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Volume 120, Number 2--3, August, 1999Liqiang Wei Unified approach for exact calculation of angular momentum coupling and recoupling coefficients . . . . . . . . 222--230
Hong Wei Yang A FDTD analysis on magnetized plasma of Epstein distribution and reflection calculation . . . . . . . . . . . . . . 55--60
Hongli Yang and Xinyuan Wu and Xiong You and Yonglei Fang Extended RKN-type methods for numerical integration of perturbed oscillators . . 1777--1794
M. M. Rashidi The modified differential transform method for solving MHD boundary-layer equations . . . . . . . . . . . . . . . 2210--2217 S. Nath TERS v2.0: An improved version of TERS 2392--2393
Vineet K. Singh and Rajesh K. Pandey and Saurabh Singh A stable algorithm for Hankel transforms using hybrid of Block-pulse and Legendre polynomials . . . . . . . . . . . . . . 1--10 Weiwei Cai and Lin Ma Applications of critical temperature in minimizing functions of continuous variables with simulated annealing algorithm . . . . . . . . . . . . . . . 11--16 N. Mohankumar and S. Sen and R. Ramar On the evaluation of correction terms in Gauss--Legendre quadrature . . . . . . . 17--20 M. Amaku and P. R. Pascholati and V. R. Vanin Decay chain differential equations: Solution through matrix algebra . . . . 21--23 M. Aldegunde and Natalia Seoane and A. J. García-Loureiro and K. Kalna Reduction of the self-forces in Monte Carlo simulations of semiconductor devices on unstructured meshes . . . . . 24--34 M. Zacarés and M. Arevalillo-Herráez and S. Abraham A group-theory method to find stationary states in nonlinear discrete symmetry systems . . . . . . . . . . . . . . . . 35--42 Mehdi Dehghan and Ameneh Taleei A compact split-step finite difference method for solving the nonlinear Schrödinger equations with constant and variable coefficients . . . . . . . . . 43--51 Liming Zhang and Ali Deng and Minghong Wang and Shaoqing Yang Numerical study of a novel MFIE formulation using monopolar RWG basis functions . . . . . . . . . . . . . . . 52--60 H. Frerichs and D. Reiter and Y. Feng and D. Harting Block-structured grids in Lagrangian $3$D edge plasma transport simulations 61--70 Robert C. Tautz A new simulation code for particle diffusion in anisotropic, large-scale and turbulent magnetic fields . . . . . 71--77 J. Rashidinia and R. Mohammadi Tension spline approach for the numerical solution of nonlinear Klein--Gordon equation . . . . . . . . . 78--91 J. L. Movilla and J. I. Climente and J. Planelles Dielectric polarization in axially-symmetric nanostructures: a computational approach . . . . . . . . . 92--98 Jae-Suk Yang and Wooseop Kwak Application of Wang--Landau sampling to a protein model using SMMP . . . . . . . 99--104 F. Molnár, Jr. and T. Szakály and R. Mészáros and I. Lagzi Air pollution modelling using a Graphics Processing Unit with CUDA . . . . . . . 105--112 T. Sakurai and H. Tadano and Y. Kuramashi Application of block Krylov subspace algorithms to the Wilson--Dirac equation with multiple right-hand sides in lattice QCD . . . . . . . . . . . . . . 113--117 Anna Ma\'nka-Kraso\'n and Advera Mwijage and Krzysztof Kulakowski Clustering in random line graphs . . . . 118--121 M. ElKacimi and D. Goujdami and H. Przysiezniak and P. Skands One universal extra dimension in Pythia 122--127 D. Conte and E. Esposito and B. Paternoster and L. Gr. Ixaru Some new uses of the $ \eta m ({Z}) $ functions . . . . . . . . . . . . . . . 128--137 P. Bechtle and O. Brein and S. Heinemeyer and G. Weiglein and K. E. Williams HiggsBounds: Confronting arbitrary Higgs sectors with exclusion bounds from LEP and the Tevatron . . . . . . . . . . . . 138--167 I. I. Gontchar and M. V. Chushnyakova A C-code for the double folding interaction potential of two spherical nuclei . . . . . . . . . . . . . . . . . 168--182 M. Januszewski and M. Kostur Accelerating numerical solution of stochastic differential equations with CUDA . . . . . . . . . . . . . . . . . . 183--188 David Eriksson and Johan Rathsman and Oscar Stål 2HDMC --- two-Higgs-doublet model calculator . . . . . . . . . . . . . . . 189--205 Evgeny Z. Liverts and Nir Barnea The two-electron atomic systems. $S$-states . . . . . . . . . . . . . . . 206--212 Guy Engelhard and Jonathan L. Feng and Iftah Galon and David Sanford and Felix Yu SPICE: Simulation Package for Including Flavor in Collider Events . . . . . . . 213--226 Mattias Blennow and Enrique Fernandez-Martinez Neutrino oscillation parameter sampling with MonteCUBES . . . . . . . . . . . . 227--231 B. C. Allanach and M. A. Bernhard Including $R$-parity violation in the numerical computation of the spectrum of the Minimal Supersymmetric Standard Model: SOFTSUSY3.0 . . . . . . . . . . . 232--245 Anonymous Computer Physics Communications --- List of Editors . . . . . . . . . . . . . . . iv--vi Anonymous Editorial Board . . . . . . . . . . . . ??
Thomas Unfer and Jean-Pierre Boeuf and François Rogier and Frédéric Thivet Multi-scale gas discharge simulations using asynchronous adaptive mesh refinement . . . . . . . . . . . . . . . 247--258 Andrea Saltelli and Paola Annoni and Ivano Azzini and Francesca Campolongo and Marco Ratto and Stefano Tarantola Variance based sensitivity analysis of model output. Design and estimator for the total sensitivity index . . . . . . 259--270 Liang Li and Ting-Zhu Huang and Yan-Fei Jing and Yong Zhang Application of the incomplete Cholesky factorization preconditioned Krylov subspace method to the vector finite element method for $3$-D electromagnetic scattering problems . . . . . . . . . . 271--276 Masayuki Toyoda and Taisuke Ozaki Fast spherical Bessel transform via fast Fourier transform and recurrence formula 277--282 Eladio Gutiérrez and Sergio Romero and María A. Trenas and Emilio L. Zapata Quantum computer simulation using the CUDA programming model . . . . . . . . . 283--300 Duo Sun and Rui Jiang and Bing-Hong Wang Timing of traffic lights and phase separation in two-dimensional traffic flow . . . . . . . . . . . . . . . . . . 301--304 A. Andonov and A. Arbuzov and D. Bardin and S. Bondarenko and P. Christova and L. Kalinovskaya and V. Kolesnikov and R. Sadykov Standard SANC modules . . . . . . . . . 305--312 Ji Qiang A high-order fast method for computing convolution integral with smooth kernel 313--316 Cheng-shi Liu Applications of complete discrimination system for polynomial for classifications of traveling wave solutions to nonlinear differential equations . . . . . . . . . . . . . . . 317--324 Hanquan Wang An efficient Chebyshev--Tau spectral method for Ginzburg--Landau--Schrödinger equations . . . . . . . . . . . . . . . 325--340 David W. Holmes and John R. Williams and Peter Tilke An events based algorithm for distributing concurrent tasks on multi-core architectures . . . . . . . . 341--354 Marco D. Mazzeo and Steven Manos and Peter V. Coveney In situ ray tracing and computational steering for interactive blood flow simulation . . . . . . . . . . . . . . . 355--370 Predrag Lazi\'c and Nicolae Atodiresei and Mojtaba Alaei and Vasile Caciuc and Stefan Blügel and Radovan Brako JuNoLo --- Jülich nonlocal code for parallel post-processing evaluation of vdW--DF correlation energy . . . . . . . 371--379 Matías Tueros and Sergio Sciutto TIERRAS: a package to simulate high energy cosmic ray showers underground, underwater and under-ice . . . . . . . . 380--392 S. Jadach and W. Placzek and M. Skrzypek and P. Stoklosa Markovian Monte Carlo program EvolFMC v.2 for solving QCD evolution equations 393--412 Thomas Müller and Frank Grave GeodesicViewer --- a tool for exploring geodesics in the theory of relativity 413--419 D. Germanas and R. K. Kalinauskas and S. Mickevicius Calculation of four-particle harmonic-oscillator transformation brackets . . . . . . . . . . . . . . . . 420--425 A. Borgoo and O. Scharf and G. Gaigalas and M. Godefroid Multiconfiguration electron density function for the ATSP2K-package . . . . 426--439 T. Radtke and S. Fritzsche Simulation of $n$-qubit quantum systems. V. Quantum measurements . . . . . . . . 440--453 Anonymous Editorial Board . . . . . . . . . . . . ??
Xiao-Gang Wang and Tucker Carrington, Jr. Parallel methods for high-dimensional quantum dynamics . . . . . . . . . . . . 455--461 Simone Melchionna and Massimo Bernaschi and Sauro Succi and Efthimios Kaxiras and Frank J. Rybicki and Dimitris Mitsouras and Ahmet U. Coskun and Charles L. Feldman Hydrokinetic approach to large-scale cardiovascular blood flow . . . . . . . 462--472 Zhen-Ting Huang and Huan-Chun Hsu and Chau-Lyan Chang and Chin-Tien Wu and T. F. Jiang Momentum-time flux conservation method for one-dimensional wave equations . . . 473--480 Sitao Ling and Minghui Wang and Musheng Wei Hermitian tridiagonal solution with the least norm to quaternionic least squares problem . . . . . . . . . . . . . . . . 481--488 Leo Brewin A brief introduction to Cadabra: a tool for tensor computations in General Relativity . . . . . . . . . . . . . . . 489--498 Marco Hülsmann and Thorsten Köddermann and Jadran Vrabec and Dirk Reith GROW: a gradient-based optimization workflow for the automated development of molecular models . . . . . . . . . . 499--513 P. Kirby Calculation of radial prolate spheroidal wave functions of the second kind . . . 514--519 Tadeusz Wegner and Andrzej Peczak Implementation of a strain energy-based nonlinear finite element in the object-oriented environment . . . . . . 520--531 M. Antuono and A. Colagrossi and S. Marrone and D. Molteni Free-surface flows solved by means of SPH schemes with numerical diffusive terms . . . . . . . . . . . . . . . . . 532--549 Jian-You Guo and Miao Yu and Jing Wang and Bao-Mei Yao and Peng Jiao A relativistic extension of the complex scaling method using oscillator basis functions . . . . . . . . . . . . . . . 550--556 Wei Jiang and Yingzhen Lin Approximate solution of the fractional advection-dispersion equation . . . . . 557--561 O. T. Kosmas and D. S. Vlachos Phase-fitted discrete Lagrangian integrators . . . . . . . . . . . . . . 562--568 M. D. Mazzeo and M. Ricci and C. Zannoni The Linked Neighbour List (LNL) method for fast off-lattice Monte Carlo simulations of fluids . . . . . . . . . 569--581 J. Blümlein and D. J. Broadhurst and J. A. M. Vermaseren The Multiple Zeta Value data mine . . . 582--625 Emmanuel Lorin and A. D. Bandrauk Multiresolution scheme for Time-Dependent Schrödinger Equation . . . 626--638 Yonglei Fang and Qinghe Ming and Xinyuan Wu Extended RKN-type methods with minimal dispersion error for perturbed oscillators . . . . . . . . . . . . . . 639--650 Moritz Riede and Rico Schueppel and Kristian O. Sylvester-Hvid and Martin Kühne and Michael C. Röttger and Klaus Zimmermann and Andreas W. Liehr On the communication of scientific data: The Full-Metadata Format . . . . . . . . 651--662 Miglena N. Koleva and Lubin G. Vulkov Two-grid quasilinearization approach to ODEs with applications to model problems in physics and mechanics . . . . . . . . 663--670 R. Yu and J. Zhu and H. Q. Ye Calculations of single-crystal elastic constants made simple . . . . . . . . . 671--675 T. C. Petersen and S. P. Ringer An electron tomography algorithm for reconstructing $3$D morphology using surface tangents of projected scattering interfaces . . . . . . . . . . . . . . . 676--682 J. Lundberg and J. Conrad and W. Rolke and A. Lopez Limits, discovery and cut optimization for a Poisson process with uncertainty in background and signal efficiency: TRolke 2.0 . . . . . . . . . . . . . . . 683--686 Ardavan F. Oskooi and David Roundy and Mihai Ibanescu and Peter Bermel and J. D. Joannopoulos and Steven G. Johnson Meep: a flexible free-software package for electromagnetic simulations by the FDTD method . . . . . . . . . . . . . . 687--702 Thomas Müller and Frank Grave An updated version of the Motion4D-library . . . . . . . . . . . . 703--703 Jaromir Tosiek The Fedosov $ \star $-product in Mathematica . . . . . . . . . . . . . . 704--704 G. M. von Hippel TaylUR 3, a multivariate arbitrary-order automatic differentiation package for Fortran 95 . . . . . . . . . . . . . . . 705--706 Andrzej Daniluk Model-Driven Development for scientific computing. Computations of RHEED intensities for a disordered surface. Part I . . . . . . . . . . . . . . . . . 707--708 Andrzej Daniluk Model-Driven Development for scientific computing. Computations of RHEED intensities for a disordered surface. Part II . . . . . . . . . . . . . . . . 709--710 Sean McConnell and Stephan Fritzsche and Andrey Surzhykov DIRAC: a new version of computer algebra tools for studying the properties and behavior of hydrogen-like ions . . . . . 711--713 Anonymous Editorial Board . . . . . . . . . . . . ??
B. F. McMillan and S. Jolliet and A. Bottino and P. Angelino and T. M. Tran and L. Villard Rapid Fourier space solution of linear partial integro-differential equations in toroidal magnetic confinement geometries . . . . . . . . . . . . . . . 715--719 Nobuaki Ohno and Akira Kageyama Region-of-interest visualization by CAVE VR system with automatic control of level-of-detail . . . . . . . . . . . . 720--725 Wei Su and Ping Qian and Ying Liu and Jiang Shen and Nan-Xian Chen First principle calculations of yttrium-doped palladium clusters . . . . 726--731 Grégory Geneste Free energies of ferroelectric crystals from a microscopic approach . . . . . . 732--745 Björn Oetzel and Friedhelm Bechstedt and Karsten Hannewald Finite-size modelling of electrodes for quantum transport calculations using $k$-space ab initio techniques . . . . . 746--749 Joana G. Freire and Owen J. Brison and Jason A. C. Gallas Complete sets of initial vectors for pattern growth with elementary cellular automata . . . . . . . . . . . . . . . . 750--755 Mathias Wagner and Andrea Walther and Bernd-Jochen Schaefer On the efficient computation of high-order derivatives for implicitly defined functions . . . . . . . . . . . 756--764 Oliver Marquardt and Sixten Boeck and Christoph Freysoldt and Tilmann Hickel and Jörg Neugebauer Plane-wave implementation of the real-space $ k \cdot p $ formalism and continuum elasticity theory . . . . . . 765--771 Mehdi Dehghan and Arezou Ghesmati Numerical simulation of two-dimensional sine--Gordon solitons via a local weak meshless technique based on the radial point interpolation method (RPIM) . . . 772--786 Shaozhong Deng A robust numerical method for self-polarization energy of spherical quantum dots with finite confinement barriers . . . . . . . . . . . . . . . . 787--799 Daniel Reith and Peter Virnau Implementation and performance analysis of bridging Monte Carlo moves for off-lattice single chain polymers in globular states . . . . . . . . . . . . 800--805 T. Kunze and S. Gemming and S. Numazawa and M. Schreiber Low-temperature modeling for degenerate and frustrated Heisenberg systems with anisotropy . . . . . . . . . . . . . . . 806--812 M. F. Ciappina and T. Kirchner and M. Schulz Monte Carlo event generators in atomic collisions: a new tool to tackle the few-body dynamics . . . . . . . . . . . 813--820 Priya Sony and Alok Shukla A general purpose Fortran 90 electronic structure program for conjugated systems using Pariser--Parr--Pople model . . . . 821--830 I. V. Grossu and D. Felea and C. Besliu and Al. Jipa and C. C. Bordeianu and E. Stan and T. Esanu A new version of Visual [Basic] tool for estimating the fractal dimension of images . . . . . . . . . . . . . . . . . 831--832 David Eriksson and Johan Rathsman and Oscar Stål 2HDMC --- two-Higgs-doublet model calculator . . . . . . . . . . . . . . . 833--834 M. Bazzotti and G. Carminati and A. Margiotta and M. Spurio An update of the generator of atmospheric muons from parametric formulas (MUPAGE) . . . . . . . . . . . 835--836 Anonymous Editorial Board . . . . . . . . . . . . ??
E. T. Meier and V. S. Lukin and U. Shumlak Spectral element spatial discretization error in solving highly anisotropic heat conduction equation . . . . . . . . . . 837--841 N. Mohankumar and A. Natarajan On an interesting variant of the IMT quadrature . . . . . . . . . . . . . . . 842--847 Bongsoo Jang Solving linear and nonlinear initial value problems by the projected differential transform method . . . . . 848--854 Ivan Duchemin and François Gygi A scalable and accurate algorithm for the computation of Hartree--Fock exchange . . . . . . . . . . . . . . . . 855--860 Zhen F. Tian and P. X. Yu High-order compact ADI (HOC--ADI) method for solving unsteady $2$D Schrödinger equation . . . . . . . . . . . . . . . . 861--868 Samuel F. Martins and Ricardo A. Fonseca and Luís O. Silva and Wei Lu and Warren B. Mori Numerical simulations of laser wakefield accelerators in optimal Lorentz frames 869--875 S. M. Abrarov and B. M. Quine and R. K. Jagpal High-accuracy approximation of the complex probability function by Fourier expansion of exponential multiplier . . 876--882 H. Tadano and Y. Kuramashi and T. Sakurai Application of preconditioned block BiCGGR to the Wilson--Dirac equation with multiple right-hand sides in lattice QCD . . . . . . . . . . . . . . 883--886 Marco Hülsmann and Jadran Vrabec and Astrid Maaß and Dirk Reith Assessment of numerical optimization algorithms for the development of molecular models . . . . . . . . . . . . 887--905 J. Sainio CUDAEASY --- a GPU accelerated cosmological lattice program . . . . . . 906--912 Monodeep Chakraborty and Jürgen Spitaler and Peter Puschnig and Claudia Ambrosch-Draxl ATAT@WIEN2k: An interface for cluster expansion based on the linearized augmented planewave method . . . . . . . 913--920 V. M. Grichine Geant 4 hadron elastic diffuse model . . 921--927 P. Hadjidoukas and C. Bousis and D. Emfietzoglou Parallelization of a Monte Carlo particle transport simulation code . . . 928--936 Jen-Hao Chen and Jinn-Liang Liu A numerical method for exact diagonalization of semiconductor quantum dot model . . . . . . . . . . . . . . . 937--946 Yongxiang Zhao and Aiguo Xiao Variational iteration method for singular perturbation initial value problems . . . . . . . . . . . . . . . . 947--956 Mehrdad Lakestani and Mehdi Dehghan Numerical solution of Riccati equation using the cubic B-spline scaling functions and Chebyshev cardinal functions . . . . . . . . . . . . . . . 957--966 M. E. Castro and A. Niño and C. Muñoz-Caro A metaheuristic approach to the optimal definition of molecule-fixed axes in rovibrational Hamiltonians . . . . . . . 967--977 Weiwei Cai and Laura Kranendonk and Tonghun Lee and Lin Ma Characterization of composite nanoparticles using an improved light scattering program for coated spheres 978--984 David Eriksson and Johan Rathsman and Oscar Stål Erratum for ``2HDMC --- two-Higgs-doublet model calculator'' [Comput. Phys. Commun. \bf 181 (2010) 189] . . . . . . . . . . . . . . . . . . 985--985 Anonymous Editorial Board . . . . . . . . . . . . ??
Anonymous A generic data structure for integrated modelling of tokamak physics and subsystems . . . . . . . . . . . . . . . 987--998 Hyungson Ki Level set method for two-phase incompressible flows under magnetic fields . . . . . . . . . . . . . . . . . 999--1007 A. Glazov and N. Raicevi\'c and A. Zhokin Fast simulation of showers in the H1 calorimeter . . . . . . . . . . . . . . 1008--1012 Jonathan R. Clausen and Daniel A. Reasor, Jr. and Cyrus K. Aidun Parallel performance of a lattice-Boltzmann/finite element cellular blood flow solver on the IBM Blue Gene/P architecture . . . . . . . . 1013--1020 Changbum Chun and Rathinasamy Sakthivel Homotopy perturbation technique for solving two-point boundary value problems --- comparison with other methods . . . . . . . . . . . . . . . . 1021--1024 Matthew R. Smith and Fang-An Kuo and Chih-Wei Hsieh and Jen-Perng Yu and Jong-Shinn Wu and Alex Ferguson Rapid optimization of blast wave mitigation strategies using Quiet Direct Simulation and Genetic Algorithm . . . . 1025--1036 Seong-Deog Yang and Hyun Geun Lee and Junseok Kim A phase-field approach for minimizing the area of triply periodic surfaces with volume constraint . . . . . . . . . 1037--1046 Minghui Wang Algorithm Q--LSQR for the least squares problem in quaternionic quantum theory 1047--1050 M. J. Rayson Rapid filtration algorithm to construct a minimal basis on the fly from a primitive Gaussian basis . . . . . . . . 1051--1056 C. Bekas and A. Curioni Very large scale wavefunction orthogonalization in Density Functional Theory electronic structure calculations 1057--1068 S. Satake and Y. Idomura and H. Sugama and T.-H. Watanabe Benchmark test of drift-kinetic and gyrokinetic codes through neoclassical transport simulations . . . . . . . . . 1069--1076 Florian Staub From superpotential to model files for FeynArts and CalcHep/CompHep . . . . . . 1077--1086 Aleksey M. Serebrennikov A novel semi-analytic method for the analysis of scattering by dielectric objects immersed in uniform media . . . 1087--1095 K. Parand and Mehdi Dehghan and A. R. Rezaei and S. M. Ghaderi An approximation algorithm for the solution of the nonlinear Lane--Emden type equations arising in astrophysics using Hermite functions collocation method . . . . . . . . . . . . . . . . . 1096--1108 Shamsul Qamar and Sidrah Mudasser A kinetic flux-vector splitting method for the shallow water magnetohydrodynamics . . . . . . . . . . 1109--1122 A. R. Samana and F. Krmpoti\'c and C. A. Bertulani QRAP: a numerical code for projected (Q)uasiparticle (RA)ndom (P)hase approximation . . . . . . . . . . . . . 1123--1135 B. Gebremariam and T. Duguet and S. K. Bogner Symbolic integration of a product of two spherical Bessel functions with an additional exponential and polynomial factor . . . . . . . . . . . . . . . . . 1136--1143 Chao-Hsi Chang and Jian-Xiong Wang and Xing-Gang Wu GENXICC2.0: An upgraded version of the generator for hadronic production of double heavy baryons $ \Xi c c $, $ \Xi b c $, and $ \Xi b b $ . . . . . . . . . 1144--1149 Benzhuo Lu and Xiaolin Cheng and Jingfang Huang and J. Andrew McCammon AFMPB: An adaptive fast multipole Poisson--Boltzmann solver for calculating electrostatics in biomolecular systems . . . . . . . . . . 1150--1160 C. Carasco MCNP Output Data Analysis with ROOT (MODAR) . . . . . . . . . . . . . . . . 1161--1166 B. Gebremariam and S. K. Bogner and T. Duguet Symbolic computation of the Hartree--Fock energy from a chiral EFT three-nucleon interaction at N$^2$ LO 1167--1177 Anonymous Editorial Board . . . . . . . . . . . . ??
C. Manuali and A. Lagan\`a and S. Rampino GriF: a Grid framework for a Web Service approach to reactive scattering . . . . 1179--1185 A. V. Wolkov and N. B. Petrovskaya Higher order discontinuous Galerkin method for acoustic pulse problem . . . 1186--1194 Francisco de la Hoz and Fernando Vadillo An integrating factor for nonlinear Dirac equations . . . . . . . . . . . . 1195--1203 A. D'Angola and G. Coppa and M. Capitelli and C. Gorse and G. Colonna An efficient energy-conserving numerical model for the electron energy distribution function in the presence of electron-electron collisions . . . . . . 1204--1211 I. M. Sobol' and S. Kucherenko A new derivative based importance criterion for groups of variables and its link with the global sensitivity indices . . . . . . . . . . . . . . . . 1212--1217 F. P. Fernandes and F. W. S. Lima and J. A. Plascak Blume--Capel model on directed and undirected small-world Voronoi--Delaunay random lattices . . . . . . . . . . . . 1218--1223 A. Golbabai and M. M. Arabshahi A numerical method for diffusion-convection equation using high-order difference schemes . . . . . 1224--1230 Yaming Chen and Huajun Zhu and Songhe Song Multi-symplectic splitting method for the coupled nonlinear Schrödinger equation . . . . . . . . . . . . . . . . 1231--1241 Andrei Bourchtein and Ludmila Bourchtein On iterated Crank--Nicolson methods for hyperbolic and parabolic equations . . . 1242--1250 Th. Monovasilis and Z. Kalogiratou and T. E. Simos Symplectic partitioned Runge--Kutta methods with minimal phase-lag . . . . . 1251--1254 Mehdi Dehghan and Rezvan Salehi Solution of a nonlinear time-delay model in biology via semi-analytical approaches . . . . . . . . . . . . . . . 1255--1265 Reza Mokhtari and Maryam Mohammadi Numerical solution of GRLW equation using sinc-collocation method . . . . . 1266--1274 Omar Ramadan Addendum to: ``A FDTD analysis on magnetized plasma of Epstein distribution and reflection calculation'' [Computer Physics Communications \bf 180 (1) (2009) 55--60]: a short comment on the equivalence of the shift-operator FDTD method and the bilinear frequency approximation technique for modeling dispersive electromagnetic applications 1275--1276 A. Arbey and F. Mahmoudi SuperIso Relic: a program for calculating relic density and flavor physics observables in supersymmetry . . 1277--1292 C. Studerus Reduze --- Feynman integral reduction in C++ . . . . . . . . . . . . . . . . . . 1293--1300 T. Reiter Optimising code generation with haggies 1301--1331 A. I. Ogoyski and S. Kawata and P. H. Popov Code OK3 --- An upgraded version of OK2 with beam wobbling function . . . . . . 1332--1333 Anonymous Editorial Board . . . . . . . . . . . . ??
V. Ledoux and M. Van Daele Solving Sturm--Liouville problems by piecewise perturbation methods, revisited . . . . . . . . . . . . . . . 1335--1345 Julián Rincón and D. J. García and K. Hallberg Improved parallelization techniques for the density matrix renormalization group 1346--1351 Toshiaki Kaneko and Takahiro Ueda A geometric method of sector decomposition . . . . . . . . . . . . . 1352--1361 S. Stavroyiannis and T. E. Simos A nonlinear explicit two-step fourth algebraic order method of order infinity for linear periodic initial value problems . . . . . . . . . . . . . . . . 1362--1368 Linghua Kong and Jingjing Zhang and Ying Cao and Yali Duan and Hong Huang Semi-explicit symplectic partitioned Runge--Kutta Fourier pseudo-spectral scheme for Klein--Gordon--Schrödinger equations . . . . . . . . . . . . . . . 1369--1377 Jacques C. R. Bloch and Tobias Breu and Andreas Frommer and Simon Heybrock and Katrin Schäfer and Tilo Wettig Short-recurrence Krylov subspace methods for the overlap Dirac operator at nonzero chemical potential . . . . . . . 1378--1387 Rafael B. Frigori Universality in short-time critical gluodynamics with heat-bath-inspired algorithms . . . . . . . . . . . . . . . 1388--1391 Mehrdad Lakestani and Mehdi Dehghan Collocation and finite difference-collocation methods for the solution of nonlinear Klein--Gordon equation . . . . . . . . . . . . . . . . 1392--1401 Toni Giorgino and M. J. Harvey and Gianni de Fabritiis Distributed computing as a virtual supercomputer: Tools to run and manage large-scale BOINC simulations . . . . . 1402--1409 Mehdi Dehghan and Arezou Ghesmati Application of the dual reciprocity boundary integral equation technique to solve the nonlinear Klein--Gordon equation . . . . . . . . . . . . . . . . 1410--1418 M. Tentyukov and J. A. M. Vermaseren The multithreaded version of FORM . . . 1419--1427 M. J. Pueschel and T. Dannert and F. Jenko On the role of numerical dissipation in gyrokinetic Vlasov simulations of plasma microturbulence . . . . . . . . . . . . 1428--1437 Yago Ascasibar Estimating multidimensional probability fields using the Field Estimator for Arbitrary Spaces (FiEstAS) with applications to astrophysics . . . . . . 1438--1443 S. Bianchi and R. Di Leonardo Real-time optical micro-manipulation using optimized holograms generated on the GPU . . . . . . . . . . . . . . . . 1444--1448 Christoph Junghans and Simón Poblete A reference implementation of the adaptive resolution scheme in ESPResSo 1449--1454 Masayuki Toyoda and Taisuke Ozaki LIBERI: Library for numerical evaluation of electron-repulsion integrals . . . . 1455--1463 I. V. Grossu and C. Besliu and Al. Jipa and C. C. Bordeianu and D. Felea and E. Stan and T. Esanu Code C# for chaos analysis of relativistic many-body systems . . . . . 1464--1470 M. E. Castro and A. Niño and C. Muñoz-Caro Heuristic computation of the rovibrational $G$ matrix in optimized molecule-fixed axes. Gmat 2.1 . . . . . 1471--1475 Anonymous Editorial Board . . . . . . . . . . . . ??
M. Valiev and E. J. Bylaska and N. Govind and K. Kowalski and T. P. Straatsma and H. J. J. Van Dam and D. Wang and J. Nieplocha and E. Apra and T. L. Windus and W. A. de Jong NWChem: a comprehensive and scalable open-source solution for large scale molecular simulations . . . . . . . . . 1477--1489 M. Honda Simulation technique of free-boundary equilibrium evolution in plasma ramp-up phase . . . . . . . . . . . . . . . . . 1490--1500 C. A. Duarte Convergence and instability of iterative procedures on the one-dimensional Schrödinger--Poisson problem . . . . . . 1501--1509 Ian Mondragon-Shem and Boris A. Rodríguez and Francisco E. López Efficient calculation of Coulomb matrix elements for bilayers of confined charge carriers with arbitrary spatial separation . . . . . . . . . . . . . . . 1510--1516 M. A. Clark and R. Babich and K. Barros and R. C. Brower and C. Rebbi Solving lattice QCD systems of equations using mixed precision solvers on GPUs 1517--1528 Feng-Nan Hwang and Shang-Rong Cai and Yun-Long Shao and Jong-Shinn Wu Parallel Newton--Krylov--Schwarz algorithms for the three-dimensional Poisson--Boltzmann equation in numerical simulation of colloidal particle interactions . . . . . . . . . . . . . . 1529--1537 Yonglei Fang and Qinghong Li and Xinyuan Wu Extended RKN methods with FSAL property for oscillatory systems . . . . . . . . 1538--1548 Benjamin Block and Peter Virnau and Tobias Preis Multi-GPU accelerated multi-spin Monte Carlo simulations of the $2$D Ising model . . . . . . . . . . . . . . . . . 1549--1556 Robert Hammerling and Othmar Koch and Christa Simon and Ewa B. Weinmüller Numerical solution of singular ODE eigenvalue problems in electronic structure computations . . . . . . . . . 1557--1561 R. G. M. van der Sman MRT Lattice Boltzmann schemes for confined suspension flows . . . . . . . 1562--1569 Gunnar S. Bali and Sara Collins and Andreas Schäfer Effective noise reduction techniques for disconnected loops in Lattice QCD . . . 1570--1583 G. M. Doctors and M. D. Mazzeo and P. V. Coveney A computationally efficient method for simulating fluid flow in elastic pipes in three dimensions . . . . . . . . . . 1584--1592 S. Ask and I. V. Akin and L. Benucci and A. De Roeck and M. Goebel and J. Haller Real emission and virtual exchange of gravitons and unparticles in Pythia8 . . 1593--1604 Gaurav Khanna and Justin McKennon Numerical modeling of gravitational wave sources accelerated by OpenCL . . . . . 1605--1611 Anonymous A proposal for a standard interface between Monte Carlo tools and one-loop programs . . . . . . . . . . . . . . . . 1612--1622 Andriy O. Lyakhov and Artem R. Oganov and Mario Valle How to predict very large and complex crystal structures . . . . . . . . . . . 1623--1632 Bernie D. Shizgal and Raouf Dridi Maple code for the calculation of the matrix elements of the Boltzmann collision operators for mixtures . . . . 1633--1640 B. G. Carlsson and J. Dobaczewski and J. Toivanen and P. Veselý Solution of self-consistent equations for the N$^3$ LO nuclear energy density functional in spherical symmetry. The program hosphe (v1.02) . . . . . . . . . 1641--1657 Xinyuan Wu Erratum to ``Extended RKN-type methods for numerical integration of perturbed oscillators'' [Computer Physics Communications \bf 180 (2009) 1777--1794] . . . . . . . . . . . . . . 1658--1658 S. Nath Erratum to ``TERS v2.0: An improved version of TERS'' [Comput. Phys. Commun. \bf 180 (2009) 2392] . . . . . . . . . . 1659--1659 Anonymous Editorial Board . . . . . . . . . . . . ??
