Table of contents for issues of Annals of Applied Statistics

Last update: Sat Jan 13 09:10:41 MST 2018                Valid HTML 3.2!

Volume 1, Number 1, June, 2007
Volume 1, Number 2, December, 2007
Volume 2, Number 1, March, 2008
Volume 2, Number 2, June, 2008
Volume 2, Number 3, September, 2008
Volume 2, Number 4, December, 2008
Volume 3, Number 1, March, 2009
Volume 3, Number 2, June, 2009
Volume 3, Number 3, September, 2009
Volume 3, Number 4, December, 2009
Volume 4, Number 1, March, 2010
Volume 4, Number 2, June, 2010
Volume 4, Number 3, September, 2010
Volume 4, Number 4, December, 2010
Volume 5, Number 1, March, 2011
Volume 5, Number 2A, June, 2011
Volume 5, Number 2B, June, 2011
Volume 5, Number 3, September, 2011
Volume 5, Number 4, December, 2011
Volume 6, Number 1, March, 2012
Volume 6, Number 2, June, 2012
Volume 6, Number 3, September, 2012
Volume 6, Number 4, December, 2012
Volume 7, Number 1, March, 2013
Volume 7, Number 2, June, 2013
Volume 7, Number 3, September, 2013
Volume 7, Number 4, December, 2013
Volume 8, Number 1, March, 2014
Volume 8, Number 2, June, 2014
Volume 8, Number 3, September, 2014
Volume 8, Number 4, December, 2014
Volume 9, Number 1, March, 2015
Volume 9, Number 2, June, 2015
Volume 9, Number 3, September, 2015
Volume 9, Number 4, December, 2015
Volume 10, Number 1, March, 2016
Volume 10, Number 2, June, 2016
Volume 10, Number 3, September, 2016
Volume 10, Number 4, December, 2016
Volume 11, Number 1, March, 2017
Volume 11, Number 2, June, 2017
Volume 11, Number 3, September, 2017
Volume 11, Number 4, December, 2017


Annals of Applied Statistics
Volume 1, Number 1, June, 2007

                      D. R. Cox   Applied statistics: A review . . . . . . 1--16
              David M. Blei and   
               John D. Lafferty   A correlated topic model of
                                  \booktitleScience  . . . . . . . . . . . 17--35
                  Qing Zhou and   
                 Wing Hung Wong   Coupling hidden Markov models for the
                                  discovery of Cis-regulatory modules in
                                  multiple species . . . . . . . . . . . . 36--65
              Anita Araneda and   
        Stephen E. Fienberg and   
                    Alvaro Soto   A statistical approach to simultaneous
                                  mapping and localization for mobile
                                  robots . . . . . . . . . . . . . . . . . 66--84
          Michael A. Newton and   
       Fernando A. Quintana and   
          Johan A. den Boon and   
          Srikumar Sengupta and   
                  Paul Ahlquist   Random-set methods identify distinct
                                  aspects of the enrichment signal in
                                  gene-set analysis  . . . . . . . . . . . 85--106
              Bradley Efron and   
              Robert Tibshirani   On testing the significance of sets of
                                  genes  . . . . . . . . . . . . . . . . . 107--129
             R. Dennis Cook and   
                     Liqiang Ni   Elevated soil lead: Statistical modeling
                                  and apportionment of contributions from
                                  lead-based paint and leaded gasoline . . 130--151
               David M. Seo and   
Pascal J. Goldschmidt-Clermont and   
                      Mike West   Of mice and men: Sparse statistical
                                  modeling in cardiovascular genomics  . . 152--178
           Alexander Gordon and   
              Galina Glazko and   
                   Xing Qiu and   
                Andrei Yakovlev   Control of the mean number of false
                                  discoveries, Bonferroni and stability of
                                  multiple testing . . . . . . . . . . . . 179--190
               Michael L. Stein   Spatial variation of total column ozone
                                  on a global scale  . . . . . . . . . . . 191--210
                  Yang Yang and   
             Ira M. Longini and   
          M. Elizabeth Halloran   A resampling-based test to detect
                                  person-to-person transmission of
                                  infectious disease . . . . . . . . . . . 211--228
            Leontine Alkema and   
          Adrian E. Raftery and   
                Samuel J. Clark   Probabilistic projections of HIV
                                  prevalence using Bayesian melding  . . . 229--248
             Brian J. Reich and   
             Montserrat Fuentes   A multivariate semiparametric Bayesian
                                  spatial modeling framework for hurricane
                                  surface wind fields  . . . . . . . . . . 249--264
                  Peter D. Hoff   Extending the rank likelihood for
                                  semiparametric copula estimation . . . . 265--283

Annals of Applied Statistics
Volume 1, Number 2, December, 2007

            Stephen E. Fienberg   Editorial: Statistics and forensic
                                  science  . . . . . . . . . . . . . . . . 285--286
           Cliff Spiegelman and   
           William A. Tobin and   
           William D. James and   
          Simon J. Sheather and   
              Stuart Wexler and   
               D. Max Roundhill   Chemical and forensic analysis of JFK
                                  assassination bullet lots: Is a second
                                  shooter possible?  . . . . . . . . . . . 287--301
            Jerome Friedman and   
              Trevor Hastie and   
        Holger Höfling and   
              Robert Tibshirani   Pathwise coordinate optimization . . . . 302--332
                  Zhijin Wu and   
             Rafael A. Irizarry   A statistical framework for the analysis
                                  of microarray probe-level data . . . . . 333--357
                  Bruce S. Weir   The rarity of DNA profiles . . . . . . . 358--370
Amy Berrington de González and   
                      D. R. Cox   Interpretation of interaction: A review  371--385
                    Art B. Owen   The pigeonhole bootstrap . . . . . . . . 386--411
              Galit Shmueli and   
             Ralph P. Russo and   
                  Wolfgang Jank   The BARISTA: A model for bid arrivals in
                                  online auctions  . . . . . . . . . . . . 412--441
                  Haiyan Wu and   
                  Ming Yuan and   
             Susan M. Kaech and   
          M. Elizabeth Halloran   A statistical analysis of memory CD8 T
                                  cell differentiation: An application of
                                  a hierarchical state space model to a
                                  short time course microarray experiment  442--458
                 Marc Coram and   
                       Hua Tang   Improving population-specific allele
                                  frequency estimates by adapting
                                  supplemental data: An empirical Bayes
                                  approach . . . . . . . . . . . . . . . . 459--479
                Gareth M. James   Curve alignment by moments . . . . . . . 480--501
          Elena A. Erosheva and   
        Stephen E. Fienberg and   
                Cyrille Joutard   Describing disability through
                                  individual-level mixture models for
                                  multivariate binary data . . . . . . . . 502--537
               Lev Klebanov and   
                Andrei Yakovlev   Diverse correlation structures in gene
                                  expression data and their utility in
                                  improving statistical inference  . . . . 538--559
                Ji Meng Loh and   
                  Zhengyuan Zhu   Accounting for spatial correlation in
                                  the scan statistic . . . . . . . . . . . 560--584
           John A. D. Aston and   
            Donald E. K. Martin   Distributions associated with general
                                  runs and patterns in hidden Markov
                                  models . . . . . . . . . . . . . . . . . 585--611
            Shane T. Jensen and   
                 Guang Chen and   
    Christian J. Stoeckert, Jr.   Bayesian variable selection and data
                                  integration for biological regulatory
                                  networks . . . . . . . . . . . . . . . . 612--633
              David M. Blei and   
               John D. Lafferty   A correlated topic model of
                                  \booktitleScience  . . . . . . . . . . . 634


Annals of Applied Statistics
Volume 2, Number 1, March, 2008

            Stephen E. Fienberg   Editorial: Statistics and ``The lost
                                  tomb of Jesus''  . . . . . . . . . . . . 1--2
             Andrey Feuerverger   Statistical analysis of an archeological
                                  find . . . . . . . . . . . . . . . . . . 3--54
             Stephen M. Stigler   Discussion of: ``Statistical analysis of
                                  an archeological find''  . . . . . . . . 55--56
                    Camil Fuchs   Discussion of: ``Statistical analysis of
                                  an archeological find''  . . . . . . . . 57--65
              Donald L. Bentley   Discussion of: Statistical analysis of
                                  an archaeological find . . . . . . . . . 66--73
                 Sheila M. Bird   Discussion of: ``Statistical analysis of
                                  an archeological find'' --- skeptical
                                  counting challenges to an archaeological
                                  find . . . . . . . . . . . . . . . . . . 74--76
        Holger Höfling and   
                Larry Wasserman   Discussion of: ``Statistical analysis of
                                  an archeological find''  . . . . . . . . 77--83
            Randall Ingermanson   Discussion of: ``Statistical analysis of
                                  an archaeological find'' . . . . . . . . 84--90
                 J. Mortera and   
                      P. Vicard   Discussion of: ``Statistical analysis of
                                  an archeological find''  . . . . . . . . 91--96
               Joseph B. Kadane   Discussion of: Bayesian views of an
                                  archaeological find  . . . . . . . . . . 97--98
             Andrey Feuerverger   Rejoinder of: ``Statistical analysis of
                                  an archeological find''  . . . . . . . . 99--112
              Lawrence D. Brown   In-season prediction of batting
                                  averages: A field test of empirical
                                  Bayes and Bayes methodologies  . . . . . 113--152
          Armin Schwartzman and   
        Robert F. Dougherty and   
             Jonathan E. Taylor   False discovery rate analysis of brain
                                  diffusion direction maps . . . . . . . . 153--175
              David A. Freedman   On regression adjustments in experiments
                                  with several treatments  . . . . . . . . 176--196
                  Bradley Efron   Simultaneous inference: When should
                                  hypothesis testing problems be combined? 197--223
               Tong Tong Wu and   
                  Kenneth Lange   Coordinate descent algorithms for lasso
                                  penalized regression . . . . . . . . . . 224--244
           Elizaveta Levina and   
               Adam Rothman and   
                         Ji Zhu   Sparse estimation of large covariance
                                  matrices via a nested Lasso penalty  . . 245--263
          Charles F. Manski and   
             Francesca Molinari   Skip sequencing: A decision problem in
                                  questionnaire design . . . . . . . . . . 264--285
           William T. Barry and   
            Andrew B. Nobel and   
                 Fred A. Wright   A statistical framework for testing
                                  functional categories in microarray data 286--315
    Maarten J. L. F. Cruyff and   
        Ulf Böckenholt and   
          Ardo van den Hout and   
    Peter G. M. van der Heijden   Accounting for self-protective responses
                                  in randomized response data from a
                                  social security survey using the
                                  zero-inflated Poisson model  . . . . . . 316--331
             Nancy R. Zhang and   
         Mary C. Wildermuth and   
               Terence P. Speed   Transcription factor binding site
                                  prediction with multivariate gene
                                  expression data  . . . . . . . . . . . . 332--365
         Tathagata Banerjee and   
                 Rahul Mukerjee   Optimal factorial designs for cDNA
                                  microarray experiments . . . . . . . . . 366--385
                     Li Qin and   
           Peter B. Gilbert and   
              Dean Follmann and   
                    Dongfeng Li   Assessing surrogate endpoints in vaccine
                                  trials with case-cohort sampling and the
                                  Cox model  . . . . . . . . . . . . . . . 386--407
                    Zhi Wei and   
                     Hongzhe Li   A hidden spatial-temporal Markov random
                                  field model for network-based analysis
                                  of time course gene expression data  . . 408--429
             John E. Fiorentino   Letter to the Editor . . . . . . . . . . 430--431
        Clifford Spiegelman and   
             S. J. Sheather and   
                W. A. Tobin and   
                W. D. James and   
                  S. Wexler and   
                D. M. Roundhill   Response to the Letter to the Editor . . 432--433

Annals of Applied Statistics
Volume 2, Number 2, June, 2008

                 Ann B. Lee and   
                Boaz Nadler and   
                Larry Wasserman   Treelets --- An adaptive multi-scale
                                  basis for sparse unordered data  . . . . 435--471
                  Fionn Murtagh   Discussion of: ``Treelets --- An
                                  adaptive multi-scale basis for sparse
                                  unordered data'' . . . . . . . . . . . . 472--473
            Peter J. Bickel and   
                  Ya'acov Ritov   Discussion of: ``Treelets --- An
                                  adaptive multi-scale basis for sparse
                                  unordered data'' . . . . . . . . . . . . 474--477
        Nicolai Meinshausen and   
            Peter Bühlmann   Discussion of: ``Treelets --- An
                                  adaptive multi-scale basis for sparse
                                  unordered data'' . . . . . . . . . . . . 478--481
              Robert Tibshirani   Discussion of: ``Treelets --- An
                                  adaptive multi-scale basis for sparse
                                  unordered data'' . . . . . . . . . . . . 482--483
                       Xing Qiu   Discussion of: ``Treelets --- An
                                  adaptive multi-scale basis for sparse
                                  unordered data'' . . . . . . . . . . . . 484--488
           Catherine Tuglus and   
           Mark J. van der Laan   Discussion of: ``Treelets --- An
                                  adaptive multi-scale basis for sparse
                                  unordered data'' . . . . . . . . . . . . 489--493
                 Ann B. Lee and   
                Boaz Nadler and   
                Larry Wasserman   Rejoinder of: ``Treelets --- An adaptive
                                  multi-scale basis for spare unordered
                                  data'' . . . . . . . . . . . . . . . . . 494--500
                      S. C. Kou   Stochastic modeling in nanoscale
                                  biophysics: Subdiffusion within proteins 501--535
              Andrew Gelman and   
              Cexun Jeffrey Cai   Should the Democrats move to the left on
                                  economic policy? . . . . . . . . . . . . 536--549
                Philip B. Stark   Conservative statistical post-election
                                  audits . . . . . . . . . . . . . . . . . 550--581
                   Lu Zheng and   
                   Marvin Zelen   Multi-center clinical trials:
                                  Randomization and ancillary statistics   582--600
               Haipeng Shen and   
               Jianhua Z. Huang   Forecasting time series of inhomogeneous
                                  Poisson processes with application to
                                  call center workforce management . . . . 601--623
             T. A. Buishand and   
                 L. de Haan and   
                        C. Zhou   On spatial extremes: With application to
                                  a rainfall problem . . . . . . . . . . . 624--642
        Holger Höfling and   
              Robert Tibshirani   A study of pre-validation  . . . . . . . 643--664
                Qingzhao Yu and   
        Elizabeth A. Stasny and   
                         Bin Li   Bayesian models to adjust for response
                                  bias in survey data for estimating rape
                                  and domestic violence rates from the
                                  NCVS . . . . . . . . . . . . . . . . . . 665--686
          Robert B. Scharpf and   
        Giovanni Parmigiani and   
           Jonathan Pevsner and   
                 Ingo Ruczinski   Hidden Markov models for the assessment
                                  of chromosomal alterations using
                                  high-throughput SNP arrays . . . . . . . 687--713
           Egil Ferkingstad and   
           Arnoldo Frigessi and   
           Håvard Rue and   
        Gudmar Thorleifsson and   
                 Augustine Kong   Unsupervised empirical Bayesian multiple
                                  testing with external covariates . . . . 714--735
               Xiaoxi Zhang and   
         Timothy D. Johnson and   
      Roderick J. A. Little and   
                        Yue Cao   Quantitative magnetic resonance image
                                  analysis via the EM algorithm with
                                  stochastic variation . . . . . . . . . . 736--755
           Sergio Venturini and   
         Francesca Dominici and   
            Giovanni Parmigiani   Gamma shape mixtures for heavy-tailed
                                  distributions  . . . . . . . . . . . . . 756--776

Annals of Applied Statistics
Volume 2, Number 3, September, 2008

             Persi Diaconis and   
                Sharad Goel and   
                   Susan Holmes   Horseshoes in multidimensional scaling
                                  and local kernel methods . . . . . . . . 777--807
                Donald B. Rubin   For objective causal inference, design
                                  trumps analysis  . . . . . . . . . . . . 808--840
            Hemant Ishwaran and   
           Udaya B. Kogalur and   
       Eugene H. Blackstone and   
               Michael S. Lauer   Random survival forests  . . . . . . . . 841--860
               P. L. Davies and   
                  U. Gather and   
                   M. Meise and   
                  D. Mergel and   
                T. Mildenberger   Residual-based localization and
                                  quantification of peaks in X-ray
                                  diffractograms . . . . . . . . . . . . . 861--886
                    Louis Lyons   Open statistical issues in Particle
                                  Physics  . . . . . . . . . . . . . . . . 887--915
         Jerome H. Friedman and   
              Bogdan E. Popescu   Predictive learning via rule ensembles   916--954
          L. Fraser Jackson and   
           Alistair G. Gray and   
            Stephen E. Fienberg   Sequential category aggregation and
                                  partitioning approaches for multi-way
                                  contingency tables based on survey and
                                  census data  . . . . . . . . . . . . . . 955--981
                Philip B. Stark   A sharper discrepancy measure for
                                  post-election audits . . . . . . . . . . 982--985
          Daniela M. Witten and   
              Robert Tibshirani   Testing significance of features by
                                  lassoed principal components . . . . . . 986--1012
                  Mary C. Meyer   Inference using shape-restricted
                                  regression splines . . . . . . . . . . . 1013--1033
           Beth Ann Griffin and   
        Daniel F. McCaffrey and   
               Andrew R. Morral   An application of principal
                                  stratification to control for
                                  institutionalization at follow-up in
                                  studies of substance abuse treatment
                                  programs . . . . . . . . . . . . . . . . 1034--1055
                   Jie Peng and   
         Hans-Georg Müller   Distance-based clustering of sparsely
                                  observed stochastic processes, with
                                  applications to online auctions  . . . . 1056--1077
       Cécile Ané   Analysis of comparative data with
                                  hierarchical autocorrelation . . . . . . 1078--1102
                 Steven D. Mark   A general formulation for
                                  standardization of rates as a method to
                                  control confounding by measured and
                                  unmeasured disease risk factors  . . . . 1103--1122
               D. Commenges and   
                A. Sayyareh and   
               L. Letenneur and   
                   J. Guedj and   
                     A. Bar-Hen   Estimating a difference of
                                  Kullback--Leibler risks using a
                                  normalized difference of AIC . . . . . . 1123--1142

Annals of Applied Statistics
Volume 2, Number 4, December, 2008

         Montserrat Fuentes and   
              Peter Guttorp and   
               Michael L. Stein   Special section on statistics in the
                                  atmospheric sciences . . . . . . . . . . 1143--1147
         Montserrat Fuentes and   
                Brian Reich and   
                     Gyuwon Lee   Spatial--temporal mesoscale modeling of
                                  rainfall intensity using gage and radar
                                  data . . . . . . . . . . . . . . . . . . 1148--1169
       Veronica J. Berrocal and   
          Adrian E. Raftery and   
               Tilmann Gneiting   Probabilistic quantitative precipitation
                                  field forecasting using a two-stage
                                  spatial model  . . . . . . . . . . . . . 1170--1193
                Huiyan Sang and   
            Alan E. Gelfand and   
              Chris Lennard and   
            Gabriele Hegerl and   
                 Bruce Hewitson   Interpreting self-organizing maps
                                  through space--time data models  . . . . 1194--1216
              Dorin Drignei and   
            Chris E. Forest and   
                    Doug Nychka   Parameter estimation for computationally
                                  intensive nonlinear regression with an
                                  application to climate modeling  . . . . 1217--1230
            Anders Malmberg and   
           Avelino Arellano and   
           David P. Edwards and   
              Natasha Flyer and   
                Doug Nychka and   
              Christopher Wikle   Interpolating fields of carbon monoxide
                                  data using a hybrid statistical-physical
                                  model  . . . . . . . . . . . . . . . . . 1231--1248
             Gavin Shaddick and   
                 Duncan Lee and   
             James V. Zidek and   
                    Ruth Salway   Estimating exposure response functions
                                  using ambient pollution concentrations   1249--1270
               Mikyoung Jun and   
               Michael L. Stein   Nonstationary covariance models for
                                  global data  . . . . . . . . . . . . . . 1271--1289
                    Hui Zou and   
                     Ji Zhu and   
                  Trevor Hastie   New multicategory boosting algorithms
                                  based on multicategory Fisher-consistent
                                  losses . . . . . . . . . . . . . . . . . 1290--1306
                  Qing Zhou and   
                 Wing Hung Wong   Reconstructing the energy landscape of a
                                  distribution from Monte Carlo samples    1307--1331
              Armin Schwartzman   Empirical null and false discovery rate
                                  inference for exponential families . . . 1332--1359
              Andrew Gelman and   
              Aleks Jakulin and   
        Maria Grazia Pittau and   
                     Yu-Sung Su   A weakly informative default prior
                                  distribution for logistic and other
                                  regression models  . . . . . . . . . . . 1360--1383
              Yangxin Huang and   
                         Tao Lu   Modeling long-term longitudinal HIV
                                  dynamics with application to an AIDS
                                  clinical study . . . . . . . . . . . . . 1384--1408
                  Yang Yang and   
              Peter Gilbert and   
        Ira M. Longini, Jr. and   
          M. Elizabeth Halloran   A Bayesian framework for estimating
                                  vaccine efficacy per infectious contact  1409--1431
                     Li Qin and   
                   Yuedong Wang   Nonparametric spectral analysis with
                                  applications to seizure characterization
                                  using EEG time series  . . . . . . . . . 1432--1451
      Isobel Claire Gormley and   
          Thomas Brendan Murphy   A mixture of experts model for rank data
                                  with applications in election studies    1452--1477
             Paul Gustafson and   
           Genevi\`eve Lefebvre   Bayesian multinomial regression with
                                  class-specific predictor selection . . . 1478--1502
              Hsieh Fushing and   
                     Li Zhu and   
      David I. Shapiro-Ilan and   
          James F. Campbell and   
                 Edwin E. Lewis   State-space based mass event-history
                                  model I: Many decision-making agents
                                  with one target  . . . . . . . . . . . . 1503--1522
           Tommaso Proietti and   
               Alessandra Luati   Real time estimation in local polynomial
                                  regression, with application to
                                  trend-cycle analysis . . . . . . . . . . 1523--1553
           Claire Cannamela and   
           Josselin Garnier and   
                 Bertrand Iooss   Controlled stratification for quantile
                                  estimation . . . . . . . . . . . . . . . 1554--1580


Annals of Applied Statistics
Volume 3, Number 1, March, 2009

           Thomas J. Loredo and   
                  John Rice and   
               Michael L. Stein   Introduction to papers on
                                  astrostatistics  . . . . . . . . . . . . 1--5
               Sarah Bridle and   
               Mandeep Gill and   
               Alan Heavens and   
          Catherine Heymans and   
            F. William High and   
              Henk Hoekstra and   
                Mike Jarvis and   
              Donnacha Kirk and   
            Thomas Kitching and   
            Jean-Paul Kneib and   
             Konrad Kuijken and   
          John Shawe-Taylor and   
            David Lagatutta and   
          Rachel Mandelbaum and   
             Richard Massey and   
            Yannick Mellier and   
           Baback Moghaddam and   
             Yassir Moudden and   
             Reiko Nakajima and   
 Stephane Paulin-Henriksson and   
             Sandrine Pires and   
               Anais Rassat and   
                 Adam Amara and   
        Alexandre Refregier and   
               Jason Rhodes and   
             Tim Schrabback and   
       Elisabetta Semboloni and   
            Marina Shmakova and   
       Ludovic van Waerbeke and   
            Dugan Witherick and   
                 Lisa Voigt and   
              David Wittman and   
          Douglas Applegate and   
         Sreekumar T. Balan and   
                 Joel Berge and   
             Gary Bernstein and   
                Hakon Dahle and   
                   Thomas Erben   Handbook for the GREAT08 Challenge: An
                                  image analysis competition for
                                  cosmological lensing . . . . . . . . . . 6--37
        Nicolai Meinshausen and   
               Peter Bickel and   
                      John Rice   Efficient blind search: Optimal power of
                                  detection under computational cost
                                  constraints  . . . . . . . . . . . . . . 38--60
              Paolo Cabella and   
             Domenico Marinucci   Statistical challenges in the analysis
                                  of Cosmic Microwave Background radiation 61--95
            Bodhisattva Sen and   
         Moulinath Banerjee and   
          Michael Woodroofe and   
                Mario Mateo and   
                 Matthew Walker   Streaming motion in Leo I  . . . . . . . 96--116
           David A. van Dyk and   
           Steven DeGennaro and   
               Nathan Stein and   
        William H. Jefferys and   
                 Ted von Hippel   Statistical analysis of stellar
                                  evolution  . . . . . . . . . . . . . . . 117--143
       Christopher Genovese and   
              Peter Freeman and   
            Larry Wasserman and   
              Robert Nichol and   
             Christopher Miller   Inference for the dark energy equation
                                  of state using Type IA supernova data    144--178
             Yoav Benjamini and   
                 Yulia Gavrilov   A simple forward selection procedure
                                  based on false discovery rate control    179--198
              Murray Aitkin and   
             Charles C. Liu and   
                   Tom Chadwick   Bayesian model comparison and model
                                  averaging for small-area estimation  . . 199--221
                 Ruiyan Luo and   
                    Bret Larget   Modeling substitution and indel
                                  processes for AFLP marker evolution and
                                  phylogenetic inference . . . . . . . . . 222--248
             Philippe Huber and   
           Olivier Scaillet and   
       Maria-Pia Victoria-Feser   Assessing multivariate predictors of
                                  financial market movements: A latent
                                  factor framework for ordinal data  . . . 249--271
               Michael L. Stein   Spatial interpolation of high-frequency
                                  monitoring data  . . . . . . . . . . . . 272--291
                  Mark Culp and   
         George Michailidis and   
                  Kjell Johnson   On multi-view learning with additive
                                  models . . . . . . . . . . . . . . . . . 292--318
        Carles Bretó and   
                  Daihai He and   
          Edward L. Ionides and   
                  Aaron A. King   Time series analysis via mechanistic
                                  models . . . . . . . . . . . . . . . . . 319--348
      Snigdhansu Chatterjee and   
                     Peihua Qiu   Distribution-free cumulative sum control
                                  charts using bootstrap-based control
                                  limits . . . . . . . . . . . . . . . . . 349--369
    Christopher J. Paciorek and   
            Jeff D. Yanosky and   
             Robin C. Puett and   
             Francine Laden and   
                   Helen H. Suh   Practical large-scale spatio-temporal
                                  modeling of particulate matter
                                  concentrations . . . . . . . . . . . . . 370--397
            Abhyuday Mandal and   
              Pritam Ranjan and   
                  C. F. Jeff Wu   $ \mathcal{G}$-SELC: Optimization by
                                  sequential elimination of level
                                  combinations using genetic algorithms
                                  and Gaussian processes . . . . . . . . . 398--421
      Yacine A\"\it-Sahalia and   
                      Jialin Yu   High frequency market microstructure
                                  noise estimates and liquidity measures   422--457
               Chong-Zhi Di and   
     Ciprian M. Crainiceanu and   
             Brian S. Caffo and   
              Naresh M. Punjabi   Multilevel functional principal
                                  component analysis . . . . . . . . . . . 458--488
          Donald B. Macnaughton   Letter to the Editor . . . . . . . . . . 489

