 February 2018",
ORCID-numbers = "Benny Malengier / 0000-0001-8383-8068; James Tocknell
/ 0000-0001-6637-6922; Claas Abert /
0000-0002-4999-0311; Florian Bruckner /
0000-0001-7778-6855",
}
@Article{Hiebert:2018:PCC,
author = "James Hiebert and Alex J. Cannon and Trevor Murdock
and Stephen Sobie and Arelia Werner",
title = "\pkg{ClimDown}: Climate Downscaling in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "360:1--360:1",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00360",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00360",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 February 2018",
ORCID-numbers = "James Hiebert / 0000-0002-4171-9586",
}
@Article{Freire:2018:PPR,
author = "Danilo Freire and Robert Myles McDonnell",
title = "\pkg{prisonbrief}: An {R} package that returns tidy
data from the {World Prison Brief} website",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "361:1--361:1",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00361",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00361",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 February 2018",
ORCID-numbers = "Danilo Freire / 0000-0002-4712-6810",
}
@Article{Mikhael:2018:PMM,
author = "Shadia Mikhael and Calum Gray",
title = "\pkg{Masks2Metrics (M2M)}: A {Matlab} Toolbox for Gold
Standard Morphometrics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "436:1--436:3",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00436",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00436",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 February 2018",
ORCID-numbers = "Shadia Mikhael / 0000-0002-2490-9548",
}
@Article{Makowski:2018:PPP,
author = "Dominique Makowski",
title = "The \pkg{psycho} Package: an Efficient and
Publishing-Oriented Workflow for Psychological
Science",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "470:1--470:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00470",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00470",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 February 2018",
ORCID-numbers = "Dominique Makowski / 0000-0001-5375-9967",
}
@Article{Howard:2018:PAR,
author = "James P. {Howard II}",
title = "Phonetic Algorithms in {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "480:1--480:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00480",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00480",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 February 2018",
ORCID-numbers = "James P. Howard II / 0000-0003-4530-1547",
}
@Article{Owan:2018:PCO,
author = "Parker Owan and Cameron Devine and W. Tony Piaskowy",
title = "\pkg{CoreRobotics}: An object-oriented {C++} library
with cross-language wrappers for cross-platform robot
control",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "489:1--489:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00489",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00489",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 February 2018",
ORCID-numbers = "Parker Owan / 0000-0003-1160-0426",
}
@Article{Lee:2018:PDD,
author = "Jeongseok Lee and Michael X. Grey and Sehoon Ha and
Tobias Kunz and Sumit Jain and Yuting Ye and Siddhartha
S. Srinivasa and Mike Stilman and C. Karen Liu",
title = "\pkg{DART}: Dynamic Animation and Robotics Toolkit",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "500:1--500:3",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00500",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00500",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 February 2018",
ORCID-numbers = "Jeongseok Lee / 0000-0002-2146-7502; Michael X. Grey
/ 0000-0002-8159-2428; Sehoon Ha / 0000-0002-1972-328X;
Tobias Kunz / 0000-0002-5614-2265; Sumit Jain /
0000-0003-2244-0077; Yuting Ye / 0000-0003-2643-7457;
Siddhartha S. Srinivasa / 0000-0002-5091-106X; C. Karen
Liu / 0000-0001-5926-0905",
}
@Article{Bovee:2018:PFT,
author = "Roderick Bovee and Nick Greenfield",
title = "\pkg{Finch}: a tool adding dynamic abundance filtering
to genomic {MinHashing}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "505:1--505:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00505",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00505",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "01 February 2018",
ORCID-numbers = "Roderick Bovee / 0000-0002-8819-9549; Nick Greenfield
/ 0000-0001-8637-406X",
}
@Article{Moerman:2018:PGG,
author = "Kevin M. Moerman",
title = "\pkg{GIBBON}: The {Geometry and Image-Based
Bioengineering add-On}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "506:1--506:4",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00506",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00506",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 February 2018",
ORCID-numbers = "Kevin M. Moerman / 0000-0003-3768-4269",
}
@Article{Gieseke:2018:PPP,
author = "Robert Gieseke and Sven N. Willner and Matthias
Mengel",
title = "\pkg{Pymagicc}: A {Python} wrapper for the simple
climate model {MAGICC}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "516:1--516:3",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00516",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00516",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 February 2018",
ORCID-numbers = "Robert Gieseke / 0000-0002-1236-5109; Sven N. Willner
/ 0000-0001-6798-6247; Matthias Mengel /
0000-0001-6724-9685",
}
@Article{Sochat:2018:EFR,
author = "Vanessa Sochat",
title = "The Experiment Factory: Reproducible Experiment
Containers",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "521:1--521:4",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00521",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00521",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 February 2018",
ORCID-numbers = "Vanessa Sochat / 0000-0002-4387-3819",
}
@Article{Zaghdoudi:2018:PIR,
author = "Taha Zaghdoudi",
title = "\pkg{ivporbit}: An {R} package to estimate the
instrumental variables probit model",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "523:1--523:1",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00523",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00523",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "23 February 2018",
ORCID-numbers = "Taha Zaghdoudi / 0000-0002-4488-5774",
}
@Article{Terhoeven:2018:PRG,
author = "Niklas Terhoeven and J{\"o}rg Schultz and Thomas
Hackl",
title = "\pkg{reper}: Genome-wide identification,
classification and quantification of repetitive
elements without an assembled genome",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "527:1--527:4",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00527",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00527",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 February 2018",
ORCID-numbers = "Niklas Terhoeven / 0000-0002-8669-0000; Thomas Hackl
/ 0000-0002-0022-320X",
}
@Article{Bossek:2018:PGM,
author = "Jakob Bossek",
title = "\pkg{grapherator}: A Modular Multi-Step Graph
Generator",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "528:1--528:3",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00528",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00528",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 February 2018",
ORCID-numbers = "Jakob Bossek / 0000-0002-4121-4668",
}
@Article{Demo:2018:PPP,
author = "Nicola Demo and Marco Tezzele and Gianluigi Rozza",
title = "\pkg{PyDMD}: {Python Dynamic Mode Decomposition}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "530:1--530:3",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00530",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00530",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 February 2018",
ORCID-numbers = "Nicola Demo / 0000-0003-3107-9738; Marco Tezzele /
0000-0001-9747-6328; Gianluigi Rozza /
0000-0002-0810-8812",
}
@Article{Pitkin:2018:PPP,
author = "Matthew Pitkin",
title = "\pkg{psrqpy}: a python interface for querying the
{ATNF} pulsar catalogue",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "538:1--538:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00538",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00538",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 February 2018",
ORCID-numbers = "Matthew Pitkin / 0000-0003-4548-526X",
}
@Article{Bilogur:2018:PMM,
author = "Aleksey Bilogur",
title = "\pkg{Missingno}: a missing data visualization suite",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "547:1--547:4",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00547",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00547",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 February 2018",
ORCID-numbers = "Aleksey Bilogur / 0000-0002-0066-5825",
}
@Article{Reinecke:2018:PGF,
author = "Robert Reinecke",
title = "\pkg{G$^3$M-f} a global gradient-based groundwater
modelling framwork",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "548:1--548:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00548",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00548",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 February 2018",
ORCID-numbers = "Robert Reinecke / 0000-0001-5699-8584",
}
@Article{Aaslin:2018:PCQ,
author = "Matilda {\AA}slin and Monika Brandt and Johan
Dahlberg",
title = "\pkg{CheckQC}: Quick quality control of {Illumina}