J. A. Breslau and G. Y. Fu Implementation of an implicit shear Alfvén operator in the M3D code . . . . . 1661--1670 Pablo M. Dupuy and H. F. Svendsen and Luciano E. Patruno and Hugo A. Jakobsen Finite-difference stable stencils based on least-square quadric fitting . . . . 1671--1681 Wan-Qing Li and Tang Ying and Wan Jian and Dong-Jin Yu Comparison research on the neighbor list algorithms: Verlet table and linked-cell 1682--1686 Larry A. Viehland and Yongbin Chang Transport cross sections for collisions between particles . . . . . . . . . . . 1687--1696 Jie Cheng and Yanqing Hu and Zengru Di and Ying Fan Local adaptive mechanism and hierarchic social entropy in opinion formation on complex networks . . . . . . . . . . . . 1697--1701 Ma\lgorzata J. Krawczyk Application of the differential equations method for identifying communities in sparse networks . . . . . 1702--1706 R. G. Edgar and M. A. Clark and K. Dale and D. A. Mitchell and S. M. Ord and R. B. Wayth and H. Pfister and L. J. Greenhill Enabling a high throughput real time data pipeline for a large radio telescope array with GPUs . . . . . . . 1707--1714 Jakub T. Mo\'scicki and Maciej Wo\'s and Massimo Lamanna and Philippe de Forcrand and Owe Philipsen Lattice QCD thermodynamics on the Grid 1715--1726 C.-S. Chien and S.-L. Chang and Biao Wu Two-stage continuation algorithms for Bloch waves of Bose--Einstein condensates in optical lattices . . . . 1727--1737 L. Gr. Ixaru New numerical method for the eigenvalue problem of the $2$D Schrödinger equation 1738--1742 A. V. Snytnikov and V. A. Vshivkov and W. J. Goedheer Adaptive mass alteration to model ion-ion recombination in a Particle-in-Cell simulation of silane radio-frequency discharges . . . . . . . 1743--1749 Michael Watson and Ken-Ichi Nishikawa A method for incorporating the Kerr--Schild metric in electromagnetic particle-in-cell code . . . . . . . . . 1750--1757 S. Belov and L. Dudko and D. Kekelidze and A. Sherstnev HepML, an XML-based format for describing simulated data in high energy physics . . . . . . . . . . . . . . . . 1758--1768 A. V. Nesterenko and C. Simolo QCDMAPT: Program package for Analytic approach to QCD . . . . . . . . . . . . 1769--1775 Pietro Asinari Nonlinear Boltzmann equation for the homogeneous isotropic case: Minimal deterministic Matlab program . . . . . . 1776--1788 Wafaa M. Fawzy A code for analysis of the fine structure in near-rigid weakly-bonded open-shell complexes that consist of a diatomic radical in a $^3 \Sigma $ state and a closed-shell molecule . . . . . . 1789--1801 K. Hasegawa and S. Moch and P. Uwer AutoDipole --- Automated generation of dipole subtraction terms . . . . . . . . 1802--1817 S. Stamatiadis and S. C. Farantos auto\_deriv: Tool for automatic differentiation of a Fortran code . . . 1818--1819 Anonymous Editorial Board . . . . . . . . . . . . ??
James Tickner Monte Carlo simulation of X-ray and gamma-ray photon transport on a graphics-processing unit . . . . . . . . 1821--1832 Higinio Ramos and Cesáreo Lorenzo Review of explicit Falkner methods and its modifications for solving special second-order I.V.P.s . . . . . . . . . . 1833--1841 J. E. Macías-Díaz On the simulation of the energy transmission in the forbidden band-gap of a spatially discrete double sine--Gordon system . . . . . . . . . . 1842--1849 Xiaofan Li and Tong Zhu and Meigen Zhang and Guihua Long Seismic scalar wave equation with variable coefficients modeling by a new convolutional differentiator . . . . . . 1850--1858 N. Mohankumar and Tucker Carrington, Jr. A new approach for determining the time step when propagating with the Lanczos algorithm . . . . . . . . . . . . . . . 1859--1861 Marc Torrent and N. A. W. Holzwarth and François Jollet and David Harris and Nicholas Lepley and Xiao Xu Electronic structure packages: Two implementations of the projector augmented wave (PAW) formalism . . . . . 1862--1867 R. Jalilian Non-polynomial spline method for solving Bratu's problem . . . . . . . . . . . . 1868--1872 Xinyuan Wu and Xiong You and Wei Shi and Bin Wang ERKN integrators for systems of oscillatory second-order differential equations . . . . . . . . . . . . . . . 1873--1887 Jan Kunes and Ryotaro Arita and Philipp Wissgott and Alessandro Toschi and Hiroaki Ikeda and Karsten Held Wien2wannier: From linearized augmented plane waves to maximally localized Wannier functions . . . . . . . . . . . 1888--1895 Gary A. Huber and J. Andrew McCammon Browndye: a software package for Brownian dynamics . . . . . . . . . . . 1896--1905 Ajay Rawat and N. Mohankumar Milne, a routine for the numerical solution of Milne's problem . . . . . . 1906--1910 Natan Osterman TweezPal --- Optical tweezers analysis and calibration software . . . . . . . . 1911--1916 Douglas M. Gingrich Monte Carlo event generator for black hole production and decay in proton-proton collisions --- QBH version 1.02 . . . . . . . . . . . . . . . . . . 1917--1924 Jean-Luc Lamotte and Jean-Marie Chesneaux and Fabienne Jézéquel CADNA\_C: a version of CADNA for use with C or C++ programs . . . . . . . . . 1925--1926 Fabienne Jézéquel and Jean-Marie Chesneaux and Jean-Luc Lamotte A new version of the CADNA library for estimating round-off error propagation in Fortran programs . . . . . . . . . . 1927--1928 Anonymous Editorial Board . . . . . . . . . . . . ??
E. Ramos and J. E. Roman and S. Cardona-Serra and J. M. Clemente-Juan Parallel implementation of the MAGPACK package for the analysis of high-nuclearity spin clusters . . . . . 1929--1940 R. Pittau Testing and improving the numerical accuracy of the NLO predictions . . . . 1941--1946 Akbar Mohebbi and Mehdi Dehghan High-order scheme for determination of a control parameter in an inverse problem from the over-specified data . . . . . . 1947--1954 Xinyuan Wu and Bin Wang Multidimensional adapted Runge--Kutta--Nyström methods for oscillatory systems . . . . . . . . . . 1955--1962 J. Francés and C. Neipp and M. Pérez-Molina and A. Beléndez Rigorous interference and diffraction analysis of diffractive optic elements using the finite-difference time-domain method . . . . . . . . . . . . . . . . . 1963--1973 Weiwei Cai and Lin Ma Comparison of approaches based on optimization and algebraic iteration for binary tomography . . . . . . . . . . . 1974--1981 M. Carrettoni and O. Cremonesi Generation of noise time series with arbitrary power spectrum . . . . . . . . 1982--1985 Nobuyuki Masuda and Takashige Sugie and Tomoyoshi Ito and Shinjiro Tanaka and Yu Hamada and Shin-ichi Satake and Tomoaki Kunugi and Kazuho Sato Special purpose computer system with highly parallel pipelines for flow visualization using holography technology . . . . . . . . . . . . . . . 1986--1989 Ali Shokri and Mehdi Dehghan A Not-a-Knot meshless method using radial basis functions and predictor-corrector scheme to the numerical solution of improved Boussinesq equation . . . . . . . . . . 1990--2000 J. Ambia-Garrido and Arnold Vainrub and B. Montgomery Pettitt A model for structure and thermodynamics of ssDNA and dsDNA near a surface: a coarse grained approach . . . . . . . . 2001--2007 Emily M. Ryan and Alexandre M. Tartakovsky and Cristina Amon A novel method for modeling Neumann and Robin boundary conditions in smoothed particle hydrodynamics . . . . . . . . . 2008--2023 Ji Qiang and Xiaoye Li Particle-field decomposition and domain decomposition in parallel particle-in-cell beam dynamics simulation . . . . . . . . . . . . . . . 2024--2034 Magdalena Mierzwiczak and Jan Adam Kolodziej Application of the method of fundamental solutions and radial basis functions for inverse transient heat source problem 2035--2043 M. Calvo and J. M. Franco and J. I. Montijano and L. Rández Symmetric and symplectic exponentially fitted Runge--Kutta methods of high order . . . . . . . . . . . . . . . . . 2044--2056 Tian Qiu and Tarik Hadzibeganovic and Guang Chen and Li-Xin Zhong and Xiao-Run Wu Cooperation in the snowdrift game on directed small-world networks under self-questioning and noisy conditions 2057--2062 Spencer E. Olson and Andrew J. Christlieb and Fredrik K. Fatemi PID feedback for load-balanced parallel gridless DSMC . . . . . . . . . . . . . 2063--2071 Edoardo Patelli and Helmut J. Pradlwarter and Gerhart I. Schuëller Global sensitivity of structural variability by random sampling . . . . . 2072--2081 William J. Menz and Matthew J. Penna and Mark J. Biggs TNAMD: Implementation of TIGER2 in NAMD 2082--2085 Min Hyung Cho and Wei Cai A Wideband Fast Multipole Method for the two-dimensional complex Helmholtz equation . . . . . . . . . . . . . . . . 2086--2090 Barry I. Schneider and Javier Segura and Amparo Gil and Xiaoxu Guan and Klaus Bartschat A new Fortran 90 program to compute regular and irregular associated Legendre functions . . . . . . . . . . . 2091--2097 Liang-You Peng and Qihuang Gong An accurate Fortran code for computing hydrogenic continuum wave functions at a wide range of parameters . . . . . . . . 2098--2101 Arnaud Marmier and Zoe A. D. Lethbridge and Richard I. Walton and Christopher W. Smith and Stephen C. Parker and Kenneth E. Evans ElAM: a computer program for the analysis and representation of anisotropic elastic properties . . . . . 2102--2115 Ján Busa and Shura Hayryan and Chin-Kun Hu and Jaroslav Skrivánek and Ming-Chya Wu CAVE: a package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins . . . . . 2116--2125 Sergio Davis and Claudia Loyola and Felipe González and Joaquín Peralta Las Palmeras Molecular Dynamics: a flexible and modular molecular dynamics code . . . . . . . . . . . . . . . . . . 2126--2139 Jesse Noffsinger and Feliciano Giustino and Brad D. Malone and Cheol-Hwan Park and Steven G. Louie and Marvin L. Cohen EPW: a program for calculating the electron-phonon coupling using maximally localized Wannier functions . . . . . . 2140--2148 Martin Kröger and Markus Hütter Automated symbolic calculations in nonequilibrium thermodynamics . . . . . 2149--2157 G. von Winckel and A. Borzi` QUCON: a fast Krylov--Newton code for dipole quantum control problems . . . . 2158--2163 Scott Rostrup and Hans De Sterck Parallel hyperbolic PDE simulation on clusters: Cell versus GPU . . . . . . . 2164--2179 J. Rosiek and P. H. Chankowski and A. Dedes and S. Jäger and P. Tanedo SUSY\_FLAVOR: a computational tool for FCNC and CP-violating processes in the MSSM . . . . . . . . . . . . . . . . . . 2180--2205 Bo Zhang and Jingfang Huang and Nikos P. Pitsianis and Xiaobai Sun Revision of FMM--Yukawa: An adaptive fast multipole method for screened Coulomb interactions . . . . . . . . . . 2206--2207 Linda Hung and Chen Huang and Ilgyou Shin and Gregory S. Ho and Vincent L. Lign\`eres and Emily A. Carter Introducing PROFESS 2.0: a parallelized, fully linear scaling program for orbital-free density functional theory calculations . . . . . . . . . . . . . . 2208--2209 C. Carasco MCNP output data analysis with ROOT (MODAR) . . . . . . . . . . . . . . . . 2210--2211 Peter Koval and J. D. Talman Update of spherical Bessel transform: FFTW and OpenMP . . . . . . . . . . . . 2212--2213 Anonymous Editorial Board . . . . . . . . . . . . ??
James J. Y. Hsu Preface . . . . . . . . . . . . . . . . 1--1 Kai Schneider and Salah Neffaa and Wouter J. T. Bos A pseudo-spectral method with volume penalisation for magnetohydrodynamic turbulence in confined domains . . . . . 2--7 Vítor Duarte Teodoro and Rui Gomes Neves Mathematical modelling in science and mathematics education . . . . . . . . . 8--10 A. S. Barnard Useful equations for modeling the relative stability of common nanoparticle morphologies . . . . . . . 11--13 Tak-San Ho and Herschel Rabitz and Shih-I Chu A general formulation of monotonically convergent algorithms in the control of quantum dynamics beyond the linear dipole interaction . . . . . . . . . . . 14--17 Dmitry A. Telnov and Shih-I Chu Time-dependent generalized pseudospectral method for accurate treatment of multiphoton processes of diatomic molecules in intense laser fields . . . . . . . . . . . . . . . . . 18--20 Xiao-Min Tong and Nobuyuki Toshima Time-dependent method in the laser-atom interactions . . . . . . . . . . . . . . 21--23 Huey-Wen Lin and Saul D. Cohen and Liuming Liu and Nilmani Mathur and Kostas Orginos and Andre Walker-Loud Heavy-baryon spectroscopy from lattice QCD . . . . . . . . . . . . . . . . . . 24--26 A. P. Young and S. Knysh and V. N. Smelyanskiy The complexity of the Quantum Adiabatic Algorithm . . . . . . . . . . . . . . . 27--28 Hendrick W. de Haan and Michel G. Gauthier and Mykyta V. Chubynsky and Gary W. Slater The importance of introducing a waiting time for Lattice Monte Carlo simulations of a polymer translocation process . . . 29--32 Stefan Kesselheim and Marcello Sega and Christian Holm Applying ICC* to DNA translocation: Effect of dielectric boundaries . . . . 33--35 Chi-Tin Shih and Yun-Yin Cheng and Stephen A. Wells and Ching-Ling Hsu and Rudolf A. Römer Charge transport in cancer-related genes and early carcinogenesis . . . . . . . . 36--38 Chih-Kai Yang Exploring the interaction between the boron nitride nanotube and biological molecules . . . . . . . . . . . . . . . 39--42 I. V. Solovyev Realistic modeling of complex oxide materials . . . . . . . . . . . . . . . 43--45 Vidar Gudmundsson and Chi-Shung Tang and Cosmin Mihai Gainar and Valeriu Moldoveanu and Andrei Manolescu Time-dependent magnetotransport in semiconductor nanostructures via the generalized master equation . . . . . . 46--48 K. Hoshino and T. Yoshikawa and S. Munejiri Pressure-induced structural change from low-density to high-density amorphous ice by molecular-dynamics simulations 49--51 Tianxing Ma and Feiming Hu and Zhongbing Huang and Hai-Qing Lin Magnetic correlation in the Hubbard model on a honeycomb lattice . . . . . . 52--54 Dingping Li and B. Rosenstein and Shou Chen and H. H. Lin and D. Berco Glass transition and the replica symmetry breaking in vortex matter: MC study . . . . . . . . . . . . . . . . . 55--57 Shuji Munejiri and Fuyuki Shimojo and Kozo Hoshino Real-space investigation of a transverse wave in a liquid system generated by a molecular-dynamics simulation . . . . . 58--61 K. H. Tsai and Ten-Ming Wu Entropy of a model for liquid Ga: Contribution due to Friedel oscillations 62--64 Chi-Shung Tang and Kristinn Torfason and Vidar Gudmundsson Magnetotransport in a time-modulated double quantum point contact system . . 65--67 C. H. Lee and S. C. Chen and C. K. Yang and W. S. Su and M. F. Lin Low-energy electronic structures of nanotube-nanoribbon hybrid systems . . . 68--70 Chia-Hei Yang and Ching-Ling Hsu and Nan-Yow Chen and Chi-Tin Shih Temporal dynamics of site percolation in nanoparticle assemblies . . . . . . . . 71--73 Feiming Hu and Tianxing Ma and Hai-Qing Lin Numerical study of geometrical frustration: From square to triangular lattices . . . . . . . . . . . . . . . . 74--76 Jen-Hsien Wong and Bi-Ru Wu and Ming-Fa Lin Electronic properties of rhombohedral graphite . . . . . . . . . . . . . . . . 77--80 R. F. Hung and D. Berco and I. Ya. Shapiro and B. Shapiro and B. Rosenstein Electrodynamics of type-II superconductor with periodic pinning array . . . . . . . . . . . . . . . . . 81--83 J. C. Tung and G. Y. Guo An ab initio study of the magnetic and electronic properties of Fe, Co, and Ni nanowires on Cu(001) surface . . . . . . 84--86 Shoichi Sakamoto and Hiroyoshi Tsuyuki and Mitsuyoshi Tomiya Stochastic mechanics of electron transfer in graphene . . . . . . . . . . 87--89 Naomi Hirayama and Akira Endo and Kazuhiro Fujita and Yasuhiro Hasegawa and Naomichi Hatano and Hiroaki Nakamura and Ryoen Shirasaki Temperature distribution in nano-devices under a strong magnetic field . . . . . 90--92 Tay-Rong Chang and Horng-Tay Jeng and Chen-Shiung Hsue Electronic structures of quasi-one-dimensional ferrimagnetic insulator Ca$_3$Co$_2$O$_6$ . . . . . . 93--95 Yiming Li and Hui-Wen Cheng and Ming-Hung Han Quantum hydrodynamic simulation of discrete-dopant fluctuated physical quantities in nanoscale FinFET . . . . . 96--98 W. S. Su and B. R. Wu and T. C. Leung A first-principles study on the electromechanical effect of graphene nanoribbon . . . . . . . . . . . . . . . 99--102 Yoshiyuki Egami and Keita Yamada First-principles study on quantum-transport properties of single molecule depending on adsorption conditions . . . . . . . . . . . . . . . 103--105 C.-C. Chen and B. Moritz and C. J. Jia and S. Johnston and A. P. Sorini and L.-Q. Lee and K. Ko and T. P. Devereaux Numerical studies of photon-based spectroscopies on high-$ T_c $ superconductors . . . . . . . . . . . . 106--108 B. Moritz and T. P. Devereaux and J. K. Freericks Temporal response of nonequilibrium correlated electrons . . . . . . . . . . 109--111 H. C. Kao and M. Lewkowicz and Y. Korniyenko and B. Rosenstein Dynamical approach to ballistic transport in graphene . . . . . . . . . 112--114 N. Blümer and E. V. Gorelik Quantum Monte Carlo simulations of antiferromagnetism in ultracold fermions on optical lattices within real-space dynamical mean-field theory . . . . . . 115--118 Sabyasachi Kar and Y. K. Ho Resonance states of Ps$^-$ using correlated wave functions . . . . . . . 119--121 Arijit Ghoshal and Y. K. Ho Doubly excited resonance states of two-electron systems in exponential cosine-screened Coulomb potentials . . . 122--124 C. Y. Lin and Y. K. Ho The photoionization of excited hydrogen atom in plasmas . . . . . . . . . . . . 125--129 S. Paul and Y. K. Ho Solution of the generalized exponential cosine screened Coulomb potential . . . 130--133 M. Chane-Yook and J. Dubau Update of UCL computer codes for the calculation of fine-structure electron-atom collision cross-section 134--135 Ju-Tang Hsiao and Keh-Ning Huang Applications of the relativistic equation of motion to photoionization of Mg-like ions . . . . . . . . . . . . . . 136--139 Y.-M. Lee and T.-F. Jiang and Z.-Y. Su and J.-S. Wu Three-dimensional simulation of the femto-second pulsed laser interacting with a nitrogen molecule . . . . . . . . 140--142 M.-C. Wu and W.-C. Liu Non-perturbative time-dependent numerical simulation for electromagnetically induced transparency and slow light in three-level $ \Lambda $-type atoms . . . . . . . . . . . . . . 143--145 Ying-Jun Jin and Xiao-Min Tong and Nobuyuki Toshima Ionization of hydrogen molecular ions in an intense laser field via a resonant state . . . . . . . . . . . . . . . . . 146--148 Alexei Deinega and Ilya Valuev Long-time behavior of PML absorbing boundaries for layered periodic structures . . . . . . . . . . . . . . . 149--151 S. W. Chau and S. Y. Lu and P. J. Wang Modeling of axis-symmetric steam plasma flow in a non-transferred torch . . . . 152--154 Jang-Yu Hsu Relativistic theory of mode conversion at plasma frequency --- the finite difference time domain simulation . . . 155--157 Y. Nishimura A perturbation method for guiding center orbit following calculations in the presence of Coulomb collisions . . . . . 158--160 Chieh-Tsan Hung and Yuan-Ming Chiu and Feng-Nan Hwang and Jong-Shinn Wu Development of a parallel implicit solver of fluid modeling equations for gas discharges . . . . . . . . . . . . . 161--163 K.-W. Cheng and C.-T. Hung and M.-H. Chiang and F.-N. Hwang and J.-S. Wu One-dimensional simulation of nitrogen dielectric barrier discharge driven by a quasi-pulsed power source and its comparison with experiments . . . . . . 164--166 Y.-M. Chiu and C.-T. Hung and F.-N. Hwang and M.-H. Chiang and J.-S. Wu and S.-H. Chen Effect of plasma chemistry on the simulation of helium atmospheric-pressure plasmas . . . . . . 167--169 Matthew R. Smith and Chieh-Tsan Hung and Kun-Mo Lin and Jong-Shinn Wu and Jen-Perng Yu Development of a semi-implicit fluid modeling code using finite-volume method based on Cartesian grids . . . . . . . . 170--172 Xuefei Yuan and Stephen C. Jardin and David E. Keyes Moving grids for magnetic reconnection via Newton--Krylov methods . . . . . . . 173--176 Ying-Yi Lo and Chung-Ming Ko and Chih-Yueh Wang $3$D Magneto-hydrodynamic simulations of Parker instability with cosmic rays . . 177--179 Alexei Y. Pankin and Alex Pletzer and Srinath Vadlamani and John R. Cary and Ammar Hakim and Scott E. Kruger and Mahmood Miah and Thomas D. Rognlien and Svetlana Shasharina and Glenn Bateman and Arnold H. Kritz and Tariq Rafiq and FACETS team Simulation of anomalous transport in tokamaks using the FACETS code . . . . . 180--184 Jiann-wien Hsu and Ding-wei Huang Dynamics of citation distribution . . . 185--187 Gabriel Villalobos and Dorian L. Linero and José D. Muñoz A statistical model of fracture for a $2$D hexagonal mesh: The Cell Network Model of Fracture for the bamboo \em Guadua angustifolia . . . . . . . . . . 188--191 Susumu Fujiwara and Daiki Funaoka and Takashi Itoh and Masato Hashimoto Molecular dynamics simulation for phase behavior of amphiphilic solution . . . . 192--194 Chi-Tin Shih and Hsuan-Wen Lin and Ann-Shyn Chiang Statistical analysis and modeling of the temperature-dependent sleep behavior of drosophila . . . . . . . . . . . . . . . 195--197 J. L. Huang and H. J. Chen and H. C. Tseng The flow of a reversible ratchet . . . . 198--200 Hao-Yun Wu and Chung-I Chou and Jie-Jun Tseng A simple marriage model for the power-law behaviour in the frequency distributions of family names . . . . . 201--204 Yu-Cih Peng and Chung-I Chou Simulation of pedestrian flow through a ``T'' intersection: a multi-floor field cellular automata approach . . . . . . . 205--208 Chung-I Chou A Knowledge-based Evolution Algorithm approach to political districting problem . . . . . . . . . . . . . . . . 209--212 B. J. Huang and Ten-Ming Wu Numerical studies for localization-delocalization transition in vibrational spectra . . . . . . . . . 213--215 Moon-Yong Cha and Jae Woo Lee and Deok-Sun Lee and Doo Hwan Kim Wealth dynamics in world trade . . . . . 216--218 Jaewon Choi and Gyuchang Lim and Soo Yong Kim and Kyungsik Kim Information of group-correlations in Korean financial market . . . . . . . . 219--222 Nen Saito and Yukito Iba Probability of graphs with large spectral gap by multicanonical Monte Carlo . . . . . . . . . . . . . . . . . 223--225 Chien-Fu Chen and An-Chung Cheng and Yi-Duen Wang and Chai-Yu Lin Universal scaling functions of a dissipative Manna model . . . . . . . . 226--228 M. Hasegawa Positive role of glassy dynamics in finite-time optimization by threshold algorithms . . . . . . . . . . . . . . . 229--231 Chih-Hsien Huang and Jing-Nuo Wu and Szu-Cheng Cheng and Wen-Feng Hsieh The evolution of solitons in coupled resonator optical waveguides and photonic-crystal waveguides . . . . . . 232--236 Shin-ichi Tadaki Effects of fast noises on long-range correlations . . . . . . . . . . . . . . 237--239 Naohito Urakami and Junko Imada and Takashi Yamamoto Simulation of chain length recognition observed in formation of inclusion complex . . . . . . . . . . . . . . . . 240--242 Doo Hwan Kim and Moon-Yong Cha and Jae Woo Lee The persistence probability and the price-price correlation functions in the Korean stock market . . . . . . . . . . 243--244 Mitsuyoshi Tomiya and Hiroyoshi Tsuyuki and Shoichi Sakamoto Quantum fidelity and dynamical scar states on chaotic billiard system . . . 245--248 Yao-Chen Hung and Chin-Kun Hu Constructive role of noise in p53 regulatory network . . . . . . . . . . . 249--250 Akimasa Kitajima and Yukito Iba Multicanonical sampling of rare trajectories in chaotic dynamical systems . . . . . . . . . . . . . . . . 251--253 Ke-Jung Chen and Alexander Heger and Ann S. Almgren Multidimensional simulations of pair-instability supernovae . . . . . . 254--256 Masayuki Ohzeki and Hidetoshi Nishimori Quantum annealing with Jarzynski equality . . . . . . . . . . . . . . . . 257--259 Hui-Wen Cheng and Yiming Li and Jung-Yen Yang Investigation of Raman enhancement in hydrothermally roughened SERS-active substrates . . . . . . . . . . . . . . . 260--262 Hongsuk Yi Performance evaluation of GAIA supercomputer using NPB multi-zone benchmarks . . . . . . . . . . . . . . . 263--265 Chao-Tung Yang and Chih-Lin Huang and Cheng-Fang Lin Hybrid CUDA, OpenMP, and MPI parallel programming on multicore GPU clusters 266--269 Anonymous The advanced data searching system with AMGA at the Belle II experiment . . . . 270--273 Shinichi Miura A variational path integral molecular dynamics study of a solid helium-4 . . . 274--276 Soonwook Hwang and Hangi Kim and Seyong Kim Large-scale deployment of two-color QCD simulations on the grid using Ganga . . 277--279 Anonymous Computer Physics Communications --- List of Editors . . . . . . . . . . . . . . . iv--vi Anonymous Editorial Board . . . . . . . . . . . . ??
Laura E. Walizer and John F. Peters A bounding box search algorithm for DEM simulation . . . . . . . . . . . . . . . 281--288 B. M. Stupovski and J. V. Crnjanski and D. M. Gvozdi\'c Application of coordinate transformation and finite differences method in numerical modeling of quantum dash band structure . . . . . . . . . . . . . . . 289--298 Remi Baron and Philippe Boucaud and Jaume Carbonell and Vincent Drach and Federico Farchioni and Gregorio Herdoiza and Karl Jansen and Chris Michael and Istvan Montvay and Elisabetta Pallante and Olivier P\`ene and Siebren Reker and Carsten Urbach and Marc Wagner and Urs Wenger Computing K and D meson masses with $ N f = 2 + 1 + 1 $ twisted mass lattice QCD 299--316 Frédéric Wrobel and Frédéric Saigné MC--ORACLE: a tool for predicting Soft Error Rate . . . . . . . . . . . . . . . 317--321 R. D'Ambrosio and L. Gr. Ixaru and B. Paternoster Construction of the ef-based Runge--Kutta methods revisited . . . . . 322--329 Gian Luca Delzanno and John M. Finn The fluid dynamic approach to equidistribution methods for grid adaptation . . . . . . . . . . . . . . . 330--346 G. Zuccaro and G. Lapenta and F. Ferrero and G. Maizza Multiphase and multiphysics particle in cell simulation of soot deposition inside a diesel particulate filter single channel . . . . . . . . . . . . . 347--359 Min Hyung Cho and Haiyu Zheng and Yuehui Lu and YoungPak Lee and Wei Cai Improved rigorous coupled-wave analysis for polar magnetic gratings . . . . . . 360--365 Moussa Smadi and Derradji Bahloul A compact split step Padé scheme for higher-order nonlinear Schrödinger equation (HNLS) with power law nonlinearity and fourth order dispersion 366--371 David C. Lonie and Eva Zurek XtalOpt: An open-source evolutionary algorithm for crystal structure prediction . . . . . . . . . . . . . . . 372--387 Paolo Barletta COOL: a code for dynamic Monte Carlo simulation of molecular dynamics . . . . 388--399 Mohammad A. Charsooghi and Ehsan A. Akhlaghi and Sharareh Tavaddod and H. R. Khalesifard A Matlab program to calculate translational and rotational diffusion coefficients of a single particle . . . 400--408 Joel Ekstrand Lambda: a Mathematica package for operator product expansions in vertex algebras . . . . . . . . . . . . . . . . 409--418 A. E. Kramida The program LOPT for least-squares optimization of energy levels . . . . . 419--434 R. Kleiss and G. van den Oord CAMORRA: a C++ library for recursive computation of particle scattering amplitudes . . . . . . . . . . . . . . . 435--447 D. Sokolovski and E. Akhmatskaya and S. K. Sen Extracting $S$-matrix poles for resonances from numerical scattering data: Type-II Padé reconstruction . . . . 448--466 Tarcísio M. Rocha Filho and Annibal Figueiredo [SADE]: a Maple package for the symmetry analysis of differential equations . . . 467--476 Boaz Keren-Zur HidSecSOFTSUSY: Incorporating effects from hidden sectors in the numerical computation of the MSSM spectrum . . . . 477--484 Fabian Czerwinski and Lene B. Oddershede TimeSeriesStreaming.vi: LabVIEW program for reliable data streaming of large analog time series . . . . . . . . . . . 485--489 M. Botje QCDNUM: Fast QCD evolution and convolution . . . . . . . . . . . . . . 490--532 J. M. Badia and J. L. Movilla and J. I. Climente and M. Castillo and M. Marqués and R. Mayo and E. S. Quintana-Ortí and J. Planelles Large-scale linear system solver using secondary storage: Self-energy in hybrid nanostructures . . . . . . . . . . . . . 533--539 Ling Ti Kong and Colin Denniston and Martin H. Müser An improved version of the Green's function molecular dynamics method . . . 540--541 G. Opletal and T. C. Petersen and B. O'Malley and I. K. Snook and D. G. McCulloch and I. Yarovsky HRMC\_1.1: Hybrid Reverse Monte Carlo method with silicon and carbon potentials . . . . . . . . . . . . . . . 542--542 Anonymous Editorial Board . . . . . . . . . . . . ??