Annals of Applied Statistics
Volume 3, Number 2, June, 2009

            Shane T. Jensen and   
         Kenneth E. Shirley and   
               Abraham J. Wyner   Bayesball: A Bayesian hierarchical model
                                  for evaluating fielding in major league
                                  baseball . . . . . . . . . . . . . . . . 491--520
               Jianqing Fan and   
                  Yang Feng and   
                      Yichao Wu   Network exploration via the adaptive
                                  LASSO and SCAD penalties . . . . . . . . 521--541
             Jorge R. Busch and   
           Pablo A. Ferrari and   
        Ana Georgina Flesia and   
            Ricardo Fraiman and   
      Sebastian P. Grynberg and   
             Florencia Leonardi   Testing statistical hypothesis on random
                                  trees and applications to the protein
                                  classification problem . . . . . . . . . 542--563
                Art B. Owen and   
               Patrick O. Perry   Bi-cross-validation of the SVD and the
                                  nonnegative matrix factorization . . . . 564--594
       Dankmar Böhning and   
    Peter G. M. van der Heijden   A covariate adjustment for
                                  zero-truncated approaches to estimating
                                  the size of hidden and elusive
                                  populations  . . . . . . . . . . . . . . 595--610
       Francesco Bartolucci and   
           Monia Lupparelli and   
           Giorgio E. Montanari   Latent Markov model for longitudinal
                                  binary data: An application to the
                                  performance evaluation of nursing homes  611--636
Céline Lévy-Leduc and   
         François Roueff   Detection and localization of
                                  change-points in high-dimensional
                                  network traffic data . . . . . . . . . . 637--662
               D. Fouskakis and   
               I. Ntzoufras and   
                      D. Draper   Bayesian variable selection using
                                  cost-adjusted BIC, with application to
                                  cost-effective measurement of quality of
                                  health care  . . . . . . . . . . . . . . 663--690
              Brenda Jenney and   
                    Sharon Lohr   Experimental designs for multiple-level
                                  responses, with application to a
                                  large-scale educational intervention . . 691--709
              Xi Kathy Zhou and   
           Merlise A. Clyde and   
              James Garrett and   
          Viridiana Lourdes and   
          Michael O'Connell and   
        Giovanni Parmigiani and   
            David J. Turner and   
                      Tim Wiles   Statistical methods for automated drug
                                  susceptibility testing: Bayesian minimum
                                  inhibitory concentration prediction from
                                  growth curves  . . . . . . . . . . . . . 710--730
             Peter J. Green and   
                  Julia Mortera   Sensitivity of inferences in forensic
                                  genetics to assumptions about founding
                                  genes  . . . . . . . . . . . . . . . . . 731--763
           Paul T. Edlefsen and   
               Chuanhai Liu and   
             Arthur P. Dempster   Estimating limits from Poisson counting
                                  data using Dempster--Shafer analysis . . 764--790
              Kyung-Ah Sohn and   
                   Eric P. Xing   A hierarchical Dirichlet process mixture
                                  model for haplotype reconstruction from
                                  multi-population data  . . . . . . . . . 791--821
         Ryan J. Tibshirani and   
              Robert Tibshirani   A bias correction for the minimum error
                                  rate in cross-validation . . . . . . . . 822--829
    Brisa N. Sánchez and   
Esben Budtz-Jòrgensen and   
                 Louise M. Ryan   An estimating equations approach to
                                  fitting latent exposure models with
                                  longitudinal health outcomes . . . . . . 830--856
                  Yili Hong and   
          William Q. Meeker and   
              James D. McCalley   Prediction of remaining life of power
                                  transformers based on left truncated and
                                  right censored lifetime data . . . . . . 857--879

Annals of Applied Statistics
Volume 3, Number 3, September, 2009

             Dylan S. Small and   
              Paul R. Rosenbaum   Error-free milestones in error prone
                                  measurements . . . . . . . . . . . . . . 881--901
                 E. Anderes and   
                      B. Yu and   
               V. Jovanovic and   
                 C. Moroney and   
                   M. Garay and   
               A. Braverman and   
                   E. Clothiaux   Maximum likelihood estimation of cloud
                                  height from multi-angle satellite
                                  imagery  . . . . . . . . . . . . . . . . 902--921
                  Bradley Efron   Are a set of microarrays independent of
                                  each other?  . . . . . . . . . . . . . . 922--942
              Shengde Liang and   
          Bradley P. Carlin and   
                Alan E. Gelfand   Analysis of Minnesota colon and rectum
                                  cancer point patterns with spatial and
                                  nonspatial covariate information . . . . 943--962
                      Ming Yuan   State price density estimation via
                                  nonparametric mixtures . . . . . . . . . 963--984
         Andrey A. Shabalin and   
          Victor J. Weigman and   
           Charles M. Perou and   
                Andrew B. Nobel   Finding large average submatrices in
                                  high dimensional data  . . . . . . . . . 985--1012
                 Peihua Qiu and   
                  Rong Yang and   
                Michael Potegal   Statistical modeling of the time course
                                  of tantrum anger . . . . . . . . . . . . 1013--1034
                  David Rossell   GaGa: A parsimonious and flexible model
                                  for differential expression analysis . . 1035--1051
           Andrew O. Finley and   
           Sudipto Banerjee and   
            Ronald E. McRoberts   Hierarchical spatial models for
                                  predicting tree species assemblages
                                  across large domains . . . . . . . . . . 1052--1079
            Shane T. Jensen and   
              Ibrahim Erkan and   
        Erna S. Arnardottir and   
                 Dylan S. Small   Bayesian testing of many hypotheses $
                                  \times $ many genes: A study of sleep
                                  apnea  . . . . . . . . . . . . . . . . . 1080--1101
              Ian L. Dryden and   
          Alexey Koloydenko and   
                     Diwei Zhou   Non-Euclidean statistics for covariance
                                  matrices, with applications to diffusion
                                  tensor imaging . . . . . . . . . . . . . 1102--1123
                Sungduk Kim and   
                 Yingmei Xi and   
                  Ming-Hui Chen   A new latent cure rate marker model for
                                  survival data  . . . . . . . . . . . . . 1124--1146
          Erkan Ozge Buzbas and   
                     Paul Joyce   Maximum likelihood estimates under
                                  $k$-allele models with selection can be
                                  numerically unstable . . . . . . . . . . 1147--1162
             Elizabeth R. Brown   Assessing the association between trends
                                  in a biomarker and risk of event with an
                                  application in pediatric HIV/AIDS  . . . 1163--1182
            W. Evan Johnson and   
             X. Shirley Liu and   
                     Jun S. Liu   Doubly stochastic continuous-time hidden
                                  Markov approach for analyzing genome
                                  tiling arrays  . . . . . . . . . . . . . 1183--1203
              Asger Hobolth and   
                  Eric A. Stone   Simulation from endpoint-conditioned,
                                  continuous-time Markov chains on a
                                  finite state space, with applications to
                                  molecular evolution  . . . . . . . . . . 1204--1231

Annals of Applied Statistics
Volume 3, Number 4, December, 2009

              Michael A. Newton   Introducing the discussion paper by
                                  Székely and Rizzo . . . . . . . . . . . . 1233--1235
Gábor J. Székely and   
                 Maria L. Rizzo   Brownian distance covariance . . . . . . 1236--1265
            Peter J. Bickel and   
                        Ying Xu   Discussion of: Brownian distance
                                  covariance . . . . . . . . . . . . . . . 1266--1269
             Michael R. Kosorok   Discussion of: Brownian distance
                                  covariance . . . . . . . . . . . . . . . 1270--1278
                    Leslie Cope   Discussion of: Brownian distance
                                  covariance . . . . . . . . . . . . . . . 1279--1281
             Andrey Feuerverger   Discussion of: Brownian distance
                                  covariance . . . . . . . . . . . . . . . 1282--1284
             Arthur Gretton and   
             Kenji Fukumizu and   
       Bharath K. Sriperumbudur   Discussion of: Brownian distance
                                  covariance . . . . . . . . . . . . . . . 1285--1294
         Bruno Rémillard   Discussion of: Brownian distance
                                  covariance . . . . . . . . . . . . . . . 1295--1298
        Christopher R. Genovese   Discussion of: Brownian distance
                                  covariance . . . . . . . . . . . . . . . 1299--1302
Gábor J. Székely and   
                 Maria L. Rizzo   Rejoinder: Brownian distance covariance  1303--1308
          Keith A. Baggerly and   
               Kevin R. Coombes   Deriving chemosensitivity from cell
                                  lines: Forensic bioinformatics and
                                  reproducible research in high-throughput
                                  biology  . . . . . . . . . . . . . . . . 1309--1334
            Herman Chernoff and   
                Shaw-Hwa Lo and   
                     Tian Zheng   Discovering influential variables: A
                                  method of partitions . . . . . . . . . . 1335--1369
              Edward Mulrow and   
             Hee-Choon Shin and   
                 Fritz Scheuren   Assessing uncertainty in the American
                                  Indian Trust Fund  . . . . . . . . . . . 1370--1381
              Yingchun Zhou and   
                  Nell Sedransk   Functional data analytic approach of
                                  modeling ECG T-wave shape to measure
                                  cardiovascular behavior  . . . . . . . . 1382--1402
         Sivan Aldor-Noiman and   
             Paul D. Feigin and   
             Avishai Mandelbaum   Workload forecasting for a call center:
                                  Methodology and a case study . . . . . . 1403--1447
              Sarat C. Dass and   
                     Mingfei Li   Hierarchical mixture models for
                                  assessing fingerprint individuality  . . 1448--1466
          Josue G. Martinez and   
           Jianhua Z. Huang and   
        Robert C. Burghardt and   
              Rola Barhoumi and   
             Raymond J. Carroll   Use of multiple singular value
                                  decompositions to analyze complex
                                  intracellular calcium ion signals  . . . 1467--1492
                 Tucker McElroy   Incompatibility of trends in multi-year
                                  estimates from the American Community
                                  Survey . . . . . . . . . . . . . . . . . 1493--1504
          Jan van den Broek and   
               Hiroshi Nishiura   Using epidemic prevalence data to
                                  jointly estimate reproduction and
                                  removal  . . . . . . . . . . . . . . . . 1505--1520
           David A. Orlando and   
      Edwin S. Iversen, Jr. and   
     Alexander J. Hartemink and   
                Steven B. Haase   A branching process model for flow
                                  cytometry and budding index measurements
                                  in cell synchrony experiments  . . . . . 1521--1541
               Li-Chu Chien and   
               I-Shou Chang and   
           Shih Sheng Jiang and   
            Pramod K. Gupta and   
              Chi-Chung Wen and   
                Yuh-Jenn Wu and   
                 Chao A. Hsiung   Profiling time course expression of
                                  virus genes --- an illustration of
                                  Bayesian inference under shape
                                  restrictions . . . . . . . . . . . . . . 1542--1565
               Michiel Debruyne   An outlier map for Support Vector
                                  Machine classification . . . . . . . . . 1566--1580
          Nozer D. Singpurwalla   The utility of reliability and survival  1581--1596
         Burcu Aydìn and   
        Gábor Pataki and   
                Haonan Wang and   
          Elizabeth Bullitt and   
                   J. S. Marron   A principal component analysis for trees 1597--1615
              Iain M. Johnstone   Approximate null distribution of the
                                  largest root in multivariate analysis    1616--1633
              Xingdong Feng and   
                      Xuming He   Inference on low-rank data matrices with
                                  applications to microarray data  . . . . 1634--1654
                 James G. Scott   Nonparametric Bayesian multiple testing
                                  for longitudinal performance
                                  stratification . . . . . . . . . . . . . 1655--1674
                Daniel Merl and   
         Julia Ling-Yu Chen and   
               Jen-Tsan Chi and   
                      Mike West   An integrative analysis of cancer gene
                                  expression studies using Bayesian latent
                                  factor modeling  . . . . . . . . . . . . 1675--1694
                 Youyi Fong and   
              Peter Guttorp and   
                 Janis Abkowitz   Bayesian inference and model choice in a
                                  hidden stochastic two-compartment model
                                  of hematopoietic stem cell fate
                                  decisions  . . . . . . . . . . . . . . . 1695--1709
                    Wei-Yin Loh   Improving the precision of
                                  classification trees . . . . . . . . . . 1710--1737
                  Ming Yuan and   
           V. Roshan Joseph and   
                        Hui Zou   Structured variable selection and
                                  estimation . . . . . . . . . . . . . . . 1738--1757
                 Daniel Gervini   Detecting and handling outlying
                                  trajectories in irregularly sampled
                                  functional datasets  . . . . . . . . . . 1758--1775
                Fabio Rigat and   
                   Jim Q. Smith   Semi-parametric dynamic time series
                                  modelling with applications to detecting
                                  neural dynamics  . . . . . . . . . . . . 1776--1804
                Yufen Zhang and   
            James S. Hodges and   
               Sudipto Banerjee   Smoothed ANOVA with spatial effects as a
                                  competitor to MCAR in multivariate
                                  spatial smoothing  . . . . . . . . . . . 1805--1830


Annals of Applied Statistics
Volume 4, Number 1, March, 2010

            Stephen E. Fienberg   Introduction to papers on the modeling
                                  and analysis of network data . . . . . . 1--4
           Mark S. Handcock and   
                 Krista J. Gile   Modeling social networks from sampled
                                  data . . . . . . . . . . . . . . . . . . 5--25
              Cheolwoo Park and   
Felix Hernández-Campos and   
               J. S. Marron and   
               Kevin Jeffay and   
              F. Donelson Smith   Analysis of dependence among size, rate
                                  and duration in Internet flows . . . . . 26--52
                   Jie Peng and   
                     Ji Zhu and   
           Anna Bergamaschi and   
                Wonshik Han and   
             Dong-Young Noh and   
        Jonathan R. Pollack and   
                       Pei Wang   Regularized multivariate regression for
                                  identifying master predictors with
                                  application to integrative genomics
                                  study of breast cancer . . . . . . . . . 53--77
              Harsh Singhal and   
             George Michailidis   Optimal experiment design in a filtering
                                  context with application to sampled
                                  network data . . . . . . . . . . . . . . 78--93
               Mladen Kolar and   
                    Le Song and   
                  Amr Ahmed and   
                   Eric P. Xing   Estimating time-varying networks . . . . 94--123
             Jonathan Chang and   
                  David M. Blei   Hierarchical relational models for
                                  document networks  . . . . . . . . . . . 124--150
              Wolfgang Jank and   
                    Inbal Yahav   E-loyalty networks in online auctions    151--178
                 Ann B. Lee and   
                 Diana Luca and   
                 Kathryn Roeder   A spectral graph approach to discovering
                                  genetic ancestry . . . . . . . . . . . . 179--202
  Mária Süveges and   
             Anthony C. Davison   Model misspecification in peaks over
                                  threshold analysis . . . . . . . . . . . 203--221
    Bhojnarine R. Rambharat and   
           Anthony E. Brockwell   Sequential Monte Carlo pricing of
                                  American-style options under stochastic
                                  volatility models  . . . . . . . . . . . 222--265
            Hugh A. Chipman and   
           Edward I. George and   
            Robert E. McCulloch   BART: Bayesian additive regression trees 266--298
                    QiQi Lu and   
                Robert Lund and   
               Thomas C. M. Lee   An MDL approach to the climate
                                  segmentation problem . . . . . . . . . . 299--319
         Elias Chaibub Neto and   
             Mark P. Keller and   
              Alan D. Attie and   
               Brian S. Yandell   Causal graphical models in systems
                                  genetics: A unified framework for joint
                                  inference of causal network and genetic
                                  architecture for correlated phenotypes   320--339
             Tian Siva Tian and   
            Gareth M. James and   
                 Rand R. Wilcox   A multivariate adaptive stochastic
                                  search method for dimensionality
                                  reduction in classification  . . . . . . 340--365
         Kenneth E. Shirley and   
             Dylan S. Small and   
             Kevin G. Lynch and   
          Stephen A. Maisto and   
                 David W. Oslin   Hidden Markov models for alcoholism
                                  treatment trial data . . . . . . . . . . 366--395
      Thomas Brendan Murphy and   
                  Nema Dean and   
              Adrian E. Raftery   Variable selection and updating in
                                  model-based discriminant analysis for
                                  high dimensional data with food
                                  authenticity applications  . . . . . . . 396--421
             Omkar Muralidharan   An empirical Bayes mixture method for
                                  effect size and false discovery rate
                                  estimation . . . . . . . . . . . . . . . 422--438
             Brian J. Reich and   
         Dipankar Bandyopadhyay   A latent factor model for spatial data
                                  with informative missingness . . . . . . 439--459
                  Hua Liang and   
                Hongyu Miao and   
                       Hulin Wu   Estimation of constant and time-varying
                                  dynamic parameters of HIV infection in a
                                  nonlinear differential equation model    460--483
Elizabeth C. Mannshardt-Shamseldin and   
           Richard L. Smith and   
            Stephan R. Sain and   
            Linda O. Mearns and   
                  Daniel Cooley   Downscaling extremes: A comparison of
                                  extreme value distributions in
                                  point-source and gridded precipitation
                                  data . . . . . . . . . . . . . . . . . . 484--502
       Miika Ahdesmäki and   
             Korbinian Strimmer   Feature selection in omics prediction
                                  problems using cat scores and false
                                  nondiscovery rate control  . . . . . . . 503--519
                   Rui Wang and   
                    Lu Tian and   
                 Tianxi Cai and   
                      L. J. Wei   Nonparametric inference procedure for
                                  percentiles of the random effects
                                  distribution in meta-analysis  . . . . . 520--532

Annals of Applied Statistics
Volume 4, Number 2, June, 2010

            Stephen E. Fienberg   Introduction to papers on the modeling
                                  and analysis of network data --- II  . . 533--534
               Eric P. Xing and   
                  Wenjie Fu and   
                        Le Song   A state-space mixed membership
                                  blockmodel for dynamic network
                                  tomography . . . . . . . . . . . . . . . 535--566
         Tom A. B. Snijders and   
             Johan Koskinen and   
          Michael Schweinberger   Maximum likelihood estimation for social
                                  network dynamics . . . . . . . . . . . . 567--588
                      Ya Xu and   
             Justin S. Dyer and   
                    Art B. Owen   Empirical stationary correlations for
                                  semi-supervised learning on graphs . . . 589--614
              Ricardo Silva and   
           Katherine Heller and   
          Zoubin Ghahramani and   
             Edoardo M. Airoldi   Ranking relations using analogies in
                                  biological and information networks  . . 615--644
          Nicholas A. Heard and   
            David J. Weston and   
         Kiriaki Platanioti and   
                  David J. Hand   Bayesian anomaly detection methods for
                                  social networks  . . . . . . . . . . . . 645--662
            Gareth M. James and   
             Chiara Sabatti and   
              Nengfeng Zhou and   
                         Ji Zhu   Sparse regulatory networks . . . . . . . 663--686
                Hugo Zanghi and   
              Franck Picard and   
              Vincent Miele and   
            Christophe Ambroise   Strategies for online inference of
                                  model-based clustering in large and
                                  growing networks . . . . . . . . . . . . 687--714
       Mahendra Mariadassou and   
      Stéphane Robin and   
                 Corinne Vacher   Uncovering latent structure in valued
                                  graphs: A variational approach . . . . . 715--742
                 Anat Sakov and   
                Ilan Golani and   
               Dina Lipkind and   
                 Yoav Benjamini   High-throughput data analysis in
                                  behavior genetics  . . . . . . . . . . . 743--763
          Genevera I. Allen and   
              Robert Tibshirani   Transposable regularized covariance
                                  models with an application to missing
                                  data imputation  . . . . . . . . . . . . 764--790
           Michael R. Huber and   
           Rodney X. Sturdivant   Building a model for scoring 20 or more
                                  runs in a baseball game  . . . . . . . . 791--804
     Dipankar Bandyopadhyay and   
            Debajyoti Sinha and   
             Stuart Lipsitz and   
           Elizabeth Letourneau   Changing approaches of prosecutors
                                  towards juvenile repeated sex-offenders:
                                  A Bayesian evaluation  . . . . . . . . . 805--829
                John Hughes and   
                John Fricks and   
                William Hancock   Likelihood inference for particle
                                  location in fluorescence microscopy  . . 830--848
           Carrie A. Hosman and   
              Ben B. Hansen and   
                Paul W. Holland   The sensitivity of linear regression
                                  coefficients' confidence limits to the
                                  omission of a confounder . . . . . . . . 849--870
           Audrey Qiuyan Fu and   
          Diane P. Genereux and   
       Reinhard Stöger and   
           Charles D. Laird and   
               Matthew Stephens   Statistical inference of transmission
                                  fidelity of DNA methylation patterns
                                  over somatic cell divisions in mammals   871--892
              Woncheol Jang and   
                    Ji Meng Loh   Density estimation for grouped data with
                                  application to line transect sampling    893--915
          Kristin P. Lennox and   
              David B. Dahl and   
            Marina Vannucci and   
                   Ryan Day and   
                  Jerry W. Tsai   A Dirichlet process mixture of hidden
                                  Markov models for protein structure
                                  prediction . . . . . . . . . . . . . . . 916--942
        Kimberly F. Sellers and   
                  Galit Shmueli   A flexible regression model for count
                                  data . . . . . . . . . . . . . . . . . . 943--961
                  Qunhua Li and   
         Michael J. MacCoss and   
               Matthew Stephens   A nested mixture model for protein
                                  identification using mass spectrometry   962--987
                Xiaodan Fan and   
           Saumyadipta Pyne and   
                     Jun S. Liu   Bayesian meta-analysis for identifying
                                  periodically expressed genes in fission
                                  yeast cell cycle . . . . . . . . . . . . 988--1013
                    Wei Sun and   
                 Fred A. Wright   A geometric interpretation of the
                                  permutation $p$-value and its
                                  application in eQTL studies  . . . . . . 1014--1033
             Maria L. Rizzo and   
 Gábor J. Székely   DISCO analysis: A nonparametric
                                  extension of analysis of variance  . . . 1034--1055
             Martin Slawski and   
        Wolfgang zu Castell and   
                   Gerhard Tutz   Feature selection guided by structural
                                  information  . . . . . . . . . . . . . . 1056--1080
     Stergios B. Fotopoulos and   
       Venkata K. Jandhyala and   
                Elena Khapalova   Exact asymptotic distribution of
                                  change-point mle for change in the mean
                                  of Gaussian sequences  . . . . . . . . . 1081--1104
         Jan van den Brakel and   
                    Joeri Roels   Intervention analysis with state-space
                                  models to estimate discontinuities due
                                  to a survey redesign . . . . . . . . . . 1105--1138

Annals of Applied Statistics
Volume 4, Number 3, September, 2010

           George Woodworth and   
                  Joseph Kadane   Age- and time-varying proportional
                                  hazards models for employment
                                  discrimination . . . . . . . . . . . . . 1139--1157
               Xiaoquan Wen and   
               Matthew Stephens   Using linear predictors to impute allele
                                  frequencies from summary or pooled
                                  genotype data  . . . . . . . . . . . . . 1158--1182
                 Yiping Dou and   
                  Nhu D. Le and   
                 James V. Zidek   Modeling hourly ozone concentration
                                  fields . . . . . . . . . . . . . . . . . 1183--1213
                 Gengxin Li and   
                     Yuehua Cui   A general statistical framework for
                                  dissecting parent-of-origin effects
                                  underlying endosperm traits in flowering
                                  plants . . . . . . . . . . . . . . . . . 1214--1233
             Brian Kriegler and   
                   Richard Berk   Small area estimation of the homeless in
                                  Los Angeles: An application of
                                  cost-sensitive stochastic gradient
                                  boosting . . . . . . . . . . . . . . . . 1234--1255
        Siddhartha R. Dalal and   
                       Bing Han   Detection of radioactive material
                                  entering national ports: A Bayesian
                                  approach to radiation portal data  . . . 1256--1271
            James M. Kilner and   
                Karl J. Friston   Topological inference for EEG and MEG    1272--1290
             Natalie Shlomo and   
                  Chris Skinner   Assessing the protection provided by
                                  misclassification-based disclosure
                                  limitation methods for survey microdata  1291--1310
                    Ada Lau and   
               Patrick McSharry   Approaches for multi-step density
                                  forecasts with application to aggregated
                                  wind power . . . . . . . . . . . . . . . 1311--1341
          Melanie A. Wilson and   
           Edwin S. Iversen and   
           Merlise A. Clyde and   
         Scott C. Schmidler and   
         Joellen M. Schildkraut   Bayesian model search and multilevel
                                  inference for SNP association studies    1342--1364
     Kingshuk Roy Choudhury and   
               Limian Zheng and   
               John J. Mackrill   Analysis of spatial distribution of
                                  marker expression in cells using
                                  boundary distance plots  . . . . . . . . 1365--1382
            David I. Warton and   
               Leah C. Shepherd   Poisson point process models solve the
                                  ``pseudo-absence problem'' for
                                  presence-only data in ecology  . . . . . 1383--1402
        Avishek Chakraborty and   
            Alan E. Gelfand and   
             Adam M. Wilson and   
          Andrew M. Latimer and   
          John A. Silander, Jr.   Modeling large scale species abundance
                                  with latent spatial processes  . . . . . 1403--1429
               Holger Dette and   
          Andrey Pepelyshev and   
               Tim Holland-Letz   Optimal designs for random effect models
                                  with correlated errors with applications
                                  in population pharmacokinetics . . . . . 1430--1450
                 Yijie Zhou and   
         Francesca Dominici and   
                Thomas A. Louis   A smoothing approach for masking spatial
                                  data . . . . . . . . . . . . . . . . . . 1451--1475
          Andrea S. Foulkes and   
               Livio Azzoni and   
                Xiaohong Li and   
        Margaret A. Johnson and   
              Colette Smith and   
              Karam Mounzer and   
               Luis J. Montaner   Prediction-based classification for
                                  longitudinal biomarkers  . . . . . . . . 1476--1497
                  Caiyan Li and   
                     Hongzhe Li   Variable selection and regression
                                  analysis for graph-structured covariates
                                  with an application to genomics  . . . . 1498--1516
             Paul S. Albert and   
                 Joanna H. Shih   An approach for jointly modeling
                                  multivariate longitudinal measurements
                                  and discrete time-to-event data  . . . . 1517--1532
          Pepa Ramirez-Cobo and   
              Rosa E. Lillo and   
               Simon Wilson and   
               Michael P. Wiper   Bayesian inference for double Pareto
                                  lognormal queues . . . . . . . . . . . . 1533--1557
            J. L. Wadsworth and   
                 J. A. Tawn and   
                    P. Jonathan   Accounting for choice of measurement
                                  scale in extreme value modeling  . . . . 1558--1578
                 Seokho Lee and   
           Jianhua Z. Huang and   
                     Jianhua Hu   Sparse logistic principal components
                                  analysis for binary data . . . . . . . . 1579--1601
       Kwun Chuen Gary Chan and   
                 Mei-Cheng Wang   Backward estimation of stochastic
                                  processes with failure events as time
                                  origins  . . . . . . . . . . . . . . . . 1602--1620