sequencing runs",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "556:1--556:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00556",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00556",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 February 2018",
ORCID-numbers = "Matilda {\AA}slin / 0000-0002-2450-6415; Monika
Brandt / 0000-0002-8184-9465; Johan Dahlberg /
0000-0001-6962-1460",
}
@Article{Wrobel:2018:PRR,
author = "Julia Wrobel",
title = "\pkg{register}: Registration for Exponential Family
Functional Data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "557:1--557:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00557",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00557",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 February 2018",
ORCID-numbers = "Julia Wrobel / 0000-0001-6783-1421",
}
@Article{Yu:2018:PEU,
author = "Chi-Lin Yu and Ching-Fan Sheu",
title = "\pkg{EFAshiny}: An User-Friendly Shiny Application for
Exploratory Factor Analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "567:1--567:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00567",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00567",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 February 2018",
ORCID-numbers = "Chi-Lin Yu / 0000-0002-4381-7163; Ching-Fan Sheu /
0000-0002-5978-5768",
}
@Article{Anonymous:2018:PCC,
author = "Anonymous",
title = "\pkg{ChebTools}: {C++11} (and {Python}) tools for
working with {Chebyshev} expansions",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "569:1--569:3",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.1137/110838297",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00569",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 February 2018",
remark = "ERROR: The DOI in this entry resolves to a SIAM Review
article (v55 n2 pp375--396 January 2013).",
}
@Article{LaZerte:2018:PWD,
author = "Stefanie E. LaZerte and Sam Albers",
title = "\pkg{weathercan}: Download and format weather data
from {Environment and Climate Change Canada}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "571:1--571:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00571",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00571",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 February 2018",
ORCID-numbers = "Stefanie E. LaZerte / 0000-0002-7690-8360",
}
@Article{Tocknell:2018:PHT,
author = "James Tocknell",
title = "\pkg{h5preserve}: Thin wrapper around \pkg{h5py},
inspired by \pkg{camel}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "22",
pages = "581:1--581:2",
month = feb,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00581",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00581",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 February 2018",
ORCID-numbers = "James Tocknell / 0000-0001-6637-6922",
}
@Article{Mullen:2018:PUH,
author = "Lincoln A. Mullen and Jordan Bratt",
title = "\pkg{USAboundaries}: Historical and Contemporary
Boundaries of the {United States of America}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "314:1--314:2",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00314",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00314",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 March 2018",
ORCID-numbers = "Lincoln A. Mullen / 0000-0001-5103-6917; Jordan Bratt
/ 0000-0001-9051-7203",
}
@Article{Fachada:2018:PMM,
author = "Nuno Fachada and Agostinho C. Rosa",
title = "\pkg{micompm}: A {MATLAB\slash Octave} toolbox for
multivariate independent comparison of observations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "430:1--430:1",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00430",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00430",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 March 2018",
ORCID-numbers = "Nuno Fachada / 0000-0002-8487-5837; Agostinho C. Rosa
/ 0000-0001-5165-3114",
}
@Article{Mulryne:2018:PPP,
author = "David J. Mulryne and John W. Ronayne",
title = "\pkg{PyTransport}: A {Python} package for the
calculation of inflationary correlation functions",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "494:1--494:2",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00494",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00494",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 March 2018",
ORCID-numbers = "John W. Ronayne / 0000-0001-6464-6466",
}
@Article{Morel:2018:PGG,
author = "Pierre Morel",
title = "\pkg{Gramm}: grammar of graphics plotting in
{Matlab}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "568:1--568:4",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00568",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00568",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 March 2018",
ORCID-numbers = "Pierre Morel / 0000-0003-0984-7016",
}
@Article{Laurinec:2018:PTR,
author = "Peter Laurinec",
title = "\pkg{TSrepr} {R} package: Time Series
Representations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "577:1--577:2",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00577",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00577",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 March 2018",
ORCID-numbers = "Peter Laurinec / 0000-0002-3501-8783",
}
@Article{Hirsch:2018:PPD,
author = "Michael Hirsch",
title = "\pkg{PyMap3D}: {$3$-D} coordinate conversions for
terrestrial and geospace environments",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "580:1--580:2",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00580",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00580",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 March 2018",
ORCID-numbers = "Michael Hirsch / 0000-0002-1637-6526",
}
@Article{Mount:2018:PVR,
author = "John Mount and Nina Zumel",
title = "The \pkg{vtreat} {R} package: a statistically sound
data processor for predictive modeling",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "584:1--584:2",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00584",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00584",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 March 2018",
ORCID-numbers = "John Mount / 0000-0002-3696-2012; Nina Zumel /
0000-0001-8831-0190",
}
@Article{Willcox:2018:PPI,
author = "Donald E. Willcox and Michael Zingale",
title = "\pkg{pynucastro}: an interface to nuclear reaction
rates and code generator for reaction network
equations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "588:1--588:3",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00588",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00588",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 March 2018",
ORCID-numbers = "Donald E. Willcox / 0000-0003-2300-5165; Michael
Zingale / 0000-0001-8401-030X",
}
@Article{Wahls:2018:PFS,
author = "Sander Wahls and Shrinivas Chimmalgi and Peter J.
Prins",
title = "\pkg{FNFT}: A Software Library for Computing Nonlinear
{Fourier} Transforms",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "597:1--597:2",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00597",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00597",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "31 March 2018",
ORCID-numbers = "Sander Wahls / 0000-0001-5159-0918; Shrinivas
Chimmalgi / 0000-0002-5868-3102; Peter J. Prins /
0000-0003-4692-5538",
}
@Article{Datseris:2018:PDJ,
author = "George Datseris",
title = "\pkg{DynamicalSystems.jl}: A {Julia} software library
for chaos and nonlinear dynamics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "598:1--598:5",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.5334/jors.151",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00598",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 March 2018",
ORCID-numbers = "George Datseris / 0000-0002-6427-2385",
}
@Article{Bender:2018:PCC,
author = "Andreas Bender and Alexander Bauer",
title = "\pkg{coalitions}: Coalition probabilities in
multi-party democracies",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "606:1--606:2",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00606",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00606",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 March 2018",
ORCID-numbers = "Andreas Bender / 0000-0001-5628-8611; Alexander Bauer
/ 0000-0003-3495-5131",
}
@Article{Vrbancic:2018:PNP,
author = "Grega Vrban{\v{c}}i{\v{c}} and Lucija Brezo{\v{c}}nik
and Uro{\v{s}} Mlakar and Du{\v{s}}an Fister and Iztok
{Fister, Jr.}",
title = "\pkg{NiaPy}: {Python} microframework for building
nature-inspired algorithms",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "613:1--613:3",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00613",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00613",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 March 2018",
ORCID-numbers = "Grega Vrban{\v{c}}i{\v{c}} / 0000-0003-0723-3889;
Lucija Brezo{\v{c}}nik / 0000-0002-3622-428X;
Uro{\v{s}} Mlakar / 0000-0002-4278-6078; Du{\v{s}}an
Fister / 0000-0002-9604-0554; Iztok Fister, Jr. /
0000-0002-6418-1272",
}
@Article{Thorley:2018:PCR,
author = "Joe Thorley",
title = "\pkg{checkr}: An {R} package for Assertive
Programming",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "624:1--624:1",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00624",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00624",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 March 2018",