S. Boeck and C. Freysoldt and A. Dick and L. Ismer and J. Neugebauer The object-oriented DFT program library S/PHI/nX . . . . . . . . . . . . . . . . 543--554 Rodrigo Coura Torres and Andre Rabello dos Anjos and José Manoel de Seixas and Igor Soloviev Automatizing the online filter test management for a general-purpose particle detector . . . . . . . . . . . 555--563 W. W. Lee and T. G. Jenkins and S. Ethier A generalized weight-based particle-in-cell simulation scheme . . . 564--569 N. Mellet and W. A. Cooper and P. Popovich and L. Villard and S. Brunner Convolution and iterative methods applied to low-frequency waves in $3$D warm configurations . . . . . . . . . . 570--589 D. Romero-Laorden and O. Martínez-Graullera and C. J. Martín and M. Pérez and L. G. Ullate Field modelling acceleration on ultrasonic systems using graphic hardware . . . . . . . . . . . . . . . . 590--599 Miroslav Morhác and Vladislav Matousek Event sorting methods of $ \gamma $-ray spectroscopic data . . . . . . . . . . . 600--610 Ulrich Welling and Guido Germano Efficiency of linked cell algorithms . . 611--615 Huajun Zhu and Songhe Song and Yifa Tang Multi-symplectic wavelet collocation method for the nonlinear Schrödinger equation and the Camassa--Holm equation 616--627 N. Ferrando and M. A. Gosálvez and J. Cerdá and R. Gadea and K. Sato Octree-based, GPU implementation of a continuous cellular automaton for the simulation of complex, evolving surfaces 628--640 Viktor K. Decyk and Tajendra V. Singh Adaptable Particle-in-Cell algorithms for graphical processing units . . . . . 641--648 Zhen F. Tian A rational high-order compact ADI method for unsteady convection-diffusion equations . . . . . . . . . . . . . . . 649--662 Liang-Wu Cai On the computation of spherical Bessel functions of complex arguments . . . . . 663--668 Javier Ibáñez and Vicente Hernández Solving differential matrix Riccati equations by a piecewise-linearized method based on diagonal Padé approximants . . . . . . . . . . . . . . 669--678 T. F. Silva and M. N. Martins Statistical treatment of misalignments in particle accelerators . . . . . . . . 679--682 M. S. Zakynthinaki and R. O. Barakat and C. A. Cordente Martínez and J. Sampedro Molinuevo Stochastic optimization for the detection of changes in maternal heart rate kinetics during pregnancy . . . . . 683--691 Vadim Demchik Pseudo-random number generators for Monte Carlo simulations on ATI Graphics Processing Units . . . . . . . . . . . . 692--705 Hanquan Wang and Weibiao Xu An efficient numerical method for simulating the dynamics of coupling Bose--Einstein condensates in optical resonators . . . . . . . . . . . . . . . 706--718 A. G. Cunha-Netto and R. Dickman Critical behavior of hard-core lattice gases: Wang--Landau sampling with adaptive windows . . . . . . . . . . . . 719--725 Binh Trieu and Kristel Michielsen and Hans De Raedt Event-based simulation of light propagation in lossless dielectric media 726--734 V. Krasilnikov and D. Marocco and B. Esposito and M. Riva and Yu. Kaschuck Fast pulse detection algorithms for digitized waveforms from scintillators 735--738 Robert Fleischhaker and Jörg Evers A Maxwell--Schrödinger solver for quantum optical few-level systems . . . . . . . 739--747 M. Slawinska and S. Jadach MCdevelop --- a universal framework for stochastic simulations . . . . . . . . . 748--762 G. Bélanger and Neil D. Christensen and A. Pukhov and A. Semenov SLHAplus: a library for implementing extensions of the Standard Model . . . . 763--774 Markus Wallerberger and Katharina Igenbergs and Josef Schweinzer and Friedrich Aumayr Fast computation of close-coupling exchange integrals using polynomials in a tree representation . . . . . . . . . 775--778 N. Davidson and P. Golonka and T. Przedzi\'nski and Z. W\kas MC-TESTER v. 1.23: a universal tool for comparisons of Monte Carlo predictions for particle decays in high energy physics . . . . . . . . . . . . . . . . 779--789 A. V. Smirnov and V. A. Smirnov and M. Tentyukov FIESTA 2: Parallelizeable multiloop numerical calculations . . . . . . . . . 790--803 Abhishek K. Singh and Evgeni S. Penev and Boris I. Yakobson Armchair or Zigzag? A tool for characterizing graphene edge . . . . . . 804--807 Florian Staub Automatic calculation of supersymmetric renormalization group equations and loop corrections . . . . . . . . . . . . . . 808--833 Ioannis G. Tsoulos and Athanassios Stavrakoudis Eucb: a C++ program for molecular dynamics trajectory analysis . . . . . . 834--841 G. Bélanger and F. Boudjema and P. Brun and A. Pukhov and S. Rosier-Lees and P. Salati and A. Semenov Indirect search for dark matter with micrOMEGAs\_2.4 . . . . . . . . . . . . 842--856 Anonymous Editorial Board . . . . . . . . . . . . ??
José Juan Tapia and Roshan M. D'Souza Parallelizing the Cellular Potts Model on graphics processing units . . . . . . 857--865 M. Antuono and A. Colagrossi and S. Marrone and C. Lugni Propagation of gravity waves through an SPH scheme with numerical diffusive terms . . . . . . . . . . . . . . . . . 866--877 Jacques C. R. Bloch and Simon Heybrock A nested Krylov subspace method to compute the sign function of large complex matrices . . . . . . . . . . . . 878--889 Luis Cabellos and Isabel Campos and Enol Fernández-del-Castillo and Michal Owsiak and Bartek Palak and Marcin Plóciennik Scientific workflow orchestration interoperating HTC and HPC resources . . 890--897 W. Michael Brown and Peng Wang and Steven J. Plimpton and Arnold N. Tharrington Implementing molecular dynamics on hybrid high performance computers --- short range forces . . . . . . . . . . . 898--911 M. Jucker and J. P. Graves and W. A. Cooper and N. Mellet and T. Johnson and S. Brunner Integrated modeling for ion cyclotron resonant heating in toroidal systems . . 912--925 D. C. Rapaport Enhanced molecular dynamics performance with a programmable graphics processor 926--934 Zachary B. Walters Efficient wavefunction propagation by minimizing accumulated action . . . . . 935--939 Ya. A. Ilyushin and V. P. Budak Analysis of the propagation of the femtosecond laser pulse in the scattering medium . . . . . . . . . . . 940--945 Joachim Müller and Sven Simon and Uwe Motschmann and Josef Schüle and Karl-Heinz Glassmeier and Gavin J. Pringle A.I.K.E.F.: Adaptive hybrid model for space plasma simulations . . . . . . . . 946--966 Graziela Grise and Michael Meyer-Hermann Surface reconstruction using Delaunay triangulation for applications in life sciences . . . . . . . . . . . . . . . . 967--977 Francesca Campolongo and Andrea Saltelli and Jessica Cariboni From screening to quantitative sensitivity analysis. A unified approach 978--988 Alison Barros and Euler de Vilhena Garcia and Rafael Morgado Silva Simulation of stochastic processes using graphics hardware . . . . . . . . . . . 989--993 Shamsul Qamar and Muhammad Yousaf and Sidrah Mudasser The space--time CE/SE method for solving ultra-relativistic Euler equations . . . 994--1004 R. Kleiber and R. Hatzky and A. Könies and K. Kauffmann and P. Helander An improved control-variate scheme for particle-in-cell simulations with collisions . . . . . . . . . . . . . . . 1005--1012 S. K. Lai and Yu-Ting Lin and P. J. Hsu and S. A. Cheong Dynamical study of metallic clusters using the statistical method of time series clustering . . . . . . . . . . . 1013--1026 Jae Hwan Lee and Seung-Yeon Kim and Julian Lee Parallel algorithm for calculation of the exact partition function of a lattice polymer . . . . . . . . . . . . 1027--1033 M. Aliev and H. Lacker and U. Langenfeld and S. Moch and P. Uwer and M. Wiedermann HATHOR --- HAdronic Top and Heavy quarks crOss section calculatoR . . . . . . . . 1034--1046 Alejandro Lorca and Eduardo Huedo and Ignacio M. Llorente The Grid[Way] Job Template Manager, a tool for parameter sweeping . . . . . . 1047--1060 Matthew O. Zacate and William E. Evenson Stochastic hyperfine interactions modeling library . . . . . . . . . . . . 1061--1077 Emanuel Gull and Philipp Werner and Sebastian Fuchs and Brigitte Surer and Thomas Pruschke and Matthias Troyer Continuous-time quantum Monte Carlo impurity solvers . . . . . . . . . . . . 1078--1082 Niall Moran and Graham Kells and Jiri Vala Diagonalisation of quantum observables on regular lattices and general graphs 1083--1092 M. J. Harvey and G. De Fabritiis Swan: a tool for porting CUDA programs to OpenCL . . . . . . . . . . . . . . . 1093--1099 Alexis Diaz-Torres PLATYPUS: a code for reaction dynamics of weakly-bound nuclei at near-barrier energies within a classical dynamical model . . . . . . . . . . . . . . . . . 1100--1104 Anonymous Editorial Board . . . . . . . . . . . . ??
Sergio M. Davis and Anatoly B. Belonoshko and Börje Johansson SearchFill: a stochastic optimization code for detecting atomic vacancies in crystalline and non-crystalline systems 1105--1110 Yali Liu and Changjun Hu and Chongchong Zhao Efficient parallel implementation of Ewald summation in molecular dynamics simulations on multi-core platforms . . 1111--1119 Peter H. Colberg and Felix Höfling Highly accelerated simulations of glassy dynamics using GPUs: Caveats on limited floating-point precision . . . . . . . . 1120--1129 J. B. Santos-Filho and J. A. Plascak Monte Carlo simulations of the site-diluted three-dimensional XY model 1130--1133 Ram K. Pandey and Om. P. Singh and Vipul K. Baranwal An analytic algorithm for the space--time fractional advection-dispersion equation . . . . . 1134--1144 Darío M. Mitnik and Flavio D. Colavecchia and Gustavo Gasaneo and Juan M. Randazzo Computational methods for Generalized Sturmians basis . . . . . . . . . . . . 1145--1155 A. E. Vladimirov and S. W. Digel and G. Jóhannesson and P. F. Michelson and I. V. Moskalenko and P. L. Nolan and E. Orlando and T. A. Porter and A. W. Strong GALPROP WebRun: An Internet-based service for calculating galactic cosmic ray propagation and associated photon emissions . . . . . . . . . . . . . . . 1156--1161 Shoji Hamada GPU-accelerated indirect boundary element method for voxel model analyses with fast multipole method . . . . . . . 1162--1168 M. S. Reis Models for zero-dimensional molecular magnets . . . . . . . . . . . . . . . . 1169--1177 Shin-ichi Satake and Gaku Sorimachi and Nobuyuki Masuda and Tomoyoshi Ito Special-purpose computer for Particle Image Velocimetry . . . . . . . . . . . 1178--1182 Torbjörn Björkman CIF2Cell: Generating geometries for electronic structure programs . . . . . 1183--1186 C. David Pruett and William H. Ingham and Ralph D. Herman Parallel implementation of an adaptive and parameter-free $N$-body integrator 1187--1198 Liqiang Wei Direct and exact compute and table of entire 3$j$, 6$j$, and 9$j$ symbols: Erratum to CPC \bf 120 (1999) 222--230 1199--1199 Anonymous Editorial Board . . . . . . . . . . . . ??
Ki-Hwan Kim and KyoungHo Kim and Q-Han Park Performance analysis and optimization of three-dimensional FDTD on GPU using roofline model . . . . . . . . . . . . . 1201--1207 Mark G. Beckett and Paul Coddington and Bálint Joó and Chris M. Maynard and Dirk Pleiter and Osamu Tatebe and Tomoteru Yoshie Building the International Lattice Data Grid . . . . . . . . . . . . . . . . . . 1208--1214 Z.-C. Li and S.-Y. Chen and C.-S. Chien and H.-S. Chen A spectral collocation method for a rotating Bose--Einstein condensation in optical lattices . . . . . . . . . . . . 1215--1234 Brecht Verstichel and Helen van Aggelen and Dimitri Van Neck and Patrick Bultinck and Stijn De Baerdemacker A primal-dual semidefinite programming algorithm tailored to the variational determination of the two-body density matrix . . . . . . . . . . . . . . . . . 1235--1244 Taisuke Ozaki and Masayuki Toyoda Accurate finite element method for atomic calculations based on density functional theory and Hartree--Fock method . . . . . . . . . . . . . . . . . 1245--1252 R. Bonciani and G. Degrassi and A. Vicini On the generalized harmonic polylogarithms of one complex variable 1253--1264 M. Bernaschi and G. Parisi and L. Parisi Benchmarking GPU and CPU codes for Heisenberg spin glass over-relaxation 1265--1271 Rio Yokota and Jaydeep P. Bardhan and Matthew G. Knepley and L. A. Barba and Tsuyoshi Hamada Biomolecular electrostatics using a fast multipole BEM on up to 512 GPUs and a billion unknowns . . . . . . . . . . . . 1272--1283 Mehdi Dehghan and Rooholah Jazlanian A high-order non-oscillatory central scheme with non-staggered grids for hyperbolic conservation laws . . . . . . 1284--1294 Guoxin Cheng and Lie Liu Monte Carlo modeling of secondary electron emission and its incorporation in particle simulations of electron-surface interaction . . . . . . 1295--1303 Alain Carapelle and Jean-Marc Defise and David Strivay and Henri-Pierre Garnir Handheld modern computer brings new features to portable X-ray fluorescence coating thickness measurement device . . 1304--1306 Gergely Endr\Hodi Multidimensional spline integration of scattered data . . . . . . . . . . . . . 1307--1314 Charlotte Froese Fischer A B-spline Hartree--Fock program . . . . 1315--1326 Christian B. Mendl The FermiFab toolbox for fermionic many-particle quantum systems . . . . . 1327--1337 Henryk Czyz and Sergiy Ivashyn EKHARA: a Monte Carlo generator for $ e^+ e^- \to e^+ e^- \pi^0 $ and $ e^+ e^- \to e^+ e^- \pi^+ \pi^- $ processes 1338--1349 Preetma Soin and A. P. Horsfield and D. Nguyen-Manh Efficient self-consistency for magnetic tight binding . . . . . . . . . . . . . 1350--1360 Zhiwei Lin and Shaoen Jiang and Shunchao Wu and Longyu Kuang A local rezoning and remapping method for unstructured mesh . . . . . . . . . 1361--1376 S. Mickevicius and E. Brazauskas and D. Germanas and R. K. Kalinauskas The four-particle harmonic-oscillator brackets: Compact expressions and updated Fortran program . . . . . . . . 1377--1381 Thomas Müller GeodesicViewer --- a tool for exploring geodesics in the theory of relativity 1382--1383 Anonymous ROOT --- a C++ framework for petabyte data storage, statistical analysis and visualization . . . . . . . . . . . . . 1384--1385 Thomas Müller Motion4D-library extended . . . . . . . 1386--1388 Andrzej Daniluk Cooperative and competitive concurrency in scientific computing. A full open-source upgrade of the program for dynamical calculations of RHEED intensity oscillations . . . . . . . . . 1389--1390 Anonymous Editorial Board . . . . . . . . . . . . ??
M. Blank and A. Krassnigg Matrix algorithms for solving (in)homogeneous bound state equations 1391--1401 Raoudha Chaabane and Faouzi Askri and Sassi Ben Nasrallah Analysis of two-dimensional transient conduction-radiation problems in an anisotropically scattering participating enclosure using the lattice Boltzmann method and the control volume finite element method . . . . . . . . . . . . . 1402--1413 J. M. Alcaraz-Pelegrina and P. Rodríguez-García Simulations of pulse propagation in optical fibers using graphics processor units . . . . . . . . . . . . . . . . . 1414--1420 Stefan Maintz and Bernhard Eck and Richard Dronskowski Speeding up plane-wave electronic-structure calculations using graphics-processing units . . . . . . . 1421--1427 Barbara Kirchner and Christian Spickermann and Sebastian B. C. Lehmann and Eva Perlt and Johanna Langner and Michael von Domaros and Patricia Reuther and Frank Uhlig and Miriam Kohagen and Marc Brüssel What can clusters tell us about the bulk?: Peacemaker: Extended quantum cluster equilibrium calculations . . . . 1428--1446 Jun Li and Yi Sun and Zhiwei Cui and Fanlin Zeng Least square method for the calculation of elastic constants . . . . . . . . . . 1447--1451 Albert H. Mao and Rohit V. Pappu Exact recording of Metropolis--Hastings-class Monte Carlo simulations using one bit per sample . . 1452--1454 Apostol Gramada and Philip E. Bourne Coarse-graining the electrostatic potential via distributed multipole expansions . . . . . . . . . . . . . . . 1455--1462 V. N. Pavlov and M. V. Chukalina and A. A. Veligzhanin and Y. V. Zubavichus Optimum filtering and stochastic optimization in EXAFS data analysis . . 1463--1466 Henrik Schulz and Géza Ódor and Gergely Ódor and Máté Ferenc Nagy Simulation of $ 1 + 1 $ dimensional surface growth and lattices gases using GPUs . . . . . . . . . . . . . . . . . . 1467--1476 Tomasz Korzec and Ingmar Vierhaus and Ulli Wolff Performance of a worm algorithm in $ \phi^4 $ theory at finite quartic coupling . . . . . . . . . . . . . . . . 1477--1480 Xiong You and Yonghui Zhang and Jinxi Zhao Trigonometrically-fitted Scheifele two-step methods for perturbed oscillators . . . . . . . . . . . . . . 1481--1490 D. Emeliyanov A new algorithm for fitting tracks with energy losses due to Bremsstrahlung . . 1491--1501 Manhui Wang and Andrew J. May and Peter J. Knowles Improved version of parallel programming interface for distributed data with multiple helper servers . . . . . . . . 1502--1506 I. Shkarofsky and M. Shoucri A numerical code for the calculation of relativistic electron cyclotron damping with an arbitrary distribution function at an arbitrary harmonic . . . . . . . . 1507--1517 L. Yu. Barash and L. N. Shchur RNGSSELIB: Program library for random number generation, SSE2 realization . . 1518--1527 N. R. Badnell A Breit--Pauli distorted wave implementation for autostructure . . . . 1528--1535 B. Milenkovic and N. Stevanovic and D. Nikezic and M. Ivanovic Computer program Neutron\_CR-39 for simulation of neutrons from an Am--Be source and calculation of proton track profiles . . . . . . . . . . . . . . . . 1536--1542 Christoph Horst and Jürgen Reuter CleGo: a package for automated computation of Clebsch--Gordan coefficients in tensor product representations for Lie algebras $A$--$G$ . . . . . . . . . . . . . . . . 1543--1565 Jonathon Carter and Gudrun Heinrich SecDec: a general program for sector decomposition . . . . . . . . . . . . . 1566--1581 A. Arbey and F. Mahmoudi SuperIso Relic v3.0: a program for calculating relic density and flavour physics observables: Extension to NMSSM 1582--1583 Anonymous Editorial Board . . . . . . . . . . . . ??
Jun Liu A general method for testing validity of one-particle spectral functions . . . . 1585--1588 Gang Wang and Huiyu Zhu and Quanhua Sun and Deliang Zhang and Kaixin Liu An improved CE/SE scheme and its application to dilute gas-particle flows 1589--1601 F. L. Braga and M. S. Ribeiro Diffusion Limited Aggregation: Algorithm optimization revisited . . . . . . . . . 1602--1605 Zhen-ran Jiang and Wei-ming Yu and Ran Tao Predicting important classes of chemokine family based on kernel method 1606--1609 D. A. Baver and J. R. Myra and M. V. Umansky Linear eigenvalue code for edge plasma in full tokamak X-point geometry . . . . 1610--1620 M. Wen and A. Barnoush and K. Yokogawa Calculation of all cubic single-crystal elastic constants from single atomistic simulation: Hydrogen effect and elastic constants of nickel . . . . . . . . . . 1621--1625 G. A. Panopoulos and Z. A. Anastassi and T. E. Simos A symmetric eight-step predictor-corrector method for the numerical solution of the radial Schrödinger equation and related IVPs with oscillating solutions . . . . . . . 1626--1637 Jonathan Gross and Wolfhard Janke and Michael Bachmann Massively parallelized replica-exchange simulations of polymers on GPUs . . . . 1638--1644 Xiuling Hu and Luming Zhang A compact finite difference scheme for the fourth-order fractional diffusion-wave system . . . . . . . . . 1645--1650 Kyle A. Wendt and Joaquín E. Drut and Timo A. Lähde Toward large-scale Hybrid Monte Carlo simulations of the Hubbard model on graphics processing units . . . . . . . 1651--1656 Dmitrii Nabok and Peter Puschnig and Claudia Ambrosch-Draxl noloco: An efficient implementation of van der Waals density functionals based on a Monte--Carlo integration technique 1657--1662 Edward Farhi and Jeffrey Goldstone and David Gosset and Harvey B. Meyer A Quantum Monte Carlo method at fixed energy . . . . . . . . . . . . . . . . . 1663--1673 S. Badger and B. Biedermann and P. Uwer NGluon: a package to calculate one-loop multi-gluon amplitudes . . . . . . . . . 1674--1692 Frank Tabakin and Bruno Juliá-Díaz QCWAVE --- a Mathematica quantum computer simulation update . . . . . . . 1693--1707 A. Otero-de-la-Roza and Víctor Luaña Gibbs 2: a new version of the quasi-harmonic model code. I. Robust treatment of the static data . . . . . . 1708--1720 Lai Wang and Frank X. Lee MathQCDSR: a Mathematica package for QCD sum rules calculations . . . . . . . . . 1721--1731 Özgür Çobano\uglu and Erkcan Özcan and Saleh Sultansoy and Gökhan Ünel OPUCEM: a library with error checking mechanism for computing oblique parameters . . . . . . . . . . . . . . . 1732--1743 Osman Bari\cs Malcio\uglu and Ralph Gebauer and Dario Rocca and Stefano Baroni turboTDDFT --- a code for the simulation of molecular spectra using the Liouville--Lanczos approach to time-dependent density-functional perturbation theory . . . . . . . . . . 1744--1754 Anonymous Editorial Board . . . . . . . . . . . . ??
Alex Hansen and Asle Sudbò Preface . . . . . . . . . . . . . . . . 1755--1755 Kihyeon Cho and Junghyun Kim and Soo-hyeon Nam Collider physics based on e-Science paradigm of experiment-computing-theory 1756--1759 Volker Blobel and Claus Kleinwort and Frank Meier Fast alignment of a complex tracking detector using advanced track models . . 1760--1763 Adam Burrows and Jason Nordhaus and Ann Almgren and John Bell The potential role of spatial dimension in the neutrino-driving mechanism of core-collapse supernova explosions . . . 1764--1766 U. Shumlak and R. Lilly and N. Reddell and E. Sousa and B. Srinivasan Advanced physics calculations using a multi-fluid plasma model . . . . . . . . 1767--1770 Xijun Yu and Di Wu and Yun Xu Three dimensional discontinuous Galerkin methods for Euler equations on adaptive conforming meshes . . . . . . . . . . . 1771--1775 Jirí Jenista and Hidemasa Takana and Hideya Nishiyama and Milada Bartlová and Vladimír Aubrecht and Petr Krenek and Viktor Sember and Alan Masláni A comparative numerical study of hybrid-stabilized argon-water electric arc . . . . . . . . . . . . . . . . . . 1776--1783 Petr Jelínek and Gerhard Hensler The collisions of high-velocity clouds with the galactic halo . . . . . . . . . 1784--1789 Evgeny Z. Liverts and Nir Barnea $S$-states of helium-like ions . . . . . 1790--1795 Giovanna Zilibotti and Mauro Ferrario and Carlo Maria Bertoni and Maria Clelia Righi Ab initio calculation of adhesion and potential corrugation of diamond (001) interfaces . . . . . . . . . . . . . . . 1796--1799 Kristian Berland and Òyvind Borck and Per Hyldgaard Van der Waals density functional calculations of binding in molecular crystals . . . . . . . . . . . . . . . . 1800--1804 Elisa Londero and Elsebeth Schröder Vanadium pentoxide (V$_2$O$_5$): a van der Waals density functional study . . . 1805--1809 Asif Mushtaq and Amna Noreen and Kåre Olaussen and Ingjald Òverbò Very-high-precision solutions of a class of Schrödinger type equations . . . . . . 1810--1813 Jochen Rohrer and Per Hyldgaard Computational scheme for ab-initio predictions of chemical compositions interfaces realized by deposition growth 1814--1818 A. Yu. Menshutin and L. N. Shchur Morphological diagram of diffusion driven aggregate growth in plane: Competition of anisotropy and adhesion 1819--1823 Gabriel Villalobos and Ferenc Kun and Dorian L. Linero and José D. Muñoz Size distribution and waiting times for the avalanches of the Cell Network Model of Fracture . . . . . . . . . . . . . . 1824--1827 O. Melchert and A. K. Hartmann A dedicated algorithm for calculating ground states for the triangular random bond Ising model . . . . . . . . . . . . 1828--1832 Martin Weigel Simulating spin models on GPU . . . . . 1833--1836 A. Tröster Wilson's momentum shell renormalization group from Fourier Monte Carlo simulations . . . . . . . . . . . . . . 1837--1841 S. González and A. R. Thornton and S. Luding An event-driven algorithm for fractal cluster formation . . . . . . . . . . . 1842--1845 C. De Michele Optimizing event-driven simulations . . 1846--1850 Jahir Abbas Ahmed and S. B. Santra Rotational sandpile models: a finite size scaling study . . . . . . . . . . . 1851--1855 Heitor C. M. Fernandes and Martin Weigel Non-reversible Monte Carlo simulations of spin models . . . . . . . . . . . . . 1856--1859 W. F. Oquendo and J. D. Muñoz and A. Lizcano Influence of rotations on the critical state of soil mechanics . . . . . . . . 1860--1865 Gerardo Iñiguez and Rafael A. Barrio and János Kertész and Kimmo K. Kaski Modelling opinion formation driven communities in social networks . . . . . 1866--1869 Osamu Sano Flow-induced waterway in a heterogeneous granular material . . . . . . . . . . . 1870--1874 Leonardo Costa Ribeiro and Ricardo Machado Ruiz and Eduardo da Motta e Albuquerque and Américo T. Bernardes The diffusion of technological knowledge through interlaced networks . . . . . . 1875--1878 Jacob D. Stevenson and Martin Weigel Percolation and Schramm--Loewner evolution in the $2$D random-field Ising model . . . . . . . . . . . . . . . . . 1879--1882 Frank Beyer and Martin Weigel Spin stiffness of vector spin glasses 1883--1887 Hiromi Otsuka Phase transitions in square-lattice dimer model with anisotropic interactions . . . . . . . . . . . . . . 1888--1891 D. Wilms and A. Winkler and P. Virnau and K. Binder Monte Carlo simulations of the 2d-Ising model in the geometry of a long stripe 1892--1895 Ying Wai Li and Thomas Wüst and David P. Landau Monte Carlo simulations of the HP model (the ``Ising model'' of protein folding) 1896--1899 Pawel Sobczak and Lukasz Kucharski and Grzegorz Kamieniarz Genetic algorithm approach to calculation of geometric configurations of $2$D clusters of uniformly charged classical particles . . . . . . . . . . 1900--1903 Ingve Simonsen and Jacob B. Kryvi and Alexei A. Maradudin and Tamara A. Leskova Light scattering from anisotropic, randomly rough, perfectly conducting surfaces . . . . . . . . . . . . . . . . 1904--1908 Malihe Ghodrat and Afshin Montakhab Molecular dynamics simulation of a relativistic gas: Thermostatistical properties . . . . . . . . . . . . . . . 1909--1913 Olga Rancova and Egidijus Anisimovas and Tadas Varanavicius Numerical modeling of structural transitions in few-particle confined $2$D systems . . . . . . . . . . . . . . 1914--1918 V. Ballenegger and J. J. Cerd\`a and C. Holm Removal of spurious self-interactions in particle-mesh methods . . . . . . . . . 1919--1923 Przemyslaw Gawro\'nski and Krzysztof Kulakowski Crowd dynamics --- being stuck . . . . . 1924--1927 Thomas Vogel and Michael Bachmann Adsorption of polymers at nanowires . . 1928--1931 M. Florens and B. Sapoval and M. Filoche The optimal branching asymmetry of a bidirectional distribution tree . . . . 1932--1936 Christoph Junghans and Wolfhard Janke and Michael Bachmann Hierarchies in nucleation transitions 1937--1940 Jens Smiatek and Friederike Schmid Mesoscopic simulations of electroosmotic flow and electrophoresis in nanochannels 1941--1944 Daniel Reith and Peter Virnau Monte Carlo simulations of a single polystyrene chain in spherical confinement . . . . . . . . . . . . . . 1945--1948 H. Meyer and N. Schulmann and J. E. Zabel and J. P. Wittmer The structure factor of dense two-dimensional polymer solutions . . . 1949--1953 Jon\`as Sala and Elvira Gu\`ardia and Marco Masia Improving the force matching algorithm: Application to a simple point charge flexible model of water . . . . . . . . 1954--1957 Shigenori Matsumoto and Fumiko Takagi and Takashi Shimada and Nobuyasu Ito Molecular dynamics simulation of ribosome jam . . . . . . . . . . . . . . 1958--1960 Monika Möddel and Wolfhard Janke and Michael Bachmann Adsorption of finite polymers in different thermodynamic ensembles . . . 1961--1965 Viktoria Blavatska and Wolfhard Janke $ \Theta $-polymers in crowded media under stretching force . . . . . . . . . 1966--1969 L. Angelani and R. Di Leonardo Numerical modeling of bacteria propelled micromotors . . . . . . . . . . . . . . 1970--1973 I. V. Morozov and A. M. Kazennov and R. G. Bystryi and G. E. Norman and V. V. Pisarev and V. V. Stegailov Molecular dynamics simulations of the relaxation processes in the condensed matter on GPUs . . . . . . . . . . . . . 1974--1978 K. N. Nigussa and J. A. Stòvneng Theoretical investigation of the interaction of oxygen with pure and K-doped NiTi shape memory surface alloys 1979--1983 Srutarshi Pradhan Can we predict the failure point of a loaded composite material? . . . . . . . 1984--1988 Xizhong An and Runyu Yang and Kejun Dong and Aibing Yu DEM study of crystallization of monosized spheres under mechanical vibrations . . . . . . . . . . . . . . . 1989--1994 Matthias Degroote and Dimitri Van Neck and Carlo Barbieri Faddeev Random Phase Approximation for molecules . . . . . . . . . . . . . . . 1995--1998 M. Ögren and K. V. Kheruntsyan and J. F. Corney Stochastic simulations of fermionic dynamics with phase-space representations . . . . . . . . . . . . 1999--2003 Titus A. Beu Simulation of the flow of aqueous solutions through carbon nanotubes . . . 2004--2008 Joan Adler and Jeremie Zaffran and Amihai Silverman and Anastassia Sorkin and Or Cohen and Rafi Kalish Simulation and visualization of nanodiamond and nanographite . . . . . . 2009--2012 A. Barasi\'nski and A. Drzewi\'nski and G. Kamieniarz Quantum effects and Haldane gap in magnetic chains with alternating anisotropy axes . . . . . . . . . . . . 2013--2016 M. S. Dhaka and G. Sharma and M. C. Mishra and K. B. Joshi and R. K. Kothari and B. K. Sharma Electron momentum density distribution in Cd$_3$P$_2$ . . . . . . . . . . . . . 2017--2020 M. J. Wolak and V. G. Rousseau and G. G. Batrouni Pairing in population imbalanced fermion systems . . . . . . . . . . . . . . . . 2021--2024 Brecht Verstichel and Helen van Aggelen and Dimitri Van Neck and Paul W. Ayers and Patrick Bultinck Variational density matrix optimization using semidefinite programming . . . . . 2025--2028 H. Dixit and R. Saniz and D. Lamoen and B. Partoens Accurate pseudopotential description of the GW bandstructure of ZnO . . . . . . 2029--2031 Keiji Hayashi and Tomoki Shiraishi and Kazuho Toyoda and Fumiya Tanaka and Taiga Mori and Takumi Hata Temperature-controlled molecular dynamics study on velocity-dependent threshold behavior of dynamic nano-friction . . . . . . . . . . . . . 2032--2035 Michael Knap and Enrico Arrigoni and Wolfgang von der Linden Polaritonic properties of the Jaynes--Cummings lattice model in two dimensions . . . . . . . . . . . . . . . 2036--2040 N. Attig and P. Gibbon and Th. Lippert Trends in supercomputing: The European path to exascale . . . . . . . . . . . . 2041--2046 Xavier Sáez and Alejandro Soba and Edilberto Sánchez and Ralf Kleiber and Francisco Castejón and José M. Cela Improvements of the particle-in-cell code EUTERPE for petascaling machines 2047--2051 I. V. Morozov and I. A. Valuev Automatic distributed workflow generation with GridMD library . . . . . 2052--2058 María Eugenia Castro and Javier Díaz and Camelia Muñoz-Caro and Alfonso Niño A uniform object-oriented solution to the eigenvalue problem for real symmetric and Hermitian matrices . . . . 2059--2064 N. Chetty New modalities for scientific engagement in Africa --- the case for computational physics . . . . . . . . . . . . . . . . 2065--2070 Rubin H. Landau and Manuel J. Paez and Cristian Bordeianu and Sally Haerer Making physics education more relevant and accessible via computation and eTextBooks . . . . . . . . . . . . . . . 2071--2075 Anonymous Editorial Board . . . . . . . . . . . . ??