Annals of Applied Statistics
Volume 4, Number 4, December, 2010

                   Adele Cutler   Remembering Leo Breiman  . . . . . . . . 1621--1633
                Peter J. Bickel   Leo Breiman: An important intellectual
                                  and personal force in statistics, my
                                  life and that of many others . . . . . . 1634--1637
            Peter Bühlmann   Remembrance of Leo Breiman . . . . . . . 1638--1641
              Michael I. Jordan   Leo Breiman  . . . . . . . . . . . . . . 1642--1643
              Richard A. Olshen   Remembering Leo Breiman  . . . . . . . . 1644--1648
             Jerome H. Friedman   Remembering Leo  . . . . . . . . . . . . 1649--1651
               Charles J. Stone   Selected recollections of my
                                  relationship with Leo Breiman  . . . . . 1652--1655
                  Jacob Feldman   Leo and me . . . . . . . . . . . . . . . 1656
                         Bin Yu   Remembering Leo  . . . . . . . . . . . . 1657--1659
            Peter J. Bickel and   
               Nathan Boley and   
             James B. Brown and   
               Haiyan Huang and   
                 Nancy R. Zhang   Subsampling methods for genomic
                                  inference  . . . . . . . . . . . . . . . 1660--1697
               Tong Tong Wu and   
                  Kenneth Lange   Multicategory vertex discriminant
                                  analysis for high-dimensional data . . . 1698--1721
            Jennifer A. Tom and   
        Janet S. Sinsheimer and   
                Marc A. Suchard   Reuse, recycle, reweigh: Combating
                                  influenza through efficient sequential
                                  Bayesian computation for massive data    1722--1748
            Zhongyang Zhang and   
              Kenneth Lange and   
                Roel Ophoff and   
                 Chiara Sabatti   Reconstructing DNA copy number by
                                  penalized estimation and imputation  . . 1749--1773
           D. James Greiner and   
                 Kevin M. Quinn   Exit polling and racial bloc voting:
                                  Combining individual-level and R $
                                  \times $ C ecological data . . . . . . . 1774--1796
      Yuliya V. Karpievitch and   
        Ashoka D. Polpitiya and   
         Gordon A. Anderson and   
           Richard D. Smith and   
                 Alan R. Dabney   Liquid chromatography mass
                                  spectrometry-based proteomics:
                                  Biological and technological aspects . . 1797--1823
Dominique-Laurent Couturier and   
       Maria-Pia Victoria-Feser   Zero-inflated truncated generalized
                                  Pareto distribution for the analysis of
                                  radio audience data  . . . . . . . . . . 1824--1846
               J. Drylewicz and   
                   J. Guedj and   
               D. Commenges and   
             R. Thiébaut   Modeling the dynamics of biomarkers
                                  during primary HIV infection taking into
                                  account the uncertainty of infection
                                  date . . . . . . . . . . . . . . . . . . 1847--1870
           Nicolai Bissantz and   
              Hajo Holzmann and   
               Miros\law Pawlak   Improving PSF calibration in confocal
                                  microscopic imaging --- estimating and
                                  exploiting bilateral symmetry  . . . . . 1871--1891
            Mohammed Haddou and   
          Louis-Paul Rivest and   
           Michael Pierrynowski   A nonlinear mixed effects directional
                                  model for the estimation of the rotation
                                  axes of the human ankle  . . . . . . . . 1892--1912
             Tingting Zhang and   
                      S. C. Kou   Nonparametric inference of doubly
                                  stochastic Poisson process data via the
                                  kernel method  . . . . . . . . . . . . . 1913--1941
       Veronica J. Berrocal and   
            Alan E. Gelfand and   
               David M. Holland   A bivariate space--time downscaler under
                                  space and time misalignment  . . . . . . 1942--1975
                  Samiran Ghosh   An imputation-based approach for
                                  parameter estimation in the presence of
                                  ambiguous censoring with application in
                                  industrial supply chain  . . . . . . . . 1976--1999
                   Xia Wang and   
                   Dipak K. Dey   Generalized extreme value regression for
                                  binary response data: An application to
                                  B2B electronic payments system adoption  2000--2023
        Francesco C. Stingo and   
               Yian A. Chen and   
            Marina Vannucci and   
           Marianne Barrier and   
               Philip E. Mirkes   A Bayesian graphical modeling approach
                                  to microRNA regulatory network inference 2024--2048
            Nicolai Meinshausen   Node harvest . . . . . . . . . . . . . . 2049--2072
       Luciano I. de Castro and   
               Harry J. Paarsch   Testing affiliation in private-values
                                  models of first-price auctions using
                                  grid distributions . . . . . . . . . . . 2073--2098
             Adam A. Szpiro and   
            Kenneth M. Rice and   
                  Thomas Lumley   Model-robust regression and a Bayesian
                                  ``sandwich'' estimator . . . . . . . . . 2099--2113
                  Xuming He and   
                 Ya-Hui Hsu and   
                     Mingxiu Hu   Detection of treatment effects by
                                  covariate-adjusted expected shortfall    2114--2125
             Alejandro Jara and   
          Emmanuel Lesaffre and   
             Maria De Iorio and   
              Fernando Quintana   Bayesian semiparametric inference for
                                  multivariate doubly-interval-censored
                                  data . . . . . . . . . . . . . . . . . . 2126--2149
              Jan Gertheiss and   
                   Gerhard Tutz   Sparse modeling of categorial
                                  explanatory variables  . . . . . . . . . 2150--2180
              Brian Francis and   
            Regina Dittrich and   
             Reinhold Hatzinger   Modeling heterogeneity in ranked
                                  responses by nonparametric maximum
                                  likelihood: How do Europeans get their
                                  scientific knowledge?  . . . . . . . . . 2181--2202
            David I. Warton and   
               Leah C. Shepherd   Correction note: Poisson point process
                                  models solve the ``pseudo-absence
                                  problem'' for presence-only data in
                                  ecology  . . . . . . . . . . . . . . . . 2203--2204
                    Ada Lau and   
               Patrick McSharry   Correction note: ``Approaches for
                                  multi-step density forecasts with
                                  application to aggregated wind power''   2205
             Jerry Friedman and   
                         Bin Yu   Leo Breiman (1929--2005) . . . . . . . . ??


Annals of Applied Statistics
Volume 5, Number 1, March, 2011

               Michael L. Stein   Editorial  . . . . . . . . . . . . . . . 1--4
        Blakeley B. McShane and   
               Abraham J. Wyner   A statistical analysis of multiple
                                  temperature proxies: Are reconstructions
                                  of surface temperatures over the last
                                  1000 years reliable? . . . . . . . . . . 5--44
               L. Mark Berliner   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 45--46
                  Alexey Kaplan   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 47--51
           Richard A. Davis and   
                   Jingchen Liu   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 52--55
           Stephen McIntyre and   
                 Ross McKitrick   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 56--60
               Murali Haran and   
                Nathan M. Urban   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 61--64
           Gavin A. Schmidt and   
            Michael E. Mann and   
            Scott D. Rutherford   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 65--70
           Lasse Holmström   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 71--75
               Jason E. Smerdon   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 76--79
                Doug Nychka and   
                          Bo Li   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 80--82
              Martin P. Tingley   Spurious predictions with random time
                                  series: The Lasso in the context of
                                  paleoclimatic reconstructions.
                                  Discussion of: A statistical analysis of
                                  multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable? . . . 83--87
            Peter Craigmile and   
                Bala Rajaratnam   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 88--90
             Eugene R. Wahl and   
               Caspar M. Ammann   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 91--95
               Jonathan Rougier   Discussion of: ``A statistical analysis
                                  of multiple temperature proxies: Are
                                  reconstructions of surface temperatures
                                  over the last 1000 years reliable?'' . . 96--98
        Blakeley B. McShane and   
               Abraham J. Wyner   Rejoinder  . . . . . . . . . . . . . . . 99--123
        Chaitra H. Nagaraja and   
          Lawrence D. Brown and   
                  Linda H. Zhao   An autoregressive approach to house
                                  price modeling . . . . . . . . . . . . . 124--149
            Stephan R. Sain and   
            Reinhard Furrer and   
                   Noel Cressie   A spatial analysis of multivariate
                                  output from regional climate models  . . 150--175
                 Mengxin Li and   
                   Wei-Liem Loh   Estimating the number of neurons in
                                  multi-neuronal spike trains  . . . . . . 176--200
                  Lizhen Xu and   
              Radu V. Craiu and   
                        Lei Sun   Bayesian methods to overcome the
                                  winner's curse in genetic studies  . . . 201--231
            Patrick Breheny and   
                     Jian Huang   Coordinate descent algorithms for
                                  nonconvex penalized regression, with
                                  applications to biological feature
                                  selection  . . . . . . . . . . . . . . . 232--253
             Charles Sutton and   
              Michael I. Jordan   Bayesian inference for queueing networks
                                  and modeling of Internet services  . . . 254--282
       Jeffrey S. Rosenthal and   
                 Albert H. Yoon   Detecting multiple authorship of United
                                  States Supreme Court legal decisions
                                  using function words . . . . . . . . . . 283--308
            Pierre Latouche and   
     Etienne Birmelé and   
            Christophe Ambroise   Overlapping stochastic block models with
                                  application to the French political
                                  blogosphere  . . . . . . . . . . . . . . 309--336
             Jeff Goldsmith and   
                Brian Caffo and   
        Ciprian Crainiceanu and   
               Daniel Reich and   
                    Yong Du and   
                  Craig Hendrix   Nonlinear tube-fitting for the analysis
                                  of anatomical and functional structures  337--363
           Jonathan Gelfond and   
           Lee Ann Zarzabal and   
               Tarea Burton and   
              Suzanne Burns and   
               Mari Sogayar and   
             Luiz O. F. Penalva   Latent rank change detection for
                                  analysis of splice-junction microarrays
                                  with nonlinear effects . . . . . . . . . 364--380
    Christopher P. Saunders and   
             Linda J. Davis and   
            Andrea C. Lamas and   
             John J. Miller and   
                Donald T. Gantz   Construction and evaluation of
                                  classifiers for forensic document
                                  analysis . . . . . . . . . . . . . . . . 381--399
                      Li Su and   
                Joseph W. Hogan   HIV dynamics and natural history
                                  studies: Joint modeling with doubly
                                  interval-censored event time and
                                  infrequent longitudinal data . . . . . . 400--426
            Peter Radchenko and   
                Gareth M. James   Improved variable selection with
                                  Forward-Lasso adaptive shrinkage . . . . 427--448
             Michael Parzen and   
             Souparno Ghosh and   
             Stuart Lipsitz and   
            Debajyoti Sinha and   
     Garrett M. Fitzmaurice and   
            Bani K. Mallick and   
              Joseph G. Ibrahim   A generalized linear mixed model for
                                  longitudinal binary data with a marginal
                                  logit link function  . . . . . . . . . . 449--467
                Sijian Wang and   
                    Bin Nan and   
             Saharon Rosset and   
                         Ji Zhu   Random lasso . . . . . . . . . . . . . . 468--485
      Karim Anaya-Izquierdo and   
            Frank Critchley and   
                    Karen Vines   Orthogonal simple component analysis: A
                                  new, exploratory approach  . . . . . . . 486--522
                David Bolin and   
                  Finn Lindgren   Spatial models generated by nested
                                  stochastic partial differential
                                  equations, with an application to global
                                  ozone mapping  . . . . . . . . . . . . . 523--550
              Yangxin Huang and   
                   Hulin Wu and   
       Jeanne Holden-Wiltse and   
               Edward P. Acosta   A dynamic Bayesian nonlinear
                                  mixed-effects model of HIV response
                                  incorporating medication adherence, drug
                                  resistance and covariates  . . . . . . . 551--577
               Sungkyu Jung and   
                Mark Foskey and   
                   J. S. Marron   Principal arc analysis on direct product
                                  manifolds  . . . . . . . . . . . . . . . 578--603
    Bhojnarine R. Rambharat and   
           Anthony E. Brockwell   Sequential Monte Carlo pricing of
                                  American-style options under stochastic
                                  volatility models  . . . . . . . . . . . 604

Annals of Applied Statistics
Volume 5, Number 2A, June, 2011

           Susan M. Paddock and   
            Sarah B. Hunter and   
       Katherine E. Watkins and   
            Daniel F. McCaffrey   Analysis of rolling group therapy data
                                  using conditionally autoregressive
                                  priors . . . . . . . . . . . . . . . . . 605--627
            Daniel Percival and   
             Kathryn Roeder and   
             Roni Rosenfeld and   
                Larry Wasserman   Structured, sparse regression with
                                  application to HIV drug resistance . . . 628--644
             David Siegmund and   
             Benjamin Yakir and   
                 Nancy R. Zhang   Detecting simultaneous variant intervals
                                  in aligned sequences . . . . . . . . . . 645--668
                    Yazhen Wang   Quantum Monte Carlo simulation . . . . . 669--683
                 Haiyong Xu and   
       Frederic Paik Schoenberg   Point process modeling of wildfire
                                  hazard in Los Angeles County, California 684--704
            Valeria D'Amato and   
          Gabriella Piscopo and   
               Maria Russolillo   The mortality of the Italian population:
                                  Smoothing techniques on the Lee--Carter
                                  model  . . . . . . . . . . . . . . . . . 705--724
                 Ruiyan Luo and   
                    Hongyu Zhao   Bayesian hierarchical modeling for
                                  signaling pathway inference from single
                                  cell interventional data . . . . . . . . 725--745
                     Xu Han and   
             Dylan S. Small and   
             Dean P. Foster and   
                   Vishal Patel   The effect of winning an Oscar Award on
                                  survival: Correcting for healthy
                                  performer survivor bias with a rank
                                  preserving structural accelerated
                                  failure time model . . . . . . . . . . . 746--772
        Daniel F. McCaffrey and   
                 J. R. Lockwood   Missing data in value-added modeling of
                                  teacher effects  . . . . . . . . . . . . 773--797
              Tze Leung Lai and   
               Haipeng Xing and   
                     Zehao Chen   Mean--variance portfolio optimization
                                  when means and covariances are unknown   798--823
              Jae Kwang Kim and   
            Wayne A. Fuller and   
                William R. Bell   Variance estimation for nearest neighbor
                                  imputation for US Census long form data  824--842
          Anton H. Westveld and   
                  Peter D. Hoff   A mixed effects model for longitudinal
                                  relational and network data, with
                                  applications to international trade and
                                  conflict . . . . . . . . . . . . . . . . 843--872
                 Doug Speed and   
            Simon Tavaré   Sparse Partitioning: Nonlinear
                                  regression with binary or tertiary
                                  predictors, with application to
                                  association studies  . . . . . . . . . . 873--893
          Jeffrey S. Morris and   
Veerabhadran Baladandayuthapani and   
         Richard C. Herrick and   
               Pietro Sanna and   
                Howard Gutstein   Automated analysis of quantitative image
                                  data using isomorphic functional mixed
                                  models, with application to proteomics
                                  data . . . . . . . . . . . . . . . . . . 894--923
                  Ying Yuan and   
                   Guosheng Yin   Bayesian phase I/II adaptively
                                  randomized oncology trials with combined
                                  drugs  . . . . . . . . . . . . . . . . . 924--942
                Amit Zeisel and   
                     Or Zuk and   
                   Eytan Domany   FDR control with adaptive procedures and
                                  FDR monotonicity . . . . . . . . . . . . 943--968
               Adrian Dobra and   
                  Alex Lenkoski   Copula Gaussian graphical models and
                                  their application to modeling functional
                                  disability data  . . . . . . . . . . . . 969--993
                     Jia Li and   
                George C. Tseng   An adaptively weighted statistic for
                                  detecting differential gene expression
                                  when combining multiple transcriptomic
                                  studies  . . . . . . . . . . . . . . . . 994--1019
               Emily B. Fox and   
           Erik B. Sudderth and   
          Michael I. Jordan and   
                Alan S. Willsky   A sticky HDP-HMM with application to
                                  speaker diarization  . . . . . . . . . . 1020--1056
           Michael Finegold and   
                  Mathias Drton   Robust graphical modeling of gene
                                  networks using classical and alternative
                                  $t$-distributions  . . . . . . . . . . . 1057--1080
           Brent A. Johnson and   
                        Qi Long   Survival ensembles by the sum of
                                  pairwise differences with application to
                                  lung cancer microarray studies . . . . . 1081--1101
                Mark Fiecas and   
                 Hernando Ombao   The generalized shrinkage estimator for
                                  the analysis of functional connectivity
                                  of brain signals . . . . . . . . . . . . 1102--1125

Annals of Applied Statistics
Volume 5, Number 2B, June, 2011

                  Karen Kafadar   Special section on statistics in
                                  neuroscience . . . . . . . . . . . . . . 1127--1131
                Xiaoyan Shi and   
          Joseph G. Ibrahim and   
          Jeffrey Lieberman and   
              Martin Styner and   
                   Yimei Li and   
                     Hongtu Zhu   Two-stage empirical likelihood for
                                  longitudinal neuroimaging data . . . . . 1132--1158
              Vincent Q. Vu and   
          Pradeep Ravikumar and   
           Thomas Naselaris and   
            Kendrick N. Kay and   
            Jack L. Gallant and   
                         Bin Yu   Encoding and decoding V1 fMRI responses
                                  to natural images with sparse
                                  nonparametric models . . . . . . . . . . 1159--1182
       Sourabh Bhattacharya and   
                  Ranjan Maitra   A nonstationary nonparametric Bayesian
                                  approach to dynamically modeling
                                  effective connectivity in functional
                                  magnetic resonance imaging experiments   1183--1206
        Christopher J. Long and   
          Patrick L. Purdon and   
          Simona Temereanca and   
              Neil U. Desai and   
Matti S. Hämäläinen and   
                 Emery N. Brown   State-space solutions to the dynamic
                                  magnetoencephalography inverse problem
                                  using high performance computing . . . . 1207--1228
           Yuriy Mishchenko and   
       Joshua T. Vogelstein and   
                  Liam Paninski   A Bayesian approach for inferring
                                  neuronal connectivity from calcium
                                  fluorescent imaging data . . . . . . . . 1229--1261
             Robert E. Kass and   
              Ryan C. Kelly and   
                   Wei-Liem Loh   Assessment of synchrony in multiple
                                  neural spike trains using loglinear
                                  point process models . . . . . . . . . . 1262--1292
            Sofia C. Olhede and   
               Brandon Whitcher   Nonparametric tests of structure for
                                  high angular resolution diffusion
                                  imaging in $Q$-space . . . . . . . . . . 1293--1327
Jenný Brynjarsdóttir and   
               L. Mark Berliner   Bayesian hierarchical modeling for
                                  temperature reconstruction from
                                  geothermal data  . . . . . . . . . . . . 1328--1359
             Lorenzo Trippa and   
            Giovanni Parmigiani   False discovery rates in somatic
                                  mutation studies of cancer . . . . . . . 1360--1378
          David S. Matteson and   
           Mathew W. McLean and   
            Dawn B. Woodard and   
             Shane G. Henderson   Forecasting emergency medical service
                                  call arrival rates . . . . . . . . . . . 1379--1406
          Nozer D. Singpurwalla   Network routing in a dynamic environment 1407--1424
           Andrew C. Thomas and   
            Stephen E. Fienberg   Discussion of ``Network routing in a
                                  dynamic environment''  . . . . . . . . . 1425--1427
              Vishesh Karwa and   
  Aleksandra B. Slavkovi\'c and   
                Eric T. Donnell   Causal inference in transportation
                                  safety studies: Comparison of potential
                                  outcomes and causal diagrams . . . . . . 1428--1455
              Saijuan Zhang and   
         Raymond J. Carroll and   
           Douglas Midthune and   
       Patricia M. Guenther and   
       Susan M. Krebs-Smith and   
              Victor Kipnis and   
              Kevin W. Dodd and   
          Dennis W. Buckman and   
             Janet A. Tooze and   
              Laurence Freedman   A new multivariate measurement error
                                  model with zero-inflated dietary data,
                                  and its application to dietary
                                  assessment . . . . . . . . . . . . . . . 1456--1487
            Leanna L. House and   
           Merlise A. Clyde and   
              Robert L. Wolpert   Bayesian nonparametric models for peak
                                  identification in MALDI-TOF mass
                                  spectroscopy . . . . . . . . . . . . . . 1488--1511
            Irene Rocchetti and   
                 John Bunge and   
           Dankmar Böhning   Population size estimation based upon
                                  ratios of recapture probabilities  . . . 1512--1533
              David Knowles and   
              Zoubin Ghahramani   Nonparametric Bayesian sparse factor
                                  models with application to gene
                                  expression modeling  . . . . . . . . . . 1534--1552
            Andrea Tancredi and   
                  Brunero Liseo   A hierarchical Bayesian approach to
                                  record linkage and population size
                                  problems . . . . . . . . . . . . . . . . 1553--1585
           Rensheng R. Zhou and   
            Nicoleta Serban and   
                  Nagi Gebraeel   Degradation modeling applied to residual
                                  lifetime prediction using functional
                                  data analysis  . . . . . . . . . . . . . 1586--1610
        Björn Bornkamp and   
                Frank Bretz and   
               Holger Dette and   
           José Pinheiro   Response-adaptive dose-finding under
                                  model uncertainty  . . . . . . . . . . . 1611--1631
                   Eric Gautier   Hierarchical Bayesian estimation of
                                  inequality measures with nonrectangular
                                  censored survey data with an application
                                  to wealth distribution of French
                                  households . . . . . . . . . . . . . . . 1632--1656
                    Jo Bovy and   
              David W. Hogg and   
                  Sam T. Roweis   Extreme deconvolution: Inferring
                                  complete distribution functions from
                                  noisy, heterogeneous and incomplete
                                  observations . . . . . . . . . . . . . . 1657--1677
                Qingzhao Yu and   
       Steven N. MacEachern and   
                 Mario Peruggia   Bayesian Synthesis: Combining subjective
                                  analyses, with an application to ozone
                                  data . . . . . . . . . . . . . . . . . . 1678--1698

Annals of Applied Statistics
Volume 5, Number 3, September, 2011

          Juliette Blanchet and   
             Anthony C. Davison   Spatial modeling of extreme snow depth   1699--1725
          Danny Pfeffermann and   
              Victoria Landsman   Are private schools better than public
                                  schools? Appraisal for Ireland by
                                  methods for observational studies  . . . 1726--1751
                  Qunhua Li and   
             James B. Brown and   
               Haiyan Huang and   
                Peter J. Bickel   Measuring reproducibility of
                                  high-throughput experiments  . . . . . . 1752--1779
               Yongtao Guan and   
               Matthew Stephens   Bayesian variable selection regression
                                  for genome-wide association studies and
                                  other large-scale problems . . . . . . . 1780--1815
             Gail E. Potter and   
           Mark S. Handcock and   
        Ira M. Longini, Jr. and   
          M. Elizabeth Halloran   Estimating within-household contact
                                  networks from egocentric data  . . . . . 1816--1838
             Deepak Agarwal and   
                Liang Zhang and   
                 Rahul Mazumder   Modeling item--item similarities for
                                  personalized recommendations on Yahoo!
                                  front page . . . . . . . . . . . . . . . 1839--1875
           Corwin M. Zigler and   
                Thomas R. Belin   The potential for bias in principal
                                  causal effect estimation when treatment
                                  received depends on a key covariate  . . 1876--1892
           Yuriy Mishchenko and   
                  Liam Paninski   Efficient methods for sampling spike
                                  trains in networks of coupled neurons    1893--1919
                 O. Stenzel and   
                 V. Schmidt and   
                H. Hassfeld and   
               R. Thiedmann and   
            L. J. A. Koster and   
           S. D. Oosterhout and   
            S. S. van Bavel and   
                M. M. Wienk and   
                    J. Loos and   
               R. A. J. Janssen   Spatial modeling of the 3D morphology of
                                  hybrid polymer-ZnO solar cells, based on
                                  electron tomography data . . . . . . . . 1920--1947
    Sabyasachi Mukhopadhyay and   
       Sourabh Bhattacharya and   
                  Kajal Dihidar   On Bayesian ``central clustering'':
                                  Application to landscape classification
                                  of Western Ghats . . . . . . . . . . . . 1948--1977
        Francesco C. Stingo and   
               Yian A. Chen and   
          Mahlet G. Tadesse and   
                Marina Vannucci   Incorporating biological information
                                  into linear models: A Bayesian approach
                                  to the selection of pathways and genes   1978--2002
                    Qi Long and   
             Matthias Chung and   
           Carlos S. Moreno and   
               Brent A. Johnson   Risk prediction for prostate cancer
                                  recurrence through regularized
                                  estimation with simultaneous adjustment
                                  for nonlinear clinical effects . . . . . 2003--2023
                Nicoleta Serban   A space--time varying coefficient model:
                                  The equity of service accessibility  . . 2024--2051
                   Yu Zhang and   
                 Jing Zhang and   
                     Jun S. Liu   Block-based Bayesian epistasis
                                  association mapping with application to
                                  WTCCC type 1 diabetes data . . . . . . . 2052--2077
              Debashis Paul and   
                   Jie Peng and   
                  Prabir Burman   Semiparametric modeling of autonomous
                                  nonlinear dynamical systems with
                                  application to plant growth  . . . . . . 2078--2108
                  Zeny Feng and   
         William W. L. Wong and   
                    Xin Gao and   
                Flavio Schenkel   Generalized genetic association study
                                  with samples of related individuals  . . 2109--2130
          Charlotte Soneson and   
                  Magnus Fontes   A method for visual identification of
                                  small sample subgroups and potential
                                  biomarkers . . . . . . . . . . . . . . . 2131--2149
 Miguel A. Martinez-Beneito and   
Gonzalo García-Donato and   
          Diego Salmerón   A Bayesian Joinpoint regression model
                                  with an unknown number of break-points   2150--2168
             Daniel Samarov and   
               J. S. Marron and   
                 Yufeng Liu and   
         Christopher Grulke and   
              Alexander Tropsha   Local kernel canonical correlation
                                  analysis with application to virtual
                                  drug screening . . . . . . . . . . . . . 2169--2196
                 Georg M. Goerg   Lambert $W$ random variables --- a new
                                  family of generalized skewed
                                  distributions with applications to risk
                                  estimation . . . . . . . . . . . . . . . 2197--2230
            Thomas Kitching and   
            Sreekumar Balan and   
             Gary Bernstein and   
            Matthias Bethge and   
               Sarah Bridle and   
           Frederic Courbin and   
               Marc Gentile and   
               Alan Heavens and   
             Michael Hirsch and   
            Reshad Hosseini and   
            Alina Kiessling and   
                 Adam Amara and   
              Donnacha Kirk and   
             Konrad Kuijken and   
          Rachel Mandelbaum and   
           Baback Moghaddam and   
         Guldariya Nurbaeva and   
 Stephane Paulin-Henriksson and   
               Anais Rassat and   
               Jason Rhodes and   
    Bernhard Schölkopf and   
          John Shawe-Taylor and   
               Mandeep Gill and   
            Marina Shmakova and   
                Andy Taylor and   
             Malin Velander and   
       Ludovic van Waerbeke and   
            Dugan Witherick and   
              David Wittman and   
           Stefan Harmeling and   
          Catherine Heymans and   
             Richard Massey and   
               Barnaby Rowe and   
             Tim Schrabback and   
                     Lisa Voigt   Gravitational Lensing Accuracy Testing
                                  2010 (GREAT10) Challenge Handbook  . . . 2231--2263