ORCID-numbers = "Joe Thorley / 0000-0002-7683-4592",
}
@Article{Vantas:2018:PHR,
author = "Konstantinos Vantas",
title = "\pkg{hydroscoper}: {R} interface to the {Greek
National Data Bank for Hydrological and Meteorological
Information}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "625:1--625:2",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00625",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00625",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 March 2018",
ORCID-numbers = "Konstantinos Vantas / 0000-0001-6387-8791",
}
@Article{Nolan:2018:PIR,
author = "Rory Nolan and Sergi Padilla-Parra",
title = "\pkg{ijtiff}: An {R} package providing {TIFF I/O} for
{ImageJ} users",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "633:1--633:2",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00633",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00633",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "16 March 2018",
ORCID-numbers = "Rory Nolan / 0000-0002-5239-4043; Sergi Padilla-Parra
/ 0000-0002-8010-9481",
}
@Article{Gasparini:2018:PCR,
author = "Alessandro Gasparini",
title = "\pkg{comorbidity}: An {R} package for computing
comorbidity scores",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "648:1--648:3",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00648",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00648",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 March 2018",
ORCID-numbers = "Alessandro Gasparini / 0000-0002-8319-7624",
}
@Article{Mullen:2018:FCT,
author = "Lincoln A. Mullen and Kenneth Benoit and Os Keyes and
Dmitry Selivanov and Jeffrey Arnold",
title = "Fast, Consistent Tokenization of Natural Language
Text",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "23",
pages = "655:1--655:3",
month = mar,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00655",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00655",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 March 2018",
ORCID-numbers = "Lincoln A. Mullen / 0000-0001-5103-6917; Kenneth
Benoit / 0000-0002-0797-564X; Os Keyes /
0000-0001-5196-609X; Jeffrey Arnold /
0000-0001-9953-3904",
}
@Article{Dahlgren:2018:PCP,
author = "Bj{\"o}rn Dahlgren",
title = "\pkg{ChemPy}: A package useful for chemistry written
in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "565:1--565:2",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00565",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00565",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 April 2018",
ORCID-numbers = "Bj{\"o}rn Dahlgren / 0000-0003-0596-0222",
}
@Article{Ibarra-Espinosa:2018:PER,
author = "Sergio Ibarra-Espinosa and Daniel Schuch and Edmilson
Dias de Freitas",
title = "\pkg{eixport}: An {R} package to export emissions to
atmospheric models",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "607:1--607:4",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00607",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00607",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "25 April 2018",
ORCID-numbers = "Sergio Ibarra-Espinosa / 0000-0002-3162-1905; Daniel
Schuch / 0000-0001-5977-4519; Edmilson Dias de Freitas
/ 0000-0001-8783-2747",
}
@Article{Cardellini:2018:PTO,
author = "Giuseppe Cardellini and Chris Mutel",
title = "\pkg{Temporalis}: an open source software for dynamic
{LCA}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "612:1--612:2",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00612",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00612",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "17 April 2018",
ORCID-numbers = "Giuseppe Cardellini / 0000-0003-0442-3580; Chris
Mutel / 0000-0002-7898-9862",
}
@Article{Mogensen:2018:POM,
author = "Patrick K. Mogensen and Asbj{\o}rn N. Riseth",
title = "\pkg{Optim}: A mathematical optimization package for
{Julia}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "615:1--615:3",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00615",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00615",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 April 2018",
ORCID-numbers = "Patrick K. Mogensen / 0000-0002-4910-1932; Asbj{\o}rn
N. Riseth / 0000-0002-5861-7885",
}
@Article{Amsel:2018:PMM,
author = "Daniel Amsel and Andr{\'e} Billion and Andreas
Vilcinskas and Frank F{\"o}rster",
title = "\pkg{microPIECE} --- {microRNA} pipeline enhanced by
{CLIP} experiments",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "616:1--616:4",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00616",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00616",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "10 April 2018",
ORCID-numbers = "Daniel Amsel / 0000-0002-0512-9802; Andreas
Vilcinskas / 0000-0001-8276-4968; Frank F{\"o}rster /
0000-0003-4166-5423",
}
@Article{Dennis:2018:MFI,
author = "Louise A. Dennis",
title = "The {MCAPL} Framework including the {Agent
Infrastructure Layer} and {Agent Java Pathfinder}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "617:1--617:2",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00617",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/java2010.bib;
https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00617",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 April 2018",
}
@Article{Raschka:2018:PMP,
author = "Sebastian Raschka",
title = "\pkg{MLxtend}: Providing machine learning and data
science utilities and extensions to {Python}'s
scientific computing stack",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "638:1--638:2",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00638",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00638",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 April 2018",
ORCID-numbers = "Sebastian Raschka / 0000-0001-6989-4493",
}
@Article{Ben-Ari:2018:PLS,
author = "Mordechai (Moti) Ben-Ari",
title = "\pkg{LearnSAT}: A {SAT} Solver for Education",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "639:1--639:2",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00639",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00639",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 April 2018",
ORCID-numbers = "Mordechai (Moti) Ben-Ari / 0000-0002-2091-5107",
}
@Article{Youngflesh:2018:PMT,
author = "Casey Youngflesh",
title = "\pkg{MCMCvis}: Tools to Visualize, Manipulate, and
Summarize {MCMC} Output",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "640:1--640:3",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00640",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00640",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "10 April 2018",
ORCID-numbers = "Casey Youngflesh / 0000-0001-6343-3311",
}
@Article{Finn:2018:POO,
author = "Caley Finn",
title = "\pkg{OpenEPSim}: An Open Exclusion Process Simulation
Tool",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "650:1--650:2",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00650",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00650",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 April 2018",
ORCID-numbers = "Caley Finn / 0000-0001-8593-1987",
}
@Article{Hucka:2018:PSS,
author = "Michael Hucka",
title = "\pkg{Spiral}: splitters for identifiers in source code
files",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "653:1--653:3",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00653",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00653",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 April 2018",
ORCID-numbers = "Michael Hucka / 0000-0001-9105-5960",
}
@Article{Tang:2018:PAR,
author = "Yuan Tang",
title = "\pkg{autoplotly}: An {R} package for automatic
generation of interactive visualizations for
statistical results",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "657:1--657:2",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00657",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00657",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 April 2018",
ORCID-numbers = "Yuan Tang / 0000-0001-5243-233X",
}
@Article{Rose:2018:PCP,
author = "Brian E. J. Rose",
title = "\pkg{CLIMLAB}: a {Python} toolkit for interactive,
process-oriented climate modeling",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "659:1--659:2",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00659",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00659",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 April 2018",
ORCID-numbers = "Brian E. J. Rose / 0000-0002-9961-3821",
}
@Article{Demo:2018:PEE,
author = "Nicola Demo and Marco Tezzele and Gianluigi Rozza",
title = "\pkg{EZyRB}: {Easy Reduced Basis} method",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "661:1--661:3",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00661",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00661",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 April 2018",
ORCID-numbers = "Nicola Demo / 0000-0003-3107-9738; Marco Tezzele /
0000-0001-9747-6328; Gianluigi Rozza /
0000-0002-0810-8812",
}
@Article{Ginn:2018:PQR,
author = "Jasper Ginn",
title = "\pkg{qualtRics}: retrieve survey data using the