Alexander Pletzer and H. R. Strauss An efficient method for solving elliptic boundary element problems with application to the tokamak vacuum problem . . . . . . . . . . . . . . . . 2077--2083 Felipe A. Cruz and Simon K. Layton and L. A. Barba How to obtain efficient GPU kernels: An illustration using FMM & FGT algorithms 2084--2098 V. Roudnev and Michael Cavagnero Automatic grid construction for few-body quantum-mechanical calculations . . . . 2099--2106 Georg P. Engel and Stefan Schaefer Testing trivializing maps in the hybrid Monte Carlo algorithm . . . . . . . . . 2107--2114 Hsiao-Ping Hsu and Wolfgang Paul A fast Monte Carlo algorithm for studying bottle-brush polymers . . . . . 2115--2121 Tomás S. Grigera glsim: a general library for numerical simulation . . . . . . . . . . . . . . . 2122--2131 Hon-Cheng Wong and Un-Hong Wong and Xueshang Feng and Zesheng Tang Efficient magnetohydrodynamic simulations on graphics processing units with CUDA . . . . . . . . . . . . . . . 2132--2160 Philipp Mertmann and Denis Eremin and Thomas Mussenbrock and Ralf Peter Brinkmann and Peter Awakowicz Fine-sorting one-dimensional particle-in-cell algorithm with Monte--Carlo collisions on a graphics processing unit . . . . . . . . . . . . 2161--2167 Ralf Gamillscheg and Gundolf Haase and Wolfgang von der Linden A numerical projection technique for large-scale eigenvalue problems . . . . 2168--2173 Matthew Shelley and Nicolas Poilvert and Arash A. Mostofi and Nicola Marzari Automated quantum conductance calculations using maximally-localised Wannier functions . . . . . . . . . . . 2174--2183 Dirk Reith and Karl N. Kirschner A modern workflow for force-field development --- Bridging quantum mechanics and atomistic computational models . . . . . . . . . . . . . . . . . 2184--2191 H. S. Wiklund and S. B. Lindström and T. Uesaka Boundary condition considerations in lattice Boltzmann formulations of wetting binary fluids . . . . . . . . . 2192--2200 Ling Ti Kong Phonon dispersion measured directly from molecular dynamics simulations . . . . . 2201--2207 Kangkang Wang and Arthur R. Smith Efficient kinematical simulation of reflection high-energy electron diffraction streak patterns for crystal surfaces . . . . . . . . . . . . . . . . 2208--2212 C. González-Ballestero and L. M. Robledo and G. F. Bertsch Numeric and symbolic evaluation of the Pfaffian of general skew-symmetric matrices . . . . . . . . . . . . . . . . 2213--2218 W. Frisch and H. Eberl and H. Hluchá HFOLD --- a program package for calculating two-body MSSM Higgs decays at full one-loop level . . . . . . . . . 2219--2226 Daniel J. Sindhikara Modular reweighting software for statistical mechanical analysis of biased equilibrium data . . . . . . . . 2227--2231 A. Otero-de-la-Roza and David Abbasi-Pérez and Víctor Luaña Gibbs 2: a new version of the quasiharmonic model code. II. Models for solid-state thermodynamics, features and implementation . . . . . . . . . . . . . 2232--2248 P. M. Dupuy and P. Austin and G. W. Delaney and M. P. Schwarz Pore scale definition and computation from tomography data . . . . . . . . . . 2249--2258 Rok Zitko SNEG --- Mathematica package for symbolic calculations with second-quantization-operator expressions 2259--2264 Reuben D. Budiardja and Christian Y. Cardall Parallel FFT-based Poisson solver for isolated three-dimensional systems . . . 2265--2275 G. Cullen and J.-Ph. Guillet and G. Heinrich and T. Kleinschmidt and E. Pilon and T. Reiter and M. Rodgers Golem95C: a library for one-loop integrals with complex masses . . . . . 2276--2284 T. Loke and J. B. Wang An efficient quantum circuit analyser on qubits and qudits . . . . . . . . . . . 2285--2294 Scott D. Berry and Paul Bourke and Jingbo B. Wang qwViz: Visualisation of quantum walks on graphs . . . . . . . . . . . . . . . . . 2295--2302 A. V. Nesterenko and C. Simolo QCDMAPT\_F: Fortran version of QCDMAPT package . . . . . . . . . . . . . . . . 2303--2304 David C. Lonie and Eva Zurek XtalOpt version r7: An open-source evolutionary algorithm for crystal structure prediction . . . . . . . . . . 2305--2306 Anonymous Editorial Board . . . . . . . . . . . . ??
Trung Dac Nguyen and Carolyn L. Phillips and Joshua A. Anderson and Sharon C. Glotzer Rigid body constraints realized in massively-parallel molecular dynamics on graphics processing units . . . . . . . 2307--2313 F. Alhama and F. Marín and J. A. Moreno An efficient and reliable model to simulate microscopic mechanical friction in the Frenkel--Kontorova-Tomlinson model . . . . . . . . . . . . . . . . . 2314--2325 Hui-Chin Tang and Hwapeng Chang An exhaustive search for good 64-bit linear congruential random number generators with restricted multiplier 2326--2330 Yuchuan Chu and Yong Cao and Xiaoming He and Min Luo Asymptotic boundary conditions with immersed finite elements for interface magnetostatic/electrostatic field problems with open boundary . . . . . . 2331--2338 Robert J. Hinde QSATS: MPI-driven quantum simulations of atomic solids at zero temperature . . . 2339--2349 Stephan Deublein and Bernhard Eckl and Jürgen Stoll and Sergey V. Lishchuk and Gabriela Guevara-Carrion and Colin W. Glass and Thorsten Merker and Martin Bernreuther and Hans Hasse and Jadran Vrabec ms 2: a molecular simulation tool for thermodynamic properties . . . . . . . . 2350--2367 G. Cullen and M. Koch-Janusz and T. Reiter spinney: a Form library for helicity spinors . . . . . . . . . . . . . . . . 2368--2387 Ryan Gavin and Ye Li and Frank Petriello and Seth Quackenbush FEWZ 2.0: a code for hadronic $Z$ production at next-to-next-to-leading order . . . . . . . . . . . . . . . . . 2388--2403 Claude Duhr and Benjamin Fuks A superspace module for the FeynRules package . . . . . . . . . . . . . . . . 2404--2426 A. van Hameren OneLOop: For the evaluation of one-loop scalar functions . . . . . . . . . . . . 2427--2438 Sam J. Cipolla ISICS2011, an updated version of ISICS: a program for calculation K-, L-, and M-shell cross sections from PWBA and ECPSSR theories using a personal computer . . . . . . . . . . . . . . . . 2439--2440 J. M. Badia and J. L. Movilla and J. I. Climente and M. Castillo and M. Marqués and R. Mayo and E. S. Quintana-Ortí and J. Planelles A parallel solver for huge dense linear systems . . . . . . . . . . . . . . . . 2441--2442 Jon\`as Sala and Elvira Gu\`ardia and Marco Masia Erratum to ``Improving the force matching algorithm: Application to a simple point charge flexible model of water'' [Comput. Phys. Comm. \bf 182 (9) (2011) 1954--1957] . . . . . . . . . . . 2443--2443 Anonymous Editorial Board . . . . . . . . . . . . ??
A. Frezzotti and G. P. Ghiroldi and L. Gibelli Solving the Boltzmann equation on GPUs 2445--2453 Heiko Bauke and Christoph H. Keitel Accelerating the Fourier split operator method via graphics processing units . . 2454--2463 Akbar Mohebbi and Zohreh Asgari Efficient numerical algorithms for the solution of ``good'' Boussinesq equation in water wave propagation . . . . . . . 2464--2470 J. E. Macías-Díaz Sufficient conditions for the preservation of the boundedness in a numerical method for a physical model with transport memory and nonlinear damping . . . . . . . . . . . . . . . . 2471--2478 Adrian Alexandrescu and José R. Salgueiro Efficient numerical method for linear stability analysis of solitary waves . . 2479--2485 Jiyong Li and Bin Wang and Xiong You and Xinyuan Wu Two-step extended RKN methods for oscillatory systems . . . . . . . . . . 2486--2507 I. Silin and R. Sydora Hybrid Fourier--Vlasov simulation in non-inertial reference frames . . . . . 2508--2518 Mehdi Dehghan and Ameneh Taleei A Chebyshev pseudospectral multidomain method for the soliton solution of coupled nonlinear Schrödinger equations 2519--2529 Jürgen Rubow and Ulli Wolff A factorization algorithm to compute Pfaffians . . . . . . . . . . . . . . . 2530--2532 A. Odrzywolek Gaussian integration with rescaling of abscissas and weights . . . . . . . . . 2533--2539 Mehdi Dehghan and Rezvan Salehi The solitary wave solution of the two-dimensional regularized long-wave equation in fluids and plasmas . . . . . 2540--2549 Andreas Kleefeld and Tzu-Chu Lin The nonlinear Landweber method applied to an inverse scattering problem for sound-soft obstacles in $3$D . . . . . . 2550--2560 Michal Meres and Ivan Melo and Boris Tomásik and Vladimír Balek and Vladimír Cerný Generating heavy particles with energy and momentum conservation . . . . . . . 2561--2566 Didier Sébilleau and Calogero Natoli and George M. Gavaza and Haifeng Zhao and Fabiana Da Pieve and Keisuke Hatada MsSpec-1.0: a multiple scattering package for electron spectroscopies in material science . . . . . . . . . . . . 2567--2579 David D. Jenkins and Gregory D. Peterson AESS: Accelerated Exact Stochastic Simulation . . . . . . . . . . . . . . . 2580--2586 G. J. Ackland and K. D'Mellow and S. L. Daraszewicz and D. J. Hepburn and M. Uhrin and K. Stratford The MOLDY short-range molecular dynamics package . . . . . . . . . . . . . . . . 2587--2604 P. Bechtle and O. Brein and S. Heinemeyer and G. Weiglein and K. E. Williams HiggsBounds 2.0.0: Confronting neutral and charged Higgs sector predictions with exclusion bounds from LEP and the Tevatron . . . . . . . . . . . . . . . . 2605--2631 Zi Li and Xu Zhang and Gang Lu A Fortran program for calculating electron or hole mobility in disordered semiconductors from first-principles . . 2632--2637 Ozlem Ozgun and Gökhan Apaydin and Mustafa Kuzuoglu and Levent Sevgi PETOOL: Matlab-based one-way and two-way split-step parabolic equation tool for radiowave propagation over variable terrain . . . . . . . . . . . . . . . . 2638--2654 Jiahang Zhong and Run-Sheng Huang and Shih-Chang Lee A program for the Bayesian Neural Network in the ROOT framework . . . . . 2655--2660 Eduardo X. Miqueles and Alvaro R. De Pierro C-library raft: Reconstruction algorithms for tomography. Applications to X-ray fluorescence tomography . . . . 2661--2673 Anonymous Editorial Board . . . . . . . . . . . . ??
Matthew G. Reuter and Judith C. Hill and Robert J. Harrison Solving PDEs in irregular geometries with multiresolution methods I: Embedded Dirichlet boundary conditions . . . . . 1--7 Nobuya Maeshima and Ken-ichi Hino Parallelization of the R-matrix propagation method for the study of intense-laser-driven semiconductor superlattices . . . . . . . . . . . . . 8--14 Zhijie Xu and Hai Huang and Xiaoyi Li and Paul Meakin Phase field and level set methods for modeling solute precipitation and/or dissolution . . . . . . . . . . . . . . 15--19 S. Kaprzyk An algebraic formulation of the simplex linear method for multiple integrals over the $d$-dimensional domain . . . . 20--25 Filip A. Sala Mobile phone as a platform for numerical simulation . . . . . . . . . . . . . . . 26--29 Chuan-Hui Zhang and Qiong Ran and Jiang Shen Structural stability of silicene-like nanotubes . . . . . . . . . . . . . . . 30--33 Y. Nakamura and K.-I. Ishikawa and Y. Kuramashi and T. Sakurai and H. Tadano Modified block BiCGSTAB for lattice QCD 34--37 Nicolas Bigaouette and Edward Ackad and Lora Ramunno Nonlinear grid mapping applied to an FDTD-based, multi-center $3$D Schrödinger equation solver . . . . . . . . . . . . 38--45 Jiantong Weng and Tomoyoshi Shimobaba and Minoru Oikawa and Nobuyuki Masuda and Tomoyoshi Ito Fast recurrence relation for computer-generated-hologram . . . . . . 46--49 Tao Jiang and Jie Ouyang and Jin-Lian Ren and Bin-Xin Yang and Xiao-Yang Xu A mixed corrected symmetric SPH (MC--SSPH) method for computational dynamic problems . . . . . . . . . . . . 50--62 L. Gr. Ixaru Runge--Kutta method with equation dependent coefficients . . . . . . . . . 63--69 J. Waltz and T. A. Gianakon A comparison of mix models for the Rayleigh--Taylor instability . . . . . . 70--79 Roberto Barrio and Marcos Rodríguez and Fernando Blesa Computer-assisted proof of skeletons of periodic orbits . . . . . . . . . . . . 80--85 Zhaoxia Chen and Xiong You and Wei Shi and Zhongli Liu Symmetric and symplectic ERKN methods for oscillatory Hamiltonian systems . . 86--98 M. S. Reis Models for one-dimensional molecular magnets . . . . . . . . . . . . . . . . 99--105 Yezhi Lin and Yinping Liu and Zhibin Li Symbolic computation of analytic approximate solutions for nonlinear differential equations with initial conditions . . . . . . . . . . . . . . . 106--117 Jaros\law Adam Miszczak Generating and using truly random quantum states in Mathematica . . . . . 118--124 Valerio Novaresio and María García-Camprubí and Salvador Izquierdo and Pietro Asinari and Norberto Fueyo An open-source library for the numerical modeling of mass-transfer in solid oxide fuel cells . . . . . . . . . . . . . . . 125--146 Guillem Carles and Carme Ferran and Artur Carnicer and Salvador Bosch Design and implementation of a scene-dependent dynamically selfadaptable wavefront coding imaging system . . . . . . . . . . . . . . . . . 147--154 Beat Röthlisberger and Jörg Lehmann and Daniel Loss libCreme: An optimization library for evaluating convex-roof entanglement measures . . . . . . . . . . . . . . . . 155--165 N. Schunck and J. Dobaczewski and J. McDonnell and W. Satula and J. A. Sheikh and A. Staszczak and M. Stoitsov and P. Toivanen Solution of the Skyrme--Hartree--Fock--Bogolyubov equations in the Cartesian deformed harmonic-oscillator basis.: (VII) \tt hfodd (v2.49t): a new version of the program . . . . . . . . . . . . . . . . 166--192 N. D. Gagunashvili CHICOM: a code of tests for comparing unweighted and weighted histograms and two weighted histograms . . . . . . . . 193--196 A. E. Botha General $R$-matrix approach for integrating the multiband $ k \cdot p $ equation in layered semiconductor structures . . . . . . . . . . . . . . . 197--202 Xevi Biarnés and Fabio Pietrucci and Fabrizio Marinelli and Alessandro Laio METAGUI. A VMD interface for analyzing metadynamics and molecular dynamics simulations . . . . . . . . . . . . . . 203--211 Anonymous Computer Physics Communications --- List of Editors . . . . . . . . . . . . . . . iv--vi Anonymous Editorial Board . . . . . . . . . . . . ??
Andrzej Daniluk Visual modeling for scientific software architecture design. A practical approach . . . . . . . . . . . . . . . . 213--230 Carlos A. Jara and Francisco Esquembre and Wolfgang Christian and Francisco A. Candelas and Fernando Torres and Sebastián Dormido A new $3$D visualization Java framework based on physics principles . . . . . . 231--244 Luciano M. de Andrade Filho and José Manoel de Seixas and Roberto Agostino Vitillo and Brian Thomas Martin Three-dimensional event visualization for the ATLAS calorimeter . . . . . . . 245--250 K. Roeller and S. Herminghaus and A. Hager-Fingerle Sinusoidal shaking in event-driven simulations . . . . . . . . . . . . . . 251--260 Yubao Zhen and Chengbiao Chu A deformation-fluctuation hybrid method for fast evaluation of elastic constants with many-body potentials . . . . . . . 261--265 S. A. Galindo-Torres and D. M. Pedroso and D. J. Williams and L. Li Breaking processes in three-dimensional bonded granular materials with general shapes . . . . . . . . . . . . . . . . . 266--277 Yong Gan and J. K. Chen A hybrid method for integrated atomistic-continuum simulation of ultrashort-pulsed laser interaction with semiconductors . . . . . . . . . . . . . 278--284 F. Mahmoudi and S. Heinemeyer and A. Arbey and A. Bharucha and T. Goto and T. Hahn and U. Haisch and S. Kraml and M. Muhlleitner and J. Reuter and P. Skands and P. Slavich Flavour Les Houches Accord: Interfacing flavour related codes . . . . . . . . . 285--298 Georg Bergner and Ja\"\ir Wuilloud Acceleration of the Arnoldi method and real eigenvalues of the non-Hermitian Wilson--Dirac operator . . . . . . . . . 299--304 R. Kleiber and R. Hatzky A partly matrix-free solver for the gyrokinetic field equation in three-dimensional geometry . . . . . . . 305--308 Xuesong Li and Lin Ma Minimizing binary functions with simulated annealing algorithm with applications to binary tomography . . . 309--315 Mingzhe Liu and Xianguo Tuo and Zhe Li and Jianbo Yang and Yang Gao Asymmetric exclusion process for modeling of information flow . . . . . . 316--319 Aleksander Stanislavsky and Karina Weron Numerical scheme for calculating of the fractional two-power relaxation laws in time-domain of measurements . . . . . . 320--323 P. M. C. Rourke and S. R. Julian Numerical extraction of de Haas--van Alphen frequencies from calculated band energies . . . . . . . . . . . . . . . . 324--332 Ben-Hao Sa and Dai-Mei Zhou and Yu-Liang Yan and Xiao-Mei Li and Sheng-Qin Feng and Bao-Guo Dong and Xu Cai PACIAE 2.0: An updated parton and hadron cascade model (program) for the relativistic nuclear collisions . . . . 333--346 S. Kaprzyk An algebraic formulation and implementation of the tetrahedron linear method for the Brillouin zone integration of spectral functions . . . 347--362 T. Hynninen and C. L. Dias and A. Mkrtchyan and V. Heinonen and M. Karttunen and A. S. Foster and T. Ala-Nissila A molecular dynamics implementation of the $3$D Mercedes--Benz water model . . 363--369 Ulrich Hohenester and Andreas Trügler MNPBEM --- a Matlab toolbox for the simulation of plasmonic nanoparticles 370--381 Joseph E. Curtis and Sindhu Raghunandan and Hirsh Nanda and Susan Krueger SASSIE: a program to study intrinsically disordered biological molecules and macromolecular ensembles using experimental scattering restraints . . . 382--389 Dennis M. Elking and Lalith Perera and Lee G. Pedersen HPAM: Hirshfeld partitioned atomic multipoles . . . . . . . . . . . . . . . 390--397 Matej Batic and Maria Grazia Pia and Sam J. Cipolla ISICSoo: a class for the calculation of ionization cross sections from ECPSSR and PWBA theory . . . . . . . . . . . . 398--404 Christian Clason and Gregory von Winckel A general spectral method for the numerical simulation of one-dimensional interacting fermions . . . . . . . . . . 405--417 N. D. Gagunashvili CHIWEI: a code of goodness of fit tests for weighted and unweighted histograms 418--421 Dominik Stöckinger and Philipp Varso FeynArts model file for MSSM transition counterterms from DREG to DRED . . . . . 422--430 Sami Heinäsmäki IONIS: Approximate atomic photoionization intensities . . . . . . 431--437 Paolo Barletta COOL: a code for Dynamic Monte Carlo Simulation of molecular dynamics . . . . 438--439 Kwang Jin Oh and Ji Hoon Kang and Hun Joo Myung mm\_par2.0: An object-oriented molecular dynamics simulation program parallelized using a hierarchical scheme with MPI and OPENMP . . . . . . . . . . . . . . . . . 440--441 Xian-You Wang and Xing-Gang Wu A trick to improve the efficiency of generating unweighted $ B c $ events from BCVEGPY . . . . . . . . . . . . . . 442--445 Min Hyung Cho and Wei Cai Revision of wFMM --- a Wideband Fast Multipole Method for the two-dimensional complex Helmholtz equation . . . . . . . 446--447 Anonymous Editorial Board . . . . . . . . . . . . ??
W. Michael Brown and Axel Kohlmeyer and Steven J. Plimpton and Arnold N. Tharrington Implementing molecular dynamics on hybrid high performance computers --- Particle--particle particle--mesh . . . 449--459 T. Hahn The high-energy physicist's guide to MathLink . . . . . . . . . . . . . . . . 460--469 A. A. Kosti and Z. A. Anastassi and T. E. Simos An optimized explicit Runge--Kutta--Nyström method for the numerical solution of orbital and related periodical initial value problems . . . . . . . . . . . . . . . . 470--479 C. Espejo and T. Rangel and Y. Pouillon and A. H. Romero and X. Gonze Wannier functions approach to van der Waals interactions in ABINIT . . . . . . 480--485 Manamohan Prusty and Jia Ning Leaw and Shan Shang Chong and Siew Ann Cheong Stochastic boundary conditions for grand-canonical-like molecular dynamics simulations of open systems . . . . . . 486--496 Grady Schofield and James R. Chelikowsky and Yousef Saad A spectrum slicing method for the Kohn--Sham problem . . . . . . . . . . . 497--505 U. D. Jentschura and E. Lötstedt Numerical calculation of Bessel, Hankel and Airy functions . . . . . . . . . . . 506--519 A. Gray and I. Bethune and R. Kenway and L. Smith and M. Guest and C. Kitchen and P. Calleja and A. Korzynski and S. Rankin and M. Ashworth and A. Porter and I. Todorov and M. Plummer and E. Jones and L. Steenman-Clark and B. Ralston and C. Laughton Mapping application performance to HPC architecture . . . . . . . . . . . . . . 520--529 A. Kopp and I. Büsching and R. D. Strauss and M. S. Potgieter A stochastic differential equation code for multidimensional Fokker--Planck type problems . . . . . . . . . . . . . . . . 530--542 S. Ihnatsenka Computation of electron quantum transport in graphene nanoribbons using GPU . . . . . . . . . . . . . . . . . . 543--546 Qiao-Hong Sui and Zhong-Jun Ding and Rui Jiang and Wei Huang and Duo Sun and Bing-Hong Wang Slow-to-start effect in two-dimensional traffic flow . . . . . . . . . . . . . . 547--551 Shu-Sen Xie and Su-Cheol Yi and Tae In Kwon Fourth-order compact difference and alternating direction implicit schemes for telegraph equations . . . . . . . . 552--569 Andrei Bourchtein and Ludmila Bourchtein A semi-implicit time-splitting scheme for a regional nonhydrostatic atmospheric model . . . . . . . . . . . 570--587 Chunye Gong and Jie Liu and Haowei Huang and Zhenghu Gong Particle transport with unstructured grid on GPU . . . . . . . . . . . . . . 588--593 B. Roostaei and W. C. Ermler Electric dipole transition moments and permanent dipole moments for spin-orbit configuration interaction wave functions 594--599 Ram Jiwari and Sapna Pandit and R. C. Mittal Numerical simulation of two-dimensional sine--Gordon solitons by differential quadrature method . . . . . . . . . . . 600--616 Jan L. Cie\'sli\'nski and Boguslaw Ratkiewicz Discrete gradient algorithms of high order for one-dimensional systems . . . 617--627 Lorenzo Pardini and Valerio Bellini and Franca Manghi and Claudia Ambrosch-Draxl First-principles calculation of X-ray dichroic spectra within the full-potential linearized augmented planewave method: An implementation into the Wien2k code . . . . . . . . . . . . 628--636 R. Ramis and K. Eidmann and J. Meyer-ter-Vehn and S. Hüller MULTI-fs --- a computer code for laser-plasma interaction in the femtosecond regime . . . . . . . . . . . 637--655 Aldée Charbonnier and Céline Combet and David Maurin clumpy: a code for $ \gamma $-ray signals from dark matter structures . . 656--668 I. O. Bespamyatnov and W. L. Rowan and K. T. Liao ALCBEAM --- Neutral beam formation and propagation code for beam-based plasma diagnostics . . . . . . . . . . . . . . 669--676 Gundra Kondayya and Alok Shukla A Fortran 90 Hartree--Fock program for one-dimensional periodic $ \pi $-conjugated systems using Pariser--Parr--Pople model . . . . . . . 677--689 David C. Lonie and Eva Zurek Identifying duplicate crystal structures: XtalComp, an open-source solution . . . . . . . . . . . . . . . . 690--697 T. C. Petersen and S. P. Ringer Local electron tomography using angular variations of surface tangents: Stomo version 2 . . . . . . . . . . . . . . . 698--704 A. Babaev and Yu. L. Pivovarov Resonant coherent excitation of hydrogen-like ions planar channeled in a crystal: Transition into the first excited state . . . . . . . . . . . . . 705--710 Dean Lambert and Alasdair C. Hamilton and George Constable and Harsh Snehanshu and Sharvil Talati and Johannes Courtial TIM, a ray-tracing program for METATOY research and its dissemination . . . . . 711--732 A. V. Nikitin An efficient code for calculation of the 6$C$, 9$C$ and 12$C$ symbols for $ C_{3v} $, $ T_d $, and $ O_h $ point groups . . . . . . . . . . . . . . . . . 733--736 Bruno Juliá-Díaz and Tobias Graß Strongdeco: Expansion of analytical, strongly correlated quantum states into a many-body basis . . . . . . . . . . . 737--745 Mikolaj Chojnacki and Adam Kisiel and Wojciech Florkowski and Wojciech Broniowski THERMINATOR 2: THERMal heavy I o N gener ATOR 2 . . . . . . . . . . . . . . . . . 746--773 Debottam Das and Ulrich Ellwanger and Ana M. Teixeira NMSDECAY: a Fortran code for supersymmetric particle decays in the Next-to-Minimal Supersymmetric Standard Model . . . . . . . . . . . . . . . . . 774--779 Thomas Fischbacher Numerical tools to validate stationary points of $ {\rm SO}(8) $-gauged $ N = 8 $, $ D = 4 $ supergravity . . . . . . . 780--784 B. C. Allanach and C. H. Kom and M. Hanussek Computation of neutrino masses in $R$-parity violating supersymmetry: SOFTSUSY3.2 . . . . . . . . . . . . . . 785--793 Amparo Gil and Javier Segura and Nico M. Temme An improved algorithm and a Fortran 90 module for computing the conical function $ p^m_{1 / 2 + i \tau }(x) $ 794--799 Tomasz Dziubak and Jacek Matulewski An object-oriented implementation of a solver of the time-dependent Schrödinger equation using the CUDA technology . . . 800--812 Stefan Weinzierl The SISCone jet algorithm optimised for low particle multiplicities . . . . . . 813--820 N. Davidson and G. Nanava and T. Przedzi\'nski and E. Richter-W\kas and Z. W\kas Universal interface of TAUOLA: Technical and physics documentation . . . . . . . 821--843 Evgeny Z. Liverts and Nir Barnea $S$-states of helium-like ions . . . . . 844--845 Daniel Ma\^\itre Extension of HPL to complex arguments 846--846 Anonymous Editorial Board . . . . . . . . . . . . ??
Juraci P. Reis and Artur F. Menezes and Edmilson M. Souza and Alessandro Facure and Jose A. C. C. Medeiros and Ademir X. Silva Dose optimization in $^{125I}$ permanent prostate seed implants using the Monte Carlo method . . . . . . . . . . . . . . 847--852 C. Bonati and G. Cossu and M. D'Elia and P. Incardona QCD simulations with staggered fermions on GPUs . . . . . . . . . . . . . . . . 853--863 Francisco de la Hoz and Fernando Vadillo Numerical simulation of the $N$-dimensional sine--Gordon equation via operational matrices . . . . . . . . 864--879 Mathias Winkel and Robert Speck and Helge Hübner and Lukas Arnold and Rolf Krause and Paul Gibbon A massively parallel, multi-disciplinary Barnes--Hut tree code for extreme-scale $N$-body simulations . . . . . . . . . . 880--889 Nathan Schmid and Clara D. Christ and Markus Christen and Andreas P. Eichenberger and Wilfred F. van Gunsteren Architecture, implementation and parallelisation of the GROMOS software for biomolecular simulation . . . . . . 890--903 Cristóbal Bertoglio and Boris N. Khoromskij Low-rank quadrature-based tensor approximation of the Galerkin projected Newton/Yukawa kernels . . . . . . . . . 904--912 Feng-Gong Lang and Xiao-Ping Xu Quintic B-spline collocation method for second order mixed boundary value problem . . . . . . . . . . . . . . . . 913--921 F. Merz and C. Kowitz and E. Romero and J. E. Roman and F. Jenko Multi-dimensional gyrokinetic parameter studies based on eigenvalue computations 922--930 V. Ogarko and S. Luding A fast multilevel algorithm for contact detection of arbitrarily polydisperse objects . . . . . . . . . . . . . . . . 931--936 S. Kucherenko and S. Tarantola and P. Annoni Estimation of global sensitivity indices for models with dependent variables . . 937--946 J. Seebacher and A. Kendl Towards a unified linear kinetic transport model with the trace ion module for EIRENE . . . . . . . . . . . 947--959 A. Buckley and A. Shilton and M. J. White Fast supersymmetry phenomenology at the Large Hadron Collider using machine learning techniques . . . . . . . . . . 960--970 M. Fitzgerald and J. Khachan A $2$-D PIC/MC/Vlasov method for electrostatic fusion discharges . . . . 971--979 Eiji Tsuchida and Yoong-Kee Choe Iterative diagonalization of symmetric matrices in mixed precision and its application to electronic structure calculations . . . . . . . . . . . . . . 980--985 Christian Ringl and Herbert M. Urbassek A LAMMPS implementation of granular mechanics: Inclusion of adhesive and microscopic friction forces . . . . . . 986--992 C. A. Duarte Compact expressions for the magnetoresistance and the electron/hole density of states under the application of magnetic fields . . . . . . . . . . . 993--997 Yueh-Cheng Kuo and Shih-Feng Shieh and Weichung Wang Rotational quotient procedure: a tracking control continuation method for PDEs on radially symmetric domains . . . 998--1001 M. Hirai and S. Kumano Numerical solution of $ Q^2 $ evolution equations for fragmentation functions 1002--1013 Shigeru Odaka and Yoshimasa Kurihara GR@PPA 2.8: Initial-state jet matching for weak-boson production processes at hadron collisions . . . . . . . . . . . 1014--1028 R. J. Casperson IBAR: Interacting boson model calculations for large system sizes . . 1029--1035 M. Kachelrieß and S. Ostapchenko and R. Tom\`as ELMAG: a Monte Carlo simulation of electromagnetic cascades on the extragalactic background light and in magnetic fields . . . . . . . . . . . . 1036--1043 K. T. Vu and G. F. Jefferson and J. Carminati Finding higher symmetries of differential equations using the Maple package DESOLVII . . . . . . . . . . . . 1044--1054 I. V. Grossu and C. Besliu and Al. Jipa and E. Stan and T. Esanu and D. Felea and C. C. Bordeianu Code C# for chaos analysis of relativistic many-body systems with reactions . . . . . . . . . . . . . . . 1055--1059 Tobias Huber and Daniel Ma\^\itre HypExp 2, expanding hypergeometric functions about half-integer parameters 1060--1060 Anonymous Editorial Board . . . . . . . . . . . . ??
Stefano Tarantola and William Becker and Dirk Zeitz A comparison of two sampling methods for global sensitivity analysis . . . . . . 1061--1072 Omar Awile and Ferit Büyükkeçeci and Sylvain Reboux and Ivo F. Sbalzarini Fast neighbor lists for adaptive-resolution particle simulations 1073--1081 Yiqiang Xu and Luming Zhang Alternating direction implicit method for solving two-dimensional cubic nonlinear Schrödinger equation . . . . . 1082--1093 Takayuki Umeda and Yasuhiro Nariyuki and Daichi Kariya A non-oscillatory and conservative semi-Lagrangian scheme with fourth-degree polynomial interpolation for solving the Vlasov equation . . . . 1094--1100 Omar Ramadan Unified matrix-exponential FDTD formulations for modeling electrically and magnetically dispersive materials 1101--1106 A. Bierwage and C. Di Troia and S. Briguglio and G. Vlad Orbit-based representation of equilibrium distribution functions for low-noise initialization of kinetic simulations of toroidal plasmas . . . . 1107--1123 Tomoyoshi Shimobaba and Jiantong Weng and Takahiro Sakurai and Naohisa Okada and Takashi Nishitsuji and Naoki Takada and Atsushi Shiraki and Nobuyuki Masuda and Tomoyoshi Ito Computational wave optics library for C++: CWO++ library . . . . . . . . . . . 1124--1138 C. Voglis and K. E. Parsopoulos and D. G. Papageorgiou and I. E. Lagaris and M. N. Vrahatis MEMPSODE: a global optimization software based on hybridization of population-based algorithms and local searches . . . . . . . . . . . . . . . . 1139--1154 Anonymous Editorial Board . . . . . . . . . . . . ??