Annals of Applied Statistics
Volume 5, Number 4, December, 2011

                  Karen Kafadar   Special section on modern multivariate
                                  analysis . . . . . . . . . . . . . . . . 2265
            Omar De la Cruz and   
                   Susan Holmes   The duality diagram in data analysis:
                                  Examples of modern applications  . . . . 2266--2277
       Stéphane Dray and   
                Thibaut Jombart   Revisiting Guerry's data: Introducing
                                  spatial constraints in multivariate
                                  analysis . . . . . . . . . . . . . . . . 2278--2299
                Jean Thioulouse   Simultaneous analysis of a sequence of
                                  paired ecological tables: A comparison
                                  of several methods . . . . . . . . . . . 2300--2325
               Elizabeth Purdom   Analysis of a data matrix and a graph:
                                  Metagenomic data and the phylogenetic
                                  tree . . . . . . . . . . . . . . . . . . 2326--2358
              Stefano Conti and   
           Anne M. Presanis and   
         Maaike G. van Veen and   
              Maria Xiridou and   
         Martin C. Donoghoe and   
 Annemarie Rinder Stengaard and   
             Daniela De Angelis   Modeling of the HIV infection epidemic
                                  in the Netherlands: A multi-parameter
                                  evidence synthesis approach  . . . . . . 2359--2384
      Luis Gutiérrez and   
           Fernando A. Quintana   Multivariate Bayesian semiparametric
                                  models for authentication of food and
                                  beverages  . . . . . . . . . . . . . . . 2385--2402
                 Jacob Bien and   
              Robert Tibshirani   Prototype selection for interpretable
                                  classification . . . . . . . . . . . . . 2403--2424
             Brian J. Reich and   
                 Jo Eidsvik and   
           Michele Guindani and   
                Amy J. Nail and   
           Alexandra M. Schmidt   A class of covariate-dependent
                                  spatiotemporal covariance functions for
                                  the analysis of daily ozone
                                  concentration  . . . . . . . . . . . . . 2425--2447
          Adam R. Brentnall and   
           Stephen W. Duffy and   
          Martin J. Crowder and   
       Maureen G. C. Gillan and   
            Susan M. Astley and   
          Matthew G. Wallis and   
             Jonathan James and   
      Caroline R. M. Boggis and   
               Fiona J. Gilbert   A method for exploratory
                                  repeated-measures analysis applied to a
                                  breast-cancer screening study  . . . . . 2448--2469
            Cari G. Kaufman and   
              Derek Bingham and   
               Salman Habib and   
            Katrin Heitmann and   
              Joshua A. Frieman   Efficient emulators of computer
                                  experiments using compactly supported
                                  correlation functions, with an
                                  application to cosmology . . . . . . . . 2470--2492
              Daniela M. Witten   Classification and clustering of
                                  sequencing data using a Poisson model    2493--2518
                Huiyan Sang and   
               Mikyoung Jun and   
               Jianhua Z. Huang   Covariance approximation for large
                                  multivariate spatial data sets with an
                                  application to multiple climate model
                                  errors . . . . . . . . . . . . . . . . . 2519--2548
       Robert Alan Clements and   
   Frederic Paik Schoenberg and   
            Danijel Schorlemmer   Residual analysis methods for
                                  space--time point processes with
                                  applications to earthquake forecast
                                  models in California . . . . . . . . . . 2549--2571
        Victor M. Panaretos and   
                    Kjell Konis   Sparse approximations of protein
                                  structure from noisy random projections  2572--2602
              Irina Czogiel and   
              Ian L. Dryden and   
        Christopher J. Brignell   Bayesian matching of unlabeled marked
                                  point sets using random fields, with an
                                  application to molecular alignment . . . 2603--2629
                Jianxin Yin and   
                     Hongzhe Li   A sparse conditional Gaussian graphical
                                  model for analysis of genetical genomics
                                  data . . . . . . . . . . . . . . . . . . 2630--2650
     Enrique F. Schisterman and   
              Albert Vexler and   
                   Aijun Ye and   
                Neil J. Perkins   A combined efficient design for
                                  biomarker data subject to a limit of
                                  detection due to measuring instrument
                                  sensitivity  . . . . . . . . . . . . . . 2651--2667
                   Hui Shen and   
           William J. Welch and   
    Jacqueline M. Hughes-Oliver   Efficient, adaptive cross-validation for
                                  tuning and comparing models, with
                                  application to drug discovery  . . . . . 2668--2687


Annals of Applied Statistics
Volume 6, Number 1, March, 2012

             Gail E. Potter and   
           Mark S. Handcock and   
             Ira M. Longini and   
          M. Elizabeth Halloran   Estimating within-school contact
                                  networks to understand influenza
                                  transmission . . . . . . . . . . . . . . 1--26
               Zhiwei Zhang and   
             Paul S. Albert and   
            Bruce Simons-Morton   Marginal analysis of longitudinal count
                                  data in long sequences: Methods and
                                  applications to a driving study  . . . . 27--54
           Edward I. George and   
                     Sam K. Hui   Optimal pricing using online auction
                                  experiments: A Pólya tree approach  . . . 55--82
              Paul R. Rosenbaum   An exact adaptive test with superior
                                  design sensitivity in an observational
                                  study of treatments for ovarian cancer   83--105
          Michael D. Porter and   
                   Gentry White   Self-exciting hurdle models for
                                  terrorist activity . . . . . . . . . . . 106--124
Stéphanie Allassonni\`ere and   
                 Laurent Younes   A stochastic algorithm for probabilistic
                                  independent component analysis . . . . . 125--160
         Nicholas G. Polson and   
                 James G. Scott   Good, great, or lucky? Screening for
                                  firms with sustained superior
                                  performance using heavy-tailed priors    161--185
             Antonio Galves and   
           Charlotte Galves and   
Jesús E. García and   
            Nancy L. Garcia and   
             Florencia Leonardi   Context tree selection and linguistic
                                  rhythm retrieval from written texts  . . 186--209
             Lucio Barabesi and   
            Sara Franceschi and   
             Marzia Marcheselli   Properties of design-based estimation
                                  under stratified spatial sampling with
                                  application to canopy coverage
                                  estimation . . . . . . . . . . . . . . . 210--228
                   Hao Wang and   
               Jerome P. Reiter   Multiple imputation for sharing precise
                                  geographies in public use data . . . . . 229--252
                 Ronny Luss and   
             Saharon Rosset and   
                    Moni Shahar   Efficient regularized isotonic
                                  regression with application to
                                  gene--gene interaction search  . . . . . 253--283
          Hedibert F. Lopes and   
       Alexandra M. Schmidt and   
             Esther Salazar and   
       Mariana Gómez and   
                  Marcel Achkar   Measuring the vulnerability of the
                                  Uruguayan population to vector-borne
                                  diseases via spatially hierarchical
                                  factor models  . . . . . . . . . . . . . 284--303
             Andrea Riebler and   
              Leonhard Held and   
               Håvard Rue   Estimation and extrapolation of time
                                  trends in registry data --- Borrowing
                                  strength from related populations  . . . 304--333
                   Peng Wei and   
                        Wei Pan   Bayesian joint modeling of multiple gene
                                  networks and diverse genomic data to
                                  identify target genes of a transcription
                                  factor . . . . . . . . . . . . . . . . . 334--355
           Chung-Hsing Chen and   
                 Wen-Chi Su and   
               Chih-Yu Chen and   
            Jing-Ying Huang and   
               Fang-Yu Tsai and   
             Wen-Chang Wang and   
             Chao A. Hsiung and   
             King-Song Jeng and   
                   I-Shou Chang   A Bayesian measurement error model for
                                  two-channel cell-based RNAi data with
                                  replicates . . . . . . . . . . . . . . . 356--382
         Joseph W. Richards and   
                 Ann B. Lee and   
            Chad M. Schafer and   
               Peter E. Freeman   Prototype selection for parameter
                                  estimation in complex models . . . . . . 383--408
                   Ying Wei and   
               Zhibiao Zhao and   
               Dennis K. J. Lin   Profile control charts based on
                                  nonparametric $L - 1$ regression methods 409--427

Annals of Applied Statistics
Volume 6, Number 2, June, 2012

                  Karen Kafadar   Special section: Statistical methods for
                                  next-generation gene sequencing data . . 429--431
                    Zhen Li and   
          Vikneswaran Gopal and   
                  Xiaobo Li and   
              John M. Davis and   
                 George Casella   Simultaneous SNP identification in
                                  association studies with missing data    432--456
                 Baiyu Zhou and   
            Alice S. Whittemore   Improving sequence-based genotype calls
                                  with linkage disequilibrium and pedigree
                                  information  . . . . . . . . . . . . . . 457--475
             Jeremy J. Shen and   
                 Nancy R. Zhang   Change-point model on nonhomogeneous
                                  Poisson processes with application in
                                  copy number profiling by next-generation
                                  DNA sequencing . . . . . . . . . . . . . 476--496
              Xi Kathy Zhou and   
                    Fei Liu and   
           Andrew J. Dannenberg   A Bayesian model averaging approach for
                                  observational gene expression studies    497--520
             Loki Natarajan and   
                   Minya Pu and   
                   Karen Messer   Statistical tests for the intersection
                                  of independent lists of genes:
                                  Sensitivity, FDR, and type I error
                                  control  . . . . . . . . . . . . . . . . 521--541
          Donatello Telesca and   
          Peter Müller and   
        Giovanni Parmigiani and   
              Ralph S. Freedman   Modeling dependent gene expression . . . 542--560
              Laurent Jacob and   
             Pierre Neuvial and   
                Sandrine Dudoit   More power via graph-structured tests
                                  for differential expression of gene
                                  networks . . . . . . . . . . . . . . . . 561--600
                  Chong Liu and   
                Surajit Ray and   
               Giles Hooker and   
                    Mark Friedl   Functional factor analysis for periodic
                                  remote sensing data  . . . . . . . . . . 601--624
           Brian M. Hartman and   
            Bani K. Mallick and   
             Debabrata Talukdar   Investigating international new product
                                  diffusion speed: A semiparametric
                                  approach . . . . . . . . . . . . . . . . 625--651
         Tyler H. McCormick and   
              Cynthia Rudin and   
                  David Madigan   Bayesian hierarchical rule modeling for
                                  predicting medical conditions  . . . . . 652--668
         Oleksandr Gromenko and   
             Piotr Kokoszka and   
                    Lie Zhu and   
                      Jan Sojka   Estimation and testing for spatially
                                  indexed curves with application to
                                  ionospheric and magnetic field trends    669--696
                Yu Ryan Yue and   
        Martin A. Lindquist and   
                    Ji Meng Loh   Meta-analysis of functional neuroimaging
                                  data using Bayesian nonparametric binary
                                  regression . . . . . . . . . . . . . . . 697--718
                    Xi Chen and   
                 Qihang Lin and   
                Seyoung Kim and   
         Jaime G. Carbonell and   
                   Eric P. Xing   Smoothing proximal gradient method for
                                  general structured sparse regression . . 719--752
              Guangyu Zhang and   
                      Ying Yuan   Bayesian modeling longitudinal dyadic
                                  data with nonignorable dropout, with
                                  application to a breast cancer study . . 753--771
               Polly Phipps and   
                   Daniell Toth   Analyzing establishment nonresponse
                                  using an interpretable regression tree
                                  model with linked administrative data    772--794
             Julien Chiquet and   
            Yves Grandvalet and   
            Camille Charbonnier   Sparsity with sign-coherent groups of
                                  variables via the cooperative-Lasso  . . 795--830

Annals of Applied Statistics
Volume 6, Number 3, September, 2012

Peter G. M. van der Heijden and   
              Joe Whittaker and   
             Maarten Cruyff and   
                Bart Bakker and   
              Rik van der Vliet   People born in the Middle East but
                                  residing in the Netherlands: Invariant
                                  population size estimates and the role
                                  of active and passive covariates . . . . 831--852
            Kanti V. Mardia and   
              Emma M. Petty and   
              Charles C. Taylor   Matching markers and unlabeled
                                  configurations in protein gels . . . . . 853--869
               Spencer Hays and   
               Haipeng Shen and   
               Jianhua Z. Huang   Functional dynamic factor models with
                                  application to yield curve forecasting   870--894
                Art B. Owen and   
                    Dean Eckles   Bootstrapping data arrays of arbitrary
                                  order  . . . . . . . . . . . . . . . . . 895--927
              Juli Atherton and   
               Nathan Boley and   
                  Ben Brown and   
                Nobuo Ogawa and   
         Stuart M. Davidson and   
           Michael B. Eisen and   
             Mark D. Biggin and   
                   Peter Bickel   A model for sequential evolution of
                                  ligands by exponential enrichment
                                  (SELEX) data . . . . . . . . . . . . . . 928--949
                    Chao Du and   
                      S. C. Kou   Correlation analysis of enzymatic
                                  reaction of a single protein molecule    950--976
            Antoine Chambaz and   
               Christophe Denis   Classification in postural style . . . . 977--993
             Bryony J. Hill and   
         Wilfrid S. Kendall and   
              Elke Thönnes   Fibre-generated point processes and
                                  fields of orientations . . . . . . . . . 994--1020
             Tian Siva Tian and   
           Jianhua Z. Huang and   
               Haipeng Shen and   
                      Zhimin Li   A two-way regularization method for MEG
                                  source reconstruction  . . . . . . . . . 1021--1046
         Omkar Muralidharan and   
          Georges Natsoulis and   
                  John Bell and   
                  Hanlee Ji and   
                 Nancy R. Zhang   Detecting mutations in mixed sample
                                  sequencing data using empirical Bayes    1047--1067
           Natallia Katenka and   
               Eric D. Kolaczyk   Inference and characterization of
                                  multi-attribute networks with
                                  application to computational biology . . 1068--1094
                Seyoung Kim and   
                   Eric P. Xing   Tree-guided group lasso for
                                  multi-response regression with
                                  structured sparsity, with an application
                                  to eQTL mapping  . . . . . . . . . . . . 1095--1117
             Steven P. Lund and   
                  Dan Nettleton   The importance of distinct modeling
                                  strategies for gene and gene-specific
                                  treatment effects in hierarchical models
                                  for microarray data  . . . . . . . . . . 1118--1133
                  Shaoyu Li and   
                     Yuehua Cui   Gene-centric gene--gene interaction: A
                                  model-based kernel machine method  . . . 1134--1161
                  Yong Wang and   
               Ilze Ziedins and   
                Mark Holmes and   
                 Neil Challands   Tree models for difference and change
                                  detection in a complex environment . . . 1162--1184
       Anastasia Voulgaraki and   
             Benjamin Kedem and   
              Barry I. Graubard   Semiparametric regression in testicular
                                  germ cell data . . . . . . . . . . . . . 1185--1208
            Chris. J. Oates and   
                 Sach Mukherjee   Network inference and biological
                                  dynamics . . . . . . . . . . . . . . . . 1209--1235
                    Hai Liu and   
                Shuangge Ma and   
            Richard Kronmal and   
                  Kung-Sik Chan   Semiparametric zero-inflated modeling in
                                  multi-ethnic study of atherosclerosis
                                  (MESA) . . . . . . . . . . . . . . . . . 1236--1255
                      Ying Hung   Order selection in nonlinear time series
                                  models with application to the study of
                                  cell memory  . . . . . . . . . . . . . . 1256--1279
                Donghui Yan and   
                   Pei Wang and   
             Michael Linden and   
           Beatrice Knudsen and   
               Timothy Randolph   Statistical methods for tissue array
                                  images --- algorithmic scoring and
                                  co-training  . . . . . . . . . . . . . . 1280--1305
                 Yue S. Niu and   
                   Heping Zhang   The screening and ranking algorithm to
                                  detect DNA copy number variations  . . . 1306--1326
        Matthias Kormaksson and   
             James G. Booth and   
          Maria E. Figueroa and   
                    Ari Melnick   Integrative Model-based clustering of
                                  microarray methylation and expression
                                  data . . . . . . . . . . . . . . . . . . 1327--1347

Annals of Applied Statistics
Volume 6, Number 4, December, 2012

               Tilmann Gneiting   Section on the Special Year for
                                  Mathematics of Planet Earth (MPE 2013)   1349--1351
         Andrew W. Baggaley and   
            Richard J. Boys and   
           Andrew Golightly and   
           Graeme R. Sarson and   
                 Anvar Shukurov   Inference for population dynamics in the
                                  Neolithic period . . . . . . . . . . . . 1352--1376
      Panu Erästö and   
       Lasse Holmström and   
               Atte Korhola and   
             Jan Weckström   Finding a consensus on credible features
                                  among several paleoclimate
                                  reconstructions  . . . . . . . . . . . . 1377--1405
              Daniel Cooley and   
           Richard A. Davis and   
                Philippe Naveau   Approximating the conditional density
                                  given large observed values via a
                                  multivariate extremes framework, with
                                  application to environmental data  . . . 1406--1429
             Brian J. Reich and   
              Benjamin A. Shaby   A hierarchical max-stable spatial model
                                  for extreme precipitation  . . . . . . . 1430--1451
              Fabio Sigrist and   
        Hans R. Künsch and   
               Werner A. Stahel   A dynamic nonstationary spatio-temporal
                                  model for short term prediction of
                                  precipitation  . . . . . . . . . . . . . 1452--1477
      Giovanna Jona-Lasinio and   
               Alan Gelfand and   
            Mattia Jona-Lasinio   Spatial analysis of wave direction data
                                  using wrapped Gaussian processes . . . . 1478--1498
           Janine B. Illian and   
   Sigrunn H. Sòrbye and   
               Håvard Rue   A toolbox for fitting complex spatial
                                  point process models using integrated
                                  nested Laplace approximation (INLA)  . . 1499--1530
               Trond Reitan and   
              Tore Schweder and   
            Jorijntje Henderiks   Phenotypic evolution studied by layered
                                  stochastic differential equations  . . . 1531--1551
               S. N. Lahiri and   
              C. Spiegelman and   
                  J. Appiah and   
                      L. Rilett   Gap bootstrap methods for massive data
                                  sets with an application to
                                  transportation engineering . . . . . . . 1552--1587
                 Jeng-Min Chiou   Dynamical functional prediction and
                                  classification, with application to
                                  traffic flow prediction  . . . . . . . . 1588--1614
             Gelila Tilahun and   
         Andrey Feuerverger and   
                Michael Gervers   Dating medieval English charters . . . . 1615--1640
 Candemir Çi\ug\csar and   
              Jerald F. Lawless   Assessing transient carryover effects in
                                  recurrent event processes, with
                                  application to chronic health conditions 1641--1663
                Yunting Sun and   
             Nancy R. Zhang and   
                    Art B. Owen   Multiple hypothesis testing adjusted for
                                  latent variables, with an application to
                                  the AGEMAP gene expression data  . . . . 1664--1688
                   Hao Wang and   
              Saul Shiffman and   
         Sandra D. Griffith and   
              Daniel F. Heitjan   Truth and memory: Linking instantaneous
                                  and retrospective self-reported
                                  cigarette consumption  . . . . . . . . . 1689--1706
                Trina Patel and   
          Donatello Telesca and   
                Saji George and   
            André E. Nel   Toxicity profiling of engineered
                                  nanomaterials via multivariate
                                  dose-response surface modeling . . . . . 1707--1729
            Vural Aksakalli and   
                   Elvan Ceyhan   Optimal obstacle placement with
                                  disambiguations  . . . . . . . . . . . . 1730--1774
                  Qunhua Li and   
               Jimmy K. Eng and   
               Matthew Stephens   A likelihood-based scoring method for
                                  peptide identification using mass
                                  spectrometry . . . . . . . . . . . . . . 1775--1794
         Tyler H. McCormick and   
                     Tian Zheng   Latent demographic profile estimation in
                                  hard-to-reach groups . . . . . . . . . . 1795--1813
             Juned Siddique and   
                 Ofer Harel and   
            Catherine M. Crespi   Addressing missing data mechanism
                                  uncertainty using multiple-model
                                  multiple imputation: Application to a
                                  longitudinal clinical trial  . . . . . . 1814--1837
                    Shan Ba and   
               V. Roshan Joseph   Composite Gaussian process models for
                                  emulating expensive functions  . . . . . 1838--1860
                    Hai Liu and   
                      Wanzhu Tu   A semiparametric regression model for
                                  paired longitudinal outcomes with
                                  application in childhood blood pressure
                                  development  . . . . . . . . . . . . . . 1861--1882
               M. Filippone and   
             A. F. Marquand and   
             C. R. V. Blain and   
          S. C. R. Williams and   
   J. Mourão-Miranda and   
                    M. Girolami   Probabilistic prediction of neurological
                                  disorders with a statistical assessment
                                  of neuroimaging data modalities  . . . . 1883--1905
           John A. D. Aston and   
                  Claudia Kirch   Evaluating stationarity via change-point
                                  alternatives with applications to fMRI
                                  data . . . . . . . . . . . . . . . . . . 1906--1948
            Guido Masarotto and   
                Cristiano Varin   The ranking lasso and its application to
                                  sport tournaments  . . . . . . . . . . . 1949--1970
                  Bradley Efron   Bayesian inference and the parametric
                                  bootstrap  . . . . . . . . . . . . . . . 1971--1997


Annals of Applied Statistics
Volume 7, Number 1, March, 2013

               Micha Mandel and   
             Manor Askenazi and   
                   Yi Zhang and   
                Jarrod A. Marto   Variance function estimation in
                                  quantitative mass spectrometry with
                                  application to iTRAQ labeling  . . . . . 1--24
 José R. Zubizarreta and   
             Dylan S. Small and   
             Neera K. Goyal and   
                Scott Lorch and   
              Paul R. Rosenbaum   Stronger instruments via integer
                                  programming in an observational study of
                                  late preterm birth outcomes  . . . . . . 25--50
          Robert B. Gramacy and   
                 Matt Taddy and   
                 Stefan M. Wild   Variable selection and sensitivity
                                  analysis using dynamic trees, with an
                                  application to computer code performance
                                  tuning . . . . . . . . . . . . . . . . . 51--80
              Francesco Finazzi   Geostatistical modeling in the presence
                                  of interaction between the measuring
                                  instruments, with an application to the
                                  estimation of spatial market potentials  81--101
                  Ying Yuan and   
                 Hongtu Zhu and   
              Martin Styner and   
            John H. Gilmore and   
                   J. S. Marron   Varying coefficient model for modeling
                                  diffusion tensors along white matter
                                  tracts . . . . . . . . . . . . . . . . . 102--125
              Xiaojing Wang and   
            James O. Berger and   
              Donald S. Burdick   Bayesian analysis of dynamic item
                                  response models in educational testing   126--153
             Harrison Quick and   
           Sudipto Banerjee and   
              Bradley P. Carlin   Modeling temporal gradients in
                                  regionally aggregated California asthma
                                  hospitalization data . . . . . . . . . . 154--176
    Arno\vst Komárek and   
  Lenka Komárková   Clustering for multivariate continuous
                                  and discrete longitudinal data . . . . . 177--200
                     Tao Yu and   
             Chunming Zhang and   
        Andrew L. Alexander and   
            Richard J. Davidson   Local tests for identifying anisotropic
                                  diffusion areas in human brain with DTI  201--225
             Andreas Alfons and   
           Christophe Croux and   
                   Sarah Gelper   Sparse least trimmed squares regression
                                  for analyzing high-dimensional large
                                  data sets  . . . . . . . . . . . . . . . 226--248
              Jingyuan Yang and   
                      Shili Lin   Robust partial likelihood approach for
                                  detecting imprinting and maternal
                                  effects using case-control families  . . 249--268
               Ronglai Shen and   
                Sijian Wang and   
                    Qianxing Mo   Sparse integrative clustering of
                                  multiple omics data sets . . . . . . . . 269--294
                    Winston Lin   Agnostic notes on regression adjustments
                                  to experimental data: Reexamining
                                  Freedman's critique  . . . . . . . . . . 295--318
           Debbie J. Dupuis and   
       Maria-Pia Victoria-Feser   Robust VIF regression with application
                                  to variable selection in large data sets 319--341
                  Minge Xie and   
              Regina Y. Liu and   
             C. V. Damaraju and   
               William H. Olson   Incorporating external information in
                                  analyses of clinical trials with binary
                                  outcomes . . . . . . . . . . . . . . . . 342--368
              Matti Pirinen and   
             Peter Donnelly and   
            Chris C. A. Spencer   Efficient computation with a linear
                                  mixed model on large-scale data sets
                                  with applications to genetic studies . . 369--390
                  Shuang Li and   
                     Li Hsu and   
                   Jie Peng and   
                       Pei Wang   Bootstrap inference for network
                                  construction with an application to a
                                  breast cancer microarray study . . . . . 391--417
                   Jun Chen and   
                     Hongzhe Li   Variable selection for sparse
                                  Dirichlet-multinomial regression with an
                                  application to microbiome data analysis  418--442
                Kosuke Imai and   
                  Marc Ratkovic   Estimating treatment effect
                                  heterogeneity in randomized program
                                  evaluation . . . . . . . . . . . . . . . 443--470
          Armin Schwartzman and   
               Andrew Jaffe and   
             Yulia Gavrilov and   
              Clifford A. Meyer   Multiple testing of local maxima for
                                  detection of peaks in ChIP-Seq data  . . 471--494
                Wei-Yin Loh and   
                      Wei Zheng   Regression trees for longitudinal and
                                  multiresponse data . . . . . . . . . . . 495--522
               Eric F. Lock and   
       Katherine A. Hoadley and   
               J. S. Marron and   
                Andrew B. Nobel   Joint and individual variation explained
                                  (JIVE) for integrated analysis of
                                  multiple data types  . . . . . . . . . . 523--542
                  Jaeil Ahn and   
          Bhramar Mukherjee and   
          Stephen B. Gruber and   
                    Malay Ghosh   Bayesian semiparametric analysis for
                                  two-phase studies of gene-environment
                                  interaction  . . . . . . . . . . . . . . 543--569
           Robert T. Krafty and   
                   Martica Hall   Canonical correlation analysis between
                                  time series and static outcomes, with
                                  application to the spectral analysis of
                                  heart rate variability . . . . . . . . . 570--587
            William Kleiber and   
            Richard W. Katz and   
             Balaji Rajagopalan   Daily minimum and maximum temperature
                                  simulation over complex terrain  . . . . 588--612