{Qualtrics API}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "690:1--690:1",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00690",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00690",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 April 2018",
ORCID-numbers = "Jasper Ginn / 0000-0002-5019-2923",
}
@Article{Hoffimann:2018:PGJ,
author = "J{\'u}lio Hoffimann",
title = "\pkg{GeoStats.jl} --- High-performance geostatistics
in {Julia}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "692:1--692:4",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00692",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00692",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "25 April 2018",
ORCID-numbers = "J{\'u}lio Hoffimann / 0000-0003-2789-297X",
}
@Article{Zeki:2018:PEE,
author = "Sebastian S. Zeki",
title = "\pkg{EndoMineR} for the extraction of endoscopic and
associated pathology data from medical reports",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "24",
pages = "701:1--701:2",
month = apr,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00701",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00701",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 April 2018",
ORCID-numbers = "Sebastian S. Zeki / 0000-0003-1673-2663",
}
@Article{Allevius:2018:PSS,
author = "Benjamin All{\'e}vius",
title = "\pkg{scanstatistics}: space-time anomaly detection
using scan statistics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "515:1--515:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00515",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00515",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 May 2018",
ORCID-numbers = "Benjamin All{\'e}vius / 0000-0002-0927-7183",
}
@Article{Chuang:2018:PPT,
author = "Pi-Yueh Chuang and Olivier Mesnard and Anush Krishnan
and Lorena A. Barba",
title = "\pkg{PetIBM}: toolbox and applications of the
immersed-boundary method on distributed-memory
architectures",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "558:1--558:5",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00558",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00558",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 May 2018",
ORCID-numbers = "Pi-Yueh Chuang / 0000-0001-6330-2709; Olivier Mesnard
/ 0000-0001-5335-7853; Anush Krishnan /
0000-0001-6409-7022; Lorena A. Barba /
0000-0001-5812-2711",
}
@Article{Ferres:2018:PPA,
author = "Ignacio Ferr{\'e}s and Gregorio Iraola",
title = "\pkg{Phylen}: automatic phylogenetic reconstruction
using the {EggNOG} database",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "593:1--593:3",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00593",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00593",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 May 2018",
ORCID-numbers = "Ignacio Ferr{\'e}s / 0000-0003-0910-6568; Gregorio
Iraola / 0000-0002-6516-3404",
}
@Article{Hucka:2018:PNN,
author = "Michael Hucka",
title = "\pkg{Nostril}: A nonsense string evaluator written in
{Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "596:1--596:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00596",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00596",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 May 2018",
ORCID-numbers = "Michael Hucka / 0000-0001-9105-5960",
}
@Article{Innes:2018:PFE,
author = "Mike Innes",
title = "\pkg{Flux}: Elegant machine learning with {Julia}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "602:1--602:1",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00602",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00602",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 May 2018",
ORCID-numbers = "Mike Innes / 0000-0003-0788-0242",
}
@Article{Hudak:2018:OOW,
author = "Dave Hudak and Doug Johnson and Alan Chalker and
Jeremy Nicklas and Eric Franz and Trey Dockendorf and
Brian L. McMichael",
title = "Open {OnDemand}: A web-based client portal for {HPC}
centers",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "622:1--622:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00622",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00622",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 May 2018",
ORCID-numbers = "Dave Hudak / 0000-0002-9043-0850; Doug Johnson /
0000-0002-4331-8508; Alan Chalker /
0000-0002-5475-8779; Jeremy Nicklas /
0000-0003-3208-7588; Eric Franz / 0000-0002-9662-412X;
Trey Dockendorf / 0000-0002-5494-0968; Brian L.
McMichael / 0000-0001-7455-6691",
}
@Article{Smith:2018:PHC,
author = "Andrew P. Smith",
title = "\pkg{humanleague}: a {C++} microsynthesis package with
{R} and {Python} interfaces",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "629:1--629:1",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00629",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00629",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 May 2018",
ORCID-numbers = "Andrew P. Smith / 0000-0002-9951-6642",
}
@Article{Brown:2018:PHP,
author = "Ryan C. Brown and Joshua Moser",
title = "\pkg{HSImage}: A {Python} and {C++} library to allow
interaction with {ENVI-BIL} hyperspectral images",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "630:1--630:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00630",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00630",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 May 2018",
ORCID-numbers = "Ryan C. Brown / 0000-0002-3832-775X",
}
@Article{Ortiz-Gil:2018:MFC,
author = "Amelia Ortiz-Gil and Jordi Burguet-Castell",
title = "Mapelia and friends: create {$3$D} models from maps",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "660:1--660:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00660",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00660",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 May 2018",
ORCID-numbers = "Amelia Ortiz-Gil / 0000-0003-1485-0252; Jordi
Burguet-Castell / 0000-0002-9198-5380",
}
@Article{Chennu:2018:PMM,
author = "Arjun Chennu",
title = "\pkg{MicroBenthos}: a modeling framework for microbial
benthic ecology",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "674:1--674:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00674",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00674",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 May 2018",
ORCID-numbers = "Arjun Chennu / 0000-0002-0389-5589",
}
@Article{Andersen:2018:PMM,
author = "Mikkel Meyer Andersen",
title = "\pkg{malan}: {MAle Lineage ANalysis}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "684:1--684:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00684",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00684",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 May 2018",
ORCID-numbers = "Mikkel Meyer Andersen / 0000-0002-0234-0266",
}
@Article{Blankrot:2018:PPS,
author = "Boaz Blankrot and Clemens Heitzinger",
title = "\pkg{ParticleScattering}: Solving and optimizing
multiple-scattering problems in {Julia}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "691:1--691:3",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00691",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00691",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 May 2018",
ORCID-numbers = "Boaz Blankrot / 0000-0003-3364-9298; Clemens
Heitzinger / 0000-0003-1613-5164",
}
@Article{Anhoj:2018:PQQ,
author = "Jacob Anh{\o}j",
title = "\pkg{qicharts2}: Quality Improvement Charts for {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "699:1--699:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00699",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00699",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "17 May 2018",
ORCID-numbers = "Jacob Anh{\o}j / 0000-0002-7701-1774",
}
@Article{Pearse:2018:PSD,
author = "William D. Pearse and Scott A. Chamberlain",
title = "\pkg{Suppdata}: Downloading Supplementary Data from
Published Manuscripts",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "721:1--721:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00721",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00721",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 May 2018",
ORCID-numbers = "William D. Pearse / 0000-0002-6241-3164; Scott A.
Chamberlain / 0000-0003-1444-9135",
}
@Article{Haghighi:2018:PPM,
author = "Sepand Haghighi and Masoomeh Jasemi and Shaahin
Hessabi and Alireza Zolanvari",
title = "\pkg{PyCM}: Multiclass confusion matrix library in
{Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "729:1--729:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00729",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00729",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 May 2018",
ORCID-numbers = "Sepand Haghighi / 0000-0001-9450-2375; Masoomeh
Jasemi / 0000-0002-4831-1698; Shaahin Hessabi /
0000-0003-3193-2567; Alireza Zolanvari /
0000-0003-2367-8343",
}
@Article{Turner:2018:PQR,
author = "Stephen D. Turner",
title = "\pkg{qqman}: an {R} package for visualizing {GWAS}
results using {Q-Q} and {Manhattan} plots",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "731:1--731:2",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00731",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00731",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 May 2018",
ORCID-numbers = "Stephen D. Turner / 0000-0001-9140-9028",
}
@Article{James:2018:PDP,
author = "Ryan G. James and Christopher J. Ellison and James P.