Anonymous Editorial Board . . . . . . . . . . . . ?? Yukihiro Komura and Yutaka Okabe GPU-based Swendsen--Wang multi-cluster algorithm for the simulation of two-dimensional classical spin systems 1155--1161 Wanjie Xiong and Fan Zhong and Shuangli Fan Positive specific-heat critical exponent of a three-dimensional three-state random-bond Potts model . . . . . . . . 1162--1171 Fengshun Lu and Junqiang Song and Fukang Yin and Xiaoqian Zhu Performance evaluation of hybrid programming patterns for large CPU/GPU heterogeneous clusters . . . . . . . . . 1172--1181 D. Melazzi and D. Curreli and M. Manente and J. Carlsson and D. Pavarin SPIREs: a Finite-Difference Frequency-Domain electromagnetic solver for inhomogeneous magnetized plasma cylinders . . . . . . . . . . . . . . . 1182--1191 Xingang Ren and Zhixiang Huang and Xianliang Wu and Silong Lu and Hui Wang and Lei Wu and Shen Li High-order unified symplectic FDTD scheme for the metamaterials . . . . . . 1192--1200 Céline Degrande and Claude Duhr and Benjamin Fuks and David Grellscheid and Olivier Mattelaer and Thomas Reiter UFO --- the Universal FeynRules Output 1201--1214 C. Alexandrou and K. Hadjiyiannakou and G. Koutsou and A. O'Cais and A. Strelchenko Evaluation of fermion loops applied to the calculation of the $ \eta ' $ mass and the nucleon scalar and electromagnetic form factors . . . . . . 1215--1224 K.-M. Lin and C.-T. Hung and F.-N. Hwang and M. R. Smith and Y.-W. Yang and J.-S. Wu Development of a parallel semi-implicit two-dimensional plasma fluid modeling code using finite-volume method . . . . 1225--1236 Janis Timoshenko and Alexei Kuzmin and Juris Purans Reverse Monte Carlo modeling of thermal disorder in crystalline materials from EXAFS spectra . . . . . . . . . . . . . 1237--1245 Michaël Magoga and Fabien Archambault and Jorge I. Cerdá Nt\_STM: a step forward in Scanning Tunneling Microscopy (STM) simulations 1246--1249 Wei Shi and Xinyuan Wu On symplectic and symmetric ARKN methods 1250--1258 Reza Mokhtari and Majid Mohseni A meshless method for solving mKdV equation . . . . . . . . . . . . . . . . 1259--1268 Jack Deslippe and Georgy Samsonidze and David A. Strubbe and Manish Jain and Marvin L. Cohen and Steven G. Louie BerkeleyGW: a massively parallel computer package for the calculation of the quasiparticle and optical properties of materials and nanostructures . . . . 1269--1289 Markus Q. Huber and Jens Braun Algorithmic derivation of functional renormalization group equations and Dyson--Schwinger equations . . . . . . . 1290--1320 Albert Deuzeman and Siebren Reker and Carsten Urbach and ETM Collaboration Lemon: An MPI parallel I/O library for data encapsulation using LIME . . . . . 1321--1335 Simon Catterall and Anosh Joseph An object oriented code for simulating supersymmetric Yang--Mills theories . . 1336--1353 P. Jakubczyk and A. Wal and D. Jakubczyk and T. Lulek Computer implementation of the Kerov--Kirillov--Reshetikhin algorithm 1354--1362 H. P. Nilles and S. Ramos-Sánchez and P. K. S. Vaudrevange and A. Wingerter The orbifolder: a tool to study the low-energy effective theory of heterotic orbifolds . . . . . . . . . . . . . . . 1363--1380 András Vukics C++QEDv2: The multi-array concept and compile-time algorithms in the definition of composite quantum systems 1381--1396 A. Deveikis A computer program for two-particle intrinsic coefficients of fractional parentage . . . . . . . . . . . . . . . 1397--1401
Anonymous Editorial Board . . . . . . . . . . . . ?? François Fillion-Gourdeau and Emmanuel Lorin and André D. Bandrauk Numerical solution of the time-dependent Dirac equation in coordinate space without fermion-doubling . . . . . . . . 1403--1415 M. Bernaschi and M. Fatica and G. Parisi and L. Parisi Multi-GPU codes for spin systems simulations . . . . . . . . . . . . . . 1416--1421 M. Hutchinson and M. Widom VASP on a GPU: Application to exact-exchange calculations of the stability of elemental boron . . . . . . 1422--1426 Haokai Lu and Peng Li Stochastic projective methods for simulating stiff chemical reacting systems . . . . . . . . . . . . . . . . 1427--1442 Andreas Mayer and Hanna Salopaasi and Katariina Pussi and Renee D. Diehl A novel method for the extraction of intensity-energy spectra from low-energy electron diffraction patterns . . . . . 1443--1447 I. Akushevich and O. F. Filoti and A. Ilyichev and N. Shumeiko Monte Carlo generator ELRADGEN 2.0 for simulation of radiative events in elastic $ e p $-scattering of polarized particles . . . . . . . . . . . . . . . 1448--1467 J. M. Cherfils and G. Pinon and E. Rivoalen JOSEPHINE: a parallel SPH code for free-surface flows . . . . . . . . . . . 1468--1480 B. Hischenhuber and F. Frommlet and W. Schreiner and B. Knapp MH$^2$ c: Characterization of major histocompatibility $ \alpha $-helices --- an information criterion approach 1481--1490 Benjamin Lindner and Jeremy C. Smith Sassena --- X-ray and neutron scattering calculated from molecular dynamics trajectories using massively parallel computers . . . . . . . . . . . . . . . 1491--1501 C. Schimeczek and D. Engel and G. Wunner A highly optimized code for calculating atomic data at neutron star magnetic field strengths using a doubly self-consistent Hartree--Fock--Roothaan method . . . . . . . . . . . . . . . . . 1502--1510 Luiz C. Mostaço-Guidolin and Rafael B. Frigori and Leonid Ruchko and Ricardo M. O. Galvão SCTE: an open-source Perl framework for testing equipment control and data acquisition . . . . . . . . . . . . . . 1511--1518 Feng Feng A recursive method to calculate UV-divergent parts at one-loop level in dimensional regularization . . . . . . . 1519--1524 S. Fritzsche The Ratip program for relativistic calculations of atomic transition, ionization and recombination properties 1525--1559 Daniel J. Sindhikara Modular reweighting software for statistical mechanical analysis of biased equilibrium data . . . . . . . . 1560--1561
Anonymous Editorial Board . . . . . . . . . . . . ?? Andrey Asadchev and Mark S. Gordon Mixed-precision evaluation of two-electron integrals by Rys quadrature 1563--1567 Junqi Yin and D. P. Landau Massively parallel Wang--Landau sampling on multiple GPUs . . . . . . . . . . . . 1568--1573 Su Do Yi and Beom Jun Kim Force correlations in molecular and stochastic dynamics . . . . . . . . . . 1574--1577 Ezequiel E. Ferrero and Juan Pablo De Francesco and Nicolás Wolovick and Sergio A. Cannas $q$-state Potts model metastability study using optimized GPU-based Monte Carlo algorithms . . . . . . . . . . . . 1578--1587 Yan Zhao and Xuesong Li and Lin Ma Multidimensional Monte Carlo model for two-photon laser-induced fluorescence and amplified spontaneous emission . . . 1588--1595 K. C. Tseng and T. C. Kuo and S. C. Lin and C. C. Su and J. S. Wu Simulations of subsonic vortex-shedding flow past a $2$D vertical plate in the near-continuum regime by the parallelized DSMC code . . . . . . . . . 1596--1608 Liquan Mei and Yaping Chen Numerical solutions of RLW equation using Galerkin method with extrapolation techniques . . . . . . . . . . . . . . . 1609--1616 R.-L. Jiang and C. Fang and P.-F. Chen A new MHD code with adaptive mesh refinement and parallelization for astrophysics . . . . . . . . . . . . . . 1617--1633 Adnane Hamiaz and Rudy Klein and Xavier Ferrieres and Olivier Pascal and Jean-Pierre Boeuf and Jean-Rene Poirier Finite Volume Time Domain modelling of microwave breakdown and plasma formation in a metallic aperture . . . . . . . . . 1634--1640 Andrea Colagrossi and B. Bouscasse and M. Antuono and S. Marrone Particle packing algorithm for SPH schemes . . . . . . . . . . . . . . . . 1641--1653 Hanz Y. Ramírez and Alejandro Santana Two interacting electrons confined in a $3$D parabolic cylindrically symmetric potential, in presence of axial magnetic field: a finite element approach . . . . 1654--1657 Xi Chen and Z. J. Ding Solving extra-high-order Rubik's Cube problem by a dynamic simulated annealing 1658--1663 Nobuko Ohba and Shuji Ogata and Takahisa Kouno and Tomoyuki Tamura and Ryo Kobayashi Linear scaling algorithm of real-space density functional theory of electrons with correlated overlapping domains . . 1664--1673 Edoardo Di Napoli and Stefan Blügel and Paolo Bientinesi Correlations in sequences of generalized eigenproblems arising in Density Functional Theory . . . . . . . . . . . 1674--1682 Georgios Kalantzis and Dimitrios Emfietzoglou and Panagiotis Hadjidoukas A unified spatio-temporal parallelization framework for accelerated Monte Carlo radiobiological modeling of electron tracks and subsequent radiation chemistry . . . . . 1683--1695 Asimina Maniopoulou and Erlend R. M. Davidson and Ricardo Grau-Crespo and Aron Walsh and Ian J. Bush and C. Richard A. Catlow and Scott M. Woodley Introducing $k$-point parallelism into VASP . . . . . . . . . . . . . . . . . . 1696--1701 B. Pekmen and M. Tezer-Sezgin Differential quadrature solution of nonlinear Klein--Gordon and sine--Gordon equations . . . . . . . . . . . . . . . 1702--1713 Isaac Gabriel Salib and Shimon Haber Is the cutoff radius in DPD simulations with a fluid of constant density arbitrary? . . . . . . . . . . . . . . . 1714--1718 J. A. Heikkinen and T. Korpilo and S. J. Janhunen and T. P. Kiviniemi and S. Leerink and F. Ogando Interpolation for momentum conservation in $3$D toroidal gyrokinetic particle simulation of plasmas . . . . . . . . . 1719--1727 Pengfei Wei and Zhenzhou Lu and Wenrui Hao and Jun Feng and Bintuan Wang Efficient sampling methods for global reliability sensitivity analysis . . . . 1728--1743 Gary Yuan and François Gygi A distributed approach to verification and validation of electronic structure simulation data using ESTEST . . . . . . 1744--1748 Gui-Yang Huang and Chong-Yu Wang and Jian-Tao Wang Detailed check of the $ L D A + U $ and $ G G A + U $ corrected method for defect calculations in wurtzite ZnO . . 1749--1752 Elena Eremina and Yuri Eremin and Natalia Grishina and Thomas Wriedt New scheme of the Discrete Sources Method for investigation of a near field enhancement by coupled particles . . . . 1753--1759 J. R. Johansson and P. D. Nation and Franco Nori QuTiP: an open-source Python framework for the dynamics of open quantum systems 1760--1772 A. Jablonski An effective algorithm for calculating the Chandrasekhar function . . . . . . . 1773--1782 Moti Umansky and Daphne Weihs Novel algorithm and MATLAB-based program for automated power law analysis of single particle, time-dependent mean-square displacement . . . . . . . . 1783--1792 Carsten Svaneborg LAMMPS framework for dynamic bonding and an application modeling DNA . . . . . . 1793--1802 Jingjing Zheng and Steven L. Mielke and Kenneth L. Clarkson and Donald G. Truhlar MSTor: a program for calculating partition functions, free energies, enthalpies, entropies, and heat capacities of complex molecules including torsional anharmonicity . . . 1803--1812 T. Pálmai Regularization of multi-soliton form factors in sine--Gordon model . . . . . 1813--1821 A. Arbey AlterBBN: a program for calculating the BBN abundances of the elements in alternative cosmologies . . . . . . . . 1822--1831 M. F. Ciappina and T. Kirchner SymbMat: Symbolic computation of quantum transition matrix elements . . . . . . . 1832--1840 Russell M. Pitzer Atomic self-consistent-field program by the basis set expansion method: Columbus version . . . . . . . . . . . . . . . . 1841--1842 Christian Clason and Gregory von Winckel A general spectral method for the numerical simulation of one-dimensional interacting fermions . . . . . . . . . . 1843--1844
Anonymous Editorial Board . . . . . . . . . . . . ?? Barbara Schmidt and Matthias Steinhauser CRunDec: a C++ package for running and decoupling of the strong coupling and quark masses . . . . . . . . . . . . . . 1845--1848 Wanxiang Feng and Jun Wen and Jinjian Zhou and Di Xiao and Yugui Yao First-principles calculation of $ Z_2 $ topological invariants within the FP--LAPW formalism . . . . . . . . . . . 1849--1859 Luigi Brugnano and Felice Iavernaro and Donato Trigiante A two-step, fourth-order method with energy preserving properties . . . . . . 1860--1868 Elizabeth Williams and James Tickner Efficient Monte Carlo simulation of coincidence effects in radioisotope decays including $ \gamma $--$ \gamma $ angular correlations . . . . . . . . . . 1869--1876 J. L. Velasco and A. Bustos and F. Castejón and L. A. Fernández and V. Martin-Mayor and A. Tarancón ISDEP: Integrator of stochastic differential equations for plasmas . . . 1877--1883 T. Siro and A. Harju Exact diagonalization of the Hubbard model on graphics processing units . . . 1884--1889 Saeed Ovaysi and Mohammad Piri Multi-GPU acceleration of direct pore-scale modeling of fluid flow in natural porous media . . . . . . . . . . 1890--1898 Tomasz M. Gwizdalla The hybrid algorithm for the study of geometric configurations of $2$D clusters of uniformly charged classical particles . . . . . . . . . . . . . . . 1899--1903 Alberto Talamo and Zhaopeng Zhong and Yousry Gohar Monte Carlo and deterministic calculation of the Bell and Glasstone spatial correction factor . . . . . . . 1904--1910 K. Jorissen and F. D. Vila and J. J. Rehr A high performance scientific cloud computing environment for materials simulations . . . . . . . . . . . . . . 1911--1919 Ydalia Delgado Mercado and Hans Gerd Evertz and Christof Gattringer Worm algorithms for the 3-state Potts model with magnetic field and chemical potential . . . . . . . . . . . . . . . 1920--1927 André Barka and Nicolas Douchin Asymptotic simplifications for hybrid BEM/GO/PO/PTD techniques based on a Generalized Scattering Matrix approach 1928--1936 S. Tabik and L. F. Romero and P. Mimica and O. Plata and E. L. Zapata VLBI-resolution radio-map algorithms: Performance analysis of different levels of data-sharing on multi-socket, multi-core architectures . . . . . . . . 1937--1946 Enying Li and Hu Wang and Guangyao Li High dimensional model representation (HDMR) coupled intelligent sampling strategy for nonlinear problems . . . . 1947--1955 Haochen Li and Jianqiang Sun A new multi-symplectic scheme for the generalized Kadomtsev--Petviashvili equation . . . . . . . . . . . . . . . . 1956--1965 M. Gherardi and T. Jourdan and S. Le Bourdiec and G. Bencteux Hybrid deterministic/stochastic algorithm for large sets of rate equations . . . . . . . . . . . . . . . 1966--1973 S. Dalena and P. Chuychai and R. L. Mace and A. Greco and G. Qin and W. H. Matthaeus Streamline generation code for particle dynamics description in numerical models of turbulence . . . . . . . . . . . . . 1974--1985 S. Maeyama and A. Ishizawa and T.-H. Watanabe and N. Nakajima and S. Tsuji-Iio and H. Tsutsui A hybrid method of semi-Lagrangian and additive semi-implicit Runge--Kutta schemes for gyrokinetic Vlasov simulations . . . . . . . . . . . . . . 1986--1992 Waseem Kamleh and Mike Peardon Polynomial filtered HMC --- an algorithm for lattice QCD with dynamical quarks 1993--2000 Evandro F. da Silva and Mário J. de Oliveira Two versions of the threshold contact model in two dimensions . . . . . . . . 2001--2005 Carroll L. Wainwright CosmoTransitions: Computing cosmological phase transition temperatures and bubble profiles with multiple fields . . . . . 2006--2013 Timothy J. McIntyre and Alexis I. Bishop Fringe --- a Java-based finite fringe analysis package . . . . . . . . . . . . 2014--2018 J. Avellar and L. G. S. Duarte and L. A. C. P. da Mota and N. de Melo and J. E. F. Skea The Ndynamics package --- Numerical analysis of dynamical systems and the fractal dimension of boundaries . . . . 2019--2020 Dusan Vudragovi\'c and Ivana Vidanovi\'c and Antun Balaz and Paulsamy Muruganandam and Sadhan K. Adhikari C programs for solving the time-dependent Gross--Pitaevskii equation in a fully anisotropic trap . . 2021--2025
Anonymous Editorial Board . . . . . . . . . . . . ?? Masaharu Matsumoto and Yoshihiro Kajimura and Hideyuki Usui and Ikkoh Funaki and Iku Shinohara Application of a total variation diminishing scheme to electromagnetic hybrid particle-in-cell plasma simulation . . . . . . . . . . . . . . . 2027--2034 N. Dubray and D. Regnier Numerical search of discontinuities in self-consistent potential energy surfaces . . . . . . . . . . . . . . . . 2035--2041 D. Vigan\`o and J. A. Pons and J. A. Miralles A new code for the Hall-driven magnetic evolution of neutron stars . . . . . . . 2042--2053 Kevin B. Daly and Jay B. Benziger and Pablo G. Debenedetti and Athanassios Z. Panagiotopoulos Massively parallel chemical potential calculation on graphics processing units 2054--2062 Yanchao Wang and Jian Lv and Li Zhu and Yanming Ma CALYPSO: a method for crystal structure prediction . . . . . . . . . . . . . . . 2063--2070 Cathal Ó Broin and L. A. A. Nikolopoulos An OpenCL implementation for the solution of the time-dependent Schrödinger equation on GPUs and CPUs . . 2071--2080 Bokui Chen and Chuanfei Dong and Yike Liu and Wei Tong and Wenyao Zhang and Jie Liu and Binghong Wang Real-time information feedback based on a sharp decay weighted function . . . . 2081--2088 Alejandro León An efficient model for studying the dynamics of frustrated systems . . . . . 2089--2097 Ram K. Pandey and Om P. Singh and Vipul K. Baranwal and Manoj P. Tripathi An analytic solution for the space--time fractional advection-dispersion equation using the optimal homotopy asymptotic method . . . . . . . . . . . . . . . . . 2098--2106 Hyun Geun Lee and Junseok Kim An efficient and accurate numerical algorithm for the vector-valued Allen--Cahn equations . . . . . . . . . 2107--2115 H. Kohno and J. R. Myra and D. A. D'Ippolito A finite element procedure for radio-frequency sheath-plasma interactions in the ion cyclotron range of frequencies . . . . . . . . . . . . . 2116--2127 Alexei Deinega and Sajeev John Finite difference discretization of semiconductor drift-diffusion equations for nanowire solar cells . . . . . . . . 2128--2135 F. Yuasa and E. de Doncker and N. Hamaguchi and T. Ishikawa and K. Kato and Y. Kurihara and J. Fujimoto and Y. Shimizu Numerical computation of two-loop box diagrams with masses . . . . . . . . . . 2136--2144 Bernd A. Berg and Hao Wu Fortran code for $ {\rm SU}(3) $ lattice gauge theory with and without MPI checkerboard parallelization . . . . . . 2145--2157 Feng Feng \$Apart: a generalized {Mathematica} {{\tt Apart}} function . . . . . . . . . 2158--2164 Florian Staub and Thorsten Ohl and Werner Porod and Christian Speckner A tool box for implementing supersymmetric models . . . . . . . . . 2165--2206 Lutz Foucar and Anton Barty and Nicola Coppola and Robert Hartmann and Peter Holl and Uwe Hoppe and Stephan Kassemeyer and Nils Kimmel and Jochen Küpper and Mirko Scholz and Simone Techert and Thomas A. White and Lothar Strüder and Joachim Ullrich CASS--CFEL--ASG software suite . . . . . 2207--2213 Alfonso García-Parrado Gómez-Lobo and José M. Martín-García Spinors: a Mathematica package for doing spinor calculus in General Relativity 2214--2225 Gonzalo Alvarez Implementation of the $ {\rm SU}(2) $ Hamiltonian symmetry for the DMRG algorithm . . . . . . . . . . . . . . . 2226--2232 Victor Liu and Shanhui Fan $ S^4 $: a free electromagnetic solver for layered periodic structures . . . . 2233--2244 A. Buraczewski and M. Stobi\'nska Numerical model for macroscopic quantum superpositions based on phase-covariant quantum cloning . . . . . . . . . . . . 2245--2253 Priscila de Aquino and William Link and Fabio Maltoni and Olivier Mattelaer and Tim Stelzer ALOHA: Automatic libraries of helicity amplitudes for Feynman diagram computations . . . . . . . . . . . . . . 2254--2263 Piotr Magierski and Gabriel Wlazlowski LINPRO: Linear inverse problem library for data contaminated by statistical noise . . . . . . . . . . . . . . . . . 2264--2271 Miguel A. L. Marques and Micael J. T. Oliveira and Tobias Burnus Libxc: a library of exchange and correlation functionals for density functional theory . . . . . . . . . . . 2272--2281 Daniel Kuchelmeister and Thomas Müller and Marco Ament and Günter Wunner and Daniel Weiskopf GPU-based four-dimensional general-relativistic ray tracing . . . . 2282--2290 Amna Noreen and Kåre Olaussen High precision series solutions of differential equations: Ordinary and regular singular points of second order ODEs . . . . . . . . . . . . . . . . . . 2291--2297 Renato M. Fonseca Calculating the renormalisation group equations of a SUSY model with Susyno 2298--2306 H. Hluchá and H. Eberl and W. Frisch SFOLD --- a program package for calculating two-body sfermion decays at full one-loop level in the MSSM . . . . 2307--2312 J. Avellar and L. G. S. Duarte and L. A. C. P. da Mota PSsolver: a Maple implementation to solve first order ordinary differential equations with Liouvillian solutions . . 2313--2314
Anonymous Editorial Board . . . . . . . . . . . . ?? Tarik Hadzibeganovic and F. Welington S. Lima and Dietrich Stauffer Evolution of tag-mediated altruistic behavior in one-shot encounters on large-scale complex networks . . . . . . 2315--2321 M. Arioli and S. Gratton Linear regression models, least-squares problems, normal equations, and stopping criteria for the conjugate gradient method . . . . . . . . . . . . . . . . . 2322--2336 T. V. S. Sekhar and B. Hema Sundar Raju An efficient higher order compact scheme to capture heat transfer solutions in spherical geometry . . . . . . . . . . . 2337--2345 P. J. Knight and A. Thyagaraja and T. D. Edwards and J. Hein and M. Romanelli and K. G. McClements CENTORI: a global toroidal electromagnetic two-fluid plasma turbulence code . . . . . . . . . . . . 2346--2363 Ki-Hwan Kim and Q-Han Park Overlapping computation and communication of three-dimensional FDTD on a GPU cluster . . . . . . . . . . . . 2364--2369 Alan R. Levin and Deyin Zhang and Eric Polizzi FEAST fundamental framework for electronic structure calculations: Reformulation and solution of the muffin-tin problem . . . . . . . . . . . 2370--2375 Shin-ichi Satake and Hajime Yoshimori and Takayuki Suzuki Optimizations of a GPU accelerated heat conduction equation by a programming of CUDA Fortran from an analysis of a PTX file . . . . . . . . . . . . . . . . . . 2376--2385 Fernando Casas and Ander Murua and Mladen Nadinic Efficient computation of the Zassenhaus formula . . . . . . . . . . . . . . . . 2386--2391 V. Khoromskaia and D. Andrae and B. N. Khoromskij Fast and accurate $3$D tensor calculation of the Fock operator in a general basis . . . . . . . . . . . . . 2392--2404 M. Joulaian and A. Pishevar and S. Khajepor and F. Schmid and Y. Afshar A new algorithm for simulating flows of conducting fluids in the presence of electric fields . . . . . . . . . . . . 2405--2412 Ram Jiwari A Haar wavelet quasilinearization approach for numerical simulation of Burgers' equation . . . . . . . . . . . 2413--2423 Tiziano Leidi and Giulio Scocchi and Loris Grossi and Simone Pusterla and Claudio D'Angelo and Jean-Philippe Thiran and Alberto Ortona Computing effective properties of random heterogeneous materials on heterogeneous parallel processors . . . . . . . . . . 2424--2433 Frederick Ira Moxley III and Tim Byrnes and Fumitaka Fujiwara and Weizhong Dai A generalized finite-difference time-domain quantum method for the $N$-body interacting Hamiltonian . . . . 2434--2440 Markus Q. Huber and Mario Mitter CrasyDSE: a framework for solving Dyson--Schwinger equations . . . . . . . 2441--2457 W. Porod and F. Staub SPheno 3.1: extensions including flavour, CP-phases and models beyond the MSSM . . . . . . . . . . . . . . . . . . 2458--2469 A. A. Azooz and S. H. Al-Nia'emi and M. A. Al-Jubbori A parameterization of nuclear track profiles in CR-39 detector . . . . . . . 2470--2479 Anton Nazarov \tt Affine.m --- Mathematica package for computations in representation theory of finite-dimensional and affine Lie algebras . . . . . . . . . . . . . . . . 2480--2493 Ján Busa, Jr. and Shura Hayryan and Ming-Chya Wu and Ján Busa and Chin-Kun Hu ARVO-CL: the OpenCL version of the ARVO package --- An efficient tool for computing the accessible surface area and the excluded volume of proteins via analytical equations . . . . . . . . . . 2494--2497
Anonymous Editorial Board . . . . . . . . . . . . ?? Beatrice Paternoster Present state-of-the-art in exponential fitting. A contribution dedicated to Liviu Ixaru on his 70th birthday . . . . 2499--2512 Liang Chen and Cheng Lv and Xunya Jiang A re-formulation of the transfer matrix method for calculating wave-functions in higher dimensional disordered open systems . . . . . . . . . . . . . . . . 2513--2518 V. V. Karasiev and S. B. Trickey Issues and challenges in orbital-free density functional calculations . . . . 2519--2527 Marcelo Fiori and J. E. Miraglia New approach for approximating the continuum wave function by Gaussian basis set . . . . . . . . . . . . . . . 2528--2534 Suzanne Varet and Sidonie Lefebvre and Gérard Durand and Antoine Roblin and Serge Cohen Effective discrepancy and numerical experiments . . . . . . . . . . . . . . 2535--2541 C. S. Bresolin and A. A. M. Oliveira An algorithm based on collision theory for the lattice Boltzmann simulation of isothermal mass diffusion with chemical reaction . . . . . . . . . . . . . . . . 2542--2549 K.-M. Lin and M.-H. Hu and C.-T. Hung and J.-S. Wu and F.-N. Hwang and Y.-S. Chen and G. Cheng A parallel hybrid numerical algorithm for simulating gas flow and gas discharge of an atmospheric-pressure plasma jet . . . . . . . . . . . . . . . 2550--2560 Gabriel Voitcu and Marius Echim and Richard Marchand Comparative study of forward and backward test-kinetic simulation approaches . . . . . . . . . . . . . . . 2561--2569 M. Antuono and A. Colagrossi and S. Marrone Numerical diffusive terms in weakly-compressible SPH schemes . . . . 2570--2580 Alejandro Soba and Edgar Alejandro Bea and Guillaume Houzeaux and Hadrien Calmet and José María Cela Real-space density functional theory and time dependent density functional theory using finite/infinite element methods 2581--2588 E. Hirvijoki and A. Snicker and T. Korpilo and P. Lauber and E. Poli and M. Schneller and T. Kurki-Suonio Alfvén eigenmodes and neoclassical tearing modes for orbit-following implementations . . . . . . . . . . . . 2589--2593 Santos B. Yuste and Joaquín Quintana-Murillo A finite difference method with non-uniform timesteps for fractional diffusion equations . . . . . . . . . . 2594--2600 R. Krivec Numerical regularization of Klauder effect in QLM . . . . . . . . . . . . . 2601--2607 J.-L. Fattebert and D. F. Richards and J. N. Glosli Dynamic load balancing algorithm for molecular dynamics based on Voronoi cells domain decompositions . . . . . . 2608--2615 Suman Sinha Performance of Wang--Landau algorithm in lattice model of liquid crystals . . . . 2616--2621 Darko Veberi\vc Lambert $W$ function for applications in physics . . . . . . . . . . . . . . . . 2622--2628 T. A. Heltemes and G. A. Moses BADGER v1.0: a Fortran equation of state library . . . . . . . . . . . . . . . . 2629--2646
Anonymous Editorial Board . . . . . . . . . . . . ?? Anonymous Computer Physics Communications --- List of Editors . . . . . . . . . . . . . . . iv--v Fuyuki Shimojo and Satoshi Ohmura and Weiwei Mou and Rajiv K. Kalia and Aiichiro Nakano and Priya Vashishta Large nonadiabatic quantum molecular dynamics simulations on parallel computers . . . . . . . . . . . . . . . 1--8 Weile Jia and Zongyan Cao and Long Wang and Jiyun Fu and Xuebin Chi and Weiguo Gao and Lin-Wang Wang The analysis of a plane wave pseudopotential density functional theory code on a GPU machine . . . . . . 9--18 Katherine Baker and Andrij Baumketner and Yuchun Lin and Shaozhong Deng and Donald Jacobs and Wei Cai ICSM: an order $N$ method for calculating electrostatic interactions added to TINKER . . . . . . . . . . . . 19--26 E. Voyiatzis Mechanical properties and elastic constants of atomistic systems through the stress-fluctuation formalism . . . . 27--33 Tarcísio M. Rocha Filho Solving the Vlasov equation for one-dimensional models with long range interactions on a GPU . . . . . . . . . 34--39 Yukihiro Komura and Yutaka Okabe Multi-GPU-based Swendsen--Wang multi-cluster algorithm for the simulation of two-dimensional $q$-state Potts model . . . . . . . . . . . . . . 40--44 Eliseo García and Lorena Lozano and Maria-Jesús Algar and Felipe Cátedra A study of the efficiency of the parallelization of a high frequency electromagnetic approach for the computation of radiation and scattering considering multiple bounces . . . . . . 45--50 Changfeng Xue and Shaozhong Deng Coulomb Green's function and image potential near a planar diffuse interface, revisited . . . . . . . . . . 51--59 Bin Lin Parametric cubic spline method for the solution of the nonlinear Schrödinger equation . . . . . . . . . . . . . . . . 60--65 T. D. Young and E. Romero and J. E. Roman Parallel finite element density functional computations exploiting grid refinement and subspace recycling . . . 66--72 Liang Li and Ting-Zhu Huang and Guang-Hui Cheng and Yan-Fei Jing and Zhi-Gang Ren and Hou-Biao Li Solution to $3$-D electromagnetic problems discretized by a hybrid FEM/MOM method . . . . . . . . . . . . . . . . . 73--78 Paolo Greppi and Elisabetta Arato Efficient computation paths for the systematic analysis of sensitivities . . 79--85 Dingwen Deng and Chengjian Zhang A family of new fourth-order solvers for a nonlinear damped wave equation . . . . 86--101 Yutaka Utsuno and Noritaka Shimizu and Takaharu Otsuka and Takashi Abe Efficient computation of Hamiltonian matrix elements between non-orthogonal Slater determinants . . . . . . . . . . 102--108 Andreas Windisch and Reinhard Alkofer and Gundolf Haase and Manfred Liebmann Examining the analytic structure of Green's functions: Massive parallel complex integration using GPUs . . . . . 109--116 Takumi Doi and Michael G. Endres Unified contraction algorithm for multi-baryon correlators on the lattice 117--123 Nuno Cardoso and Paulo J. Silva and Pedro Bicudo and Orlando Oliveira Landau gauge fixing on GPUs . . . . . . 124--129 Yezhi Lin and Yinping Liu and Zhibin Li Symbolic computation of analytic approximate solutions for nonlinear fractional differential equations . . . 130--141 Gianluca Col\`o and Ligang Cao and Nguyen Van Giai and Luigi Capelli Self-consistent RPA calculations with Skyrme-type interactions: the \tt skyrme\_rpa program . . . . . . . . . . 142--161 J. J. Galiana-Merino and J. L. Rosa-Herranz and S. Rosa-Cintas and J. J. Martinez-Espla SeismicWaveTool: Continuous and discrete wavelet analysis and filtering for multichannel seismic data . . . . . . . 162--171 I. I. Gontchar and M. V. Chushnyakova A C-code for the double folding interaction potential for reactions involving deformed target nuclei . . . . 172--182 Alexander P. Bakulev and Vyacheslav L. Khandramai FAPT: a Mathematica package for calculations in QCD Fractional Analytic Perturbation Theory . . . . . . . . . . 183--193 O. Coufal A method for the accurate and smooth approximation of standard thermodynamic functions . . . . . . . . . . . . . . . 194--200 Graham R. Dennis and Joseph J. Hope and Mattias T. Johnsson XMDS2: Fast, scalable simulation of coupled stochastic partial differential equations . . . . . . . . . . . . . . . 201--208 Seth Quackenbush and Ryan Gavin and Ye Li and Frank Petriello $W$ physics at the LHC with FEWZ 2.1 . . 209--214 R. A. Sen'kov and M. Horoi and V. G. Zelevinsky A high-performance Fortran code to calculate spin- and parity-dependent nuclear level densities . . . . . . . . 215--221 Eric Conte and Benjamin Fuks and Guillaume Serret MadAnalysis 5, a user-friendly framework for collider phenomenology . . . . . . . 222--256 Jaroslaw Adam Miszczak Employing online quantum random number generators for generating truly random quantum states in Mathematica . . . . . 257--258