Annals of Applied Statistics
Volume 7, Number 2, June, 2013

               Thomas Rusch and   
            Paul Hofmarcher and   
         Reinhold Hatzinger and   
                    Kurt Hornik   Model trees with topic model
                                  preprocessing: An approach for data
                                  journalism illustrated with the
                                  WikiLeaks Afghanistan war logs . . . . . 613--639
           Bledar A. Konomi and   
            Soma S. Dhavala and   
           Jianhua Z. Huang and   
              Subrata Kundu and   
              David Huitink and   
                 Hong Liang and   
                    Yu Ding and   
                Bani K. Mallick   Bayesian object classification of gold
                                  nanoparticles  . . . . . . . . . . . . . 640--668
            Andrew Crossett and   
                 Ann B. Lee and   
             Lambertus Klei and   
              Bernie Devlin and   
                 Kathryn Roeder   Refining genetically inferred
                                  relationships using treelet covariance
                                  smoothing  . . . . . . . . . . . . . . . 669--690
              Ricardo Henao and   
           J. Will Thompson and   
          M. Arthur Moseley and   
       Geoffrey S. Ginsburg and   
             Lawrence Carin and   
                Joseph E. Lucas   Latent protein trees . . . . . . . . . . 691--713
              Julia Mortera and   
               Paola Vicard and   
                Cecilia Vergari   Object-oriented Bayesian networks for a
                                  decision support system for antitrust
                                  enforcement  . . . . . . . . . . . . . . 714--738
                Brian Reich and   
              Daniel Cooley and   
              Kristen Foley and   
           Sergey Napelenok and   
                 Benjamin Shaby   Extreme value analysis for evaluating
                                  ozone control strategies . . . . . . . . 739--762
         Pasquale Valentini and   
             Luigi Ippoliti and   
                Lara Fontanella   Modeling US housing prices by spatial
                                  dynamic structural equation models . . . 763--798
     Vinicius Diniz Mayrink and   
            Joseph Edward Lucas   Sparse latent factor models with
                                  interactions: Analysis of gene
                                  expression data  . . . . . . . . . . . . 799--822
   Gwenaël G. R. Leday and   
       Aad W. van der Vaart and   
    Wessel N. van Wieringen and   
            Mark A. van de Wiel   Modeling association between DNA copy
                                  number and gene expression with
                                  constrained piecewise linear regression
                                  splines  . . . . . . . . . . . . . . . . 823--845
           Joseph B. Kadane and   
    Ferdinand L. Næshagen   The number of killings in southern rural
                                  Norway, 1300--1569 . . . . . . . . . . . 846--859
           Travis L. Gaydos and   
           Nancy E. Heckman and   
           Mark Kirkpatrick and   
          J. R. Stinchcombe and   
            Johanna Schmitt and   
            Joel Kingsolver and   
                   J. S. Marron   Visualizing genetic constraints  . . . . 860--882
                   Jie Ding and   
             Lorenzo Trippa and   
             Xiaogang Zhong and   
            Giovanni Parmigiani   Hierarchical Bayesian analysis of
                                  somatic mutation data in cancer  . . . . 883--903
               Jiaping Wang and   
                 Hongtu Zhu and   
               Jianqing Fan and   
           Kelly Giovanello and   
                      Weili Lin   Multiscale adaptive smoothing models for
                                  the hemodynamic response function in
                                  fMRI . . . . . . . . . . . . . . . . . . 904--935
        Richard B. Chandler and   
                J. Andrew Royle   Spatially explicit models for inference
                                  about density in unmarked or partially
                                  marked populations . . . . . . . . . . . 936--954
         Alberto Sorrentino and   
           Adam M. Johansen and   
           John A. D. Aston and   
          Thomas E. Nichols and   
             Wilfrid S. Kendall   Dynamic filtering of static dipoles in
                                  magnetoencephalography . . . . . . . . . 955--988
            Kanti V. Mardia and   
    Christopher J. Fallaize and   
              Stuart Barber and   
         Richard M. Jackson and   
            Douglas L. Theobald   Bayesian alignment of similarity shapes  989--1009
                  Duy Q. Vu and   
            David R. Hunter and   
          Michael Schweinberger   Model-based clustering of large networks 1010--1039
            Gilles Faÿ and   
       Jacques Delabrouille and   
Gérard Kerkyacharian and   
               Dominique Picard   Testing the isotropy of high energy
                                  cosmic rays using spherical needlets . . 1040--1073
       Terrance D. Savitsky and   
               Susan M. Paddock   Bayesian nonparametric hierarchical
                                  modeling for multiple membership data in
                                  grouped attendance interventions . . . . 1074--1094
                  I-Ping Tu and   
            Shao-Hsuan Wang and   
                  Yuan-Fu Huang   Estimating the occurrence rate of DNA
                                  palindromes  . . . . . . . . . . . . . . 1095--1110
                  Ran Zhang and   
              Claudia Czado and   
                  Karin Sigloch   A Bayesian linear model for the
                                  high-dimensional inverse problem of
                                  seismic tomography . . . . . . . . . . . 1111--1138
       Bradford S. Westgate and   
            Dawn B. Woodard and   
          David S. Matteson and   
             Shane G. Henderson   Travel time estimation for ambulances
                                  using Bayesian data augmentation . . . . 1139--1161
           Michael L. Stein and   
                   Jie Chen and   
                 Mihai Anitescu   Stochastic approximation of score
                                  functions for Gaussian processes . . . . 1162--1191
            Florence Forbes and   
     Myriam Charras-Garrido and   
               Lamiae Azizi and   
                Senan Doyle and   
                   David Abrial   Spatial risk mapping for rare disease
                                  with hidden Markov fields and
                                  variational EM . . . . . . . . . . . . . 1192--1216
                   Makram Talih   A reference-invariant health disparity
                                  index based on Rényi divergence . . . . . 1217--1243
                    Yuao Hu and   
                    Ye Tian and   
                      Heng Lian   Letter to the Editor . . . . . . . . . . 1244--1246
             Michael R. Kosorok   Correction: Discussion of Brownian
                                  distance covariance  . . . . . . . . . . 1247
                  Andrew Gelman   Correction: Should the Democrats move to
                                  the left on economic policy? . . . . . . 1248

Annals of Applied Statistics
Volume 7, Number 3, September, 2013

           Kunlaya Soiaporn and   
             David Chernoff and   
              Thomas Loredo and   
              David Ruppert and   
                  Ira Wasserman   Multilevel Bayesian framework for
                                  modeling the production, propagation and
                                  detection of ultra-high energy cosmic
                                  rays . . . . . . . . . . . . . . . . . . 1249--1285
            William Kleiber and   
            Stephan R. Sain and   
          Matthew J. Heaton and   
         Michael Wiltberger and   
             C. Shane Reese and   
                  Derek Bingham   Parameter tuning for a multi-fidelity
                                  dynamical model of the magnetosphere . . 1286--1310
              Arwen Meister and   
                Ye Henry Li and   
               Bokyung Choi and   
                 Wing Hung Wong   Learning a nonlinear dynamical system
                                  model of gene regulation: A perturbed
                                  steady-state approach  . . . . . . . . . 1311--1333
           Audrey Qiuyan Fu and   
             Steven Russell and   
              Sarah J. Bray and   
            Simon Tavaré   Bayesian clustering of replicated
                                  time-course gene expression data with
                                  weak signals . . . . . . . . . . . . . . 1334--1361
          Edward L. Ionides and   
                  Zhen Wang and   
  José A. Tapia Granados   Macroeconomic effects on mortality
                                  revealed by panel analysis with
                                  nonlinear trends . . . . . . . . . . . . 1362--1385
              Jennifer Hill and   
                     Yu-Sung Su   Assessing lack of common support in
                                  causal inference using Bayesian
                                  nonparametrics: Implications for
                                  evaluating the effect of breastfeeding
                                  on children's cognitive outcomes . . . . 1386--1420
           Joshua P. French and   
                Stephan R. Sain   Spatio-temporal exceedance locations and
                                  confidence regions . . . . . . . . . . . 1421--1449
             Tevfik Aktekin and   
                Refik Soyer and   
                        Feng Xu   Assessment of mortgage default risk via
                                  Bayesian state space models  . . . . . . 1450--1473
                   Qing Pan and   
            Joseph L. Gastwirth   Estimating restricted mean job tenures
                                  in semi-competing risk data compensating
                                  victims of discrimination  . . . . . . . 1474--1496
               A. C. Thomas and   
          Samuel L. Ventura and   
            Shane T. Jensen and   
                     Stephen Ma   Competing process hazard function models
                                  for player ratings in ice hockey . . . . 1497--1524
                  George Mohler   Modeling and estimation of multi-source
                                  clustering in crime and security data    1525--1539
             Lingsong Zhang and   
               Haipeng Shen and   
               Jianhua Z. Huang   Robust regularized singular value
                                  decomposition with application to
                                  mortality data . . . . . . . . . . . . . 1540--1561
                  Dominik Liebl   Modeling and forecasting electricity
                                  spot prices: A functional data
                                  perspective  . . . . . . . . . . . . . . 1562--1592
         Stefano Castruccio and   
               Michael L. Stein   Global space--time models for climate
                                  ensembles  . . . . . . . . . . . . . . . 1593--1611
               Thomas Rusch and   
                   Ilro Lee and   
                Kurt Hornik and   
              Wolfgang Jank and   
                  Achim Zeileis   Influencing elections with statistics:
                                  Targeting voters with logistic
                                  regression trees . . . . . . . . . . . . 1612--1639
                 Ying Huang and   
           Margaret S. Pepe and   
                    Ziding Feng   Logistic regression analysis with
                                  standardized markers . . . . . . . . . . 1640--1662
                 Wanlu Deng and   
                   Zhi Geng and   
                     Hongzhe Li   Learning local directed acyclic graphs
                                  based on multivariate time series data   1663--1683
            Joseph Guinness and   
               Michael L. Stein   Interpolation of nonstationary high
                                  frequency spatial--temporal temperature
                                  data . . . . . . . . . . . . . . . . . . 1684--1708
            Roland Langrock and   
                      Ruth King   Maximum likelihood estimation of
                                  mark--recapture--recovery models in the
                                  presence of continuous covariates  . . . 1709--1732
             Johanna Hardin and   
       Stephan Ramon Garcia and   
                    David Golan   A method for generating realistic
                                  correlation matrices . . . . . . . . . . 1733--1762
                Lixun Zhang and   
               Yongtao Guan and   
          Brian P. Leaderer and   
            Theodore R. Holford   Estimating daily nitrogen dioxide level:
                                  Exploring traffic effects  . . . . . . . 1763--1777
           Charles J. Geyer and   
         Caroline E. Ridley and   
            Robert G. Latta and   
          Julie R. Etterson and   
                   Ruth G. Shaw   Local adaptation and genetic effects on
                                  fitness: Calculations for exponential
                                  family models with random effects  . . . 1778--1795
                    Lei Nie and   
               Zhiwei Zhang and   
               Daniel Rubin and   
                  Jianxiong Chu   Likelihood reweighting methods to reduce
                                  potential bias in noninferiority trials
                                  which rely on historical data to make
                                  inference  . . . . . . . . . . . . . . . 1796--1813
            Christopher Yau and   
          Christopher C. Holmes   A decision-theoretic approach for
                                  segmental classification . . . . . . . . 1814--1835

Annals of Applied Statistics
Volume 7, Number 4, December, 2013

               Susan M. Paddock   Editorial  . . . . . . . . . . . . . . . 1837
              Aaron Clauset and   
                   Ryan Woodard   Estimating the historical and future
                                  probabilities of large terrorist events  1838--1865
                  George Mohler   Discussion of ``Estimating the
                                  historical and future probabilities of
                                  large terrorist events'' by Aaron
                                  Clauset and Ryan Woodard . . . . . . . . 1866--1870
             Brian J. Reich and   
              Michael D. Porter   Discussion of ``Estimating the
                                  historical and future probabilities of
                                  large terrorist events'' by Aaron
                                  Clauset and Ryan Woodard . . . . . . . . 1871--1875
                   Gentry White   Discussion of ``Estimating the
                                  historical and future probabilities of
                                  large terrorist events'' by Aaron
                                  Clauset and Ryan Woodard . . . . . . . . 1876--1880
                      Jeff Gill   Discussion of ``Estimating the
                                  historical and future probabilities of
                                  large terrorist events'' by Aaron
                                  Clauset and Ryan Woodard . . . . . . . . 1881--1887
       Frederic Paik Schoenberg   Discussion of ``Estimating the
                                  historical and future probabilities of
                                  large terrorist events'' by Aaron
                                  Clauset and Ryan Woodard . . . . . . . . 1888--1890
                Qiurong Cui and   
                  Karl Rohe and   
                 Zhengjun Zhang   Discussion of ``Estimating the
                                  historical and future probabilities of
                                  large terrorist events'' by Aaron
                                  Clauset and Ryan Woodard . . . . . . . . 1891--1894
              Aaron Clauset and   
                   Ryan Woodard   Rejoinder of ``Estimating the historical
                                  and future probabilities of large
                                  terrorist events'' by Aaron Clauset and
                                  Ryan Woodard . . . . . . . . . . . . . . 1895--1897
             Mark A. Newell and   
                Dianne Cook and   
              Heike Hofmann and   
               Jean-Luc Jannink   An algorithm for deciding the number of
                                  clusters and validation using simulated
                                  data with application to exploring crop
                                  population structure . . . . . . . . . . 1898--1916
            William Fithian and   
                  Trevor Hastie   Finite-sample equivalence in statistical
                                  models for presence-only data  . . . . . 1917--1939
              Ming-Hung Kao and   
            Dibyen Majumdar and   
            Abhyuday Mandal and   
                   John Stufken   Maximin and maximin-efficient
                                  event-related fMRI designs under a
                                  nonlinear model  . . . . . . . . . . . . 1940--1959
Bärbel Finkenstädt and   
            Dan J. Woodcock and   
          Michal Komorowski and   
           Claire V. Harper and   
         Julian R. E. Davis and   
           Mike R. H. White and   
                  David A. Rand   Quantifying intrinsic and extrinsic
                                  noise in gene transcription using the
                                  linear noise approximation: An
                                  application to single cell data  . . . . 1960--1982
           Jeroen Pannekoek and   
             Natalie Shlomo and   
                    Ton De Waal   Calibrated imputation of numerical data
                                  under linear edit restrictions . . . . . 1983--2006
            Yuval Benjamini and   
                         Bin Yu   The shuffle estimator for explainable
                                  variance in fMRI experiments . . . . . . 2007--2033
                Giwhyun Lee and   
               Eunshin Byon and   
               Lewis Ntaimo and   
                        Yu Ding   Bayesian spline method for assessing
                                  extreme loads on wind turbines . . . . . 2034--2061
       Elizabeth A. Handorf and   
         Justin E. Bekelman and   
          Daniel F. Heitjan and   
                  Nandita Mitra   Evaluating costs with unmeasured
                                  confounding: A sensitivity analysis for
                                  the treatment effect . . . . . . . . . . 2062--2080
             Andrey Feuerverger   The tomb next door: An update to
                                  ``Statistical analysis of an
                                  archeological find'' . . . . . . . . . . 2081--2105
          Alisa J. Stephens and   
  Eric J. Tchetgen Tchetgen and   
             Victor De Gruttola   Flexible covariate-adjusted exact tests
                                  of randomized treatment effects with
                                  application to a trial of HIV education  2106--2137
                   Suyu Liu and   
               Guosheng Yin and   
                      Ying Yuan   Bayesian data augmentation dose finding
                                  with continual reassessment method and
                                  delayed toxicity . . . . . . . . . . . . 2138--2156
       Nicolas Städler and   
                 Sach Mukherjee   Penalized estimation in high-dimensional
                                  hidden Markov models with state-specific
                                  graphical models . . . . . . . . . . . . 2157--2179
                  Xun Jiang and   
               Dipak K. Dey and   
             Rachel Prunier and   
             Adam M. Wilson and   
              Kent E. Holsinger   A new class of flexible link functions
                                  with application to species
                                  co-occurrence in Cape Floristic Region   2180--2204
               Yuping Zhang and   
                   Ronald Davis   Principal trend analysis for time-course
                                  data with applications in genomic
                                  medicine . . . . . . . . . . . . . . . . 2205--2228
                Zhigen Zhao and   
                   Wei Wang and   
                        Zhi Wei   An empirical Bayes testing procedure for
                                  detecting variants in analysis of next
                                  generation sequencing data . . . . . . . 2229--2248
               Zhi-Sheng Ye and   
                  Yili Hong and   
                     Yimeng Xie   How do heterogeneities in operating
                                  environments affect field failure
                                  predictions and test planning? . . . . . 2249--2271
         Philip S. Boonstra and   
          Bhramar Mukherjee and   
            Jeremy M. G. Taylor   Bayesian shrinkage methods for partially
                                  observed data with many predictors . . . 2272--2292
          Alessio Farcomeni and   
             Daria Scacciatelli   Heterogeneity and behavioral response in
                                  continuous time capture--recapture, with
                                  application to street cannabis use in
                                  Italy  . . . . . . . . . . . . . . . . . 2293--2314
            Charles R. Doss and   
            Marc A. Suchard and   
                 Ian Holmes and   
          Midori Kato-Maeda and   
              Vladimir N. Minin   Fitting birth--death processes to panel
                                  data with applications to bacterial DNA
                                  fingerprinting . . . . . . . . . . . . . 2315--2335
          Alessandra Mattei and   
                     Fan Li and   
                Fabrizia Mealli   Exploiting multiple outcomes in Bayesian
                                  principal stratification analysis with
                                  application to the evaluation of a job
                                  training program . . . . . . . . . . . . 2336--2360
             Jonathan Gruhl and   
          Elena A. Erosheva and   
                  Paul K. Crane   A semiparametric approach to mixed
                                  outcome latent variable models:
                                  Estimating the association between
                                  cognition and regional brain volumes . . 2361--2383
    Jérémie Bigot   Fréchet means of curves for signal
                                  averaging and application to ECG data
                                  analysis . . . . . . . . . . . . . . . . 2384--2401
         Vasanthan Raghavan and   
              Aram Galstyan and   
       Alexander G. Tartakovsky   Hidden Markov models for the activity
                                  profile of terrorist groups  . . . . . . 2402--2430
         Edoardo M. Airoldi and   
               Xiaopei Wang and   
                   Xiaodong Lin   Multi-way blockmodels for analyzing
                                  coordinated high-dimensional responses   2431--2457


Annals of Applied Statistics
Volume 8, Number 1, March, 2014

             Curtis Storlie and   
             Blake Anderson and   
          Scott Vander Wiel and   
               Daniel Quist and   
                Curtis Hash and   
                   Nathan Brown   Stochastic identification of malware
                                  with dynamic traces  . . . . . . . . . . 1--18
        Alexander Volfovsky and   
                  Peter D. Hoff   Hierarchical array priors for ANOVA
                                  decompositions of cross-classified data  19--47
                   Fan Yang and   
             Scott A. Lorch and   
                 Dylan S. Small   Estimation of causal effects using
                                  instrumental variables with nonignorable
                                  missing covariates: Application to
                                  effect of type of delivery NICU on
                                  premature infants  . . . . . . . . . . . 48--73
            Annamaria Guolo and   
                Cristiano Varin   Beta regression for time series analysis
                                  of bounded data, with application to
                                  Canada Google$^\reg $ Flu Trends . . . . 74--88
              Yogesh Virkar and   
                  Aaron Clauset   Power-law distributions in binned
                                  empirical data . . . . . . . . . . . . . 89--119
          Bailey K. Fosdick and   
                  Peter D. Hoff   Separable factor analysis with
                                  applications to mortality data . . . . . 120--147
            Alberto Cassese and   
           Michele Guindani and   
          Mahlet G. Tadesse and   
         Francesco Falciani and   
                Marina Vannucci   A hierarchical Bayesian model for
                                  inference of copy number variants and
                                  their association to gene expression . . 148--175
               Xiaoquan Wen and   
               Matthew Stephens   Bayesian methods for genetic association
                                  analysis with heterogeneous subgroups:
                                  From meta-analyses to gene--environment
                                  interactions . . . . . . . . . . . . . . 176--203
 José R. Zubizarreta and   
         Ricardo D. Paredes and   
              Paul R. Rosenbaum   Matching for balance, pairing for
                                  heterogeneity in an observational study
                                  of the effectiveness of for-profit and
                                  not-for-profit high schools in Chile . . 204--231
              Darren Wraith and   
           Kerrie Mengersen and   
               Clair Alston and   
            Judith Rousseau and   
                  Tareq Hussein   Using informative priors in the
                                  estimation of mixtures over time with
                                  application to aerosol particle size
                                  distributions  . . . . . . . . . . . . . 232--258
               Ting-Li Chen and   
               Dai-Ni Hsieh and   
                  Hung Hung and   
                  I-Ping Tu and   
               Pei-Shien Wu and   
                 Yi-Ming Wu and   
              Wei-Hau Chang and   
                   Su-Yun Huang   $ \gamma $-SUP: A clustering algorithm
                                  for cryo-electron microscopy images of
                                  asymmetric particles . . . . . . . . . . 259--285
           Nicolle Clements and   
            Sanat K. Sarkar and   
                Zhigen Zhao and   
                   Dong-Yun Kim   Applying multiple testing procedures to
                                  detect change in East African vegetation 286--308
              David Rossell and   
Camille Stephan-Otto Attolini and   
              Manuel Kroiss and   
            Almond Stöcker   Quantifying alternative splicing from
                                  paired-end RNA-sequencing data . . . . . 309--330
                 E. G. Hill and   
                    E. H. Slate   A semi-parametric Bayesian model of
                                  inter- and intra-examiner agreement for
                                  periodontal probing depth  . . . . . . . 331--351
            Yen-Tsung Huang and   
       Tyler J. VanderWeele and   
                     Xihong Lin   Joint analysis of SNP and gene
                                  expression data in genetic association
                                  studies of complex diseases  . . . . . . 352--376
             Yacine Jernite and   
            Pierre Latouche and   
          Charles Bouveyron and   
             Patrick Rivera and   
              Laurent Jegou and   
 Stéphane Lamassé   The random subgraph model for the
                                  analysis of an ecclesiastical network in
                                  Merovingian Gaul . . . . . . . . . . . . 377--405
           Matthew Reimherr and   
                    Dan Nicolae   A functional data analysis approach for
                                  genetic association studies  . . . . . . 406--429
               Doyo G. Enki and   
            Angela Noufaily and   
            C. Paddy Farrington   A time-varying shared frailty model with
                                  application to infectious diseases . . . 430--447
                   Xin Wang and   
                    Ke Yuan and   
         Christoph Hellmayr and   
                    Wei Liu and   
              Florian Markowetz   Reconstructing evolving signalling
                                  networks by hidden Markov nested effects
                                  models . . . . . . . . . . . . . . . . . 448--480
                Ruth Heller and   
               Daniel Yekutieli   Replicability analysis for genome-wide
                                  association studies  . . . . . . . . . . 481--498
                 Jinzhu Jia and   
              Luke Miratrix and   
                     Bin Yu and   
               Brian Gawalt and   
          Laurent El Ghaoui and   
           Luke Barnesmoore and   
                 Sophie Clavier   Concise comparative summaries (CCS) of
                                  large text corpora with a human
                                  experiment . . . . . . . . . . . . . . . 499--529
                Jingyong Su and   
           Sebastian Kurtek and   
               Eric Klassen and   
                Anuj Srivastava   Statistical analysis of trajectories on
                                  Riemannian manifolds: Bird migration,
                                  hurricane tracking and video
                                  surveillance . . . . . . . . . . . . . . 530--552
              Kung-Sik Chan and   
                Jinzheng Li and   
          William Eichinger and   
                      Erwei Bai   Testing for shielding of special nuclear
                                  weapon materials . . . . . . . . . . . . 553--576
                 Fukang Zhu and   
                 Zongwu Cai and   
                     Liang Peng   Predictive regressions for macroeconomic
                                  data . . . . . . . . . . . . . . . . . . 577--594
              Hajo Holzmann and   
                Matthias Eulert   The role of the information set for
                                  forecasting --- with applications to
                                  risk management  . . . . . . . . . . . . 595--621
           Nicolas Raillard and   
             Pierre Ailliot and   
                   Jianfeng Yao   Modeling extreme values of processes
                                  observed at irregular time steps:
                                  Application to significant wave height   622--647

Annals of Applied Statistics
Volume 8, Number 2, June, 2014

                  Won Chang and   
               Murali Haran and   
                Roman Olson and   
                   Klaus Keller   Fast dimension-reduced climate model
                                  calibration and the effect of data
                                  aggregation  . . . . . . . . . . . . . . 649--673
          Susanne Ditlevsen and   
                 Adeline Samson   Estimation in the partially observed
                                  stochastic Morris--Lecar neuronal model
                                  with particle filter and stochastic
                                  approximation methods  . . . . . . . . . 674--702
      Mireille E. Schnitzer and   
       Mark J. van der Laan and   
         Erica E. M. Moodie and   
                Robert W. Platt   Effect of breastfeeding on
                                  gastrointestinal infection in infants: A
                                  targeted maximum likelihood approach for
                                  clustered longitudinal data  . . . . . . 703--725
            Brian D. M. Tom and   
         Vernon T. Farewell and   
                 Sheila M. Bird   Maximum likelihood and pseudo score
                                  approaches for parametric time-to-event
                                  analysis with informative entry times    726--746
           Damien McParland and   
      Isobel Claire Gormley and   
         Tyler H. McCormick and   
            Samuel J. Clark and   
Chodziwadziwa Whiteson Kabudula and   
              Mark A. Collinson   Clustering South African households
                                  based on their asset status using latent
                                  variable models  . . . . . . . . . . . . 747--776
                   Chi Song and   
                George C. Tseng   Hypothesis setting and order statistic
                                  for robust genomic meta-analysis . . . . 777--800
             Daisy Phillips and   
                 Debashis Ghosh   Testing the disjunction hypothesis using
                                  Voronoi diagrams with applications to
                                  genetics . . . . . . . . . . . . . . . . 801--823
                 Zheyang Wu and   
                 Yiming Sun and   
                 Shiquan He and   
                   Judy Cho and   
                Hongyu Zhao and   
                    Jiashun Jin   Detection boundary and Higher Criticism
                                  approach for rare and weak genetic
                                  effects  . . . . . . . . . . . . . . . . 824--851
              Isabel Molina and   
           Balgobin Nandram and   
                   J. N. K. Rao   Small area estimation of general
                                  parameters with application to poverty
                                  indicators: A hierarchical Bayes
                                  approach . . . . . . . . . . . . . . . . 852--885
            Inna Chervoneva and   
              Boris Freydin and   
              Brian Hipszer and   
    Tatiyana V. Apanasovich and   
              Jeffrey I. Joseph   Estimation of nonlinear differential
                                  equation model for glucose-insulin
                                  dynamics in type I diabetic patients
                                  using generalized smoothing  . . . . . . 886--904
        Olga Vsevolozhskaya and   
             Mark Greenwood and   
                 Dmitri Holodov   Pairwise comparison of treatment levels
                                  in functional analysis of variance with
                                  application to erythrocyte hemolysis . . 905--925
                Gagan Sidhu and   
                    Brian Caffo   MONEYBaRL: Exploiting pitcher
                                  decision-making using Reinforcement
                                  Learning . . . . . . . . . . . . . . . . 926--955
         Nicholas J. Horton and   
               Daniell Toth and   
                   Polly Phipps   Adjusting models of ordered multinomial
                                  outcomes for nonignorable nonresponse in
                                  the occupational employment statistics
                                  survey . . . . . . . . . . . . . . . . . 956--973
          Joshua N. Sampson and   
               Bill Wheeler and   
                    Peng Li and   
                    Jianxin Shi   Leveraging local identity-by-descent
                                  increases the power of case/control GWAS
                                  with related individuals . . . . . . . . 974--998
                  Yize Zhao and   
                  Jian Kang and   
                     Tianwei Yu   A Bayesian nonparametric mixture model
                                  for selecting genes and gene subnetworks 999--1021
                Zhaonan Sun and   
              Thomas Kuczek and   
                         Yu Zhu   Statistical calibration of qRT-PCR,
                                  microarray and RNA-Seq gene expression
                                  data with measurement error models . . . 1022--1044
               Xuejing Wang and   
                    Bin Nan and   
                     Ji Zhu and   
                  Robert Koeppe   Regularized $3$D functional regression
                                  for brain image data via Haar wavelets   1045--1064
         Finbarr O'Sullivan and   
                  Mark Muzi and   
           David A. Mankoff and   
              Janet F. Eary and   
        Alexander M. Spence and   
               Kenneth A. Krohn   Voxel-level mapping of tracer kinetics
                                  in PET studies: A statistical approach
                                  emphasizing tissue life tables . . . . . 1065--1094
                    Tian Ge and   
   Nicole Müller-Lenke and   
          Kerstin Bendfeldt and   
          Thomas E. Nichols and   
             Timothy D. Johnson   Analysis of multiple sclerosis lesions
                                  via spatially varying coefficients . . . 1095--1118
                Zhigang Yao and   
                William F. Eddy   A statistical approach to the inverse
                                  problem in magnetoencephalography  . . . 1119--1144
      François Caron and   
               Yee Whye Teh and   
          Thomas Brendan Murphy   Bayesian nonparametric Plackett--Luce
                                  models for the analysis of preferences
                                  for college degree programmes  . . . . . 1145--1181
                   Jing Qin and   
            Tanya P. Garcia and   
                 Yanyuan Ma and   
              Ming-Xin Tang and   
               Karen Marder and   
                   Yuanjia Wang   Combining isotonic regression and EM
                                  algorithm to predict genetic risk under
                                  monotonicity constraint  . . . . . . . . 1182--1208
                Seongho Kim and   
                Ming Ouyang and   
               Jaesik Jeong and   
               Changyu Shen and   
                    Xiang Zhang   A new method of peak detection for
                                  analysis of comprehensive
                                  two-dimensional gas chromatography mass
                                  spectrometry data  . . . . . . . . . . . 1209--1231
            Jung-Ying Tzeng and   
                  Wenbin Lu and   
                   Fang-Chi Hsu   Gene-level pharmacogenetic analysis on
                                  survival outcomes using gene-trait
                                  similarity regression  . . . . . . . . . 1232--1255
 Ville A. Satopää and   
            Shane T. Jensen and   
         Barbara A. Mellers and   
          Philip E. Tetlock and   
                  Lyle H. Ungar   Probability aggregation in time-series:
                                  Dynamic hierarchical modeling of sparse
                                  expert beliefs . . . . . . . . . . . . . 1256--1280