Crutchfield",
title = "\pkg{dit}: a {Python} package for discrete information
theory",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "738:1--738:3",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00738",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00738",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "31 May 2018",
ORCID-numbers = "Ryan G. James / 0000-0003-2149-9085",
}
@Article{Izzo:2018:VMT,
author = "Richard Izzo and David Steinman and Simone Manini and
Luca Antiga",
title = "The Vascular Modeling Toolkit: A {Python} Library for
the Analysis of Tubular Structures in Medical Images",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "25",
pages = "745:1--745:5",
month = may,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00745",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00745",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 May 2018",
ORCID-numbers = "Richard Izzo / 0000-0002-0811-6513; David Steinman /
0000-0002-7963-1168; Simone Manini /
0000-0003-4350-659X; Luca Antiga /
0000-0002-8367-227X",
}
@Article{Anonymous:2018:PKE,
author = "Anonymous",
title = "\pkg{kima}: Exoplanet detection in radial velocities",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "487:1--487:3",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00487",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00487",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "19 June 2018",
}
@Article{Cully:2018:PLF,
author = "Antoine Cully and Konstantinos Chatzilygeroudis and
Federico Allocati and Jean-Baptiste Mouret",
title = "\pkg{Limbo}: A Flexible High-performance Library for
{Gaussian} Processes modeling and Data-Efficient
Optimization",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "545:1--545:3",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00545",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00545",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "26 June 2018",
ORCID-numbers = "Antoine Cully / 0000-0002-3190-7073; Konstantinos
Chatzilygeroudis / 0000-0003-3585-1027; Jean-Baptiste
Mouret / 0000-0002-2513-027X",
}
@Article{Doddridge:2018:PAI,
author = "Edward W. Doddridge and Alexey Radul",
title = "\pkg{Aronnax}: An idealised isopycnal ocean model",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "592:1--592:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.1016/j.ocemod.2017.03.012",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00592",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 June 2018",
ORCID-numbers = "Edward W. Doddridge / 0000-0002-6097-5729",
}
@Article{Fasnacht:2018:PMP,
author = "Laurent Fasnacht",
title = "\pkg{mmappickle}: {Python 3} module to store
memory-mapped \pkg{numpy} array in \pkg{pickle}
format",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "651:1--651:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00651",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00651",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 June 2018",
ORCID-numbers = "Laurent Fasnacht / 0000-0002-9853-8209",
}
@Article{Wood:2018:PQQ,
author = "Tobias C. Wood",
title = "\pkg{QUIT}: {QUantitative} Imaging Tools",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "656:1--656:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00656",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00656",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 June 2018",
ORCID-numbers = "Tobias C. Wood / 0000-0001-7640-5520",
}
@Article{Krebber:2018:PMP,
author = "Manuel Krebber and Henrik Barthels",
title = "\pkg{MatchPy}: Pattern Matching in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "670:1--670:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00670",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00670",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 June 2018",
ORCID-numbers = "Manuel Krebber / 0000-0001-5038-1102; Henrik Barthels
/ 0000-0001-6744-3605",
}
@Article{Green:2018:PDP,
author = "Gregory M. Green",
title = "\pkg{dustmaps}: A {Python} interface for maps of
interstellar dust",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "695:1--695:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00695",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00695",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 June 2018",
ORCID-numbers = "Gregory M. Green / 0000-0001-5417-2260",
}
@Article{Wette:2018:POL,
author = "Karl Wette and Reinhard Prix and David Keitel and
Matthew Pitkin and Christoph Dreissigacker and John
T. Whelan and Paola Leaci",
title = "\pkg{OctApps}: a library of {Octave} functions for
continuous gravitational-wave data analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "707:1--707:3",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00707",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00707",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 June 2018",
ORCID-numbers = "Karl Wette / 0000-0002-4394-7179; Reinhard Prix /
0000-0002-3789-6424; David Keitel /
0000-0002-2824-626X; Matthew Pitkin /
0000-0003-4548-526X; John T. Whelan /
0000-0001-5710-6576",
}
@Article{Iravanian:2018:PFT,
author = "Shahriar Iravanian",
title = "\pkg{fib-tf}: A {TensorFlow}-based Cardiac
Electrophysiology Simulator",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "719:1--719:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00719",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00719",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "01 June 2018",
ORCID-numbers = "Shahriar Iravanian / 0000-0003-2132-1543",
}
@Article{Curtin:2018:PMF,
author = "Ryan R. Curtin and Marcus Edel and Mikhail Lozhnikov
and Yannis Mentekidis and Sumedh Ghaisas and Shangtong
Zhang",
title = "\pkg{mlpack 3}: a fast, flexible machine learning
library",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "726:1--726:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00726",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00726",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "18 June 2018",
ORCID-numbers = "Ryan R. Curtin / 0000-0002-9903-8214; Marcus Edel /
0000-0001-5445-7303; Mikhail Lozhnikov /
0000-0002-8727-0091; Yannis Mentekidis /
0000-0003-3860-9885; Sumedh Ghaisas /
0000-0003-3753-9029; Shangtong Zhang /
0000-0003-4255-1364",
}
@Article{Mirzaev:2018:PEP,
author = "Inom Mirzaev and Drew F. K. Williamson and Jacob G.
Scott",
title = "\pkg{egtplot}: A {Python} Package for Three-Strategy
Evolutionary Games",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "735:1--735:4",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00735",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00735",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "17 June 2018",
ORCID-numbers = "Inom Mirzaev / 0000-0003-1493-1802; Drew F. K.
Williamson / 0000-0003-1745-8846; Jacob G. Scott /
0000-0003-2971-7673",
}
@Article{Gasparini:2018:PRS,
author = "Alessandro Gasparini",
title = "\pkg{rsimsum}: Summarise results from {Monte Carlo}
simulation studies",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "739:1--739:3",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00739",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00739",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 June 2018",
ORCID-numbers = "Alessandro Gasparini / 0000-0002-8319-7624",
}
@Article{Bourbeau:2018:PPP,
author = "James Bourbeau and Zigfried Hampel-Arias",
title = "\pkg{PyUnfold}: A {Python} package for iterative
unfolding",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "741:1--741:3",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00741",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00741",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 June 2018",
ORCID-numbers = "James Bourbeau / 0000-0003-2164-7789; Zigfried
Hampel-Arias / 0000-0003-0253-9117",
}
@Article{Andersen:2018:DLM,
author = "Mikkel Meyer Andersen",
title = "Discrete {Laplace} mixture model with applications in
forensic genetics",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "748:1--748:3",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00748",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00748",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 June 2018",
ORCID-numbers = "Mikkel Meyer Andersen / 0000-0002-0234-0266",
}
@Article{Smith:2018:POP,
author = "Daniel G. A. Smith and Johnnie Gray",
title = "\pkg{opt\_einsum} --- A {Python} package for
optimizing contraction order for einsum-like
expressions",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "753:1--753:3",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00753",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00753",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 June 2018",
ORCID-numbers = "Daniel G. A. Smith / 0000-0001-8626-0900; Johnnie
Gray / 0000-0001-9461-3024",
}
@Article{Ludecke:2018:PSD,
author = "Daniel L{\"u}decke",
title = "\pkg{sjmisc}: Data and Variable Transformation
Functions",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "754:1--754:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00754",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00754",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 June 2018",
ORCID-numbers = "Daniel L{\"u}decke / 0000-0002-8895-3206",
}
@Article{Drost:2018:PPI,
author = "Hajk-Georg Drost",
title = "\pkg{Philentropy}: Information Theory and Distance
Quantification with {R}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "765:1--765:4",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00765",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00765",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "11 June 2018",
ORCID-numbers = "Hajk-Georg Drost / 0000-0002-1567-306X",
}
@Article{Laros:2018:GBF,
author = "Jeroen F. J. Laros",
title = "General binary file parser",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "766:1--766:1",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00766",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00766",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "21 June 2018",
}
@Article{Ludecke:2018:PGT,
author = "Daniel L{\"u}decke",
title = "\pkg{ggeffects}: Tidy Data Frames of Marginal Effects
from Regression Models",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "772:1--772:5",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00772",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00772",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 June 2018",
ORCID-numbers = "Daniel L{\"u}decke / 0000-0002-8895-3206",
}
@Article{Jackson:2018:PGB,
author = "Adam J. Jackson and Alex M. Ganose and Anna Regoutz
and Russell G. Egdell and David O. Scanlon",
title = "\pkg{Galore}: Broadening and weighting for simulation
of photoelectron spectroscopy",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "773:1--773:6",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00773",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00773",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 June 2018",
ORCID-numbers = "Adam J. Jackson / 0000-0001-5272-6530; Alex M. Ganose
/ 0000-0002-4486-3321; Anna Regoutz /
0000-0002-3747-3763; David O. Scanlon /
0000-0001-9174-8601",
}
@Article{Sochat:2018:PHC,
author = "Vanessa Sochat",
title = "\pkg{HelpMe} Command Line Helper Utility",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "775:1--775:3",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00775",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00775",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 June 2018",
ORCID-numbers = "Vanessa Sochat / 0000-0002-4387-3819",
}
@Article{Hagan:2018:PPO,
author = "David H. Hagan and Andrew Tolmie and Jakub Trochim",
title = "\pkg{py-opc}: operate the {Alphasense OPC-N2} from a
{raspberry pi} or other popular microcontrollers\slash
microcomputers",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "782:1--782:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00782",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00782",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "29 June 2018",
ORCID-numbers = "David H. Hagan / 0000-0001-5111-4671",
}
@Article{Molnar:2018:PIR,
author = "Christoph Molnar and Giuseppe Casalicchio and Bernd
Bischl",
title = "\pkg{iml}: An {R} package for Interpretable Machine
Learning",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "786:1--786:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00786",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00786",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 July 2018",
ORCID-numbers = "Christoph Molnar / 0000-0003-2331-868X; Giuseppe
Casalicchio / 0000-0001-5324-5966; Bernd Bischl /
0000-0001-6002-6980",
}
@Article{Wilkinson:2018:PPR,
author = "Shaun P. Wilkinson and Simon K. Davy",
title = "\pkg{phylogram}: an {R} package for phylogenetic
analysis with nested lists",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "26",
pages = "790:1--790:2",
month = jun,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00790",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00790",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 June 2018",
ORCID-numbers = "Shaun P. Wilkinson / 0000-0002-7332-7931; Simon K.