Anonymous Editorial Board . . . . . . . . . . . . ?? J. A. Plascak and P. H. L. Martins Probability distribution function of the order parameter: Mixing fields and universality . . . . . . . . . . . . . . 259--269 Satrajit Adhikari and António J. C. Varandas The coupled $3$D wave packet approach for triatomic reactive scattering in hyperspherical coordinates . . . . . . . 270--283 C. D. Sudheer and S. Krishnan and A. Srinivasan and P. R. C. Kent Dynamic load balancing for petascale quantum Monte Carlo applications: the Alias method . . . . . . . . . . . . . . 284--292 O. Sauter and S. Yu. Medvedev Tokamak coordinate conventions: $ C O C O S $ . . . . . . . . . . . . . . . . . 293--302 Dongling Wang and Aiguo Xiao and Xueyang Li Parametric symplectic partitioned Runge--Kutta methods with energy-preserving properties for Hamiltonian systems . . . . . . . . . . 303--310 Jochen Gerhard and Volker Lindenstruth and Marcus Bleicher Relativistic hydrodynamics on graphic cards . . . . . . . . . . . . . . . . . 311--319 Igor V. Sokolov Alternating-order interpolation in a charge-conserving scheme for particle-in-cell simulations . . . . . . 320--328 M. Bernaschi and M. Bisson and M. Fatica and S. Melchionna and S. Succi Petaflop hydrokinetic simulations of complex flows on massive GPU clusters 329--341 Jin-Chun Li and Ping Qian and Zhen-Feng Zhang and Ying Liu and Xiao-Jian Yuan and Jiang Shen and Nan-Xian Chen Theoretical study of structure and lattice vibrations of R$_3$Co$_{11 - x}$Fe$_x$B$_4$ (R = Nd, Gd) . . . . . . 342--347 Hong Jiang and Ricardo I. Gómez-Abal and Xin-Zheng Li and Christian Meisenbichler and Claudia Ambrosch-Draxl and Matthias Scheffler FHI-gap: a $ G W $ code based on the all-electron augmented plane wave method 348--366 Jun Liu Least square based method for obtaining one-particle spectral functions from temperature Green functions . . . . . . 367--373 Scott Le Grand and Andreas W. Götz and Ross C. Walker SPFP: Speed without compromise --- a mixed precision model for GPU accelerated molecular dynamics simulations . . . . . . . . . . . . . . 374--380 Zhi Shang Performance analysis of large scale parallel CFD computing based on Code\_Saturne . . . . . . . . . . . . . 381--386 Y. Pavlyukh and J. Berakdar Electron repulsion integrals for self-energy calculations . . . . . . . . 387--395 Sophia Borowka and Jonathon Carter and Gudrun Heinrich Numerical evaluation of multi-loop integrals for arbitrary kinematics with SecDec 2.0 . . . . . . . . . . . . . . . 396--408 S. Mickevicius and D. Germanas and R. K. Kalinauskas Revised calculation of four-particle harmonic-oscillator transformation brackets matrix . . . . . . . . . . . . 409--413 R. Chudoba and V. Sadílek and R. Rypl and M. Vorechovský Using Python for scientific computing: Efficient and flexible evaluation of the statistical characteristics of functions with multivariate random inputs . . . . 414--427 V. B. Zlokazov and V. K. Utyonkov and Yu. S. Tsyganov VSHEC --- a program for the automatic spectrum calibration . . . . . . . . . . 428--431 Mikhail S. Litsarev The DEPOSIT computer code: Calculations of electron-loss cross-sections for complex ions colliding with neutral atoms . . . . . . . . . . . . . . . . . 432--439 A. Jablonski Improved algorithm for calculating the Chandrasekhar function . . . . . . . . . 440--442 C. Angeli and R. Cimiraglia Automated evaluation of matrix elements between contracted wavefunctions: a Mathematica version of the FRODO program 443--444
Anonymous Editorial Board . . . . . . . . . . . . ?? Rio Yokota and L. A. Barba and Tetsu Narumi and Kenji Yasuoka Petascale turbulence simulation using a highly parallel fast multipole method on GPUs . . . . . . . . . . . . . . . . . . 445--455 Simon F. Portegies Zwart and Stephen L. W. McMillan and Arjen van Elteren and F. Inti Pelupessy and Nathan de Vries Multi-physics simulations using a hierarchical interchangeable software interface . . . . . . . . . . . . . . . 456--468 J. Francés and S. Bleda and C. Neipp and A. Márquez and I. Pascual and A. Beléndez Performance analysis of the FDTD method applied to holographic volume gratings: Multi-core CPU versus GPU computing . . 469--479 Jing Shen and Wei E. I. Sha and Zhixiang Huang and Mingsheng Chen and Xianliang Wu High-order symplectic FDTD scheme for solving a time-dependent Schrödinger equation . . . . . . . . . . . . . . . . 480--492 B.-W. Jeng and Y.-S. Wang and C.-S. Chien A two-parameter continuation algorithm for vortex pinning in rotating Bose--Einstein condensates . . . . . . . 493--508 Nuno Cardoso and Pedro Bicudo Generating $ {\rm SU}(N_c) $ pure gauge lattice QCD configurations on GPUs with CUDA . . . . . . . . . . . . . . . . . . 509--518 Martin Lüscher and Stefan Schaefer Lattice QCD with open boundary conditions and twisted-mass reweighting 519--528 Ali Shokri and Abbas Ali Shokri The new class of implicit $L$-stable hybrid Obrechkoff method for the numerical solution of first order initial value problems . . . . . . . . . 529--531 Florian De Vuyst and Francesco Salvarani GPU-accelerated numerical simulations of the Knudsen gas on time-dependent domains . . . . . . . . . . . . . . . . 532--536 Marco D. Mazzeo Fast discontinuous Galerkin lattice-Boltzmann simulations on GPUs via maximal kernel fusion . . . . . . . 537--549 Hossein Ebadi Bound state calculation of two-component Klein--Gordon equation with damped-relaxation technique . . . . . . 550--556 Baoming Tang and Ehsan Khatami and Marcos Rigol A short introduction to numerical linked-cluster expansions . . . . . . . 557--564 Zohreh Asgari and S. M. Hosseini Numerical solution of two-dimensional sine-Gordon and MBE models using Fourier spectral and high order explicit time stepping methods . . . . . . . . . . . . 565--572 Antonio Brunetti A fast fine-grained genetic algorithm for spectrum fitting: an application to X-ray spectra . . . . . . . . . . . . . 573--578 N. Mohankumar and Ajay Rawat Some comments on the evaluation of the Chandrasekhar $H$ function . . . . . . . 579--581 K. Parand and J. A. Rad Kansa method for the solution of a parabolic equation with an unknown spacewise-dependent coefficient subject to an extra measurement . . . . . . . . 582--595 Hai P. Le and Jean-Luc Cambier and Lord K. Cole GPU-based flow simulation with detailed chemical kinetics . . . . . . . . . . . 596--606 D. W. L. Sprung and M. I. Betti and W. van Dijk Finite Fourier transforms computed by a modified Filon--Euler--Maclaurin method 607--616 Jose M. Domínguez and Alejandro J. C. Crespo and Moncho Gómez-Gesteira Optimization strategies for CPU and GPU implementations of a smoothed particle hydrodynamics method . . . . . . . . . . 617--627 Edan Lerner and Gustavo Düring and Matthieu Wyart Simulations of driven overdamped frictionless hard spheres . . . . . . . 628--637 A. Galonska and P. Gibbon and F. Imbeaux and Y. Frauel and B. Guillerminet and G. Manduchi and F. Wolf and ITM-TF contributors Parallel universal access layer: a scalable I/O library for integrated tokamak modeling . . . . . . . . . . . . 638--646 S. J. Ahmed and J. Kivinen and B. Zaporzan and L. Curiel and S. Pichardo and O. Rubel BerryPI: a software for studying polarization of crystalline solids with WIEN2k density functional all-electron package . . . . . . . . . . . . . . . . 647--651 Mohammad Poursina and Kurt S. Anderson Canonical ensemble simulation of biopolymers using a coarse-grained articulated generalized divide-and-conquer scheme . . . . . . . 652--660 Roberto da Silva and Mendeli H. Vainstein and Luis C. Lamb and Sandra D. Prado A simple non-Markovian computational model of the statistics of soccer leagues: Emergence and scaling effects 661--670 G. Lanzafame Implicit integrations for SPH in semi-Lagrangian approach: Application to the accretion disc modeling in a microquasar . . . . . . . . . . . . . . 671--688 Chris Johnson and A. D. Kennedy Numerical determination of partial spectrum of Hermitian matrices using a Lánczos method with selective reorthogonalization . . . . . . . . . . 689--697 L. Basso and A. Belyaev and D. Chowdhury and M. Hirsch and S. Khalil and S. Moretti and B. O'Leary and W. Porod and F. Staub Proposal for generalised supersymmetry Les Houches Accord for see-saw models and PDG numbering scheme . . . . . . . . 698--719 M. Alvaro and E. Cebrián and M. Carretero and L. L. Bonilla Numerical methods for kinetic equations in semiconductor superlattices . . . . . 720--731 Antonio Souto-Iglesias and Fabricio Maci\`a and Leo M. González and Jose L. Cercos-Pita On the consistency of MPS . . . . . . . 732--745 E. Comesaña and M. Aldegunde and A. J. Garcia-Loureiro Simulation of the spin polarization and the charge transport in Zener tunnel junctions based on ferromagnetic GaAs and ZnO . . . . . . . . . . . . . . . . 746--756 Dieter Bingemann Statistical identification of structural rearrangement events in molecular dynamics trajectories . . . . . . . . . 757--764 HanPing Hu and LingFeng Liu and NaiDa Ding Pseudorandom sequence generator based on the Chen chaotic system . . . . . . . . 765--768 P. J. J. Luukko and E. Räsänen Imaginary time propagation code for large-scale two-dimensional eigenvalue problems in magnetic fields . . . . . . 769--776 G. L. Masala and B. Golosio and P. Oliva An improved Marching Cube algorithm for $3$D data segmentation . . . . . . . . . 777--782 Ashton S. Reimer and Alexei F. Cheviakov A Matlab-based finite-difference solver for the Poisson problem with mixed Dirichlet--Neumann boundary conditions 783--798 Jacek Kobus A finite difference Hartree--Fock program for atoms and diatomic molecules 799--811 Marco Caliari and Stefan Rainer GSGPEs: a MATLAB code for computing the ground state of systems of Gross--Pitaevskii equations . . . . . . 812--823 J. Broeckhove and K. Vanmechelen An adaptor for C++ callbacks with C and Fortran libraries . . . . . . . . . . . 824--832 Yu. V. Suleimanov and J. W. Allen and W. H. Green RPMDrate: Bimolecular chemical reaction rates from ring polymer molecular dynamics . . . . . . . . . . . . . . . . 833--840 Martin Hoefling and Helmut Grubmüller In silico FRET from simulated dye dynamics . . . . . . . . . . . . . . . . 841--852 Y. G. Chen and J. B. Wang Qcompiler: Quantum compilation with the CSD method . . . . . . . . . . . . . . . 853--865 R. Marchand and D. Purschke and J. Samson LEOrbit: a program to calculate parameters relevant to modeling Low Earth Orbit spacecraft-plasma interaction . . . . . . . . . . . . . . 866--872 David A. Bonhommeau and Marie-Pierre Gaigeot MCMC$^2$: a Monte Carlo code for multiply-charged clusters . . . . . . . 873--884 Carl McBride and Eva G. Noya and Carlos Vega A computer program to evaluate the NVM propagator for rigid asymmetric tops for use in path integral simulations of rigid bodies . . . . . . . . . . . . . . 885--890 Raoul D. Schram and Gerard T. Barkema and Rob H. Bisseling SAWdoubler: a program for counting self-avoiding walks . . . . . . . . . . 891--898 Debtosh Chowdhury and Raghuveer Garani and Sudhir K. Vempati SuSeFLAV 1.2: Program for supersymmetric mass spectra with seesaw mechanism and rare lepton flavor violating decays . . 899--918 Borut Paul Kersevan and Elzbieta Richter-W\kas The Monte Carlo event generator AcerMC versions 2.0 to 3.8 with interfaces to PYTHIA 6.4, HERWIG 6.5 and ARIADNE 4.1 919--985 G. Bevilacqua and M. Czakon and M. V. Garzelli and A. van Hameren and A. Kardos and C. G. Papadopoulos and R. Pittau and M. Worek HELAC-NLO . . . . . . . . . . . . . . . 986--997 Oliver Brein and Robert V. Harlander and Tom J. E. Zirke vh@nnlo-Higgs Strahlung at hadron colliders . . . . . . . . . . . . . . . 998--1003 A. Crivellin and J. Rosiek and P. H. Chankowski and A. Dedes and S. Jäger and P. Tanedo SUSY\_FLAVOR v2: a computational tool for FCNC and CP-violating processes in the MSSM . . . . . . . . . . . . . . . . 1004--1032 Lorenzo Botto A geometric multigrid Poisson solver for domains containing solid inclusions . . 1033--1044 G. F. Jefferson and J. Carminati ASP: Automated symbolic computation of approximate symmetries of differential equations . . . . . . . . . . . . . . . 1045--1063 B. Azadegan A Mathematica package for calculation of planar channeling radiation spectra of relativistic electrons channeled in a diamond-structure single crystal (quantum approach) . . . . . . . . . . . 1064--1069 Xian-You Wang and Xing-Gang Wu GENXICC2.1: an improved version of GENXICC for hadronic production of doubly heavy baryons . . . . . . . . . . 1070--1074 Alexei Bazavov and Bernd A. Berg Program package for multicanonical simulations of $ {\rm U}(1) $ lattice gauge theory --- Second version . . . . 1075--1076
Anonymous Editorial Board . . . . . . . . . . . . ?? T. H. Cho and W. S. Su and T. C. Leung and Wei Ren and C. T. Chan Electronic and optical properties of bundled single-walled carbon nanotubes investigated by the first-principles method . . . . . . . . . . . . . . . . . 1077--1085 S. A. Galindo-Torres and A. Scheuermann and L. Li and D. M. Pedroso and D. J. Williams A Lattice Boltzmann model for studying transient effects during imbibition-drainage cycles in unsaturated soils . . . . . . . . . . . 1086--1093 Shamsul Qamar and Sidrah Ahmed The space--time CE/SE method for solving one-dimensional special relativistic magnetohydrodynamics equations . . . . . 1094--1105 Lin Zhang and Jie Ouyang and Xiaohua Zhang The variational multiscale element free Galerkin method for MHD flows at high Hartmann numbers . . . . . . . . . . . . 1106--1118 Y. Afshar and F. Schmid and A. Pishevar and S. Worley Exploiting seeding of random number generators for efficient domain decomposition parallelization of dissipative particle dynamics . . . . . 1119--1128 Jonathan D. Halverson and Thomas Brandes and Olaf Lenz and Axel Arnold and Stas Bevc and Vitaliy Starchenko and Kurt Kremer and Torsten Stuehn and Dirk Reith ESPResSo++: a modern multiscale simulation package for soft matter systems . . . . . . . . . . . . . . . . 1129--1149 Hong Fu and Limin Zheng and Minghui Yang Accelerating modified Shepard interpolated potential energy calculations using graphics processing units . . . . . . . . . . . . . . . . . 1150--1154 Johannes Zierenberg and Martin Marenz and Wolfhard Janke Scaling properties of a parallel implementation of the multicanonical algorithm . . . . . . . . . . . . . . . 1155--1160 Yong Zhang and Ting-Zhu Huang and Wei Shao and Sheng-Jian Lai Some new strategies for RCM ordering in solving electromagnetic scattering problems . . . . . . . . . . . . . . . . 1161--1164 Peter Wittek and Fernando M. Cucchietti A second-order distributed Trotter--Suzuki solver with a hybrid CPU--GPU kernel . . . . . . . . . . . . 1165--1171 Andriy O. Lyakhov and Artem R. Oganov and Harold T. Stokes and Qiang Zhu New developments in evolutionary structure prediction algorithm USPEX . . 1172--1182 Markus Hopfer and Reinhard Alkofer and Gundolf Haase Solving the ghost-gluon system of Yang--Mills theory on GPUs . . . . . . . 1183--1190 C. Teijeiro and G. Sutmann and G. L. Taboada and J. Touriño Parallel Brownian dynamics simulations with the message-passing and PGAS programming models . . . . . . . . . . . 1191--1202 G. Demeter Solving the Maxwell--Bloch equations for resonant nonlinear optics using GPUs . . 1203--1210 Stéphane Balac and Fabrice Mahé Embedded Runge--Kutta scheme for step-size control in the interaction picture method . . . . . . . . . . . . . 1211--1219 J. S. Lee and M. Carena and J. Ellis and A. Pilaftsis and C. E. M. Wagner CPsuperH2.3: an updated tool for phenomenology in the MSSM with explicit CP violation . . . . . . . . . . . . . . 1220--1233 J. R. Johansson and P. D. Nation and Franco Nori QuTiP 2: a Python framework for the dynamics of open quantum systems . . . . 1234--1240 Shuang Gao and Gregory D. Peterson GASPRNG: GPU accelerated scalable parallel random number generator library 1241--1249 R. M. Caplan NLSEmagic: Nonlinear Schrödinger equation multi-dimensional Matlab-based GPU-accelerated integrators using compact high-order schemes . . . . . . . 1250--1271 Kyungwon Chun and Huioon Kim and Hyounggyu Kim and Kil Su Jung and Youngjoo Chung GMES: a Python package for solving Maxwell's equations using the FDTD method . . . . . . . . . . . . . . . . . 1272--1279 Hartmut Hafermann and Philipp Werner and Emanuel Gull Efficient implementation of the continuous-time hybridization expansion quantum impurity solver . . . . . . . . 1280--1286 V. Ledoux and M. Van Daele Automatic computation of quantum-mechanical bound states and wavefunctions . . . . . . . . . . . . . 1287--1296 I. Honkonen and S. von Alfthan and A. Sandroos and P. Janhunen and M. Palmroth Parallel grid library for rapid and flexible simulation development . . . . 1297--1309 J. M. Franco and I. Gómez Some procedures for the construction of high-order exponentially fitted Runge--Kutta--Nyström methods of explicit type . . . . . . . . . . . . . . . . . . 1310--1321 William K. Ridgeway and David P. Millar and James R. Williamson Vectorized data acquisition and fast triple-correlation integrals for Fluorescence Triple Correlation Spectroscopy . . . . . . . . . . . . . . 1322--1332 M. Giannotti and M. Wise and A. Mohammed MESAFace, a graphical interface to analyze the MESA output . . . . . . . . 1333--1338 Enikö J. M. Madarassy and Viktor T. Toth Numerical simulation code for self-gravitating Bose--Einstein condensates . . . . . . . . . . . . . . 1339--1343 I. V. Grossu and I. Grossu and D. Felea and C. Besliu and Al. Jipa and T. Esanu and C. C. Bordeianu and E. Stan Hyper-Fractal Analysis: a visual tool for estimating the fractal dimension of $4$D objects . . . . . . . . . . . . . . 1344--1345 I. V. Grossu and C. Besliu and Al. Jipa and D. Felea and T. Esanu and E. Stan and C. C. Bordeianu Chaos Many-Body Engine v03: a new version of code C# for chaos analysis of relativistic many-body systems with reactions . . . . . . . . . . . . . . . 1346--1347 N. S. Scott Editor's corrigendum to ``Phonon dispersion measured directly from molecular dynamics simulations'' [Comput. Phys. Comm. \bf 182 (10) (2011) 2201--2207] . . . . . . . . . . . . . . 1348--1348
Anonymous Editorial Board . . . . . . . . . . . . ?? Shamsul Qamar and Waqas Ashraf Application of central schemes for solving radiation hydrodynamical models 1349--1363 Chaofeng Hou and Ji Xu and Peng Wang and Wenlai Huang and Xiaowei Wang Efficient GPU-accelerated molecular dynamics simulation of solid covalent crystals . . . . . . . . . . . . . . . . 1364--1371 Leonardo Pacifici and Danilo Nalli and Antonio Lagan\`a Quantum reactive scattering on innovative computing platforms . . . . . 1372--1380 R. López and J. F. San-Juan Astrody$^{\rm Web}_{\rm tools}$: an e-Science project in Astrodynamics and Celestial Mechanics fields . . . . . . . 1381--1386 Shyamal Bhar and Soumen Kumar Roy A comparison of the performance of Wang--Landau-Transition-Matrix algorithm with Wang--Landau algorithm for the determination of the joint density of states for continuous spin models . . . 1387--1394 Mohammed F. Hadi and Seyed A. Esmaeili CUDA Fortran acceleration for the finite-difference time-domain method . . 1395--1400 Wenrui Hao and Zhenzhou Lu and Luyi Li A new interpretation and validation of variance based importance measures for models with correlated inputs . . . . . 1401--1413 Zheyong Fan and Topi Siro and Ari Harju Accelerated molecular dynamics force evaluation on graphics processing units for thermal conductivity calculations 1414--1425 Carlos E. Fiore and Cláudio J. DaSilva Equivalence between microcanonical ensembles for lattice models . . . . . . 1426--1431 Lajos Szalmás Accelerated discrete velocity method for axial-symmetric gaseous flows . . . . . 1432--1438 Abhishek Chowdhury and Asit K. De and Sangita De Sarkar and A. Harindranath and Jyotirmoy Maiti and Santanu Mondal and Anwesa Sarkar Exploring autocorrelations in two-flavor Wilson Lattice QCD using DD-HMC algorithm . . . . . . . . . . . . . . . 1439--1445 Wenbin Yu and Maxwell Blair DNAD, a simple tool for automatic differentiation of Fortran codes using dual numbers . . . . . . . . . . . . . . 1446--1452 J. Kuipers and T. Ueda and J. A. M. Vermaseren and J. Vollinga FORM version 4.0 . . . . . . . . . . . . 1453--1467 P. Homola and R. Engel and A. Pysz and H. Wilczy\'nski Simulation of ultra-high energy photon propagation with PRESHOWER 2.0 . . . . . 1468--1475 Ben-Hao Sa and Dai-Mei Zhou and Yu-Liang Yan and Bao-Guo Dong and Xu Cai PACIAE 2.1: an updated issue of the parton and hadron cascade model PACIAE 2.0 . . . . . . . . . . . . . . . . . . 1476--1479 V. B. Zlokazov VACTIV: a graphical dialog based program for an automatic processing of line and band spectra . . . . . . . . . . . . . . 1480--1481
Anonymous Editorial Board . . . . . . . . . . . . ?? A. Yu. Polyakov and T. V. Lyutyy and S. Denisov and V. V. Reva and P. Hänggi Large-scale ferrofluid simulations on graphics processing units . . . . . . . 1483--1489 Weihua Geng and Ferosh Jacob A GPU-accelerated direct-sum boundary integral Poisson--Boltzmann solver . . . 1490--1496 Michele Tuttafesta and Gianpiero Colonna and Giuseppe Pascazio Computing unsteady compressible flows using Roe's flux-difference splitting scheme on GPUs . . . . . . . . . . . . . 1497--1510 Shanshan Wang and Luming Zhang An efficient split-step compact finite difference method for cubic-quintic complex Ginzburg--Landau equations . . . 1511--1521 Jacob Finkenrath and Francesco Knechtli and Björn Leder Fermions as global correction: the QCD case . . . . . . . . . . . . . . . . . . 1522--1534 Ydalia Delgado Mercado and Christof Gattringer and Alexander Schmidt Surface worm algorithm for abelian Gauge--Higgs systems on the lattice . . 1535--1546 Haruhiko Kohno and Jean-Christophe Nave A new method for the level set equation using a hierarchical-gradient truncation and remapping technique . . . . . . . . 1547--1554 Y. Feng and T. Lunt and F. Sardei and X. Zha Implicit coupling of impurity transport at the SOL-core interface . . . . . . . 1555--1561 O. Zinchenko and H. A. De Raedt and E. Detsi and P. R. Onck and J. T. M. De Hosson Nanoporous gold formation by dealloying: a Metropolis Monte Carlo study . . . . . 1562--1569 M. Munoz Zuniga and S. Kucherenko and N. Shah Metamodelling with independent and dependent inputs . . . . . . . . . . . . 1570--1580 Bahaaudin M. Raffah and Paul C. Abbott Efficient computation of Wigner--Eisenbud functions . . . . . . . 1581--1591 M. V. Stoitsov and N. Schunck and M. Kortelainen and N. Michel and H. Nam and E. Olsen and J. Sarich and S. Wild Axially deformed solution of the Skyrme--Hartree--Fock--Bogoliubov equations using the transformed harmonic oscillator basis (II) hfbtho v2.00d: a new version of the program . . . . . . . 1592--1604 Robert V. Harlander and Stefan Liebler and Hendrik Mantler SusHi: a program for the calculation of Higgs production in gluon fusion and bottom-quark annihilation in the Standard Model and the MSSM . . . . . . 1605--1617 Silvia Bahmann and Jens Kortus EVO --- Evolutionary algorithm for crystal structure prediction . . . . . . 1618--1625 Jun Gao and Zhihua Liang and Davison E. Soper and Hung-Liang Lai and Pavel M. Nadolsky and C.-P. Yuan MEKS: a program for computation of inclusive jet cross sections at hadron colliders . . . . . . . . . . . . . . . 1626--1642
Anonymous Editorial Board . . . . . . . . . . . . ?? Bogdan Caruntu and Constantin Bota Approximate polynomial solutions of the nonlinear Lane--Emden type equations arising in astrophysics using the squared remainder minimization method 1643--1648 Won-Kwang Park and Taehoon Park Multi-frequency based location search algorithm of small electromagnetic inhomogeneities embedded in two-layered medium . . . . . . . . . . . . . . . . . 1649--1659 Zhaopeng Zhong and Alberto Talamo and Yousry Gohar Monte Carlo and deterministic computational methods for the calculation of the effective delayed neutron fraction . . . . . . . . . . . . 1660--1665 Krzysztof Cichy and Agnieszka Kujawa-Cichy and Marcin Szyniszewski Lattice Hamiltonian approach to the massless Schwinger model: Precise extraction of the mass gap . . . . . . . 1666--1672 Romain Garnier and André Barka and Olivier Pascal Efficient periodic band diagram computation using a finite element method, Arnoldi eigensolver and sparse linear system solver . . . . . . . . . . 1673--1682 Christian Ringl and Herbert M. Urbassek A simple algorithm for constructing fractal aggregates with pre-determined fractal dimension . . . . . . . . . . . 1683--1685 P. Van Liedekerke and B. Smeets and T. Odenthal and E. Tijskens and H. Ramon Solving microscopic flow problems using Stokes equations in SPH . . . . . . . . 1686--1696 Éric Germaneau and Gang Su and Qing-Rong Zheng Implementation of the modified Becke--Johnson meta-GGA functional in Quantum Espresso . . . . . . . . . . . . 1697--1700 Qingang Xiong and Bo Li and Ji Xu GPU-accelerated adaptive particle splitting and merging in SPH . . . . . . 1701--1707 Victor G. L. Alves and Simone C. Cardoso and Ademir X. da Silva Gafchromic EBT2 dosimetry via robust optimization . . . . . . . . . . . . . . 1708--1716 I. M. Khan and M. Poursina and K. S. Anderson Model transitions and optimization problem in multi-flexible-body systems: Application to modeling molecular systems . . . . . . . . . . . . . . . . 1717--1728 Alexander Belyaev and Neil D. Christensen and Alexander Pukhov CalcHEP 3.4 for collider physics within and beyond the Standard Model . . . . . 1729--1769 M. P. Ruffoni The FTS Atomic Spectrum Tool (FAST) for rapid analysis of line spectra . . . . . 1770--1776 Ondrej Certík and John E. Pask and Jirí Vackár \tt dftatom: a robust and general Schrödinger and Dirac solver for atomic structure calculations . . . . . . . . . 1777--1791 Florian Staub SARAH 3.2: Dirac gauginos, UFO output, and more . . . . . . . . . . . . . . . . 1792--1809 O. Coufal A method for the accurate and smooth approximation of standard thermodynamic functions . . . . . . . . . . . . . . . 1810--1811 I. V. Grossu and S. A. El-Shamali Hyper-Fractal Analysis v04: Implementation of a fuzzy box-counting algorithm for image analysis of artistic works . . . . . . . . . . . . . . . . . 1812--1813
Anonymous Editorial Board . . . . . . . . . . . . ?? Nazim Dugan and Luigi Genovese and Stefan Goedecker A customized $3$D GPU Poisson solver for free boundary conditions . . . . . . . . 1815--1820 Y. C. Ou and Y. H. Chiu and J. M. Lu and W. P. Su and M. F. Lin Electric modulation effect on magneto-optical spectrum of monolayer graphene . . . . . . . . . . . . . . . . 1821--1826 Nicola Varini and Davide Ceresoli and Layla Martin-Samos and Ivan Girotto and Carlo Cavazzoni Enhancement of DFT-calculations at petascale: Nuclear Magnetic Resonance, Hybrid Density Functional Theory and Car--Parrinello calculations . . . . . . 1827--1833 Frederick Ira Moxley III and David T. Chuss and Weizhong Dai A generalized finite-difference time-domain scheme for solving nonlinear Schrödinger equations . . . . . . . . . . 1834--1841 T. Makkonen and M. Groth and M. I. Airila and R. Dux and A. Janzer and T. Kurki-Suonio and T. Lunt and H. W. Mueller and T. Puetterich and E. Viezzer and ASDEX Upgrade team Synthetic Doppler spectroscopy and curvilinear camera diagnostics in the ERO code . . . . . . . . . . . . . . . . 1842--1847 J. M. Domínguez and A. J. C. Crespo and D. Valdez-Balderas and B. D. Rogers and M. Gómez-Gesteira New multi-GPU implementation for smoothed particle hydrodynamics on heterogeneous clusters . . . . . . . . . 1848--1860 Rostam Golesorkhtabar and Pasquale Pavone and Jürgen Spitaler and Peter Puschnig and Claudia Draxl ElaStic: a tool for calculating second-order elastic constants from first principles . . . . . . . . . . . . 1861--1873 Rooholah Abedian and Hojatollah Adibi and Mehdi Dehghan A high-order weighted essentially non-oscillatory (WENO) finite difference scheme for nonlinear degenerate parabolic equations . . . . . . . . . . 1874--1888 Fatin Sezgin and Tevfik Metin Sezgin Finding the best portable congruential random number generators . . . . . . . . 1889--1897 Hua Guo and Peter Arbenz and Benedikt Oswald A large-scale nonlinear eigensolver for the analysis of dispersive nanostructures . . . . . . . . . . . . . 1898--1906 Mario Schröck and Hannes Vogt Coulomb, Landau and maximally Abelian gauge fixing in lattice QCD with multi-GPUs . . . . . . . . . . . . . . . 1907--1919 Zelimir Marojevi\'c and Ertan Göklü and Claus Lämmerzahl Energy eigenfunctions of the $1$D Gross--Pitaevskii equation . . . . . . . 1920--1930 Thomas Fischbacher and Franziska Synatschke-Czerwonka FlowPy --- a numerical solver for functional renormalization group equations . . . . . . . . . . . . . . . 1931--1945 G. Opletal and T. C. Petersen and I. K. Snook and S. P. Russo HRMC\_2.0: Hybrid Reverse Monte Carlo method with silicon, carbon and germanium potentials . . . . . . . . . . 1946--1957 Ian A. Cosden and Jennifer R. Lukes A hybrid atomistic-continuum model for fluid flow using LAMMPS and OpenFOAM . . 1958--1965 Bo Xiao and Hao Wang and Shou-hua Zhu A simple algorithm for automatic Feynman diagram generation . . . . . . . . . . . 1966--1972 Zhi-Wei Huang and Jueping Liu NumExp: Numerical epsilon expansion of hypergeometric functions . . . . . . . . 1973--1980 Simon Badger and Benedikt Biedermann and Peter Uwer and Valery Yundin Numerical evaluation of virtual corrections to multi-jet production in massless QCD . . . . . . . . . . . . . . 1981--1998 G. Beliakov and D. Creighton and M. Johnstone and T. Wilkin Efficient implementation of Bailey and Borwein pseudo-random number generator based on normal numbers . . . . . . . . 1999--2004 Akira SaiToh ZKCM: a C++ library for multiprecision matrix computation with applications in quantum information . . . . . . . . . . 2005--2020 F. E. Mackay and S. T. T. Ollila and C. Denniston Hydrodynamic forces implemented into LAMMPS through a lattice-Boltzmann fluid 2021--2031 Jingjing Zheng and Rubén Meana-Pañeda and Donald G. Truhlar MSTor version 2013: a new version of the computer code for the multi-structural torsional anharmonicity, now with a coupled torsional potential . . . . . . 2032--2033