Annals of Applied Statistics
Volume 8, Number 3, September, 2014

               Emily B. Fox and   
          Michael C. Hughes and   
           Erik B. Sudderth and   
              Michael I. Jordan   Joint modeling of multiple time series
                                  via the beta process with application to
                                  motion capture segmentation  . . . . . . 1281--1313
              Sarat C. Dass and   
             Chae Young Lim and   
                Tapabrata Maiti   A generalized mixed model framework for
                                  assessing fingerprint individuality in
                                  presence of varying image quality  . . . 1314--1340
             Daniel Cervone and   
           Natesh S. Pillai and   
               Debdeep Pati and   
               Ross Berbeco and   
               John Henry Lewis   A location-mixture autoregressive model
                                  for online forecasting of lung tumor
                                  motion . . . . . . . . . . . . . . . . . 1341--1371
               Morgan Kelly and   
   Cormac Ó Gráda   Change points and temporal dependence in
                                  reconstructions of annual temperature:
                                  Did Europe experience a Little Ice Age?  1372--1394
             Arman Sabbaghi and   
        Tirthankar Dasgupta and   
                Qiang Huang and   
                    Jizhe Zhang   Inference for deformation and
                                  interference in $3$D printing  . . . . . 1395--1415
             Abel Rodriguez and   
                David B. Dunson   Functional clustering in nested designs:
                                  Modeling variability in reproductive
                                  epidemiology studies . . . . . . . . . . 1416--1442
Veerabhadran Baladandayuthapani and   
             Rajesh Talluri and   
                    Yuan Ji and   
           Kevin R. Coombes and   
                  Yiling Lu and   
          Bryan T. Hennessy and   
          Michael A. Davies and   
                Bani K. Mallick   Bayesian sparse graphical models for
                                  classification with application to
                                  protein expression data  . . . . . . . . 1443--1468
              Bahman Afsari and   
      Ulisses M. Braga-Neto and   
                   Donald Geman   Rank discriminants for predicting
                                  phenotypes from RNA expression . . . . . 1469--1491
                 Sixia Chen and   
                  Jae-Kwang Kim   Two-phase sampling experiment for
                                  propensity score estimation in
                                  self-selected samples  . . . . . . . . . 1492--1515
          A. Paula Palacios and   
     J. Miguel Marín and   
         Emiliano J. Quinto and   
               Michael P. Wiper   Bayesian modeling of bacterial growth
                                  for multiple populations . . . . . . . . 1516--1537
           Nikolay Bliznyuk and   
    Christopher J. Paciorek and   
              Joel Schwartz and   
                    Brent Coull   Nonlinear predictive latent process
                                  models for integrating spatio-temporal
                                  exposure data from multiple sources  . . 1538--1560
                   Jie Peng and   
              Debashis Paul and   
         Hans-Georg Müller   Time-warped growth processes, with
                                  applications to the modeling of
                                  boom--bust cycles in house prices  . . . 1561--1582
               Tauhid Zaman and   
               Emily B. Fox and   
                Eric T. Bradlow   A Bayesian approach for predicting the
                                  popularity of tweets . . . . . . . . . . 1583--1611
            Sebastian Meyer and   
                  Leonhard Held   Power-law models for infectious disease
                                  spread . . . . . . . . . . . . . . . . . 1612--1639
             James V. Zidek and   
             Gavin Shaddick and   
              Carolyn G. Taylor   Reducing estimation bias in adaptively
                                  changing monitoring networks with
                                  preferential site selection  . . . . . . 1640--1670
              Rensheng Zhou and   
            Nicoleta Serban and   
                  Nagi Gebraeel   Degradation-based residual life
                                  prediction under different environments  1671--1689
         Raymond K. W. Wong and   
                Paul Baines and   
              Alexander Aue and   
           Thomas C. M. Lee and   
               Vinay L. Kashyap   Automatic estimation of flux
                                  distributions of astrophysical source
                                  populations  . . . . . . . . . . . . . . 1690--1712
                Zhisheng Ye and   
              Hon Keung Tony Ng   On analysis of incomplete field failure
                                  data . . . . . . . . . . . . . . . . . . 1713--1727
               Ander Wilson and   
             Ana G. Rappold and   
              Lucas M. Neas and   
                 Brian J. Reich   Modeling the effect of temperature on
                                  ozone-related mortality  . . . . . . . . 1728--1749
              Justin Bleich and   
              Adam Kapelner and   
           Edward I. George and   
                Shane T. Jensen   Variable selection for BART: An
                                  application to gene regulation . . . . . 1750--1781
                 Xinxin Zhu and   
          Kenneth P. Bowman and   
                 Marc G. Genton   Incorporating geostrophic wind
                                  information for improved space--time
                                  short-term wind speed forecasting  . . . 1782--1799
                  Jian Kang and   
          Thomas E. Nichols and   
               Tor D. Wager and   
             Timothy D. Johnson   A Bayesian hierarchical spatial point
                                  process model for multi-type
                                  neuroimaging meta-analysis . . . . . . . 1800--1824
             Takao Kumazawa and   
                 Yosihiko Ogata   Nonstationary ETAS models for
                                  nonstandard earthquakes  . . . . . . . . 1825--1852
            James D. Wilson and   
                  Simi Wang and   
             Peter J. Mucha and   
            Shankar Bhamidi and   
                Andrew B. Nobel   A testing based extraction algorithm for
                                  identifying significant communities in
                                  networks . . . . . . . . . . . . . . . . 1853--1891
             Chris J. Oates and   
                Jim Korkola and   
                Joe W. Gray and   
                 Sach Mukherjee   Joint estimation of multiple related
                                  biological networks  . . . . . . . . . . 1892--1919

Annals of Applied Statistics
Volume 8, Number 4, December, 2014

               Susan M. Paddock   Editorial: Spatial accessibility of
                                  pediatric primary healthcare:
                                  Measurement and inference  . . . . . . . 1921--1921
             Mallory Nobles and   
            Nicoleta Serban and   
                    Julie Swann   Spatial accessibility of pediatric
                                  primary healthcare: Measurement and
                                  inference  . . . . . . . . . . . . . . . 1922--1946
              Laura A. Hatfield   Discussion of ``Spatial accessibility of
                                  pediatric primary healthcare:
                                  Measurement and inference''  . . . . . . 1947--1951
             Amelia M. Haviland   Discussion of ``Spatial accessibility of
                                  pediatric primary healthcare:
                                  Measurement and inference''  . . . . . . 1952--1955
                Lance A. Waller   Discussion of ``Spatial accessibility of
                                  pediatric primary healthcare:
                                  Measurement and inference''  . . . . . . 1956--1960
             Mallory Nobles and   
            Nicoleta Serban and   
                    Julie Swann   Rejoinder: ``Spatial accessibility of
                                  pediatric primary healthcare:
                                  Measurement and inference''  . . . . . . 1961--1965
               Luis Barboza and   
                      Bo Li and   
          Martin P. Tingley and   
               Frederi G. Viens   Reconstructing past temperatures from
                                  natural proxies and estimated climate
                                  forcings using short- and long-memory
                                  models . . . . . . . . . . . . . . . . . 1966--2001
           Colin B. Fogarty and   
                 Dylan S. Small   Equivalence testing for functional data
                                  with an application to comparing
                                  pulmonary function devices . . . . . . . 2002--2026
             Michael Messer and   
          Marietta Kirchner and   
            Julia Schiemann and   
              Jochen Roeper and   
            Ralph Neininger and   
                 Gaby Schneider   A multiple filter test for the detection
                                  of rate changes in renewal processes
                                  with varying variance  . . . . . . . . . 2027--2067
             Abel Rodriguez and   
             Scott C. Schmidler   Bayesian protein structure alignment . . 2068--2095
 José R. Zubizarreta and   
             Dylan S. Small and   
              Paul R. Rosenbaum   Isolation in the construction of natural
                                  experiments  . . . . . . . . . . . . . . 2096--2121
            Leontine Alkema and   
                    Jin Rou New   Global estimation of child mortality
                                  using a Bayesian B-spline bias-reduction
                                  model  . . . . . . . . . . . . . . . . . 2122--2149
                Shaowu Tang and   
                  Ying Ding and   
            Etienne Sibille and   
           Jeffrey S. Mogil and   
       William R. Lariviere and   
                George C. Tseng   Imputation of truncated $p$-values for
                                  meta-analysis methods and its genomic
                                  application  . . . . . . . . . . . . . . 2150--2174
           Vadim Zipunnikov and   
               Sonja Greven and   
              Haochang Shou and   
             Brian S. Caffo and   
            Daniel S. Reich and   
         Ciprian M. Crainiceanu   Longitudinal high-dimensional principal
                                  components analysis with application to
                                  diffusion tensor imaging of multiple
                                  sclerosis  . . . . . . . . . . . . . . . 2175--2202
  Matthias Steinrücken and   
              Anand Bhaskar and   
                    Yun S. Song   A novel spectral method for inferring
                                  general diploid selection from time
                                  series genetic data  . . . . . . . . . . 2203--2222
         Theodoros Economou and   
        David B. Stephenson and   
        Christopher A. T. Ferro   Spatio-temporal modelling of extreme
                                  storms . . . . . . . . . . . . . . . . . 2223--2246
                Andrew Bray and   
                    Ka Wong and   
        Christopher D. Barr and   
       Frederic Paik Schoenberg   Voronoi residual analysis of spatial
                                  point process models with applications
                                  to California earthquake forecasts . . . 2247--2267
        Daniel Manrique-Vallier   Longitudinal Mixed Membership trajectory
                                  models for disability survey data  . . . 2268--2291
                  Jiahan Li and   
                  Wei Zhong and   
                   Runze Li and   
                    Rongling Wu   A fast algorithm for detecting
                                  gene--gene interactions in genome-wide
                                  association studies  . . . . . . . . . . 2292--2318
             Elasma Milanzi and   
               Ariel Alonso and   
           Christophe Buyck and   
          Geert Molenberghs and   
                    Luc Bijnens   A permutational-splitting sample
                                  procedure to quantify expert opinion on
                                  clusters of chemical compounds using
                                  high-dimensional data  . . . . . . . . . 2319--2335
               Zhiwei Zhang and   
                    Lei Nie and   
               Guoxing Soon and   
                       Aiyi Liu   The use of covariates and random effects
                                  in evaluating predictive biomarkers
                                  under a potential outcome framework  . . 2336--2355
          Cecilia A. Cotton and   
            Patrick J. Heagerty   Evaluating epoetin dosing strategies
                                  using observational longitudinal data    2356--2377
           Anne M. Presanis and   
          Richard G. Pebody and   
            Paul J. Birrell and   
            Brian D. M. Tom and   
             Helen K. Green and   
             Hayley Durnall and   
            Douglas Fleming and   
             Daniela De Angelis   Synthesising evidence to estimate
                                  pandemic (2009) A/H1N1 influenza
                                  severity in 2009--2011 . . . . . . . . . 2378--2403
               Mauricio Sadinle   Detecting duplicates in a homicide
                                  registry using a Bayesian partitioning
                                  approach . . . . . . . . . . . . . . . . 2404--2434
               Yingying Fan and   
              Natasha Foutz and   
            Gareth M. James and   
                  Wolfgang Jank   Functional response additive model
                                  estimation with online virtual stock
                                  markets  . . . . . . . . . . . . . . . . 2435--2460
        Brett T. McClintock and   
          Larissa L. Bailey and   
            Brian P. Dreher and   
                William A. Link   Probit models for capture--recapture
                                  data subject to imperfect detection,
                                  individual heterogeneity and
                                  misidentification  . . . . . . . . . . . 2461--2484
          Andrea Mercatanti and   
                         Fan Li   Do debit cards increase household
                                  spending? Evidence from a semiparametric
                                  causal analysis of a survey  . . . . . . 2485--2508
               Casey Olives and   
            Lianne Sheppard and   
       Johan Lindström and   
            Paul D. Sampson and   
            Joel D. Kaufman and   
                 Adam A. Szpiro   Reduced-rank spatio-temporal modeling of
                                  air pollution concentrations in the
                                  Multi-Ethnic Study of Atherosclerosis
                                  and Air Pollution  . . . . . . . . . . . 2509--2537
            K. S. McGarrity and   
                 J. Sietsma and   
                   G. Jongbloed   Nonparametric inference in a
                                  stereological model with oriented
                                  cylinders applied to dual phase steel    2538--2566
                 Georg M. Goerg   Usage of the Lambert $W$ function in
                                  statistics . . . . . . . . . . . . . . . 2567--2567


Annals of Applied Statistics
Volume 9, Number 1, March, 2015

                  Guohui Wu and   
             Scott H. Holan and   
           Charles H. Nilon and   
           Christopher K. Wikle   Bayesian binomial mixture models for
                                  estimating abundance in ecological
                                  monitoring studies . . . . . . . . . . . 1--26
                 Jacob Bien and   
                 Noah Simon and   
              Robert Tibshirani   Convex hierarchical testing of
                                  interactions . . . . . . . . . . . . . . 27--42
               Haiming Zhou and   
             Timothy Hanson and   
             Alejandro Jara and   
                   Jiajia Zhang   Modeling county level breast cancer
                                  survival data using a covariate-adjusted
                                  frailty proportional hazards model . . . 43--68
             Jabed H. Tomal and   
           William J. Welch and   
                 Ruben H. Zamar   Ensembling classification models based
                                  on phalanxes of variables with
                                  applications in drug discovery . . . . . 69--93
           Alexander Franks and   
              Andrew Miller and   
                 Luke Bornn and   
                Kirk Goldsberry   Characterizing the spatial structure of
                                  defensive skill in professional
                                  basketball . . . . . . . . . . . . . . . 94--121
            \cSeyda Ertekin and   
              Cynthia Rudin and   
             Tyler H. McCormick   Reactive point processes: A new approach
                                  to predicting power failures in
                                  underground electrical systems . . . . . 122--144
           Ephraim M. Hanks and   
            Mevin B. Hooten and   
               Mat W. Alldredge   Continuous-time discrete-space models
                                  for animal movement  . . . . . . . . . . 145--165
               Yaonan Zhang and   
           Eric D. Kolaczyk and   
               Bruce D. Spencer   Estimating network degree distributions
                                  under sampling: An inverse problem, with
                                  applications to monitoring social media
                                  networks . . . . . . . . . . . . . . . . 166--199
             Paul Fearnhead and   
                 Shoukai Yu and   
              Patrick Biggs and   
            Barbara Holland and   
                   Nigel French   Estimating the relative rate of
                                  recombination to mutation in bacteria
                                  from single-locus variants using
                                  composite likelihood methods . . . . . . 200--224
                Zhishi Wang and   
                 Qiuling He and   
                Bret Larget and   
              Michael A. Newton   A multi-functional analyzer uses
                                  parameter constraints to improve the
                                  efficiency of model-based gene-set
                                  analysis . . . . . . . . . . . . . . . . 225--246
           Kay H. Brodersen and   
           Fabian Gallusser and   
                Jim Koehler and   
               Nicolas Remy and   
                Steven L. Scott   Inferring causal impact using Bayesian
                                  structural time-series models  . . . . . 247--274
             Kara A. Fulton and   
                Danping Liu and   
           Denise L. Haynie and   
                 Paul S. Albert   Mixed model and estimating equation
                                  approaches for zero inflation in
                                  clustered binary response data with
                                  application to a dating violence study   275--299
          Y. X. Rachel Wang and   
                 Keni Jiang and   
           Lewis J. Feldman and   
            Peter J. Bickel and   
                   Haiyan Huang   Inferring gene--gene interactions and
                                  functional modules using sparse
                                  canonical correlation analysis . . . . . 300--323
          Dominique Guillot and   
            Bala Rajaratnam and   
              Julien Emile-Geay   Statistical paleoclimate reconstructions
                                  via Markov random fields . . . . . . . . 324--352
                   Sai Xiao and   
          Athanasios Kottas and   
             Bruno Sansó   Modeling for seasonal marked point
                                  processes: An analysis of evolving
                                  hurricane occurrences  . . . . . . . . . 353--382
             Cecile Low-Kam and   
          Donatello Telesca and   
                 Zhaoxia Ji and   
              Haiyuan Zhang and   
                   Tian Xia and   
            Jeffrey I. Zink and   
                   Andre E. Nel   A Bayesian regression tree approach to
                                  identify the effect of nanoparticles'
                                  properties on toxicity profiles  . . . . 383--401
             Lorenzo Trippa and   
               Levi Waldron and   
         Curtis Huttenhower and   
            Giovanni Parmigiani   Bayesian nonparametric cross-study
                                  validation of prediction methods . . . . 402--428
               Zhixiang Lin and   
         Stephan J. Sanders and   
                Mingfeng Li and   
               Nenad Sestan and   
           Matthew W. State and   
                    Hongyu Zhao   A Markov random field-based approach to
                                  characterizing human brain development
                                  using spatial--temporal transcriptome
                                  data . . . . . . . . . . . . . . . . . . 429--451
              Hongwei Shang and   
                    Jun Yan and   
                   Xuebin Zhang   A two-step approach to model
                                  precipitation extremes in California
                                  based on max-stable and marginal point
                                  processes  . . . . . . . . . . . . . . . 452--473
             Martin L. Hazelton   Network tomography for integer-valued
                                  traffic  . . . . . . . . . . . . . . . . 474--506
        Simon E. F. Spencer and   
             Steven M. Hill and   
                 Sach Mukherjee   Inferring network structure from
                                  interventional time-course experiments   507--524
              Cinzia Carota and   
         Maurizio Filippone and   
          Roberto Leombruni and   
               Silvia Polettini   Bayesian nonparametric disclosure risk
                                  estimation via mixed effects log-linear
                                  models . . . . . . . . . . . . . . . . . 525--546

Annals of Applied Statistics
Volume 9, Number 2, June, 2015

               Niamh Cahill and   
             Andrew C. Kemp and   
         Benjamin P. Horton and   
              Andrew C. Parnell   Modeling sea-level change using
                                  errors-in-variables integrated Gaussian
                                  processes  . . . . . . . . . . . . . . . 547--571
        Forrest W. Crawford and   
            Robert E. Weiss and   
                Marc A. Suchard   Sex, lies and self-reported counts:
                                  Bayesian mixture models for heaping in
                                  longitudinal count data via birth-death
                                  processes  . . . . . . . . . . . . . . . 572--596
               Wenfei Zhang and   
                       Ying Wei   Regression based principal component
                                  analysis for sparse functional data with
                                  applications to screening growth paths   597--620
                  Juhee Lee and   
          Peter Müller and   
         Kamalakar Gulukota and   
                        Yuan Ji   A Bayesian feature allocation model for
                                  tumor heterogeneity  . . . . . . . . . . 621--639
                  Jiahan Li and   
                 Zhong Wang and   
                   Runze Li and   
                    Rongling Wu   Bayesian group Lasso for nonparametric
                                  varying-coefficient models with
                                  application to functional genome-wide
                                  association studies  . . . . . . . . . . 640--664
               Heejung Shim and   
               Matthew Stephens   Wavelet-based genetic association
                                  analysis of functional phenotypes
                                  arising from high-throughput sequencing
                                  assays . . . . . . . . . . . . . . . . . 665--686
                     Fan Li and   
             Tingting Zhang and   
                Quanli Wang and   
         Marlen Z. Gonzalez and   
             Erin L. Maresh and   
                  James A. Coan   Spatial Bayesian variable selection and
                                  grouping for high-dimensional
                                  scalar-on-image regression . . . . . . . 687--713
               Xiangdong Gu and   
                Yunsheng Ma and   
           Raji Balasubramanian   Semiparametric time to event models in
                                  the presence of error-prone,
                                  self-reported outcomes --- With
                                  application to the Women's Health
                                  Initiative . . . . . . . . . . . . . . . 714--730
    Jonathan S. Schildcrout and   
            Paul J. Rathouz and   
           Leila R. Zelnick and   
           Shawn P. Garbett and   
            Patrick J. Heagerty   Biased sampling designs to improve
                                  research efficiency: Factors influencing
                                  pulmonary function over time in children
                                  with asthma  . . . . . . . . . . . . . . 731--753
               Giles Hooker and   
              Stephen P. Ellner   Goodness of fit in nonlinear dynamics:
                                  Misspecified rates or misspecified
                                  states?  . . . . . . . . . . . . . . . . 754--776
           Laura Anderlucci and   
                  Cinzia Viroli   Covariance pattern mixture models for
                                  the analysis of multivariate
                                  heterogeneous longitudinal data  . . . . 777--800
               Stefan Wager and   
          Alexander Blocker and   
                   Niall Cardin   Weakly supervised clustering: Learning
                                  fine-grained signals from coarse labels  801--820
                   Jian Guo and   
                  Jie Cheng and   
           Elizaveta Levina and   
         George Michailidis and   
                         Ji Zhu   Estimating heterogeneous graphical
                                  models for discrete data with an
                                  application to roll call voting  . . . . 821--848
            John C. Jackson and   
             Paul S. Albert and   
                   Zhiwei Zhang   A two-state mixed hidden Markov model
                                  for risky teenage driving behavior . . . 849--865
          Francis K. C. Hui and   
            David I. Warton and   
                Scott D. Foster   Multi-species distribution modeling
                                  using penalized mixture of regressions   866--882
               Yicheng Kang and   
              Xiaodong Gong and   
                   Jiti Gao and   
                     Peihua Qiu   Jump detection in generalized
                                  error-in-variables regression with an
                                  application to Australian health tax
                                  policies . . . . . . . . . . . . . . . . 883--900
                  Shiqi Cui and   
              Subharup Guha and   
       Marco A. R. Ferreira and   
               Allison N. Tegge   hmmSeq: A hidden Markov model for
                                  detecting differentially expressed genes
                                  from RNA-seq data  . . . . . . . . . . . 901--925
         Vasileios Maroulas and   
         Andreas Nebenführ   Tracking rapid intracellular movements:
                                  A Bayesian random set approach . . . . . 926--949
                     Jie Hu and   
             Zhongying Zhao and   
  Hari Krishna Yalamanchili and   
                Junwen Wang and   
                   Kenny Ye and   
                    Xiaodan Fan   Bayesian detection of embryonic gene
                                  expression onset in \em C. elegans . . . 950--968
          Gabriela B. Cybis and   
        Janet S. Sinsheimer and   
             Trevor Bedford and   
           Alison E. Mather and   
             Philippe Lemey and   
                Marc A. Suchard   Assessing phenotypic correlation through
                                  the multivariate phylogenetic latent
                                  liability model  . . . . . . . . . . . . 969--991
                   Makram Talih   Examining socioeconomic health
                                  disparities using a rank-dependent Rényi
                                  index  . . . . . . . . . . . . . . . . . 992--1023
                Nadja Klein and   
               Thomas Kneib and   
                Stefan Lang and   
                 Alexander Sohn   Bayesian structured additive
                                  distributional regression with an
                                  application to regional income
                                  inequality in Germany  . . . . . . . . . 1024--1052
                Sandra Safo and   
                  Xiao Song and   
                Kevin K. Dobbin   Sample size determination for training
                                  cancer classifiers from microarray and
                                  RNA-seq data . . . . . . . . . . . . . . 1053--1075
            Philip T. Reiss and   
                    Lan Huo and   
                Yihong Zhao and   
                Clare Kelly and   
                  R. Todd Ogden   Wavelet-domain regression and predictive
                                  inference in psychiatric neuroimaging    1076--1101