Davy / 0000-0003-3584-5356",
}
@Article{LeBeau:2018:PPS,
author = "Brandon LeBeau",
title = "\pkg{pdfsearch}: Search Tools for {PDF} Files",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "668:1--668:2",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00668",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00668",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 July 2018",
ORCID-numbers = "Brandon LeBeau / 0000-0002-1265-8761",
}
@Article{Haghighi:2018:POO,
author = "Sepand Haghighi and Kasra Askari and Sarmin Hamidi and
Mohammad Mahdi Rahimi",
title = "\pkg{OPEM}: Open Source {PEM} Cell Simulation Tool",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "676:1--676:4",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00676",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00676",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 July 2018",
ORCID-numbers = "Sepand Haghighi / 0000-0001-9450-2375; Kasra Askari /
0000-0001-7978-9291; Sarmin Hamidi /
0000-0002-4621-0180; Mohammad Mahdi Rahimi /
0000-0002-6614-4512",
}
@Article{Neches:2018:PSF,
author = "Russell Y. Neches and Camille Scott",
title = "\pkg{SuchTree}: Fast, thread-safe computations with
phylogenetic trees",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "678:1--678:3",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00678",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00678",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 July 2018",
ORCID-numbers = "Russell Y. Neches / 0000-0002-2055-8381; Camille
Scott / 0000-0001-8822-8779",
}
@Article{Brancotte:2018:RTB,
author = "Bryan Brancotte and Christophe Blanchet and Herv{\'e}
M{\'e}nager",
title = "A reusable tree-based web-visualization to browse
{EDAM} ontology, and contribute to it",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "698:1--698:4",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00698",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00698",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 July 2018",
ORCID-numbers = "Bryan Brancotte / 0000-0001-8669-5525; Herv{\'e}
M{\'e}nager / 0000-0002-7552-1009",
}
@Article{Versypt:2018:PBO,
author = "Ashlee N. Ford Versypt and James D. Crall and Biswadip
Dey",
title = "\pkg{BeeNestABM}: An open-source agent-based model of
spatiotemporal distribution of bumblebees in nests",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "718:1--718:2",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00718",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00718",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "03 July 2018",
ORCID-numbers = "Ashlee N. Ford Versypt / 0000-0001-9059-5703",
}
@Article{Oliver:2018:PCW,
author = "Hilary J. Oliver and Matthew Shin and Oliver
Sanders",
title = "\pkg{Cylc}: A Workflow Engine for Cycling Systems",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "737:1--737:2",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00737",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00737",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 July 2018",
ORCID-numbers = "Hilary J. Oliver / 0000-0002-5715-5279; Matthew Shin
/ 0000-0002-5904-7511; Oliver Sanders /
0000-0001-6916-7034",
}
@Article{Torfi:2018:PSL,
author = "Amirsina Torfi",
title = "\pkg{SpeechPy} --- A Library for Speech Processing and
Recognition",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "749:1--749:5",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00749",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00749",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "23 July 2018",
ORCID-numbers = "Amirsina Torfi / 0000-0003-2282-4361",
}
@Article{vanderHam:2018:PSD,
author = "Ruud van der Ham",
title = "\pkg{salabim}: discrete event simulation and animation
in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "767:1--767:2",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00767",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00767",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 July 2018",
ORCID-numbers = "Ruud van der Ham / 0000-0001-7696-8059",
}
@Article{Ramasubramani:2018:PRP,
author = "Vyas Ramasubramani and Sharon C. Glotzer",
title = "\pkg{rowan}: A {Python} package for working with
quaternions",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "787:1--787:3",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00787",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00787",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "30 July 2018",
ORCID-numbers = "Vyas Ramasubramani / 0000-0001-5181-9532; Sharon C.
Glotzer / 0000-0002-7197-0085",
}
@Article{Schlegel:2018:PHC,
author = "Robert W. Schlegel and Albertus J. Smit",
title = "\pkg{heatwaveR}: A central algorithm for the detection
of heatwaves and cold-spells",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "821:1--821:2",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00821",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00821",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "31 July 2018",
ORCID-numbers = "Robert W. Schlegel / 0000-0002-0705-1287; Albertus J.
Smit / 0000-0002-3799-6126",
}
@Article{Odell:2018:PNA,
author = "Evan Odell",
title = "\pkg{nomisr}: Access {Nomis UK} Labour Market Data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "27",
pages = "859:1--859:2",
month = jul,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00859",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00859",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 July 2018",
ORCID-numbers = "Evan Odell / 0000-0003-1845-808X",
}
@Article{Frost:2018:PPJ,
author = "Jarvist Moore Frost",
title = "\pkg{PolaronMobility.jl}: Implementation of the
{Feynman} variational polaron model",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "566:1--566:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00566",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00566",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "05 August 2018",
ORCID-numbers = "Jarvist Moore Frost / 0000-0003-1938-4430",
}
@Article{Tsyganov:2018:PRP,
author = "Kirill Tsyganov and Andrew James Perry and Stuart
Kenneth Archer and David Powell",
title = "\pkg{RNAsik}: A Pipeline for complete and reproducible
{RNA-seq} analysis that runs anywhere with speed and
ease",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "583:1--583:3",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00583",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00583",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 August 2018",
ORCID-numbers = "Kirill Tsyganov / 0000-0002-9195-2626; Andrew James
Perry / 0000-0001-9256-6068; Stuart Kenneth Archer /
0000-0003-0450-1243; David Powell /
0000-0002-6639-6250",
}
@Article{Hughes:2018:PMP,
author = "Momar G-O Hughes",
title = "\pkg{MCycle}: A {Python} package for {$1$D} sizing and
analysis of thermodynamic power cycles",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "710:1--710:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00710",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00710",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "02 August 2018",
ORCID-numbers = "Momar G-O Hughes / 0000-0002-6928-2187",
}
@Article{Reghenzani:2018:PCM,
author = "Federico Reghenzani and Giuseppe Massari and William
Fornaciari",
title = "\pkg{chronovise}: Measurement-Based Probabilistic
Timing Analysis framework",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "711:1--711:3",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.1029/1999WR900330",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00711",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 August 2018",
ORCID-numbers = "Federico Reghenzani / 0000-0002-1888-9579; Giuseppe
Massari / 0000-0002-2302-4297; William Fornaciari /
0000-0001-8294-730X",
}
@Article{Ganose:2018:PSC,
author = "Alex M. Ganose and Adam J. Jackson and David O.