Anonymous Editorial Board . . . . . . . . . . . . ?? Xiangwen Lu and Jiabin Yuan and Weiwei Zhang Workflow of the Grover algorithm simulation incorporating CUDA and GPGPU 2035--2041 Matthias Bach and Volker Lindenstruth and Owe Philipsen and Christopher Pinke Lattice QCD based on OpenCL . . . . . . 2042--2052 M. Brambilla and R. Bilato An efficient interface between the solvers of Maxwell's equations and of the quasilinear kinetic equation for simulations of ion cyclotron heating in tokamak plasmas . . . . . . . . . . . . 2053--2060 Aditya Kaushik Iterative analytic approximation to nonlinear convection dominated systems 2061--2069 J.-H. Koehne and K. Frantzen and M. Schmitz and T. Fuchs and W. Rhode and D. Chirkin and J. Becker Tjus PROPOSAL: a tool for propagation of charged leptons . . . . . . . . . . . . 2070--2090 Qing Hou and Min Li and Yulu Zhou and Jiechao Cui and Zhenguo Cui and Jun Wang Molecular dynamics simulations with many-body potentials on multiple GPUs-The implementation, package and performance . . . . . . . . . . . . . . 2091--2101 Kris T. Delaney and Glenn H. Fredrickson Polymer field-theory simulations on graphics processing units . . . . . . . 2102--2110 Guang-Rui Qian and Xiao Dong and Xiang-Feng Zhou and Yongjun Tian and Artem R. Oganov and Hui-Tian Wang Variable cell nudged elastic band method for studying solid-solid structural phase transitions . . . . . . . . . . . 2111--2118 Pavel Augustinský and Jan Kunes Improved Green's function measurement for hybridization expansion quantum Monte Carlo . . . . . . . . . . . . . . 2119--2126 M. Rewie\'nski and A. Lamecki and M. Mrozowski An extended basis inexact shift-invert Lanczos for the efficient solution of large-scale generalized eigenproblems 2127--2135 Yinlong Zhao and Zhiliang Lin and Shijun Liao An iterative HAM approach for nonlinear boundary value problems in a semi-infinite domain . . . . . . . . . . 2136--2144 Mehdi Dehghan and Ahmad Nikpour The solitary wave solution of coupled Klein--Gordon--Zakharov equations via two different numerical methods . . . . 2145--2158 Yohei Miki and Daisuke Takahashi and Masao Mori Highly scalable implementation of an $N$-body code on a GPU cluster . . . . . 2159--2168 Harpreet Kaur and R. C. Mittal and Vinod Mishra Haar wavelet approximate solutions for the generalized Lane--Emden equations arising in astrophysics . . . . . . . . 2169--2177 Fatih Özkaynak and Sirma Yavuz Security problems for a pseudorandom sequence generator based on the Chen chaotic system . . . . . . . . . . . . . 2178--2181 Minghui Wang and Wenhao Ma A structure-preserving method for the quaternion LU decomposition in quaternionic quantum theory . . . . . . 2182--2186 C. Nazé and E. Gaidamauskas and G. Gaigalas and M. Godefroid and P. Jönsson ris 3: a program for relativistic isotope shift calculations . . . . . . . 2187--2196 P. Jönsson and G. Gaigalas and J. Biero\'n and C. Froese Fischer and I. P. Grant New version: Grasp 2 K relativistic atomic structure package . . . . . . . . 2197--2203 J. Mikram and F. Zinoun and A. El Abdllaoui POINCARÉ CODE: a package of open-source implements for normalization and computer algebra reduction near equilibria of coupled ordinary differential equations . . . . . . . . . 2204--2213 Nathan Whitehorn and Jakob van Santen and Sven Lafebre Penalized splines for smooth representation of high-dimensional Monte Carlo datasets . . . . . . . . . . . . . 2214--2220 Beibei Huang and Vladimir A. Baulin IPEC Solver: Numerical simulation tool to study inter-polyelectrolyte complexation . . . . . . . . . . . . . . 2221--2229 Sam J. Cipolla Corrected ISICS program versions available due to a minor calculation error involving M3 X-ray production cross sections . . . . . . . . . . . . . 2230--2231 Matej Batic and Maria Grazia Pia and Sam J. Cipolla Corrected ISICSoo class version . . . . 2232--2233
Anonymous Editorial Board . . . . . . . . . . . . ?? S. Bogneri and A. Bulgacx and J. Carlsonf and J. Engelt and G. Fannj and R. J. Furnstahlm and S. Gandolfif and G. Hagenl and M. Horoid and C. Johnsonq and M. Kortelainenu and E. Luska and P. Marise and H. Namk and P. Navratilh and W. Nazarewiczu and E. Ngg and G. P. A. Nobrec and E. Ormandh and T. Papenbrockl and J. Peiu and S. C. Pieperb and S. Quaglionih and K. J. Rocheo and J. Saricha and N. Schunckh and M. Sosonkinan and J. Terasakiv and I. Thompsonh and J. P. Varye and S. M. Wilda Computational nuclear quantum many-body problem: the UNEDF project . . . . . . . 2235--2250 Deuk-Chul Kwon and Mi-Young Song and Jung-Sik Yoon and Nam-Sik Yoon A feed-back control approach for global simulation of high density plasma discharges . . . . . . . . . . . . . . . 2251--2256 Pawel Dlotko and Ruben Specogna Physics inspired algorithms for (co)homology computations of three-dimensional combinatorial manifolds with boundary . . . . . . . . 2257--2266 L. Luo and T. Rafiq and A. H. Kritz Improved multi-mode anomalous transport module for tokamak plasmas . . . . . . . 2267--2276 D. Kumar and A. K. Patra and E. B. Pitman and H. Chi Parallel Godunov smoothed particle hydrodynamics (SPH) with improved treatment of Boundary Conditions and an application to granular flows . . . . . 2277--2286 Daniil A. Andrienko and Sergey T. Surzhikov and Joseph S. Shang Spherical harmonics method applied to the multi-dimensional radiation transfer 2287--2298 C. Montoliu and N. Ferrando and M. A. Gosálvez and J. Cerdá and R. J. Colom Implementation and evaluation of the Level Set method: Towards efficient and accurate simulation of wet etching for microengineering applications . . . . . 2299--2309 Mauro Lapelosa and Cameron F. Abrams Transition-path theory calculations on non-uniform meshes in two and three dimensions using finite elements . . . . 2310--2315 Reza Kamali and Ali Kharazmi Investigation of multiscale fluid flow characteristics based on a hybrid atomistic-continuum method . . . . . . . 2316--2320 A. Arbona and A. Artigues and C. Bona-Casas and J. Massó and B. Miñano and A. Rigo and M. Trias and C. Bona Simflowny: a general-purpose platform for the management of physical models and simulation problems . . . . . . . . 2321--2331 Vladimir V. Bytev and Mikhail Yu. Kalmykov and Bernd A. Kniehl HYPERDIRE, HYPERgeometric functions DIfferential REduction: Mathematica-based packages for differential reduction of generalized hypergeometric functions $ {}_p F_{p - 1}, F_1, F_2, F_3, F_4 $ . . . . . . . . 2332--2342 Sergey G. Bondarenko and Andrey A. Sapronov NLO EW and QCD proton-proton cross section calculations with \tt mcsanc-v1.01 . . . . . . . . . . . . . . 2343--2350 M. D. J. Hollis and M. Tessenyi and G. Tinetti tau: a $1$D radiative transfer code for transmission spectroscopy of extrasolar planet atmospheres . . . . . . . . . . . 2351--2361 Jun Gao CIJET: a program for computation of jet cross sections induced by quark contact interactions at hadron colliders . . . . 2362--2366 L. Yu. Barash and L. N. Shchur RNGSSELIB: Program library for random number generation. More generators, parallel streams of random numbers and Fortran compatibility . . . . . . . . . 2367--2369
Anonymous Editorial Board . . . . . . . . . . . . ?? Roberto da Silva and Henrique A. Fernandes and J. R. Drugowich de Felício and Wagner Figueiredo Novel considerations about the non-equilibrium regime of the tricritical point in a metamagnetic model: Localization and tricritical exponents . . . . . . . . . . . . . . . 2371--2377 Y.-J. Lin and M. R. Smith and F.-A. Kuo and H. M. Cave and J.-C. Huang and J.-S. Wu A true-direction reconstruction of the quiet direct simulation method for inviscid gas flows . . . . . . . . . . . 2378--2390 J. Kuipers and A. Plaat and J. A. M. Vermaseren and H. J. van den Herik Improving multivariate Horner schemes with Monte Carlo tree search . . . . . . 2391--2395 Wei Jiang and Hanquan Wang and Xianggui Li A numerical study of the ground state and dynamics of atomic-molecular Bose--Einstein condensates . . . . . . . 2396--2407 Wei Shi and Xinyuan Wu A note on symplectic and symmetric ARKN methods . . . . . . . . . . . . . . . . 2408--2411 S. Norris and A. Vikartofsky and R. E. Wagner and Q. Su and R. Grobe Absorbing-like boundaries for quantum field theoretical grid simulations . . . 2412--2418 F. Hariri and M. Ottaviani A flux-coordinate independent field-aligned approach to plasma turbulence simulations . . . . . . . . . 2419--2429 Lajos Szalmás Accelerated discrete velocity method for axial-symmetric flows of gaseous mixtures as defined by the McCormack kinetic model . . . . . . . . . . . . . 2430--2437 M. Wiebusch Numerical computation of $p$-values with myFitter . . . . . . . . . . . . . . . . 2438--2445 Nicolas Blöchliger and Andreas Vitalis and Amedeo Caflisch A scalable algorithm to order and annotate continuous observations reveals the metastable states visited by dynamical systems . . . . . . . . . . . 2446--2453 Sibo Wang and Junbo Xu and Hao Wen Accelerating dissipative particle dynamics with multiple GPUs . . . . . . 2454--2461 S. Maeyama and A. Ishizawa and T.-H. Watanabe and N. Nakajima and S. Tsuji-Iio and H. Tsutsui Numerical techniques for parallel dynamics in electromagnetic gyrokinetic Vlasov simulations . . . . . . . . . . . 2462--2473 Nkosinathi Dlamini and Alessandro Sergi Quantum dynamics in classical thermal baths . . . . . . . . . . . . . . . . . 2474--2477 Edoardo Di Napoli and Mario Berljafa Block iterative eigensolvers for sequences of correlated eigenvalue problems . . . . . . . . . . . . . . . . 2478--2488 Zhijun Wang and Junjie Li and Yaolin Guo and Sai Tang and Jincheng Wang Unique visualization of multiply oriented lattice structures using a continuous wavelet transform . . . . . . 2489--2493 Feng-shun Lu and Jun-qiang Song and Wang-qun Lin and Yu-fei Pang and Kai-jun Ren and Pei-chang Shi Efficient utilization of launched threads on GPUs: the spherical harmonic transform as a case study . . . . . . . 2494--2502 Xinlu Xu and Peicheng Yu and Samual F. Martins and Frank S. Tsung and Viktor K. Decyk and Jorge Vieira and Ricardo A. Fonseca and Wei Lu and Luis O. Silva and Warren B. Mori Numerical instability due to relativistic plasma drift in EM--PIC simulations . . . . . . . . . . . . . . 2503--2514 Arno Mayrhofer and Benedict D. Rogers and Damien Violeau and Martin Ferrand Investigation of wall bounded flows using SPH and the unified semi-analytical wall boundary conditions 2515--2527 R. Capuzzo-Dolcetta and M. Spera A performance comparison of different graphics processing units running direct $N$-body simulations . . . . . . . . . . 2528--2539 Pengfei Wei and Zhenzhou Lu and Jingwen Song A new variance-based global sensitivity analysis technique . . . . . . . . . . . 2540--2551 Sophia Borowka and Gudrun Heinrich Massive non-planar two-loop four-point integrals with SecDec 2.1 . . . . . . . 2552--2561 Hua-Sheng Shao HELAC-Onia: an automatic matrix element generator for heavy quarkonium physics 2562--2570 C. Bae and W. M. Stacey and T. D. Morley GTROTA: a code for the solution of the coupled nonlinear extended neoclassical rotation equations in tokamak plasmas using successive over-relaxation and simulated annealing . . . . . . . . . . 2571--2587 Ruben Otin ERMES: a nodal-based finite element code for electromagnetic simulations in frequency domain . . . . . . . . . . . . 2588--2595 Evgeny Z. Liverts and Nir Barnea Three-body systems with Coulomb interaction. Bound and quasi-bound $S$-states . . . . . . . . . . . . . . . 2596--2603 H. Dreiner and K. Nickel and W. Porod and F. Staub Full 1-loop calculation of $ B R(B^0_{s, d} \to \ell \bar {\ell }) $ in models beyond the MSSM with SARAH and SPheno 2604--2617 Benzhuo Lu and Xiaolin Cheng and Jingfang Huang and J. Andrew McCammon AFMPB: an adaptive fast multipole Poisson--Boltzmann solver for calculating electrostatics in biomolecular systems . . . . . . . . . . 2618--2619
Xavier Antoine and Weizhu Bao and Christophe Besse Computational methods for the dynamics of the nonlinear Schrödinger/Gross--Pitaevskii equations 2621--2633 T. P. Straatsma and Daniel G. Chavarría-Miranda On eliminating synchronous communication in molecular simulations to improve scalability . . . . . . . . . . . . . . 2634--2640 Szilárd Páll and Berk Hess A flexible algorithm for calculating pair interactions on SIMD architectures 2641--2650 D. Tordella and M. Iovieno and S. Massaglia and A. Mignone Large-eddy simulation of hypersonic flows. Selective procedure to activate the sub-grid model wherever small scale turbulence is present . . . . . . . . . 2651--2661 Jason Mick and Eyad Hailat and Vincent Russo and Kamel Rushaidat and Loren Schwiebert and Jeffrey Potoff GPU-accelerated Gibbs ensemble Monte Carlo simulations of Lennard-Jonesium 2662--2669 Gregor Michalicek and Markus Betzinger and Christoph Friedrich and Stefan Blügel Elimination of the linearization error and improved basis-set convergence within the FLAPW method . . . . . . . . 2670--2679 Pawel Scharoch and Maciej Winiarski An efficient method of DFT/LDA band-gap correction . . . . . . . . . . . . . . . 2680--2683 Hiroaki Ishizuka and Masafumi Udagawa and Yukitoshi Motome Polynomial expansion Monte Carlo study of frustrated itinerant electron systems: Application to a spin-ice type Kondo lattice model on a pyrochlore lattice . . . . . . . . . . . . . . . . 2684--2692 Xiang-Wei Jiang and Shu-Shen Li and Lin-Wang Wang A small box Fast Fourier Transformation method for fast Poisson solutions in large systems . . . . . . . . . . . . . 2693--2702 Ignacio Martin-Bragado and Antonio Rivera and Gonzalo Valles and Jose Luis Gomez-Selles and María J. Caturla MMonCa: an Object Kinetic Monte Carlo simulator for damage irradiation evolution and defect diffusion . . . . . 2703--2710 A. L. Zheleznyakova and S. T. Surzhikov Molecular dynamics-based unstructured grid generation method for aerodynamic applications . . . . . . . . . . . . . . 2711--2727 Jun Yan and Lin Li and Christopher O'Grady Graphics Processing Unit acceleration of the Random Phase Approximation in the projector augmented wave method . . . . 2728--2733 Eike H. Müller and Rupert Ford and Matthew C. Hort and Lois Huggett and Graham Riley and David J. Thomson Parallelisation of the Lagrangian atmospheric dispersion model NAME . . . 2734--2745 P. R. O. da Silva and F. W. S. Lima and R. N. Costa Filho Potts model with $ q = 3 $ and $4$ states on directed small-world network 2746--2750 R. G. M. van der Sman Investigation of Lattice Boltzmann wetting boundary conditions for capillaries with irregular polygonal cross-section . . . . . . . . . . . . . 2751--2760 Calvin W. Johnson and W. Erich Ormand and Plamen G. Krastev Factorization in large-scale many-body calculations . . . . . . . . . . . . . . 2761--2774 Hiroshi Watanabe and Masaru Suzuki and Nobuyasu Ito Huge-scale molecular dynamics simulation of multibubble nuclei . . . . . . . . . 2775--2784 W. Michael Brown and Masako Yamada Implementing molecular dynamics on hybrid high performance computers --- Three-body potentials . . . . . . . . . 2785--2793 Rudy Arthur and A. D. Kennedy Monte Carlo integration with subtraction 2794--2802 Andy Buckley and Jonathan Butterworth and David Grellscheid and Hendrik Hoeth and Leif Lönnblad and James Monk and Holger Schulz and Frank Siegert Rivet user manual . . . . . . . . . . . 2803--2819 A. V. Smirnov and V. A. Smirnov FIRE4, LiteRed and accompanying tools to solve integration by parts relations . . 2820--2827 Nikesh S. Dattani FeynDyn: a MATLAB program for fast numerical Feynman integral calculations for open quantum system dynamics on GPUs 2828--2833 T. Loke and J. B. Wang CUGatesDensity --- Quantum circuit analyser extended to density matrices 2834--2839 M. A. Bernal and D. Sikansi and F. Cavalcante and S. Incerti and C. Champion and V. Ivanchenko and Z. Francis An atomistic geometrical model of the B-DNA configuration for DNA-radiation interaction simulations . . . . . . . . 2840--2847 Zhi Yang and Xing-Gang Wu and Xian-You Wang BEEC: an event generator for simulating the $ B_c $ meson production at an $ e^+ e^- $ collider . . . . . . . . . . . . . 2848--2855 Christian Blau and Helmut Grubmuller g\_contacts: Fast contact search in bio-molecular ensemble data . . . . . . 2856--2859 E. Sarti and S. Zamuner and P. Cossio and A. Laio and F. Seno and A. Trovato BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures . . . . 2860--2865
V. Khoromskaia and B. N. Khoromskij Mòller--Plesset (MP2) energy correction using tensor factorization of the grid-based two-electron integrals . . . 2--10 Miguel Cárdenas-Montes and Miguel A. Vega-Rodríguez and Christopher Bonnett and Ignacio Sevilla-Noarbe and Rafael Ponce and Eusebio Sánchez Alvaro and Juan José Rodríguez-Vázquez GPU-based shear-shear correlation calculation . . . . . . . . . . . . . . 11--18 Xiaopeng Luo and Zhenzhou Lu and Xin Xu A fast computational method for moment-independent uncertainty importance measure . . . . . . . . . . . 19--27 Zheyong Fan and Andreas Uppstu and Topi Siro and Ari Harju Efficient linear-scaling quantum transport calculations on graphics processing units and applications on electron transport in graphene . . . . . 28--39 René Hammer and Walter Pötz Staggered grid leap-frog scheme for the $ (2 + 1)D $ Dirac equation . . . . . . 40--52 Xin Bian and Marco Ellero A splitting integration scheme for the SPH simulation of concentrated particle suspensions . . . . . . . . . . . . . . 53--62 Zhenlin Guo and Ping Lin and Yangfan Wang Continuous finite element schemes for a phase field model in two-layer fluid Bénard--Marangoni convection computations 63--78 Akira Kageyama and Tomoki Yamada An approach to exascale visualization: Interactive viewing of in-situ visualization . . . . . . . . . . . . . 79--85 A. Perona and D. Borgogno and L.-G. Eriksson A test electron model for the study of three dimensional magnetic reconnection effects . . . . . . . . . . . . . . . . 86--95 Wenjun Deng and Guo-Yong Fu Optimization by marker removal for $ \delta f $ particle simulations . . . . 96--105 Rooholah Abedian and Hojatollah Adibi and Mehdi Dehghan A high-order symmetrical weighted hybrid ENO-flux limiter scheme for hyperbolic conservation laws . . . . . . . . . . . 106--127 J. Squire and J. Burby and H. Qin VEST: Abstract vector calculus simplification in Mathematica . . . . . 128--135 Edgar A. Gómez and Saravana Prakash Thirumuruganandham and Alejandro Santana Split-operator technique for propagating phase space functions: Exploring chaotic, dissipative and relativistic dynamics . . . . . . . . . . . . . . . . 136--143 Un-Hong Wong and Hon-Cheng Wong and Yonghui Ma Global magnetohydrodynamic simulations on multiple GPUs . . . . . . . . . . . . 144--152 Truong Vinh Truong Duy and Taisuke Ozaki A decomposition method with minimum communication amount for parallelization of multi-dimensional FFTs . . . . . . . 153--164 N. B. Marushchenko and Y. Turkin and H. Maassberg Ray-tracing code TRAVIS for ECR heating, EC current drive and ECE diagnostic . . 165--176 M. Dima Flash vertexing algorithms for trigger applications . . . . . . . . . . . . . . 177--180 Steven F. Henke and Sachin Shanbhag Mesh sensitivity in peridynamic simulations . . . . . . . . . . . . . . 181--193 Ulrich Hohenester OCTBEC --- A Matlab toolbox for optimal quantum control of Bose--Einstein condensates . . . . . . . . . . . . . . 194--216 S. Eder and A. Vernes and G. Betz Methods and numerical aspects of nanoscopic contact area estimation in atomistic tribological simulations . . . 217--228 N. Phan-Thien and N. Mai-Duy and D. Pan and B. C. Khoo Exponential-time differencing schemes for low-mass DPD systems . . . . . . . . 229--235 V. P. Druzhinin and L. V. Kardapoltsev and V. A. Tayursky GGRESRC: a Monte Carlo generator for the two-photon process $ e^+ e^- \to e^+ e^- R(J^{PC} = 0^{-+}) $ in the single-tag mode . . . . . . . . . . . . . . . . . . 236--243 Daniel X. Ogburn and Colin L. Waters and Murray D. Sciffer and Jeff A. Hogan and Paul C. Abbott A finite difference construction of the spheroidal wave functions . . . . . . . 244--253 K. D. Launey and S. Sarbadhicary and T. Dytrych and J. P. Draayer Program in C for studying characteristic properties of two-body interactions in the framework of spectral distribution theory . . . . . . . . . . . . . . . . . 254--267 Richard W. Bowman and Graham M. Gibson and Anna Linnenberger and David B. Phillips and James A. Grieve and David M. Carberry and Steven Serati and Mervyn J. Miles and Miles J. Padgett ``Red Tweezers'': Fast, customisable hologram generation for optical tweezers 268--273 Eduardo X. Miqueles and Tiago A. Coimbra and Bruno D. Amaro and J. J. S. de Figueiredo Analytical ray tracing system: Introducing \tt art, a C-library designed for seismic applications . . . 274--293 Aaron M. Tagliaboschi and Jeremy B. Maddox POTLIB2Math: a Mathematica interface to the potential energy surface library for chemical systems . . . . . . . . . . . . 294--301 Soubhadra Sen and N. Mohankumar Migpore, a code package for the estimation of migration of radioactive species in a porous medium . . . . . . . 302--306 J. Avellar and L. G. S. Duarte and L. A. C. P. da Mota A Maple package to find first order differential invariants of 2ODEs via a Darboux approach . . . . . . . . . . . . 307--316 Toni Giorgino Computing $1$-D atomic densities in macromolecular simulations: the density profile tool for VMD . . . . . . . . . . 317--322 Karol Kolodziej \tt carlomat, version 2 of the program for automatic computation of lowest order cross sections . . . . . . . . . . 323--329 J. Buckeridge and D. O. Scanlon and A. Walsh and C. R. A. Catlow Automated procedure to determine the thermodynamic stability of a material and the range of chemical potentials necessary for its formation relative to competing phases and compounds . . . . . 330--338 Yuan-Pin Chang and Frank Filsinger and Boris G. Sartakov and Jochen Küpper CMIstark: Python package for the Stark-effect calculation and symmetry classification of linear, symmetric and asymmetric top wavefunctions in dc electric fields . . . . . . . . . . . . 339--349 A. A. Azooz and Y. A. Al- Jawaady and Z. T. Ali Langmuir probe RF plasma compensation using a simulation method . . . . . . . 350--356 Qian Miao and Yunhu Wang and Yong Chen and Yunqing Yang PDEBellII: a Maple package for finding bilinear forms, bilinear Bäcklund transformations, Lax pairs and conservation laws of the KdV-type equations . . . . . . . . . . . . . . . 357--367 A. A. Babaev Parallel code NSBC: Simulations of relativistic nuclei scattering by a bent crystal . . . . . . . . . . . . . . . . 368--379 E. V. Corrêa Silva and G. A. Monerat and G. de Oliveira Neto and L. G. Ferreira Filho Spectral: Solving Schroedinger and Wheeler--DeWitt equations in the positive semi-axis by the spectral method . . . . . . . . . . . . . . . . . 380--391 Claudio A. Gelmi and Héctor Jorquera IDSOLVER: a general purpose solver for $n$ th-order integro-differential equations . . . . . . . . . . . . . . . 392--397 M. F. Ciappina and J. A. Pérez-Hernández and M. Lewenstein ClassSTRONG: Classical simulations of strong field processes . . . . . . . . . 398--406 C. M. Dion and A. Hashemloo and G. Rahali Program for quantum wave-packet dynamics with time-dependent potentials . . . . . 407--414 Petros Souvatzis Uquantchem: a versatile and easy to use quantum chemistry computational software 415--421 Giovanni Pizzi and Dmitri Volja and Boris Kozinsky and Marco Fornari and Nicola Marzari BoltzWann: a code for the evaluation of thermoelectric and electronic transport properties with a maximally-localized Wannier functions basis . . . . . . . . 422--429 G. F. Jefferson and J. Carminati FracSym: Automated symbolic computation of Lie symmetries of fractional differential equations . . . . . . . . . 430--441 Erhan Okuyan and Ugur Güdükbay BilKristal 2.0: a tool for pattern information extraction from crystal structures . . . . . . . . . . . . . . . 442--443
Uday K. Khankhoje and Thomas A. Cwik A mesh reconfiguration scheme for speeding up Monte Carlo simulations of electromagnetic scattering by random rough surfaces . . . . . . . . . . . . . 445--447 Nicolas Crouseilles and Giovanni Manfredi Asymptotic preserving schemes for the Wigner--Poisson--BGK equations in the diffusion limit . . . . . . . . . . . . 448--458 Yunbao Huang and Shaoen Jiang and Haiyan Li and Qifu Wang and Liping Chen Compressive analysis applied to radiation symmetry evaluation and optimization for laser-driven inertial confinement fusion . . . . . . . . . . . 459--471 David Greynat and Javier Sesma A new approach to the epsilon expansion of generalized hypergeometric functions 472--478 Ghislain Tchuen and Ferdinand Fogang and Yves Burtschell and Paul Woafo A hybrid numerical method and its application to inviscid compressible flow problems . . . . . . . . . . . . . 479--488 Tian Qiu and Teng-Yue Han and Li-Xin Zhong and Zi-Ke Zhang and Guang Chen Redundant correlation effect on personalized recommendation . . . . . . 489--494 E. Westphal and S. P. Singh and C.-C. Huang and G. Gompper and R. G. Winkler Multiparticle collision dynamics: GPU accelerated particle-based mesoscale hydrodynamic simulations . . . . . . . . 495--503 Andrzej Ziólkowski A numerical approach to nonlinear propagation of light in photorefractive media . . . . . . . . . . . . . . . . . 504--511 G. A. Panopoulos and T. E. Simos A new phase-fitted eight-step symmetric embedded predictor-corrector method (EPCM) for orbital problems and related IVPs with oscillating solutions . . . . 512--523 Niels Grònbech-Jensen and Natha Robert Hayre and Oded Farago Application of the G-JF discrete-time thermostat for fast and accurate molecular simulations . . . . . . . . . 524--527 Maik Höschele and Jens Hoff and Alexey Pak and Matthias Steinhauser and Takahiro Ueda MT: a Mathematica package to compute convolutions . . . . . . . . . . . . . . 528--539 M. Tuttafesta and A. D'Angola and A. Laricchiuta and P. Minelli and M. Capitelli and G. Colonna GPU and multi-core based Reaction Ensemble Monte Carlo method for non-ideal thermodynamic systems . . . . 540--549 M. Baity-Jesi and R. A. Baños and A. Cruz and L. A. Fernandez and J. M. Gil-Narvion and A. Gordillo-Guerrero and D. Iñiguez and A. Maiorano and F. Mantovani and E. Marinari and V. Martin-Mayor and J. Monforte-Garcia and A. Muñoz Sudupe and D. Navarro and G. Parisi and S. Perez-Gaviro and M. Pivanti and F. Ricci-Tersenghi and J. J. Ruiz-Lorenzo and S. F. Schifano and B. Seoane and A. Tarancond and R. Tripiccione and D. Yllanes Janus II: A new generation application-driven computer for spin-system simulations . . . . . . . . 550--559 S. Alioli and S. Badger and J. Bellm and B. Biedermann and F. Boudjema and G. Cullen and A. Denner and H. van Deurzen and S. Dittmaier and R. Frederix and S. Frixione and M. V. Garzelli and S. Gieseke and E. W. N. Glover and N. Greiner and G. Heinrich and V. Hirschi and S. Höche and J. Huston and H. Ita and N. Kauer and F. Krauss and G. Luisoni and D. Ma\^\itre and F. Maltoni and P. Nason and C. Oleari and R. Pittau and S. Plätzer and S. Pozzorini and L. Reina and C. Reuschle and T. Robens and J. Schlenk and M. Schönherr and F. Siegert and J. F. von Soden-Fraunhofen and F. Tackmann and F. Tramontano and P. Uwer and G. Salam and P. Skands and S. Weinzierl and J. Winter and V. Yundin and G. Zanderighi and M. Zaro Update of the Binoth Les Houches Accord for a standard interface between Monte Carlo tools and one-loop programs . . . 560--571 Yueh-Cheng Kuo and Tsung-Lin Lee Tracking local optimality for cost parameterized optimization problems . . 572--577 J. M. TenBarge and G. G. Howes and W. Dorland and G. W. Hammett An oscillating Langevin antenna for driving plasma turbulence simulations 578--589 L. J. Höök and T. Johnson Composition schemes for the stochastic differential equation describing collisional pitch-angle diffusion . . . 590--594 Antonio Souto-Iglesias and Fabricio Maci\`a and Leo M. González and Jose L. Cercos-Pita Addendum to ``On the consistency of MPS'' [Comput. Phys. Comm. \bf 184 (3) (2013) 732--745] . . . . . . . . . . . . 595--598 I. M. Sitnik Development of the FUMILI minimization package . . . . . . . . . . . . . . . . 599--603 Gareth A. Tribello and Massimiliano Bonomi and Davide Branduardi and Carlo Camilloni and Giovanni Bussi PLUMED 2: New feathers for an old bird 604--613 C. Schimeczek and G. Wunner Accurate $2$ d finite element calculations for hydrogen in magnetic fields of arbitrary strength . . . . . . 614--621 Brandon Murakami SuperLFV: an SLHA tool for lepton flavor violating observables in supersymmetric models . . . . . . . . . . . . . . . . . 622--637 A. Bueno and A. Gascón CORSIKA implementation of heavy quark production and propagation in extensive air showers . . . . . . . . . . . . . . 638--650 D. Schick and A. Bojahr and M. Herzog and R. Shayduk and C. von Korff Schmising and M. Bargheer \sc udkm1Dsim --- a simulation toolkit for $1$D ultrafast dynamics in condensed matter . . . . . . . . . . . . . . . . . 651--660 S. Rama and C. Surendra Dilip and Rajesh Narayana Perumal A software program to investigate the nucleation kinetics of solution grown crystals using MATLAB platform . . . . . 661--669 Hua-sheng Xie PDRF: a general dispersion relation solver for magnetized multi-fluid plasma 670--675 Sandro Giuseppe Chiodo and Monica Leopoldini MolSOC: a spin-orbit coupling code . . . 676--683 David A. Bonhommeau and Marie-Pierre Gaigeot MDMC$^2$: a molecular dynamics code for investigating the fragmentation dynamics of multiply charged clusters . . . . . . 684--694 M. D. J. Hollis and M. Tessenyi and G. Tinetti \tt tau: a $1$D radiative transfer code for transmission spectroscopy of extrasolar planet atmospheres . . . . . 695--695