Annals of Applied Statistics
Volume 9, Number 3, September, 2015

         Ma\lgorzata Bogdan and   
         Ewout van den Berg and   
             Chiara Sabatti and   
                  Weijie Su and   
           Emmanuel J. Cand\`es   SLOPE-Adaptive variable selection via
                                  convex optimization  . . . . . . . . . . 1103--1140
          Robert B. Gramacy and   
              Derek Bingham and   
        James Paul Holloway and   
       Michael J. Grosskopf and   
          Carolyn C. Kuranz and   
               Erica Rutter and   
              Matt Trantham and   
                  R. Paul Drake   Calibrating a large computer experiment
                                  simulating radiative shock hydrodynamics 1141--1168
                  Peter D. Hoff   Multilinear tensor regression for
                                  longitudinal relational data . . . . . . 1169--1193
       Lasse Holmström and   
              Liisa Ilvonen and   
          Heikki Seppä and   
                     Siim Veski   A Bayesian spatiotemporal model for
                                  reconstructing climate from multiple
                                  pollen records . . . . . . . . . . . . . 1194--1225
              Luke B. Smith and   
         Montserrat Fuentes and   
        Penny Gordon-Larsen and   
                 Brian J. Reich   Quantile regression for mixed models
                                  with an application to examine blood
                                  pressure trends in China . . . . . . . . 1226--1246
            Rachael Maltiel and   
          Adrian E. Raftery and   
         Tyler H. McCormick and   
                Aaron J. Baraff   Estimating population size using the
                                  network scale up method  . . . . . . . . 1247--1277
        Sergiusz Wesolowski and   
        Robert J. Contreras and   
                         Wei Wu   A new framework for Euclidean summary
                                  statistics in the neural spike train
                                  space  . . . . . . . . . . . . . . . . . 1278--1297
            Fabian E. Bachl and   
              Alex Lenkoski and   
 Thordis L. Thorarinsdottir and   
             Christoph S. Garbe   Bayesian motion estimation for dust
                                  aerosols . . . . . . . . . . . . . . . . 1298--1327
          Michael Scheuerer and   
              David Möller   Probabilistic wind speed forecasting on
                                  a grid based on ensemble model output
                                  statistics . . . . . . . . . . . . . . . 1328--1349
            Benjamin Letham and   
              Cynthia Rudin and   
         Tyler H. McCormick and   
                  David Madigan   Interpretable classifiers using rules
                                  and Bayesian analysis: Building a better
                                  stroke prediction model  . . . . . . . . 1350--1371
       Alexandra M. Schmidt and   
  Marco A. Rodríguez and   
         Estelina S. Capistrano   Population counts along elliptical
                                  habitat contours: Hierarchical modeling
                                  using Poisson-lognormal mixtures with
                                  nonstationary spatial structure  . . . . 1372--1393
                     Matt Taddy   Distributed multinomial regression . . . 1394--1414
                Jukka Ranta and   
           Roland Lindqvist and   
             Ingrid Hansson and   
            Pirkko Tuominen and   
                  Maarten Nauta   A Bayesian approach to the evaluation of
                                  risk-based microbiological criteria for
                                  Campylobacter in broiler meat  . . . . . 1415--1432
           Estela Bee Dagum and   
             Silvia Bianconcini   A new set of asymmetric filters for
                                  tracking the short-term trend in
                                  real-time  . . . . . . . . . . . . . . . 1433--1458
            P. Richard Hahn and   
           Indranil Goswami and   
                   Carl F. Mela   A Bayesian hierarchical model for
                                  inferring player strategy types in a
                                  number guessing game . . . . . . . . . . 1459--1483
             J. R. Lockwood and   
       Terrance D. Savitsky and   
            Daniel F. McCaffrey   Inferring constructs of effective
                                  teaching from classroom observations: An
                                  application of Bayesian exploratory
                                  factor analysis without restrictions . . 1484--1509
             D. E. Fishkind and   
                V. Lyzinski and   
                     H. Pao and   
                    L. Chen and   
                   C. E. Priebe   Vertex nomination schemes for membership
                                  prediction . . . . . . . . . . . . . . . 1510--1532
           Irina Ostrovnaya and   
      Venkatraman E. Seshan and   
                  Colin B. Begg   Using somatic mutation data to test
                                  tumors for clonal relatedness  . . . . . 1533--1548
           Thomas A. Murray and   
             Brian P. Hobbs and   
              Bradley P. Carlin   Combining nonexchangeable functional or
                                  survival data sources in oncology using
                                  generalized mixture commensurate priors  1549--1570
                     Li Liu and   
                   Jing Lei and   
                 Kathryn Roeder   Network assisted analysis to reveal the
                                  genetic basis of autism  . . . . . . . . 1571--1600
                Zhao-Hua Lu and   
               Sy-Miin Chow and   
            Andrew Sherwood and   
                     Hongtu Zhu   Bayesian analysis of ambulatory blood
                                  pressure dynamics with application to
                                  irregularly spaced sparse data . . . . . 1601--1620
                     Jun Ye and   
                   Yehua Li and   
                   Yongtao Guan   Joint modeling of longitudinal drug
                                  using pattern and time to first relapse
                                  in cocaine dependence treatment data . . 1621--1642
            Thierry Chekouo and   
            Alejandro Murua and   
         Wolfgang Raffelsberger   The Gibbs-plaid biclustering model . . . 1643--1670
             Mikael Kuusela and   
            Victor M. Panaretos   Statistical unfolding of elementary
                                  particle spectra: Empirical Bayes
                                  estimation and bias-corrected
                                  uncertainty quantification . . . . . . . 1671--1705
              David Rossell and   
Camille Stephan-Otto Attolini and   
              Manuel Kroiss and   
            Almond Stöcker   Corrigendum: Quantifying alternative
                                  splicing from paired-end RNA-seq data    1706--1707

Annals of Applied Statistics
Volume 9, Number 4, December, 2015

               Scott Powers and   
              Trevor Hastie and   
              Robert Tibshirani   Customized training with an application
                                  to mass spectrometric imaging of cancer
                                  tissue . . . . . . . . . . . . . . . . . 1709--1725
          Charles Bouveyron and   
         Etienne Côme and   
                 Julien Jacques   The discriminative functional mixture
                                  model for a comparative analysis of bike
                                  sharing systems  . . . . . . . . . . . . 1726--1760
        Jonathan R. Bradley and   
             Scott H. Holan and   
           Christopher K. Wikle   Multivariate spatio-temporal models for
                                  high-dimensional areal data with
                                  application to Longitudinal
                                  Employer--Household Dynamics . . . . . . 1761--1791
                Giacomo Zanella   Random partition models and
                                  complementary clustering of Anglo-Saxon
                                  place-names  . . . . . . . . . . . . . . 1792--1822
           Ramin Moghaddass and   
                  Cynthia Rudin   The latent state hazard model, with
                                  application to wind turbine reliability  1823--1863
            Nicholas Polson and   
                  Vadim Sokolov   Bayesian analysis of traffic flow on
                                  interstate I-55: The LWR model . . . . . 1864--1888
            Laina D. Mercer and   
              Jon Wakefield and   
            Athena Pantazis and   
        Angelina M. Lutambi and   
           Honorati Masanja and   
                   Samuel Clark   Space-time smoothing of complex survey
                                  data: Small area estimation for child
                                  mortality  . . . . . . . . . . . . . . . 1889--1905
                     Fan Li and   
          Alessandra Mattei and   
                Fabrizia Mealli   Evaluating the causal effect of
                                  university grants on student dropout:
                                  Evidence from a regression discontinuity
                                  design using principal stratification    1906--1931
             T. R. Fanshawe and   
              C. M. Chapman and   
                       T. Crick   Lymphangiogenesis and carcinoma in the
                                  uterine cervix: Joint and hierarchical
                                  models for random cluster sizes and
                                  continuous outcomes  . . . . . . . . . . 1932--1949
               Shawn Mankad and   
             George Michailidis   Analysis of multiview legislative
                                  networks with structured matrix
                                  factorization: Does Twitter influence
                                  translate to the real world? . . . . . . 1950--1972
        Lyron J. Winderbaum and   
                  Inge Koch and   
       Ove J. R. Gustafsson and   
             Stephan Meding and   
                 Peter Hoffmann   Feature extraction for proteomics
                                  imaging mass spectrometry data . . . . . 1973--1996
                Leila Wehbe and   
             Aaditya Ramdas and   
         Rebecca C. Steorts and   
          Cosma Rohilla Shalizi   Regularized brain reading with shrinkage
                                  and smoothing  . . . . . . . . . . . . . 1997--2022
               Peiman Asadi and   
         Anthony C. Davison and   
              Sebastian Engelke   Extremes on river networks . . . . . . . 2023--2050
       Milan Stehlík and   
                Philipp Hermann   Letter to the Editor . . . . . . . . . . 2051
              Shengtong Han and   
              Hongmei Zhang and   
       Gabrielle A. Lockett and   
          Nandini Mukherjee and   
           John W. Holloway and   
               Wilfried Karmaus   Identifying heterogeneous
                                  transgenerational DNA methylation sites
                                  via clustering in beta regression  . . . 2052--2072
               Renato Guseo and   
               Cinzia Mortarino   Modeling competition between two
                                  pharmaceutical drugs using innovation
                                  diffusion models . . . . . . . . . . . . 2073--2089
                  Jie Xiong and   
              D. P. Dittmer and   
                   J. S. Marron   ``Virus hunting'' using radial distance
                                  weighted discrimination  . . . . . . . . 2090--2109
                   Ying Sun and   
               Michael L. Stein   A stochastic space-time model for
                                  intermittent precipitation occurrences   2110--2132
       Lynne Steuerle Schofield   Correcting for measurement error in
                                  latent variables used as predictors  . . 2133--2152
                 Eunjee Lee and   
                 Hongtu Zhu and   
                 Dehan Kong and   
                 Yalin Wang and   
  Kelly Sullivan Giovanello and   
          Joseph G. Ibrahim and   
for the Alzheimer's Disease Neuroimaging Initiative   BFLCRM: A Bayesian functional linear Cox
                                  regression model for predicting time to
                                  conversion to Alzheimer's disease  . . . 2153--2178
          Eugen Pircalabelu and   
            Gerda Claeskens and   
               Sara Jahfari and   
             Lourens J. Waldorp   A focused information criterion for
                                  graphical models in fMRI connectivity
                                  with high-dimensional data . . . . . . . 2179--2214
         Daniel Scharfstein and   
           Andrea Rotnitzky and   
              Maria Abraham and   
            Aidan McDermott and   
           Richard Chaisson and   
                Lawrence Geiter   On the analysis of tuberculosis studies
                                  with intermittent missing sputum data    2215--2236
           Rebecca Andridge and   
       Katherine Jenny Thompson   Assessing nonresponse bias in a business
                                  survey: Proxy pattern--mixture analysis
                                  for skewed data  . . . . . . . . . . . . 2237--2265
                 Ronny Luss and   
             Saharon Rosset and   
                    Moni Shahar   Correction: Efficient regularized
                                  isotonic regression with application to
                                  gene-gene interaction search . . . . . . 2266--2267


Annals of Applied Statistics
Volume 10, Number 1, March, 2016

            Linda S. L. Tan and   
               Aik Hui Chan and   
                     Tian Zheng   Topic-adjusted visibility metric for
                                  scientific articles  . . . . . . . . . . 1--31
                  Ailin Fan and   
                  Wenbin Lu and   
                       Rui Song   Sequential advantage selection for
                                  optimal treatment regime . . . . . . . . 32--53
               Dmitry Kobak and   
            Sergey Shpilkin and   
         Maxim S. Pshenichnikov   Integer percentages as electoral
                                  falsification fingerprints . . . . . . . 54--73
          Benjamin A. Shaby and   
             Brian J. Reich and   
              Daniel Cooley and   
                Cari G. Kaufman   A Markov-switching model for heat waves  74--93
        Yannick Vandendijck and   
              Christel Faes and   
                      Niel Hens   Prevalence and trend estimation from
                                  observational data with highly variable
                                  post-stratification weights  . . . . . . 94--117
                  Yajuan Si and   
           Jerome P. Reiter and   
           D. Sunshine Hillygus   Bayesian latent pattern mixture models
                                  for handling attrition in panel studies
                                  with refreshment samples . . . . . . . . 118--143
                    Ke Deng and   
                    Yang Li and   
                Weiping Zhu and   
                     Jun S. Liu   Fast parameter estimation in loss
                                  tomography for networks of general
                                  topology . . . . . . . . . . . . . . . . 144--164
              James P. Long and   
                Eric C. Chi and   
            Richard G. Baraniuk   Estimating a common period for a set of
                                  irregularly sampled functions with
                                  applications to periodic variable star
                                  data . . . . . . . . . . . . . . . . . . 165--197
               Paul Bendich and   
               J. S. Marron and   
                Ezra Miller and   
               Alex Pieloch and   
                   Sean Skwerer   Persistent homology analysis of brain
                                  artery trees . . . . . . . . . . . . . . 198--218
             Ching-Fan Sheu and   
    Émeline Perthame and   
              Yuh-shiow Lee and   
                  David Causeur   Accounting for time dependence in
                                  large-scale multiple testing of
                                  event-related potential data . . . . . . 219--245
            Simon J. Bonner and   
       Matthew R. Schofield and   
               Patrik Noren and   
                Steven J. Price   Extending the latent multinomial model
                                  with complex error processes and dynamic
                                  Markov bases . . . . . . . . . . . . . . 246--263
                  Ruth King and   
        Brett T. McClintock and   
              Darren Kidney and   
                 David Borchers   Capture-recapture abundance estimation
                                  using a semi-complete data likelihood
                                  approach . . . . . . . . . . . . . . . . 264--285
                    Le Wang and   
             Pamela A. Shaw and   
        Hansie M. Mathelier and   
          Stephen E. Kimmel and   
                Benjamin French   Evaluating risk-prediction models using
                                  data from electronic health records  . . 286--304
            Daniel McCarthy and   
                Shane T. Jensen   Power-weighted densities for time series
                                  data . . . . . . . . . . . . . . . . . . 305--334
             Hyunseung Kang and   
              Benno Kreuels and   
            Jürgen May and   
                 Dylan S. Small   Full matching approach to instrumental
                                  variables estimation with application to
                                  the effect of malaria on stunting  . . . 335--364
                Sharad Goel and   
              Justin M. Rao and   
                    Ravi Shroff   Precinct or prejudice? Understanding
                                  racial disparities in New York City's
                                  stop-and-frisk policy  . . . . . . . . . 365--394
             Colin J. Worby and   
          Philip D. O'Neill and   
          Theodore Kypraios and   
          Julie V. Robotham and   
         Daniela De Angelis and   
    Edward J. P. Cartwright and   
          Sharon J. Peacock and   
                  Ben S. Cooper   Reconstructing transmission trees for
                                  communicable diseases using densely
                                  sampled genetic data . . . . . . . . . . 395--417
                   Ying Liu and   
               Yuanjia Wang and   
                  Yang Feng and   
                Melanie M. Wall   Variable selection and prediction with
                                  incomplete high-dimensional data . . . . 418--450
             Marissa Isidro and   
            Stephen Haslett and   
                    Geoff Jones   Extended Structure Preserving Estimation
                                  (ESPREE) for updating small area
                                  estimates of poverty . . . . . . . . . . 451--476
             Andrew Poppick and   
         David J. McInerney and   
         Elisabeth J. Moyer and   
               Michael L. Stein   Temperatures in transient climates:
                                  Improved methods for simulations with
                                  evolving temporal covariances  . . . . . 477--505
               Mengjie Chen and   
                 Haifan Lin and   
                    Hongyu Zhao   Change point analysis of histone
                                  modifications reveals epigenetic blocks
                                  linking to physical domains  . . . . . . 506--526
        Brandon George, Jr. and   
              Thomas Denney and   
             Himanshu Gupta and   
          Louis Dell'Italia and   
                Inmaculada Aban   Applying a spatiotemporal model for
                                  longitudinal cardiac imaging data  . . . 527--548

Annals of Applied Statistics
Volume 10, Number 2, June, 2016

         Anna-Kaisa Ylitalo and   
      Aila Särkkä and   
                  Peter Guttorp   What we look at in paintings: A
                                  comparison between experienced and
                                  inexperienced art viewers  . . . . . . . 549--574
           Amanda A. Koepke and   
        Ira M. Longini, Jr. and   
      M. Elizabeth Halloran and   
              Jon Wakefield and   
              Vladimir N. Minin   Predictive modeling of cholera outbreaks
                                  in Bangladesh  . . . . . . . . . . . . . 575--595
               Wanghuan Chu and   
                   Runze Li and   
               Matthew Reimherr   Feature screening for time-varying
                                  coefficient models with
                                  ultrahigh-dimensional longitudinal data  596--617
              Kwang Woo Ahn and   
                 Brent R. Logan   Pseudo-value approach for conditional
                                  quantile residual lifetime analysis for
                                  clustered survival and competing risks
                                  data with applications to bone marrow
                                  transplant data  . . . . . . . . . . . . 618--637
               Linlin Zhang and   
           Michele Guindani and   
          Francesco Versace and   
       Jeffrey M. Engelmann and   
                Marina Vannucci   A spatiotemporal nonparametric Bayesian
                                  model of multi-subject fMRI data . . . . 638--666
          Drausin F. Wulsin and   
            Shane T. Jensen and   
                     Brian Litt   Nonparametric multi-level clustering of
                                  human epilepsy seizures  . . . . . . . . 667--689
                 Sean Ruddy and   
              Marla Johnson and   
               Elizabeth Purdom   Shrinkage of dispersion parameters in
                                  the binomial family, with application to
                                  differential exon skipping . . . . . . . 690--725
             Nancy R. Zhang and   
             Benjamin Yakir and   
                  Li C. Xia and   
                 David Siegmund   Scan statistics on Poisson random fields
                                  with applications in genomics  . . . . . 726--755
                   Xiao Liu and   
               Kyongmin Yeo and   
            Youngdeok Hwang and   
             Jitendra Singh and   
              Jayant Kalagnanam   A statistical modeling approach for air
                                  quality data based on physical
                                  dispersion processes and its application
                                  to ozone modeling  . . . . . . . . . . . 756--785
          Laurent Briollais and   
               Adrian Dobra and   
                 Jinnan Liu and   
           Matt Friedlander and   
              Hilmi Ozcelik and   
         Hél\`ene Massam   A Bayesian graphical model for
                                  genome-wide association studies (GWAS)   786--811
               Paolo Zanini and   
               Haipeng Shen and   
                   Young Truong   Understanding resident mobility in Milan
                                  through independent component analysis
                                  of Telecom Italia mobile usage data  . . 812--833
                   Peng Shi and   
              Xiaoping Feng and   
          Jean-Philippe Boucher   Multilevel modeling of insurance claims
                                  using copulas  . . . . . . . . . . . . . 834--863
            Philip J. Brown and   
               Martin S. Ridout   Level-screening designs for factors with
                                  many levels  . . . . . . . . . . . . . . 864--883
               Ick Hoon Jin and   
                  Ying Yuan and   
         Dipankar Bandyopadhyay   A Bayesian hierarchical spatial model
                                  for dental caries assessment using
                                  non-Gaussian Markov random fields  . . . 884--905
              Stijn Jaspers and   
           Philippe Lambert and   
                     Marc Aerts   A Bayesian approach to the
                                  semiparametric estimation of a minimum
                                  inhibitory concentration distribution    906--924
            Maria Bolsinova and   
               Gunter Maris and   
               Herbert Hoijtink   Unmixing Rasch scales: How to score an
                                  educational test . . . . . . . . . . . . 925--945
            Belinda Phipson and   
                Stanley Lee and   
            Ian J. Majewski and   
        Warren S. Alexander and   
                Gordon K. Smyth   Robust hyperparameter estimation
                                  protects against hypervariable genes and
                                  improves power to detect differential
                                  expression . . . . . . . . . . . . . . . 946--963
               Carlo Gaetan and   
              Paolo Girardi and   
            Roberto Pastres and   
                 Antoine Mangin   Clustering Chlorophyll-a satellite data
                                  using quantiles  . . . . . . . . . . . . 964--988
                  Hui Jiang and   
           Patrick W. Saart and   
                    Yingcun Xia   Asymmetric conditional correlations in
                                  stock returns  . . . . . . . . . . . . . 989--1018
                   Pixu Shi and   
                 Anru Zhang and   
                     Hongzhe Li   Regression analysis for microbiome
                                  compositional data . . . . . . . . . . . 1019--1040
           Ephraim M. Hanks and   
            Mevin B. Hooten and   
            Steven T. Knick and   
      Sara J. Oyler-McCance and   
           Jennifer A. Fike and   
              Todd B. Cross and   
            Michael K. Schwartz   Latent spatial models and sampling
                                  design for landscape genetics  . . . . . 1041--1062
             Seunghwan Park and   
              Jae Kwang Kim and   
                    Sangun Park   An imputation approach for handling
                                  mixed-mode surveys . . . . . . . . . . . 1063--1085
                 Luke Keele and   
                Jason W. Morgan   How strong is strong enough?
                                  Strengthening instruments through
                                  matching and weak instrument tests . . . 1086--1106
         Raymond K. W. Wong and   
           Vinay L. Kashyap and   
           Thomas C. M. Lee and   
               David A. van Dyk   Detecting abrupt changes in the spectra
                                  of high-energy astrophysical sources . . 1107--1134
                Nadja Klein and   
               Thomas Kneib and   
                Stefan Lang and   
                 Alexander Sohn   Correction: Bayesian structured additive
                                  distributional regression with an
                                  application to regional income
                                  inequality in Germany  . . . . . . . . . 1135--1136
                      Anonymous   Editorial Board  . . . . . . . . . . . . ??
                      Anonymous   Table of Contents  . . . . . . . . . . . ??

Annals of Applied Statistics
Volume 10, Number 3, September, 2016

         Raymond K. W. Wong and   
           Thomas C. M. Lee and   
              Debashis Paul and   
                   Jie Peng and   
Alzheimer's Disease Neuroimaging Initiative   Fiber direction estimation, smoothing
                                  and tracking in diffusion MRI  . . . . . 1137--1156
              Armin Schwartzman   Discussion of ``Fiber direction
                                  estimation in diffusion MRI''  . . . . . 1157--1159
                Nicole A. Lazar   Discussion of ``Fiber direction
                                  estimation in diffusion MRI''  . . . . . 1160--1161
                  Jian Kang and   
                       Lexin Li   Discussion of ``Fiber direction
                                  estimation in diffusion MRI''  . . . . . 1162--1165
         Raymond K. W. Wong and   
           Thomas C. M. Lee and   
              Debashis Paul and   
                       Jie Peng   Rejoinder: ``Fiber direction estimation,
                                  smoothing and tracking in diffusion
                                  MRI''  . . . . . . . . . . . . . . . . . 1166--1169
               Bruno Arpino and   
              Alessandra Mattei   Assessing the causal effects of
                                  financial aids to firms in Tuscany
                                  allowing for interference  . . . . . . . 1170--1194
                     Han Wu and   
                         Yu Zhu   Deconvolution of base pair level RNA-Seq
                                  read counts for quantification of
                                  transcript expression levels . . . . . . 1195--1216
               Ian Johnston and   
            Timothy Hancock and   
          Hiroshi Mamitsuka and   
                  Luis Carvalho   Gene-proximity models for genome-wide
                                  association studies  . . . . . . . . . . 1217--1244
                 Avi Feller and   
               Todd Grindal and   
              Luke Miratrix and   
                Lindsay C. Page   Compared to what? Variation in the
                                  impacts of early childhood education by
                                  alternative care type  . . . . . . . . . 1245--1285
              Abhirup Datta and   
           Sudipto Banerjee and   
           Andrew O. Finley and   
        Nicholas A. S. Hamm and   
                 Martijn Schaap   Nonseparable dynamic nearest neighbor
                                  Gaussian process models for large
                                  spatio-temporal data with an application
                                  to particulate matter analysis . . . . . 1286--1316
                Mengyang Gu and   
                James O. Berger   Parallel partial Gaussian process
                                  emulation for computer models with
                                  massive output . . . . . . . . . . . . . 1317--1347
               Chandler Zuo and   
                Kailei Chen and   
             Kyle J. Hewitt and   
          Emery H. Bresnick and   
         Sündüz Keles   A hierarchical framework for state-space
                                  matrix inference and clustering  . . . . 1348--1372
         Thomas E. Bartlett and   
                  Alexey Zaikin   Detection of epigenomic network
                                  community oncomarkers  . . . . . . . . . 1373--1396
                   Fang Han and   
                Xiaoyan Han and   
                    Han Liu and   
                    Brian Caffo   Sparse median graphs estimation in a
                                  high-dimensional semiparametric model    1397--1426
                 Duncan Lee and   
                  Andrew Lawson   Quantifying the spatial inequality and
                                  temporal trends in maternal smoking
                                  rates in Glasgow . . . . . . . . . . . . 1427--1446
              Paul R. Rosenbaum   Using Scheffé projections for multiple
                                  outcomes in an observational study of
                                  smoking and periodontal disease  . . . . 1447--1471
Vanda Inácio de Carvalho and   
         Miguel de Carvalho and   
             Todd A. Alonzo and   
Wenceslao González-Manteiga   Functional covariate-adjusted partial
                                  area under the specificity-ROC curve
                                  with an application to metabolic
                                  syndrome diagnosis . . . . . . . . . . . 1472--1495
               Julyan Arbel and   
           Kerrie Mengersen and   
                Judith Rousseau   Bayesian nonparametric dependent model
                                  for partially replicated data: The
                                  influence of fuel spills on species
                                  diversity  . . . . . . . . . . . . . . . 1496--1516
                   Yang Liu and   
             James V. Zidek and   
           Andrew W. Trites and   
              Brian C. Battaile   Bayesian data fusion approaches to
                                  predicting spatial tracks: Application
                                  to marine mammals  . . . . . . . . . . . 1517--1546
            Thierry Chekouo and   
        Francesco C. Stingo and   
           Michele Guindani and   
                     Kim-Anh Do   A Bayesian predictive model for imaging
                                  genetics with application to
                                  schizophrenia  . . . . . . . . . . . . . 1547--1571
             Eleni Matechou and   
           Rachel S. McCrea and   
         Byron J. T. Morgan and   
             Darryn J. Nash and   
           Richard A. Griffiths   Open models for removal data . . . . . . 1572--1589
          Daniel W. Gladish and   
           Petra M. Kuhnert and   
         Daniel E. Pagendam and   
       Christopher K. Wikle and   
            Rebecca Bartley and   
             Ross D. Searle and   
             Robin J. Ellis and   
            Cameron Dougall and   
          Ryan D. R. Turner and   
           Stephen E. Lewis and   
     Zoë T. Bainbridge and   
                  Jon E. Brodie   Spatio-temporal assimilation of modelled
                                  catchment loads with monitoring data in
                                  the Great Barrier Reef . . . . . . . . . 1590--1618
                   Xiaoquan Wen   Molecular QTL discovery incorporating
                                  genomic annotations using Bayesian false
                                  discovery rate control . . . . . . . . . 1619--1638
                  Han Lin Shang   Mortality and life expectancy
                                  forecasting for a group of populations
                                  in developed countries: A multilevel
                                  functional data method . . . . . . . . . 1639--1672
           Brook T. Russell and   
           Daniel S. Cooley and   
          William C. Porter and   
             Brian J. Reich and   
               Colette L. Heald   Data mining to investigate the
                                  meteorological drivers for extreme
                                  ground level ozone events  . . . . . . . 1673--1698
                    Jie Liu and   
             Chunming Zhang and   
                     David Page   Multiple testing under dependence via
                                  graphical models . . . . . . . . . . . . 1699--1724
            Eric Warren Fox and   
   Frederic Paik Schoenberg and   
             Joshua Seth Gordon   Spatially inhomogeneous background rate
                                  estimators and uncertainty
                                  quantification for nonparametric Hawkes
                                  point process models of earthquake
                                  occurrences  . . . . . . . . . . . . . . 1725--1756
               Kaushik Jana and   
           Debasis Sengupta and   
                   Kalyan Rudra   Correction of bifurcated river flow
                                  measurements from historical data:
                                  Paving the way for the Teesta water
                                  sharing treaty . . . . . . . . . . . . . 1757--1775
                      Anonymous   Editorial Board  . . . . . . . . . . . . ??
                      Anonymous   Table of Contents  . . . . . . . . . . . ??