Scanlon",
title = "\pkg{sumo}: Command-line tools for plotting and
analysis of periodic ab initio calculations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "717:1--717:3",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00717",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00717",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 August 2018",
ORCID-numbers = "Alex M. Ganose / 0000-0002-4486-3321; Adam J. Jackson
/ 0000-0001-5272-6530; David O. Scanlon /
0000-0001-9174-8601",
}
@Article{Topping:2018:PPA,
author = "David Topping and Paul Connolly and Jonathan Reid",
title = "\pkg{PyBox}: An automated box-model generator for
atmospheric chemistry and aerosol simulations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "755:1--755:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00755",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00755",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 August 2018",
ORCID-numbers = "David Topping / 0000-0001-8247-9649; Paul Connolly /
0000-0002-3294-7405; Jonathan Reid /
0000-0001-6022-1778",
}
@Article{Whalley:2018:PEE,
author = "Lucy D. Whalley",
title = "\pkg{effmass}: An effective mass package",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "797:1--797:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00797",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00797",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 August 2018",
ORCID-numbers = "Lucy D. Whalley / 0000-0002-2992-9871",
}
@Article{Smith:2018:PUU,
author = "Andrew P. Smith and Tom Russell",
title = "\pkg{ukpopulation}: unified national and subnational
population estimates and projections, including
variants",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "803:1--803:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00803",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00803",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 August 2018",
ORCID-numbers = "Andrew P. Smith / 0000-0002-9951-6642; Tom Russell /
0000-0002-0081-400X",
}
@Article{Goldbaum:2018:PUH,
author = "Nathan J. Goldbaum and John A. ZuHone and Matthew J.
Turk and Kacper Kowalik and Anna L. Rosen",
title = "\pkg{unyt}: Handle, manipulate, and convert data with
units in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "809:1--809:11",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00809",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00809",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 August 2018",
ORCID-numbers = "Nathan J. Goldbaum / 0000-0001-5557-267X; John A.
ZuHone / 0000-0003-3175-2347; Matthew J. Turk /
0000-0002-5294-0198; Kacper Kowalik /
0000-0003-1709-3744; Anna L. Rosen /
0000-0003-4423-0660",
}
@Article{Coene:2018:PSR,
author = "Jean-Philippe Coene",
title = "\pkg{sigmajs}: An {R} \pkg{htmlwidget} interface to
the \pkg{sigma.js} visualization library",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "814:1--814:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00814",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00814",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "10 August 2018",
ORCID-numbers = "Jean-Philippe Coene / 0000-0002-6637-4107",
}
@Article{Moore:2018:PSS,
author = "Jason K. Moore and Mont Hubbard",
title = "\pkg{skijumpdesign}: A Ski Jump Design Tool for
Specified Equivalent Fall Height",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "818:1--818:3",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00818",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00818",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 August 2018",
ORCID-numbers = "Jason K. Moore / 0000-0002-8698-6143; Mont Hubbard /
0000-0001-8321-6576",
}
@Article{Sherman:2018:PBA,
author = "Marcus D. Sherman and Ryan E. Mills",
title = "\pkg{BAMnostic}: an {OS}-agnostic toolkit for genomic
sequence analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "826:1--826:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00826",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00826",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 August 2018",
ORCID-numbers = "Marcus D. Sherman / 0000-0002-0243-4609; Ryan E.
Mills / 0000-0003-3425-6998",
}
@Article{Taylor:2018:PPP,
author = "Shawn David Taylor",
title = "\pkg{pyPhenology}: A python framework for plant
phenology modelling",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "827:1--827:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00827",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00827",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 August 2018",
ORCID-numbers = "Shawn David Taylor / 0000-0002-6178-6903",
}
@Article{Waggoner:2018:PHP,
author = "Philip D. Waggoner",
title = "The \pkg{hhi} Package: Streamlined Calculation and
Visualization of {Herfindahl--Hirschman} Index Scores",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "828:1--828:5",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00828",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00828",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 August 2018",
ORCID-numbers = "Philip D. Waggoner / 0000-0002-7825-7573",
}
@Article{Ostrouchov:2018:PPA,
author = "Christopher Ostrouchov and Yanwen Zhang and William J.
Weber",
title = "\pkg{pysrim}: Automation, Analysis, and Plotting of
{SRIM} Calculations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "829:1--829:3",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00829",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00829",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "02 August 2018",
ORCID-numbers = "Christopher Ostrouchov / 0000-0002-8734-4564; Yanwen
Zhang / 0000-0003-1833-3885; William J. Weber /
0000-0002-9017-7365",
}
@Article{Wiley:2018:PRR,
author = "David Wiley",
title = "\pkg{RISE}: An {R} package for {RISE} analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "846:1--846:1",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00846",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00846",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 August 2018",
ORCID-numbers = "David Wiley / 0000-0001-6722-4744",
}
@Article{Arel-Bundock:2018:PCR,
author = "Vincent Arel-Bundock and Nils Enevoldsen and C. J.
Yetman",
title = "\pkg{countrycode}: An {R} package to convert country
names and country codes",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "848:1--848:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00848",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00848",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "09 August 2018",
ORCID-numbers = "Vincent Arel-Bundock / 0000-0003-2042-7063; Nils
Enevoldsen / 0000-0001-7195-4117; C. J. Yetman /
0000-0001-5099-9500",
}
@Article{Handley:2018:PFP,
author = "Will Handley",
title = "\pkg{fgivenx}: A {Python} package for functional
posterior plotting",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "849:1--849:4",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00849",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00849",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 August 2018",
ORCID-numbers = "Will Handley / 0000-0002-5866-0445",
}
@Article{Murray:2018:PPP,
author = "Steven G. Murray",
title = "\pkg{powerbox}: A {Python} package for creating
structured fields with isotropic power spectra",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "850:1--850:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00850",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00850",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "20 August 2018",
ORCID-numbers = "Steven G. Murray / 0000-0003-3059-3823",
}
@Article{Morris:2018:PAA,
author = "Brett M. Morris and Trevor Dorn-Wallenstein",
title = "\pkg{aesop}: {ARC Echelle Spectroscopic Observation
Pipeline}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "854:1--854:1",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00854",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00854",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 August 2018",
ORCID-numbers = "Brett M. Morris / 0000-0003-2528-3409; Trevor
Dorn-Wallenstein / 0000-0003-3601-3180",
}
@Article{Wadhwa:2018:PTR,
author = "Raoul R. Wadhwa and Drew F. K. Williamson and Andrew
Dhawan and Jacob G. Scott",
title = "\pkg{TDAstats}: {R} pipeline for computing persistent
homology in topological data analysis",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "860:1--860:3",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00860",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00860",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 August 2018",
ORCID-numbers = "Raoul R. Wadhwa / 0000-0003-0503-9580; Drew F. K.
Williamson / 0000-0003-1745-8846; Andrew Dhawan /
0000-0002-5027-1277; Jacob G. Scott /
0000-0003-2971-7673",
}
@Article{Porter:2018:PJE,
author = "Michael T. Porter",
title = "\pkg{js-emass}: A flexible {JavaScript} implementation
of the \pkg{emass} algorithm",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "869:1--869:1",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00869",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/java2010.bib;
https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00869",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "22 August 2018",
ORCID-numbers = "Michael T. Porter / 0000-0002-1148-6603",
}
@Article{Jones:2018:PLL,
author = "Andrew T. Jones and Hien D. Nguyen and Geoffrey J.
McLachlan",
title = "\pkg{logKDE}: log-transformed kernel density
estimation",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "870:1--870:3",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00870",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00870",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "06 August 2018",
ORCID-numbers = "Hien D. Nguyen / 0000-0002-9958-432X",
}
@Article{deBuyl:2018:PTT,
author = "Pierre de Buyl",
title = "\pkg{tidynamics}: A tiny package to compute the
dynamics of stochastic and molecular simulations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "877:1--877:4",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00877",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00877",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 August 2018",
ORCID-numbers = "Pierre de Buyl / 0000-0002-6640-6463",
}
@Article{Sochat:2018:PCO,
author = "Vanessa Sochat",
title = "\pkg{Containershare}: {Open Source Registry} to build,
test, deploy with {CircleCI}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "878:1--878:3",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00878",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00878",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 August 2018",
ORCID-numbers = "Vanessa Sochat / 0000-0002-4387-3819",
}
@Article{Klebel:2018:PJI,
author = "Thomas Klebel",
title = "\pkg{jstor}: Import and Analyse Data from Scientific
Texts",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "883:1--883:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00883",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00883",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "08 August 2018",
ORCID-numbers = "Thomas Klebel / 0000-0002-7331-4751",
}
@Article{Andrews:2018:PGF,
author = "Jared M. Andrews and Mohamed El-Alawi and Jacqueline
E. Payton",
title = "\pkg{Genotify}: Fast, lightweight gene lookup and
summarization",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "885:1--885:4",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00885",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00885",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "15 August 2018",
ORCID-numbers = "Jared M. Andrews / 0000-0002-0780-6248; Mohamed
El-Alawi / 0000-0001-6506-8549; Jacqueline E. Payton /
0000-0001-8832-3661",
}
@Article{Williams:2018:CPN,
author = "Benjamin Williams",
title = "Combining a Probability and a Non-Probability Sample
in a Capture--Recapture Setting",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "886:1--886:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00886",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00886",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "14 August 2018",
ORCID-numbers = "Benjamin Williams / 0000-0001-8474-5066",
}
@Article{Nunez-Elizalde:2018:PCS,
author = "Anwar O. Nunez-Elizalde and James S. Gao and Tianjiao
Zhang and Jack L. Gallant",
title = "\pkg{cottoncandy}: scientific python package for easy
cloud storage",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "890:1--890:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00890",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00890",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "24 August 2018",
ORCID-numbers = "Anwar O. Nunez-Elizalde / 0000-0003-1346-670X",
}
@Article{Sousa:2018:PBR,
author = "David N. Sousa and Jo{\~a}o R. Daniel",
title = "\pkg{bor}: An {R} Package for Transforming Behavioral
Observation Records into Data Matrices",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "909:1--909:4",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00909",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00909",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "28 August 2018",
ORCID-numbers = "David N. Sousa / 0000-0001-7277-6447; Jo{\~a}o R.
Daniel / 0000-0001-6609-2014",
}
@Article{Dirmeier:2018:PDR,
author = "Simon Dirmeier",
title = "\pkg{datastructures}: An {R} package for organisation
and storage of data",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "28",
pages = "910:1--910:2",
month = aug,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00910",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00910",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "27 August 2018",
ORCID-numbers = "Simon Dirmeier / 0000-0001-9795-3550",
}
@Article{Roubeyrie:2018:PWP,
author = "Lionel Roubeyrie and S{\'e}bastien Celles",
title = "\pkg{Windrose}: A {Python} \pkg{Matplotlib},
\pkg{Numpy} library to manage wind and pollution data,
draw windrose",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "29",
pages = "268:1--268:5",
month = sep,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.1002/asl.680",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00268",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 September 2018",
ORCID-numbers = "Lionel Roubeyrie / 0000-0001-6017-4385; S{\'e}bastien
Celles / 0000-0001-9987-4338",
}
@Article{Fleming:2018:PAA,
author = "David P. Fleming and Jake VanderPlas",
title = "\pkg{approxposterior}: Approximate Posterior
Distributions in {Python}",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "29",
pages = "781:1--781:2",
month = sep,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00781",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00781",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 September 2018",
ORCID-numbers = "David P. Fleming / 0000-0001-9293-4043; Jake
VanderPlas / 0000-0002-9623-3401",
}
@Article{Gray:2018:PQP,
author = "Johnnie Gray",
title = "\pkg{quimb}: A python package for quantum information
and many-body calculations",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "29",
pages = "819:1--819:3",
month = sep,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00819",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00819",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "04 September 2018",
ORCID-numbers = "Johnnie Gray / 0000-0001-9461-3024",
}
@Article{Pfenninger:2018:PCM,
author = "Stefan Pfenninger and Bryn Pickering",
title = "\pkg{Calliope}: a multi-scale energy systems modelling
framework",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "29",
pages = "825:1--825:2",
month = sep,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00825",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00825",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "12 September 2018",
ORCID-numbers = "Stefan Pfenninger / 0000-0002-8420-9498; Bryn
Pickering / 0000-0003-4044-6587",
}
@Article{McInnes:2018:PUU,
author = "Leland McInnes and John Healy and Nathaniel Saul and
Lukas Gro{\ss}berger",
title = "\pkg{UMAP}: Uniform Manifold Approximation and
Projection",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "29",
pages = "861:1--861:2",
month = sep,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00861",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00861",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "02 September 2018",
ORCID-numbers = "Leland McInnes / 0000-0003-2143-6834",
}
@Article{Goyal:2018:PGP,
author = "Palash Goyal and Emilio Ferrara",
title = "\pkg{GEM}: A {Python} package for graph embedding
methods",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "29",
pages = "876:1--876:2",
month = sep,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00876",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00876",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "01 September 2018",
ORCID-numbers = "Palash Goyal / 0000-0003-2455-2160; Emilio Ferrara /
0000-0002-1942-2831",
}
@Article{Holmgren:2018:PPP,
author = "William F. Holmgren and Clifford W. Hansen and Mark A.
Mikofski",
title = "\pkg{pvlib python}: a python package for modeling
solar energy systems",
journal = j-J-OPEN-SOURCE-SOFT,
volume = "3",
number = "29",
pages = "884:1--884:3",
month = sep,
year = "2018",
CODEN = "????",
DOI = "https://doi.org/10.21105/joss.00884",
ISSN = "2475-9066",
ISSN-L = "2475-9066",
bibdate = "Thu Sep 13 08:09:35 MDT 2018",
bibsource = "https://www.math.utah.edu/pub/tex/bib/joss.bib;
https://www.math.utah.edu/pub/tex/bib/python.bib",
URL = "http://joss.theoj.org/papers/10.21105/joss.00884",
acknowledgement = ack-nhfb,
fjournal = "Journal of Open Source Software",
journal-URL = "http://joss.theoj.org/;
https://github.com/openjournals/joss-papers/",
onlinedate = "07 September 2018",
ORCID-numbers = "William F. Holmgren / 0000-0001-6218-9767; Clifford
W. Hansen / 0000-0002-8620-5378; Mark A. Mikofski /
0000-0001-8001-8582",
}