Annals of Applied Statistics
Volume 10, Number 4, December, 2016

           Bernard W. Silverman   Introduction to discussion of
                                  ``Coauthorship and citation networks for
                                  statisticians''  . . . . . . . . . . . . 1777--1778
               Pengsheng Ji and   
                    Jiashun Jin   Coauthorship and citation networks for
                                  statisticians  . . . . . . . . . . . . . 1779--1812
             Pedro Regueiro and   
      Abel Rodríguez and   
                      Juan Sosa   Discussion of ``Coauthorship and
                                  citation networks for statisticians''    1813--1819
                  Song Wang and   
                      Karl Rohe   Discussion of ``Coauthorship and
                                  citation networks for statisticians''    1820--1826
              Vishesh Karwa and   
               Sonja Petrovi\'c   Discussion of ``Coauthorship and
                                  citation networks for statisticians''    1827--1834
               Mladen Kolar and   
                     Matt Taddy   Discussion of ``Coauthorship and
                                  citation networks for statisticians''    1835--1841
            Forrest W. Crawford   Discussion of ``Coauthorship and
                                  citation networks for statisticians''    1842--1845
               Pengsheng Ji and   
                    Jiashun Jin   Rejoinder: ``Coauthorship and citation
                                  networks for statisticians'' . . . . . . 1846--1853
                 Eardi Lila and   
           John A. D. Aston and   
              Laura M. Sangalli   Smooth Principal Component Analysis over
                                  two-dimensional manifolds with an
                                  application to neuroimaging  . . . . . . 1854--1879
                   Kun Chen and   
            Eric A. Hoffman and   
           Indu Seetharaman and   
                Feiran Jiao and   
             Ching-Long Lin and   
                  Kung-Sik Chan   Linking lung airway structure to
                                  pulmonary function via composite bridge
                                  regression . . . . . . . . . . . . . . . 1880--1906
          Bailey K. Fosdick and   
              Maria DeYoreo and   
               Jerome P. Reiter   Categorical data fusion using auxiliary
                                  information  . . . . . . . . . . . . . . 1907--1929
                    Ran Shi and   
                       Ying Guo   Investigating differences in brain
                                  functional networks using hierarchical
                                  covariate-adjusted independent component
                                  analysis . . . . . . . . . . . . . . . . 1930--1957
               Zach Branson and   
        Tirthankar Dasgupta and   
                Donald B. Rubin   Improving covariate balance in $ 2^K $
                                  factorial designs via rerandomization
                                  with an application to a New York City
                                  Department of Education High School
                                  Study  . . . . . . . . . . . . . . . . . 1958--1976
               Zhengyi Zhou and   
              David S. Matteson   Predicting Melbourne ambulance demand
                                  using kernel warping . . . . . . . . . . 1977--1996
            Cinar Kilcioglu and   
     José R. Zubizarreta   Maximizing the information content of a
                                  balanced matched sample in a study of
                                  the economic performance of green
                                  buildings  . . . . . . . . . . . . . . . 1997--2020
              Ryan Admiraal and   
               Mark S. Handcock   Modeling concurrency and selective
                                  mixing in heterosexual partnership
                                  networks with applications to sexually
                                  transmitted diseases . . . . . . . . . . 2021--2046
             Yongliang Zhai and   
Alexandre Bouchard-Côté   Inferring rooted population trees using
                                  asymmetric neighbor joining  . . . . . . 2047--2074
             Hugo C. Winter and   
           Jonathan A. Tawn and   
                 Simon J. Brown   Modelling the effect of the El
                                  Niño--Southern Oscillation on extreme
                                  spatial temperature events over
                                  Australia  . . . . . . . . . . . . . . . 2075--2101
                   Chi Song and   
                 Xiaoyi Min and   
                   Heping Zhang   The screening and ranking algorithm for
                                  change-points detection in multiple
                                  samples  . . . . . . . . . . . . . . . . 2102--2129
            Tanya P. Garcia and   
             Samuel Müller   Cox regression with exclusion
                                  frequency-based weights to identify
                                  neuroimaging markers relevant to
                                  Huntington's disease onset . . . . . . . 2130--2156
           Terrance D. Savitsky   Bayesian nonparametric multiresolution
                                  estimation for the American Community
                                  Survey . . . . . . . . . . . . . . . . . 2157--2181
            Henry R. Scharf and   
            Mevin B. Hooten and   
          Bailey K. Fosdick and   
           Devin S. Johnson and   
             Josh M. London and   
                 John W. Durban   Dynamic social networks based on
                                  movement . . . . . . . . . . . . . . . . 2182--2202
            Daniele Durante and   
                David B. Dunson   Locally adaptive dynamic networks  . . . 2203--2232
            John H. Spivack and   
                      Bin Cheng   Estimating odds ratios under a
                                  case-background design with an
                                  application to a study of Sorafenib
                                  accessibility  . . . . . . . . . . . . . 2233--2253
             Naim U. Rashid and   
                    Wei Sun and   
              Joseph G. Ibrahim   A statistical model to assess
                                  (allele-specific) associations between
                                  gene expression and epigenetic features
                                  using sequencing data  . . . . . . . . . 2254--2273
                  Won Chang and   
               Murali Haran and   
          Patrick Applegate and   
                  David Pollard   Improving ice sheet model calibration
                                  using paleoclimate and modern data . . . 2274--2302
             Emeric Thibaud and   
                 Juha Aalto and   
           Daniel S. Cooley and   
         Anthony C. Davison and   
                 Juha Heikkinen   Bayesian inference for the
                                  Brown--Resnick process, with an
                                  application to extreme low temperatures  2303--2324
          Gina-Maria Pomann and   
           Ana-Maria Staicu and   
           Edgar J. Lobaton and   
            Amanda F. Mejia and   
             Blake E. Dewey and   
            Daniel S. Reich and   
       Elizabeth M. Sweeney and   
           Russell T. Shinohara   A lag functional linear model for
                                  prediction of magnetization transfer
                                  ratio in multiple sclerosis lesions  . . 2325--2348
                 Ruitao Lin and   
                   Guosheng Yin   Bootstrap aggregating continual
                                  reassessment method for dose finding in
                                  drug-combination trials  . . . . . . . . 2349--2376
           Francesco Marass and   
           Florent Mouliere and   
                    Ke Yuan and   
           Nitzan Rosenfeld and   
              Florian Markowetz   A phylogenetic latent feature model for
                                  clonal deconvolution . . . . . . . . . . 2377--2404
            Leonardo Grilli and   
             Fulvia Pennoni and   
           Carla Rampichini and   
                 Isabella Romeo   Exploiting TIMSS and PIRLS combined
                                  data: Multivariate multilevel modelling
                                  of student achievement . . . . . . . . . 2405--2426
                      Anonymous   Editorial Board  . . . . . . . . . . . . ??
                      Anonymous   Table of Contents  . . . . . . . . . . . ??


Annals of Applied Statistics
Volume 11, Number 1, March, 2017

                  Xinyao Ji and   
               Gunther Fink and   
           Paul Jacob Robyn and   
                 Dylan S. Small   Randomization inference for
                                  stepped-wedge cluster-randomized trials:
                                  An application to community-based health
                                  insurance  . . . . . . . . . . . . . . . 1--20
             Eleni Matechou and   
          François Caron   Modelling individual migration patterns
                                  using a Bayesian nonparametric approach
                                  for capture-recapture data . . . . . . . 21--40
   Gwenaël G. R. Leday and   
    Mathisca C. M. de Gunst and   
          Gino B. Kpogbezan and   
       Aad W. van der Vaart and   
    Wessel N. van Wieringen and   
            Mark A. van de Wiel   Gene network reconstruction using
                                  global-local shrinkage priors  . . . . . 41--68
          Rachel M. Messick and   
          Matthew J. Heaton and   
                    Neil Hansen   Multivariate spatial mapping of soil
                                  water holding capacity with spatially
                                  varying cross-correlations . . . . . . . 69--92
           Joshua P. Keller and   
              Mathias Drton and   
             Timothy Larson and   
            Joel D. Kaufman and   
            Dale P. Sandler and   
                 Adam A. Szpiro   Covariate-adaptive clustering of
                                  exposures for air pollution epidemiology
                                  cohorts  . . . . . . . . . . . . . . . . 93--113
                Lin S. Chen and   
               Jiebiao Wang and   
              Xianlong Wang and   
                       Pei Wang   A mixed-effects model for incomplete
                                  data from labeling-based quantitative
                                  proteomics experiments . . . . . . . . . 114--138
           Guilherme Ludwig and   
                Tingjin Chu and   
                    Jun Zhu and   
                Haonan Wang and   
                Kirsten Koehler   Static and roving sensor data fusion for
                                  spatio-temporal hazard mapping with
                                  application to occupational exposure
                                  assessment . . . . . . . . . . . . . . . 139--160
               Yuping Zhang and   
           Zhengqing Ouyang and   
                    Hongyu Zhao   A statistical framework for data
                                  integration through graphical models
                                  with application to cancer genomics  . . 161--184
               Chenkun Wang and   
                    Hai Liu and   
                     Sujuan Gao   A penalized Cox proportional hazards
                                  model with multiple time-varying
                                  exposures  . . . . . . . . . . . . . . . 185--201
                Dave Osthus and   
           Kyle S. Hickmann and   
         Petruta C. Caragea and   
                Dave Higdon and   
              Sara Y. Del Valle   Forecasting seasonal influenza with a
                                  state-space SIR model  . . . . . . . . . 202--224
         Trang Quynh Nguyen and   
           Cyrus Ebnesajjad and   
            Stephen R. Cole and   
            Elizabeth A. Stuart   Sensitivity analysis for an unobserved
                                  moderator in RCT-to-target-population
                                  generalization of treatment effects  . . 225--247
               Debbie J. Dupuis   Electricity price dependence in New York
                                  State zones: A robust detrended
                                  correlation approach . . . . . . . . . . 248--273
                  Xiao Song and   
                        Li Wang   Partially time-varying coefficient
                                  proportional hazards models with
                                  error-prone time-dependent covariates
                                  --- an application to the AIDS Clinical
                                  Trial Group 175 data . . . . . . . . . . 274--296
           Heidi J. Fischer and   
              Qunfang Zhang and   
                 Yifang Zhu and   
                Robert E. Weiss   Functional time series models for
                                  ultrafine particle distributions . . . . 297--319
       Jan van de Kassteele and   
           Jan van Eijkeren and   
                 Jacco Wallinga   Efficient estimation of age-specific
                                  social contact rates between men and
                                  women  . . . . . . . . . . . . . . . . . 320--339
            Erin M. Schliep and   
            Alan E. Gelfand and   
             James S. Clark and   
             Bradley J. Tomasek   Biomass prediction using a
                                  density-dependent diameter distribution
                                  model  . . . . . . . . . . . . . . . . . 340--361
          Stacy L. DeRuiter and   
            Roland Langrock and   
            Tomas Skirbutas and   
        Jeremy A. Goldbogen and   
          John Calambokidis and   
        Ari S. Friedlaender and   
            Brandon L. Southall   A multivariate mixed hidden Markov model
                                  for blue whale behaviour and responses
                                  to sound exposure  . . . . . . . . . . . 362--392
             Tracy Holsclaw and   
           Arthur M. Greene and   
        Andrew W. Robertson and   
                 Padhraic Smyth   Bayesian nonhomogeneous Markov models
                                  via Pólya--Gamma data augmentation with
                                  applications to rainfall modeling  . . . 393--426
         Pavel N. Krivitsky and   
                 Martina Morris   Inference for social network models from
                                  egocentrically sampled data, with
                                  application to understanding persistent
                                  racial disparities in HIV prevalence in
                                  the US . . . . . . . . . . . . . . . . . 427--455
         Chelsea L. Lofland and   
      Abel Rodríguez and   
                    Scott Moser   Assessing differences in legislators'
                                  revealed preferences: A case study on
                                  the 107th U.S. Senate  . . . . . . . . . 456--479

Annals of Applied Statistics
Volume 11, Number 2, June, 2017

         Shinichiro Shirota and   
                Alan E. Gelfand   Space and circular time log Gaussian Cox
                                  processes with application to crime
                                  event data . . . . . . . . . . . . . . . 481--503
           Sergio Venturini and   
        Jessica M. Franklin and   
              Laura Morlock and   
             Francesca Dominici   Random effects models for identifying
                                  the most harmful medication errors in a
                                  large, voluntary reporting database  . . 504--526
      Abel Rodríguez and   
                 Ziwei Wang and   
              Athanasios Kottas   Assessing systematic risk in the S&P500
                                  index between 2000 and 2011: A Bayesian
                                  nonparametric approach . . . . . . . . . 527--552
                     Lu Xin and   
                     Mu Zhu and   
                   Hugh Chipman   A continuous-time stochastic block model
                                  for basketball networks  . . . . . . . . 553--597
         Kamiar Rahnama Rad and   
         Timothy A. Machado and   
                  Liam Paninski   Robust and scalable Bayesian analysis of
                                  spatial neural tuning function data  . . 598--637
               Yingye Zheng and   
             Marshall Brown and   
                   Anna Lok and   
                     Tianxi Cai   Improving efficiency in biomarker
                                  incremental value evaluation under
                                  two-phase designs  . . . . . . . . . . . 638--654
             Madeleine Cule and   
                 Peter Donnelly   Stochastic modelling and inference in
                                  electronic hospital databases for the
                                  spread of infections:
                                  \bionameClostridium difficile
                                  transmission in Oxfordshire hospitals
                                  2007--2010 . . . . . . . . . . . . . . . 655--679
            Yves Thibaudeau and   
                  Eric Slud and   
             Alfred Gottschalck   Modeling log-linear conditional
                                  probabilities for estimation in surveys  680--697
         Cedric E. Ginestet and   
                     Jun Li and   
       Prakash Balachandran and   
           Steven Rosenberg and   
               Eric D. Kolaczyk   Hypothesis testing for network data in
                                  functional neuroimaging  . . . . . . . . 725--750
            David R. Hunter and   
                     Le Bao and   
                      Mary Poss   Assignment of endogenous retrovirus
                                  integration sites using a mixture model  751--770
                   Tao Wang and   
                    Hongyu Zhao   Structured subcomposition selection in
                                  regression and its application to
                                  microbiome data analysis . . . . . . . . 771--791
                    You Ren and   
               Emily B. Fox and   
                   Andrew Bruce   Clustering correlated, sparse data
                                  streams to estimate a localized housing
                                  price index  . . . . . . . . . . . . . . 808--839
            Sarah Friedrich and   
             Jan Beyersmann and   
          Ursula Winterfeld and   
          Martin Schumacher and   
                Arthur Allignol   Nonparametric estimation of pregnancy
                                  outcome probabilities  . . . . . . . . . 840--867
             Tingting Zhang and   
                Qiannan Yin and   
                Brian Caffo and   
                  Yinge Sun and   
             Dana Boatman-Reich   Bayesian inference of high-dimensional,
                                  cluster-structured ordinary differential
                                  equation models with applications to
                                  brain connectivity studies . . . . . . . 868--897
         Oleksandr Gromenko and   
             Piotr Kokoszka and   
                      Jan Sojka   Evaluation of the cooling trend in the
                                  ionosphere using functional regression
                                  with incomplete curves . . . . . . . . . 898--918
        Elizabeth L. Ogburn and   
           Tyler J. VanderWeele   Vaccines, contagion, and social networks 919--948
            Patrick Schnell and   
                    Qi Tang and   
          Peter Müller and   
              Bradley P. Carlin   Subgroup inference for multiple
                                  treatments and multiple endpoints in an
                                  Alzheimer's disease treatment trial  . . 949--966
               Yichen Cheng and   
               James Y. Dai and   
          Thomas G. Paulson and   
                Xiaoyu Wang and   
                Xiaohong Li and   
              Brian J. Reid and   
             Charles Kooperberg   Quantification of multiple tumor clones
                                  using gene array and sequencing data . . 967--991
                  Shuyi Liu and   
                         Wei Wu   Generalized Mahalanobis depth in point
                                  process and its application in neural
                                  coding . . . . . . . . . . . . . . . . . 992--1010
             Silvia Cagnone and   
          Simone Giannerini and   
                  Lucia Modugno   Multilevel models with stochastic
                                  volatility for repeated cross-sections:
                                  An application to tribal art prices  . . 1040--1062
                Noorie Hyun and   
               Li C. Cheung and   
                   Qing Pan and   
             Mark Schiffman and   
               Hormuzd A. Katki   Flexible risk prediction models for left
                                  or interval-censored data from
                                  electronic health records  . . . . . . . 1063--1084
            Tanya P. Garcia and   
                 Yanyuan Ma and   
               Karen Marder and   
                   Yuanjia Wang   Robust mixed effects model for clustered
                                  failure time data: Application to
                                  Huntington's disease event measures  . . 1085--1116
                   Jiti Gao and   
                   Bin Peng and   
                   Zhao Ren and   
                  Xiaohui Zhang   Variable selection for a categorical
                                  varying-coefficient model with
                                  identifications for determinants of body
                                  mass index . . . . . . . . . . . . . . . 1117--1145
              Luke J. Kelly and   
              Geoff K. Nicholls   Lateral transfer in Stochastic Dollo
                                  models . . . . . . . . . . . . . . . . . 1146--1168
                   Hao Chen and   
               Yuchao Jiang and   
            Kara N. Maxwell and   
     Katherine L. Nathanson and   
                    Nancy Zhang   Allele-specific copy number estimation
                                  by whole exome sequencing  . . . . . . . 1169--1192

Annals of Applied Statistics
Volume 11, Number 3, September, 2017

             Camelia Simoiu and   
         Sam Corbett-Davies and   
                    Sharad Goel   The problem of infra-marginality in
                                  outcome tests for discrimination . . . . 1193--1216
   Michael Salter-Townshend and   
             Tyler H. McCormick   Latent space models for multiview
                                  network data . . . . . . . . . . . . . . 1217--1244
            Leontine Alkema and   
              Sanqian Zhang and   
                 Doris Chou and   
             Alison Gemmill and   
            Ann-Beth Moller and   
               Doris Ma Fat and   
                   Lale Say and   
              Colin Mathers and   
                   Daniel Hogan   A Bayesian approach to the global
                                  estimation of maternal mortality . . . . 1245--1274
               Lo-Bin Chang and   
            Eran Borenstein and   
                  Wei Zhang and   
                   Stuart Geman   Maximum likelihood features for
                                  generative image models  . . . . . . . . 1275--1308
               Hyungsuk Tak and   
              Kaisey Mandel and   
           David A. van Dyk and   
           Vinay L. Kashyap and   
               Xiao-Li Meng and   
            Aneta Siemiginowska   Bayesian estimates of astronomical time
                                  delays between gravitationally lensed
                                  stochastic light curves  . . . . . . . . 1309--1348
                     Xu Shi and   
           Hristina Pashova and   
            Patrick J. Heagerty   Comparing healthcare utilization
                                  patterns via global differences in the
                                  endorsement of current procedural
                                  terminology codes  . . . . . . . . . . . 1349--1374
           Marcelo Hartmann and   
         Geoffrey R. Hosack and   
         Richard M. Hillary and   
                Jarno Vanhatalo   Gaussian process framework for temporal
                                  dependence and discrepancy functions in
                                  Ricker-type population growth models . . 1375--1402
             Romain Chailan and   
         Gwladys Toulemonde and   
                Jean-Noel Bacro   A semiparametric method to simulate
                                  bivariate space-time extremes  . . . . . 1403--1428
               Tso-Jung Yen and   
              Zong-Rong Lee and   
                Yi-Hau Chen and   
                 Yu-Min Yen and   
              Jing-Shiang Hwang   Estimating links of a network from time
                                  to event data  . . . . . . . . . . . . . 1429--1451
             Y. Samuel Wang and   
           Ross L. Matsueda and   
              Elena A. Erosheva   A variational EM method for mixed
                                  membership models with multivariate rank
                                  data: An analysis of public policy
                                  preferences  . . . . . . . . . . . . . . 1452--1480
                Binghui Liu and   
                   Chong Wu and   
              Xiaotong Shen and   
                        Wei Pan   A novel and efficient algorithm for de
                                  novo discovery of mutated driver
                                  pathways in cancer . . . . . . . . . . . 1481--1512
                  Bei Jiang and   
                Eva Petkova and   
            Thaddeus Tarpey and   
                  R. Todd Ogden   Latent class modeling using matrix
                                  covariates with application to
                                  identifying early placebo responders
                                  based on EEG signals . . . . . . . . . . 1513--1536
    Aurélien Nicosia and   
           Thierry Duchesne and   
          Louis-Paul Rivest and   
                  Daniel Fortin   A multi-state conditional logistic
                                  regression model for the analysis of
                                  animal movement  . . . . . . . . . . . . 1537--1560
                  Xiang Zhu and   
               Matthew Stephens   Bayesian large-scale multiple regression
                                  with summary statistics from genome-wide
                                  association studies  . . . . . . . . . . 1561--1592
         Antonello Maruotti and   
                  Jan Bulla and   
           Francesco Lagona and   
               Marco Picone and   
             Francesca Martella   Dynamic mixtures of factor analyzers to
                                  characterize multivariate air pollutant
                                  exposures  . . . . . . . . . . . . . . . 1617--1648
               Fangrong Yan and   
                   Xiao Lin and   
                   Xuelin Huang   Dynamic prediction of disease
                                  progression for leukemia patients by
                                  functional principal component analysis
                                  of longitudinal expression levels of an
                                  oncogene . . . . . . . . . . . . . . . . 1649--1670
             Mikael Kuusela and   
                Philip B. Stark   Shape-constrained uncertainty
                                  quantification in unfolding steeply
                                  falling elementary particle spectra  . . 1671--1710
         Jan-Otto Hooghoudt and   
          Margarida Barroso and   
           Rasmus Waagepetersen   Toward Bayesian inference of the spatial
                                  distribution of proteins from three-cube
                                  Förster resonance energy transfer data    1711--1737
              Xiaoying Tang and   
          Michael I. Miller and   
                 Laurent Younes   Biomarker change-point estimation with
                                  right censoring in longitudinal studies  1738--1762
              Runchao Jiang and   
                  Wenbin Lu and   
                   Rui Song and   
         Michael G. Hudgens and   
               Sonia Naprvavnik   Doubly robust estimation of optimal
                                  treatment regimes for survival data-with
                                  application to an HIV/AIDS study . . . . 1763--1786
                   Jue Wang and   
                  Sheng Luo and   
                       Liang Li   Dynamic prediction for multiple repeated
                                  measures and event time data: An
                                  application to Parkinson's disease . . . 1787--1809
                Lingxue Zhu and   
                   Jing Lei and   
              Bernie Devlin and   
                 Kathryn Roeder   Testing high-dimensional covariance
                                  matrices, with application to detecting
                                  schizophrenia risk genes . . . . . . . . 1810--1831

Annals of Applied Statistics
Volume 11, Number 4, December, 2017

              Natalia Nolde and   
              Johanna F. Ziegel   Elicitability and backtesting:
                                  Perspectives for banking regulation  . . 1833--1874
              Hajo Holzmann and   
                  Bernhard Klar   Discussion of ``Elicitability and
                                  backtesting: Perspectives for banking
                                  regulation'' . . . . . . . . . . . . . . 1875--1882
                Patrick Schmidt   Discussion of ``Elicitability and
                                  backtesting: Perspectives for banking
                                  regulation'' . . . . . . . . . . . . . . 1883--1885
               Mark H. A. Davis   Discussion of ``Elicitability and
                                  backtesting: Perspectives for banking
                                  regulation'' . . . . . . . . . . . . . . 1886--1887
                      Chen Zhou   Discussion on ``Elicitability and
                                  backtesting: Perspectives for banking
                                  regulation'' . . . . . . . . . . . . . . 1888--1893
                    Marie Kratz   Discussion of ``Elicitability and
                                  backtesting: Perspectives for banking
                                  regulation'' . . . . . . . . . . . . . . 1894--1900
              Natalia Nolde and   
              Johanna F. Ziegel   Rejoinder: ``Elicitability and
                                  backtesting: Perspectives for banking
                                  regulation'' . . . . . . . . . . . . . . 1901--1911
            Peter M. Aronow and   
                    Cyrus Samii   Estimating average causal effects under
                                  general interference, with application
                                  to a social network experiment . . . . . 1912--1947
        Nynke M. D. Niezink and   
             Tom A. B. Snijders   Co-evolution of social networks and
                                  continuous actor attributes  . . . . . . 1948--1973
         William Chad Young and   
          Adrian E. Raftery and   
                   Ka Yee Yeung   Model-based clustering with data
                                  correction for removing artifacts in
                                  gene expression data . . . . . . . . . . 1998--2026
                     Xiang Zhou   A unified framework for variance
                                  component estimation with summary
                                  statistics in genome-wide association
                                  studies  . . . . . . . . . . . . . . . . 2027--2051
              Yuanyuan Duan and   
                  Yili Hong and   
          William Q. Meeker and   
         Deborah L. Stanley and   
                    Xiaohong Gu   Photodegradation modeling based on
                                  laboratory accelerated test data and
                                  predictions under outdoor weathering for
                                  polymeric materials  . . . . . . . . . . 2052--2079
                Michael Fop and   
             Keith M. Smart and   
          Thomas Brendan Murphy   Variable selection for latent class
                                  analysis with application to low back
                                  pain diagnosis . . . . . . . . . . . . . 2080--2110
        Isabelle S. Beaudry and   
             Krista J. Gile and   
                Shruti H. Mehta   Inference for respondent-driven sampling
                                  with misclassification . . . . . . . . . 2111--2141
          Ricardo Pio Monti and   
Christoforos Anagnostopoulos and   
               Giovanni Montana   Learning population and subject-specific
                                  brain connectivity networks via mixed
                                  neighborhood selection . . . . . . . . . 2142--2164
             Harrison Quick and   
            Lance A. Waller and   
                 Michele Casper   Multivariate spatiotemporal modeling of
                                  age-specific stroke mortality  . . . . . 2165--2177
                 E. Cantoni and   
          J. Mills Flemming and   
                    A. H. Welsh   A random-effects hurdle model for
                                  predicting bycatch of endangered marine
                                  species  . . . . . . . . . . . . . . . . 2178--2199
                   Zhou Fan and   
                  Lester Mackey   Empirical Bayesian analysis of
                                  simultaneous changepoints in multiple
                                  data sequences . . . . . . . . . . . . . 2200--2221
            Linda S. L. Tan and   
                 Ajay Jasra and   
             Maria De Iorio and   
           Timothy M. D. Ebbels   Bayesian inference for multiple Gaussian
                                  graphical models with application to
                                  metabolic association networks . . . . . 2222--2251
           Rong W. Zablocki and   
          Richard A. Levine and   
           Andrew J. Schork and   
                 Shujing Xu and   
               Yunpeng Wang and   
                Chun C. Fan and   
             Wesley K. Thompson   Semiparametric covariate-modulated local
                                  false discovery rate for genome-wide
                                  association studies  . . . . . . . . . . 2252--2269
                  Yuan Yuan and   
            Fabian E. Bachl and   
              Finn Lindgren and   
          David L. Borchers and   
           Janine B. Illian and   
        Stephen T. Buckland and   
           Håvard Rue and   
                 Tim Gerrodette   Point process models for spatio-temporal
                                  distance sampling data from a
                                  large-scale survey of blue whales  . . . 2270--2297
           Deepayan Chakrabarti   Modeling node incentives in directed
                                  networks . . . . . . . . . . . . . . . . 2298--2331
                  Eric Hare and   
              Heike Hofmann and   
              Alicia Carriquiry   Automatic matching of bullet land
                                  impressions  . . . . . . . . . . . . . . 2332--2356
             Colin S. Gillespie   Estimating the number of casualties in
                                  the American Indian War: A Bayesian
                                  analysis using the power law
                                  distribution . . . . . . . . . . . . . . 2357--2374
                  Ross Towe and   
                Emma Eastoe and   
              Jonathan Tawn and   
                Philip Jonathan   Statistical downscaling for future
                                  extreme wave heights in the North Sea    2375--2403
              Hajo Holzmann and   
                  Bernhard Klar   Focusing on regions of interest in
                                  forecast evaluation  . . . . . . . . . . 2404--2431