Ianik Plante and Luc Devroye and Francis A. Cucinotta Calculations of distance distributions and probabilities of binding by ligands between parallel plane membranes comprising receptors . . . . . . . . . . 697--707 Viktor K. Decyk and Tajendra V. Singh Particle-in-Cell algorithms for emerging computer architectures . . . . . . . . . 708--719 Christopher D. Cooper and Jaydeep P. Bardhan and L. A. Barba A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers . . . . . . . . . . . . 720--729 Daniele Barettin and Paolo Sibani Optimization by record dynamics . . . . 730--735 D. L. Green and L. A. Berry Iterative addition of parallel temperature effects to finite-difference simulation of radio-frequency wave propagation in plasmas . . . . . . . . . 736--743 X. Pang and L. Rybarcyk GPU accelerated online multi-particle beam dynamics simulator for ion linear particle accelerators . . . . . . . . . 744--753 Bo Li and Keisuke Fujii and Yuanning Gao Kalman-filter-based track fitting in non-uniform magnetic field with segment-wise helical track model . . . . 754--761 David W. Schwenke On the computation of high order Rys quadrature weights and nodes . . . . . . 762--763 H. Grimm-Strele and F. Kupka and H. J. Muthsam Curvilinear grids for WENO methods in astrophysical simulations . . . . . . . 764--776 Truong Vinh Truong Duy and Taisuke Ozaki A three-dimensional domain decomposition method for large-scale DFT electronic structure calculations . . . . . . . . . 777--789 Hai-Wei Sun and Leonard Z. Li A CCD--ADI method for unsteady convection-diffusion equations . . . . . 790--797 Yufeng Nie and Weiwei Zhang and Nan Qi and Yiqiang Li Parallel node placement method by bubble simulation . . . . . . . . . . . . . . . 798--808 Manoj Kumar and Sapna Pandit A composite numerical scheme for the numerical simulation of coupled Burgers' equation . . . . . . . . . . . . . . . . 809--817 Ravishankar Sundararaman and T. A. Arias Efficient classical density-functional theories of rigid-molecular fluids and a simplified free energy functional for liquid water . . . . . . . . . . . . . . 818--825 Sabrina Stella and Roberto Chignola and Edoardo Milotti Efficient and extendible class scheme for the combined reaction-diffusion of multiple molecular species . . . . . . . 826--835 Hailing Xiong and Hang Li and Weiping Chen and Laosheng Wu Data structure for on-lattice cluster-cluster aggregation model performance optimization . . . . . . . . 836--840 Kasper R. Kuijpers and Lilian de Martín and J. Ruud van Ommen Optimizing off-lattice Diffusion-Limited Aggregation . . . . . . . . . . . . . . 841--846 Matt Landreman and Adam Stahl and Tünde Fülöp Numerical calculation of the runaway electron distribution function and associated synchrotron emission . . . . 847--855 Miao Gao and Gui-Ping Zhang and Zhong-Yi Lu Electronic transport of a large scale system studied by renormalized transfer matrix method: Application to armchair graphene nanoribbons between quantum wires . . . . . . . . . . . . . . . . . 856--861 Hui Wang and Bo Wu and Zhixiang Huang and Xianliang Wu A symplectic FDTD algorithm for the simulations of lossy dispersive materials . . . . . . . . . . . . . . . 862--872 Fabiano Corsetti The orbital minimization method for electronic structure calculations with finite-range atomic basis sets . . . . . 873--883 Lukasz Walewski and Harald Forbert and Dominik Marx Reactive path integral quantum simulations of molecules solvated in superfluid helium . . . . . . . . . . . 884--899 I. Cimrák and M. Gusenbauer and I. Jancigová An ESPResSo implementation of elastic objects immersed in a fluid . . . . . . 900--907 Wei Jiang and James C. Phillips and Lei Huang and Mikolai Fajer and Yilin Meng and James C. Gumbart and Yun Luo and Klaus Schulten and Beno\^\it Roux Generalized scalable multiple copy algorithms for molecular dynamics simulations in NAMD . . . . . . . . . . 908--916 Reza Mohammadi An exponential spline solution of nonlinear Schrödinger equations with constant and variable coefficients . . . 917--932 V. B. Zlokazov Confidence interval optimization for testing hypotheses under data with low statistics . . . . . . . . . . . . . . . 933--938 Bohumir Jelinek and Mohsen Eshraghi and Sergio Felicelli and John F. Peters Large-scale parallel lattice Boltzmann-cellular automaton model of two-dimensional dendritic growth . . . . 939--947 K. Jansen and H. Leovey and A. Ammon and A. Griewank and M. Müller-Preussker Quasi-Monte Carlo methods for lattice systems: a first look . . . . . . . . . 948--959 G. Bélanger and F. Boudjema and A. Pukhov and A. Semenov micrOMEGAs\_3: a program for calculating dark matter observables . . . . . . . . 960--985 Nabil L. Youssef and S. G. Elgendi New Finsler package . . . . . . . . . . 986--997 J. Smiljani\'c and M. Zezelj and V. Milanovi\'c and J. Radovanovi\'c and I. Stankovi\'c MATLAB-based program for optimization of quantum cascade laser active region parameters and calculation of output characteristics in magnetic field . . . 998--1006 A. Otero-de-la-Roza and Erin R. Johnson and Víctor Luaña Critic 2: a program for real-space analysis of quantum chemical interactions in solids . . . . . . . . . 1007--1018 Michele Ceriotti and Joshua More and David E. Manolopoulos i-PI: a Python interface for ab initio path integral molecular dynamics simulations . . . . . . . . . . . . . . 1019--1026 Stephen Oxburgh and Tomás Tyc and Johannes Courtial Dr TIM: Ray-tracer TIM, with additional specialist scientific capabilities . . . 1027--1037 Yukihiro Komura and Yutaka Okabe CUDA programs for the GPU computing of the Swendsen--Wang multi-cluster spin flip algorithm: $2$D and $3$D Ising, Potts, and $ X Y $ models . . . . . . . 1038--1043 Bruno Golosio and Tom Schoonjans and Antonio Brunetti and Piernicola Oliva and Giovanni Luca Masala Monte Carlo simulation of X-ray imaging and spectroscopy experiments using quadric geometry and variance reduction techniques . . . . . . . . . . . . . . . 1044--1052 S. Vanaverbeke and R. Keppens and S. Poedts GRADSPMHD: a parallel MHD code based on the SPH formalism . . . . . . . . . . . 1053--1073 Upakarasamy Lourderaj and Rui Sun and Swapnil C. Kohale and George L. Barnes and Wibe A. de Jong and Theresa L. Windus and William L. Hase The VENUS/NWChem software package. Tight coupling between chemical dynamics simulations and electronic structure theory . . . . . . . . . . . . . . . . . 1074--1080 J. Kaspar Elegent --- An elastic event generator 1081--1084 David Kauzlari\'c and Marek Dynowski and Lars Pastewka and Andreas Greiner and Jan G. Korvink SYMPLER: SYMbolic ParticLE simulatoR with grid-computing interface . . . . . 1085--1099 Thomas Müller MPPhys --- a many-particle simulation package for computational physics education . . . . . . . . . . . . . . . 1100--1108 Toni Giorgino PLUMED-GUI: an environment for the interactive development of molecular dynamics analysis and biasing scripts 1109--1114 H. Carli and L. G. S. Duarte and L. A. C. P. da Mota A Maple package for improved global mapping forecast . . . . . . . . . . . . 1115--1129 F. Lyonnet and I. Schienbein and F. Staub and A. Wingerter PyR@TE: Renormalization group equations for general gauge theories . . . . . . . 1130--1152 Peter Marquard and Nikolai Zerf SLAM, a Mathematica interface for SUSY spectrum generators . . . . . . . . . . 1153--1171 Nicholas V. Sarlis and Stavros-Richard G. Christopoulos Visualization of the significance of Receiver Operating Characteristics based on confidence ellipses . . . . . . . . . 1172--1176 Ulrich Hohenester Simulating electron energy loss spectroscopy with the MNPBEM toolbox . . 1177--1187 David A. Bonhommeau and Marius Lewerenz and Marie-Pierre Gaigeot MCMC$^2$ (version 1.1): a Monte Carlo code for multiply-charged clusters . . . 1188--1191 Santos B. Yuste and Joaquín Quintana-Murillo Corrigendum to ``A finite difference method with non-uniform timesteps for fractional diffusion equations'' [Comput. Phys. Comm. \bf 183 (12) (2012) 2594--2600] . . . . . . . . . . . . . . 1192--1192 Zhaopeng Zhong and Alberto Talamo and Yousry Gohar Corrigendum to ``Monte Carlo and deterministic computational methods for the calculation of the effective delayed neutron fraction'' [Comput. Phys. Commun. \bf 184 (2013) 1660--1665] . . . 1193--1193
A. Siegel and K. Smith and K. Felker and P. Romano and B. Forget and P. Beckman Improved cache performance in Monte Carlo transport calculations using energy banding . . . . . . . . . . . . . 1195--1199 P. Amodio and T. Levitina and G. Settanni and E. B. Weinmüller Numerical simulation of the whispering gallery modes in prolate spheroids . . . 1200--1206 S. V. Dolgov and B. N. Khoromskij and I. V. Oseledets and D. V. Savostyanov Computation of extreme eigenvalues in higher dimensions using block tensor train format . . . . . . . . . . . . . . 1207--1216 Guo-Kang Er Probabilistic solutions of some multi-degree-of-freedom nonlinear stochastic dynamical systems excited by filtered Gaussian white noise . . . . . 1217--1222 C. Batistakis and A. V. Lyulin Simulated glass transition in thin polymer films: Influence of truncating the non-bonded interaction potentials 1223--1229 Higinio Ramos and J. Vigo-Aguiar A trigonometrically-fitted method with two frequencies, one for the solution and another one for the derivative . . . 1230--1236 Andrew J. Wickersham and Xuesong Li and Lin Ma Comparison of Fourier, principal component and wavelet analyses for high speed flame measurements . . . . . . . . 1237--1245 François Jollet and Marc Torrent and Natalie Holzwarth Generation of Projector Augmented-Wave atomic data: a $ 71 $ element validated table in the XML format . . . . . . . . 1246--1254 Xu Qian and Songhe Song and Yaming Chen A semi-explicit multi-symplectic splitting scheme for a $3$-coupled nonlinear Schrödinger equation . . . . . 1255--1264 Pedro Valero-Lara and Alfredo Pinelli and Manuel Prieto-Matias Fast finite difference Poisson solvers on heterogeneous architectures . . . . . 1265--1272 Ilya Valuev and Alexei Deinega and Sergey Belousov Implementation of the iterative finite-difference time-domain technique for simulation of periodic structures at oblique incidence . . . . . . . . . . . 1273--1281 Randhir Singh and Jitendra Kumar An efficient numerical technique for the solution of nonlinear singular boundary value problems . . . . . . . . . . . . . 1282--1289 A. Bouazra and S. Mnasri and S. Abdi-Ben Nasrallah and M. Said Numerical modeling of the InAs quantum dot with application of coordinate transformation and the finite difference method . . . . . . . . . . . . . . . . . 1290--1298 José Wilson M. Pinto and Luiz N. Oliveira Recursive computation of matrix elements in the numerical renormalization group 1299--1309 E. Hirvijoki and O. Asunta and T. Koskela and T. Kurki-Suonio and J. Miettunen and S. Sipilä and A. Snicker and S. Äkäslompolo ASCOT: Solving the kinetic equation of minority particle species in tokamak plasmas . . . . . . . . . . . . . . . . 1310--1321 Mihailo Backovi\'c and José Juknevich TemplateTagger v1.0.0: a template matching tool for jet substructure . . . 1322--1338 I. V. Grossu and C. Besliu and D. Felea and Al. Jipa High precision framework for chaos many-body engine . . . . . . . . . . . . 1339--1342 L. Yu. Barash and L. N. Shchur PRAND: GPU accelerated parallel random number generation library: Using most reliable algorithms and applying parallelism of modern GPUs and CPUs . . 1343--1353
Americo Cunha, Jr. and Rafael Nasser and Rubens Sampaio and Hélio Lopes and Karin Breitman Uncertainty quantification through the Monte Carlo method in a cloud computing setting . . . . . . . . . . . . . . . . 1355--1363 Tarcísio M. Rocha Filho Molecular dynamics for long-range interacting systems on graphic processing units . . . . . . . . . . . . 1364--1369 C. Alexandrou and M. Constantinou and V. Drach and K. Hadjiyiannakou and K. Jansen and G. Koutsou and A. Strelchenko and A. Vaquero Evaluation of disconnected quark loops for hadron structure using GPUs . . . . 1370--1382 I-Lin Ho and Chung-Hsien Chou and Yia-Chung Chang Theoretical study of electronic transport through quasicrystalline nanotubes using mesh inflation approach 1383--1388 Kyle Jay Michel and C. Wolverton Symmetry building Monte Carlo-based crystal structure prediction . . . . . . 1389--1393 M. Bilal and Banaras Khan and H. A. Rahnamaye Aliabad and M. Maqbool and S. Jalai Asadabadi and I. Ahmad Thermoelectric properties of SbNCa$_3$ and BiNCa$_3$ for thermoelectric devices and alternative energy applications . . 1394--1398 Wenting Shao and Xionghua Wu The numerical solution of the nonlinear Klein--Gordon and Sine-Gordon equations using the Chebyshev tau meshless method 1399--1409 D. A. Pigg and A. S. Umar and V. E. Oberacker Eulerian rotations of deformed nuclei for TDDFT calculations . . . . . . . . . 1410--1414 E. C. Howell and C. R. Sovinec Solving the Grad--Shafranov equation with spectral elements . . . . . . . . . 1415--1421 Ken-Ming Lin and Yu-Hui Huang and W. S. Su and T. C. Leung Strain effects on the band gap and work function of zigzag single-walled carbon nanotubes and graphene: a comparative study . . . . . . . . . . . . . . . . . 1422--1428 D. Tapiador and W. O'Mullane and A. G. A. Brown and X. Luri and E. Huedo and P. Osuna A framework for building hypercubes using MapReduce . . . . . . . . . . . . 1429--1438 Rui Jiang and Mao-Bin Hu and Bin Jia and Zi-You Gao A new mechanism for metastability of under-saturated traffic responsible for time-delayed traffic breakdown at the signal . . . . . . . . . . . . . . . . . 1439--1442 Z. Bern and L. J. Dixon and F. Febres Cordero and S. Höche and H. Ita and D. A. Kosower and D. Ma\^\itre Ntuples for NLO events at hadron colliders . . . . . . . . . . . . . . . 1443--1460 Asif Mushtaq and Kåre Olaussen Automatic code generator for higher order integrators . . . . . . . . . . . 1461--1472 Philipp Kant Finding linear dependencies in integration-by-parts equations: a Monte Carlo approach . . . . . . . . . . . . . 1473--1476 Andrew J. Morris and Rebecca J. Nicholls and Chris J. Pickard and Jonathan R. Yates OptaDOS: a tool for obtaining density of states, core-level and optical spectra from electronic structure codes . . . . 1477--1485 Daisuke Nishiura and Miki Y. Matsuo and Hide Sakaguchi ppohDEM: Computational performance for open source code of the discrete element method . . . . . . . . . . . . . . . . . 1486--1495 J. Avellar and M. S. Cardoso and L. G. S. Duarte and L. A. C. P. da Mota Determining Liouvillian first integrals for dynamical systems in the plane and an integrability analysis . . . . . . . 1496--1497 C. Schimeczek and D. Engel and G. Wunner A highly optimized code for calculating atomic data at neutron star magnetic field strengths using a doubly self-consistent Hartree--Fock--Roothaan method . . . . . . . . . . . . . . . . . 1498--1499
Sebastian Wouters and Ward Poelmans and Paul W. Ayers and Dimitri Van Neck CheMPS2: a free open-source spin-adapted implementation of the density matrix renormalization group for ab initio quantum chemistry . . . . . . . . . . . 1501--1514 Ameneh Taleei and Mehdi Dehghan Time-splitting pseudo-spectral domain decomposition method for the soliton solutions of the one- and multi-dimensional nonlinear Schrödinger equations . . . . . . . . . . . . . . . 1515--1528 T. Fritzsche and T. Hahn and S. Heinemeyer and F. von der Pahlen and H. Rzehak and C. Schappacher The implementation of the renormalized complex MSSM in FeynArts and FormCalc 1529--1545 Pierre de Buyl and Peter H. Colberg and Felix Höfling H5MD: a structured, efficient, and portable file format for molecular data 1546--1553 Nathan J. Quinlan and Libor Lobovský and Ruairi M. Nestor Development of the meshless finite volume particle method with exact and efficient calculation of interparticle area . . . . . . . . . . . . . . . . . . 1554--1563 Tzu-Liang Chan and Alex J. Lee and James R. Chelikowsky An effective capacitance model for computing the electronic properties of charged defects in crystals . . . . . . 1564--1569 Csaba Nemes and Gergely Barcza and Zoltán Nagy and Örs Legeza and Péter Szolgay The density matrix renormalization group algorithm on kilo-processor architectures: Implementation and trade-offs . . . . . . . . . . . . . . . 1570--1581 Naofumi Kitsunezaki and Atsushi Okabe Higher-order correction to the FDTD method based on the integral form of Maxwell's equations . . . . . . . . . . 1582--1588 V. Ledoux and M. Van Daele The accurate numerical solution of the Schrödinger equation with an explicitly time-dependent Hamiltonian . . . . . . . 1589--1594 Ales Vítek and René Kalus Two-dimensional multiple-histogram method applied to isothermal-isobaric Monte Carlo simulations of molecular clusters . . . . . . . . . . . . . . . . 1595--1605 Hongwei Li and Xiaonan Wu and Jiwei Zhang Local artificial boundary conditions for Schrödinger and heat equations by using high-order azimuth derivatives on circular artificial boundary . . . . . . 1606--1615 Ozlem Ozgun and Mustafa Kuzuoglu A coordinate transformation approach for efficient repeated solution of Helmholtz equation pertaining to obstacle scattering by shape deformations . . . . 1616--1627 James Tickner Arbitrary perturbations in Monte Carlo neutral-particle transport . . . . . . . 1628--1638 Guido Falk von Rudorff and Christoph Wehmeyer and Daniel Sebastiani Efficient implementation and application of the artificial bee colony algorithm to low-dimensional optimization problems 1639--1646 Valerio Bertone and Stefano Carrazza and Juan Rojo APFEL: a PDF evolution library with QED corrections . . . . . . . . . . . . . . 1647--1668 S. R. Haskey and B. D. Blackwell and D. G. Pretty Clustering of periodic multichannel timeseries data with application to plasma fluctuations . . . . . . . . . . 1669--1680 Alejandro M. Aragón A C++11 implementation of arbitrary-rank tensors for high-performance computing 1681--1696 S. Fritzsche The Feynman tools for quantum information processing: Design and implementation . . . . . . . . . . . . . 1697--1718 Teake Nutma xTras: a field-theory inspired xAct package for Mathematica . . . . . . . . 1719--1738 Qingang Xiong and Soroush Aramideh and Alberto Passalacqua and Song-Charng Kong BIOTC: an open-source CFD code for simulating biomass fast pyrolysis . . . 1739--1746 Wu Li and Jesús Carrete and Nebil A. Katcho and Natalio Mingo ShengBTE: a solver of the Boltzmann transport equation for phonons . . . . . 1747--1758 Maciej Rybczy\'nski and Grzegorz Stefanek and Wojciech Broniowski and Piotr Bozek GLISSANDO 2: GLauber Initial-State Simulation AND mOre\ldots, ver. 2 . . . 1759--1772 Florian Staub SARAH 4: a tool for (not only SUSY) model builders . . . . . . . . . . . . . 1773--1790 Cathal Ó Broin and L. A. A. Nikolopoulos A GPGPU based program to solve the TDSE in intense laser fields through the finite difference approach . . . . . . . 1791--1807 T. Niksi\'c and N. Paar and D. Vretenar and P. Ring DIRHB --- a relativistic self-consistent mean-field framework for atomic nuclei 1808--1821 Pierre de Buyl The vmf90 program for the numerical resolution of the Vlasov equation for mean-field systems . . . . . . . . . . . 1822--1827 J. Ph. Guillet and G. Heinrich and J. F. von Soden-Fraunhofen Tools for NLO automation: Extension of the \tt golem95C integral library . . . 1828--1834 Tobias Toll and Thomas Ullrich The dipole model Monte Carlo generator Sar $t$ re 1 . . . . . . . . . . . . . . 1835--1853 G. Opletal and T. C. Petersen and S. P. Russo HRMC\_2.1: Hybrid Reverse Monte Carlo method with silicon, carbon, germanium and silicon carbide potentials . . . . . 1854--1855
Bertrand Rouet-Leduc and Kipton Barros and Emmanuel Cieren and Venmugil Elango and Christoph Junghans and Turab Lookman and Jamaludin Mohd-Yusof and Robert S. Pavel and Axel Y. Rivera and Dominic Roehm and Allen L. McPherson and Timothy C. Germann Spatial adaptive sampling in multiscale simulation . . . . . . . . . . . . . . . 1857--1864 J. E. McClure and J. F. Prins and C. T. Miller A novel heterogeneous algorithm to simulate multiphase flow in porous media on multicore CPU--GPU systems . . . . . 1865--1874 Kai Kratzer and Joshua T. Berryman and Aaron Taudt and Johannes Zeman and Axel Arnold The Flexible Rare Event Sampling Harness System (FRESHS) . . . . . . . . . . . . 1875--1885 Wei Choon Tay and Eng Leong Tan Pentadiagonal alternating-direction-implicit finite-difference time-domain method for two-dimensional Schrödinger equation . . 1886--1892 Zhong-Li Liu Muse: Multi-algorithm collaborative crystal structure prediction . . . . . . 1893--1900 Un-Hong Wong and Takayuki Aoki and Hon-Cheng Wong Efficient magnetohydrodynamic simulations on distributed multi-GPU systems using a novel GPU Direct-MPI hybrid approach . . . . . . . . . . . . 1901--1913 D. Melazzi and V. Lancellotti ADAMANT: a surface and volume integral-equation solver for the analysis and design of helicon plasma sources . . . . . . . . . . . . . . . . 1914--1925 Pjotrs Grisins and Igor E. Mazets Metropolis--Hastings thermal state sampling for numerical simulations of Bose--Einstein condensates . . . . . . . 1926--1931 Attila Boer GPU-based simulation of the long-range Potts model via parallel tempering . . . 1932--1937 H. Doerk and F. Jenko Towards optimal explicit time-stepping schemes for the gyrokinetic equations 1938--1946 Sunil Kumar and Mohammad Mehdi Rashidi New analytical method for gas dynamics equation arising in shock fronts . . . . 1947--1954 F. D. Colavecchia Accelerating spectral atomic and molecular collisions methods with graphics processing units . . . . . . . 1955--1964 Xueshang Feng and Changqing Xiang and Dingkun Zhong and Yufen Zhou and Liping Yang and Xiaopeng Ma SIP--CESE MHD model of solar wind with adaptive mesh refinement of hexahedral meshes . . . . . . . . . . . . . . . . . 1965--1980 Cedric Schreiner and Felix Spanier Wave-particle-interaction in kinetic plasmas . . . . . . . . . . . . . . . . 1981--1986 James P. Larentzos and John K. Brennan and Joshua D. Moore and Martin Lísal and William D. Mattson Parallel implementation of isothermal and isoenergetic Dissipative Particle Dynamics using Shardlow-like splitting algorithms . . . . . . . . . . . . . . . 1987--1998 Kai Liu and Xinyuan Wu Multidimensional ARKN methods for general oscillatory second-order initial value problems . . . . . . . . . . . . . 1999--2007 S. Gowrisankar and Srinivasan Natesan Robust numerical scheme for singularly perturbed convection-diffusion parabolic initial-boundary-value problems on equidistributed grids . . . . . . . . . 2008--2019 Weipeng Hu and Zichen Deng and Yu Zhang Multi-symplectic method for peakon--antipeakon collision of quasi-Degasperis--Procesi equation . . . 2020--2028 H. Wan Chan Tseung and C. Beltran A graphics processor-based intranuclear cascade and evaporation simulation . . . 2029--2033 A. Idesman and D. Pham Accurate finite element modeling of acoustic waves . . . . . . . . . . . . . 2034--2045 A. Valentim and M. G. E. da Luz and Carlos E. Fiore Determining efficient temperature sets for the simulated tempering method . . . 2046--2055 M. Petran and J. Letessier and J. Rafelski and G. Torrieri SHARE with CHARM . . . . . . . . . . . . 2056--2079 Xiaochuan Ge and Simon J. Binnie and Dario Rocca and Ralph Gebauer and Stefano Baroni turboTDDFT 2.0-Hybrid functionals and new algorithms within time-dependent density-functional perturbation theory 2080--2089 A. V. Smirnov FIESTA 3: Cluster-parallelizable multiloop numerical calculations in physical regions . . . . . . . . . . . . 2090--2100 Danilo T. Alves and Edney R. Granhen A computer algebra package for calculation of the energy density produced via the dynamical Casimir effect in one-dimensional cavities . . . 2101--2114 Luigi Del Debbio and Nathan Hartland and Steffen Schumann MCgrid: Projecting cross section calculations on grids . . . . . . . . . 2115--2126 E. Akhmatskaya and D. Sokolovski and C. Echeverría-Arrondo Numerical Regge pole analysis of resonance structures in elastic, inelastic and reactive state-to-state integral cross sections . . . . . . . . 2127--2137 Max J. Hoffmann and Sebastian Matera and Karsten Reuter kmos: a lattice kinetic Monte Carlo framework . . . . . . . . . . . . . . . 2138--2150 S. Zaghi OFF, Open source Finite volume Fluid dynamics code: a free, high-order solver based on parallel, modular, object-oriented Fortran API . . . . . . 2151--2194 J. A. Maruhn and P.-G. Reinhard and P. D. Stevenson and A. S. Umar The TDHF code Sky3D . . . . . . . . . . 2195--2216 P. E. Hadjidoukas and P. Angelikopoulos and C. Voglis and D. G. Papageorgiou and I. E. Lagaris NDL-v2.0: a new version of the numerical differentiation library for parallel architectures . . . . . . . . . . . . . 2217--2219
Jeremy Witzens Ab initio calculation of the deformation potential and photoelastic coefficients of silicon with a non-uniform finite-difference solver based on the local density approximation . . . . . . 2221--2231 Rafael B. Frigori Nonextensive lattice gauge theories: Algorithms and methods . . . . . . . . . 2232--2239 Hong-lin Liao and Han-sheng Shi and Ying Zhao Numerical study of fourth-order linearized compact schemes for generalized NLS equations . . . . . . . 2240--2249 Adam Alloul and Neil D. Christensen and Céline Degrande and Claude Duhr and Benjamin Fuks FeynRules 2.0: A complete toolbox for tree-level phenomenology . . . . . . . . 2250--2300 Thomas Müller GeoViS --- Relativistic ray tracing in four-dimensional spacetimes . . . . . . 2301--2308 Arash A. Mostofi and Jonathan R. Yates and Giovanni Pizzi and Young-Su Lee and Ivo Souza and David Vanderbilt and Nicola Marzari An updated version of wannier90: a tool for obtaining maximally-localised Wannier functions . . . . . . . . . . . 2309--2310 Giovanni Pizzi and Dmitri Volja and Boris Kozinsky and Marco Fornari and Nicola Marzari An updated version of BoltzWann: a code for the evaluation of thermoelectric and electronic transport properties with a maximally-localized Wannier functions basis . . . . . . . . . . . . . . . . . 2311--2312
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Seikichi Matsuoka and Shinsuke Satake Application of an improved control-variate scheme to local neoclassical transport simulations . . . 2313--2321 B. C. Allanach and P. Athron and Lewis C. Tunstall and A. Voigt and A. G. Williams Next-to-minimal SOFTSUSY . . . . . . . . 2322--2339 Mikael Leetmaa and Natalia V. Skorodumova KMCLib: a general framework for lattice kinetic Monte Carlo (KMC) simulations 2340--2349 M. Januszewski and M. Kostur Sailfish: a flexible multi-GPU implementation of the lattice Boltzmann method . . . . . . . . . . . . . . . . . 2350--2368 P. Halder and A. Chakraborty and P. Deb Roy and H. S. Das Java application for the superposition $T$-matrix code to study the optical properties of cosmic dust aggregates . . 2369--2379 Raimar Sandner and András Vukics C++QEDv2 Milestone 10: a C++/Python application-programming framework for simulating open quantum dynamics . . . . 2380--2382
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc R. F. Abdul and R. L. Mace A method to generate kappa distributed random deviates for particle-in-cell simulations . . . . . . . . . . . . . . 2383--2386 Zhong Peng and Hong Wei Yang and Rui Weng and Yingjie Gao and Ze Kun Yang A research on the CN-ICCG-FDTD algorithm of plasma photonic crystals and the transmission coefficient of electromagnetic wave . . . . . . . . . . 2387--2390 G. Chen and L. Chacón An energy- and charge-conserving, nonlinearly implicit, electromagnetic $1$D-3V Vlasov--Darwin particle-in-cell algorithm . . . . . . . . . . . . . . . 2391--2402 Wenjun Cai and Yushun Wang and Yongzhong Song Derivation of the multisymplectic Crank--Nicolson scheme for the nonlinear Schrödinger equation . . . . . . . . . . 2403--2411 K. C. Ng and Y. H. Hwang and T. W. H. Sheu On the accuracy assessment of Laplacian models in MPS . . . . . . . . . . . . . 2412--2426 J. M. Sellier and I. Dimov The Wigner--Boltzmann Monte Carlo method applied to electron transport in the presence of a single dopant . . . . . . 2427--2435 Andreas Eitzlmayr and Gerold Koscher and Johannes Khinast A novel method for modeling of complex wall geometries in smoothed particle hydrodynamics . . . . . . . . . . . . . 2436--2448 Shuying Zhai and Xinlong Feng and Yinnian He Numerical simulation of the three dimensional Allen--Cahn equation by the high-order compact ADI method . . . . . 2449--2455 S. J. Eder and D. Bianchi and U. Cihak-Bayr and A. Vernes and G. Betz An analysis method for atomistic abrasion simulations featuring rough surfaces and multiple abrasive particles 2456--2466 Ye Fang and Sheng Feng and Ka-Ming Tam and Zhifeng Yun and Juana Moreno and J. Ramanujam and Mark Jarrell Parallel tempering simulation of the three-dimensional Edwards--Anderson model with compact asynchronous multispin coding on GPU . . . . . . . . 2467--2478 Jerome P. Nilmeier and Jaime Marian A rigorous sequential update strategy for parallel kinetic Monte Carlo simulation . . . . . . . . . . . . . . . 2479--2486 Benjamin Ragan-Kelley and John P. Verboncoeur and Ming-Chieh Lin Optimizing physical parameters in $1$-D particle-in-cell simulations with Python 2487--2494 M. Bernaschi and M. Bisson and F. Salvadore Multi-Kepler GPU vs. multi-Intel MIC for spin systems simulations . . . . . . . . 2495--2503 Yi-An Huang and Yu-Ting Hung and Snow H. Tseng An optical target to eliminate impinging light in a light scattering simulation 2504--2509 Walter Rodrigues and A. Pecchia and M. Lopez and M. Auf der Maur and A. Di Carlo Accelerating atomistic calculations of quantum energy eigenstates on graphic cards . . . . . . . . . . . . . . . . . 2510--2518 M. Robinson and N. A. Marks NanoCap: a framework for generating capped carbon nanotubes and fullerenes 2519--2526 J. M. Franco and I. Gómez and L. Rández Optimization of explicit two-step hybrid methods for solving orbital and oscillatory problems . . . . . . . . . . 2527--2537 Andrea Lani and Mehmet Sarp Yalim and Stefaan Poedts A GPU-enabled Finite Volume solver for global magnetospheric simulations on unstructured grids . . . . . . . . . . . 2538--2557 Miguel Cárdenas-Montes and Juan José Rodríguez-Vázquez and Miguel A. Vega-Rodríguez and Ignacio Sevilla-Noarbe and Eusebio Sánchez Alvaro Performance and precision of histogram calculation on GPUs: Cosmological analysis as a case study . . . . . . . . 2558--2565 Mark J. Mawson and Alistair J. Revell Memory transfer optimization for a lattice Boltzmann solver on Kepler architecture nVidia GPUs . . . . . . . . 2566--2574 Yousuke Ohno and Rio Yokota and Hiroshi Koyama and Gentaro Morimoto and Aki Hasegawa and Gen Masumoto and Noriaki Okimoto and Yoshinori Hirano and Huda Ibeid and Tetsu Narumi and Makoto Taiji Petascale molecular dynamics simulation using the fast multipole method on K computer . . . . . . . . . . . . . . . . 2575--2585 Ulf D. Schiller A unified operator splitting approach for multi-scale fluid-particle coupling in the lattice Boltzmann method . . . . 2586--2597 Jungpyo Lee and John C. Wright A block-tridiagonal solver with two-level parallelization for finite element-spectral codes . . . . . . . . . 2598--2608 M. Antuono and B. Bouscasse and A. Colagrossi and S. Marrone A measure of spatial disorder in particle methods . . . . . . . . . . . . 2609--2621 S. Safaei Arshi and A. Zolfaghari and S. M. Mirvakili A multi-objective shuffled frog leaping algorithm for in-core fuel management optimization . . . . . . . . . . . . . . 2622--2628 S. V. Chekanov and E. May and K. Strand and P. Van Gemmeren ProMC: Input-output data format for HEP applications using varint encoding . . . 2629--2635 A. A. Gusev and O. Chuluunbaatar and S. I. Vinitsky and A. G. Abrashkevich POTHEA: a program for computing eigenvalues and eigenfunctions and their first derivatives with respect to the parameter of the parametric self-adjoined $2$D elliptic partial differential equation . . . . . . . . . 2636--2654 C. Schimeczek and G. Wunner Multi-electron systems in strong magnetic fields I: the $2$D Landau--Hartree--Fock--Roothaan method 2655--2662 E. Francisco and A. Martín Pendás Electron number distribution functions from molecular wavefunctions. Version 2 2663--2682 M. Molero-Armenta and Ursula Iturrarán-Viveros and S. Aparicio and M. G. Hernández Optimized OpenCL implementation of the Elastodynamic Finite Integration Technique for viscoelastic media . . . . 2683--2696 A. H. Markosyan and A. Luque and F. J. Gordillo-Vázquez and U. Ebert PumpKin: a tool to find principal pathways in plasma chemical models . . . 2697--2702 Stephan Buehler and Claude Duhr CHAPLIN-Complex Harmonic Polylogarithms in Fortran . . . . . . . . . . . . . . . 2703--2713 Xin Guan and Kristina D. Launey and Mingxia Xie and Lina Bao and Feng Pan and Jerry P. Draayer Numerical algorithm for the standard pairing problem based on the Heine--Stieltjes correspondence and the polynomial approach . . . . . . . . . . 2714--2723 Israel Joel Koenka and Jorge Sáiz and Peter C. Hauser Instrumentino: an open-source modular Python framework for controlling Arduino based experimental instruments . . . . . 2724--2729 Chun Shen and Fengxian Sun and Xinlin Xia Implementation of density-based solver for all speeds in the framework of OpenFOAM . . . . . . . . . . . . . . . . 2730--2741 Koki Murano and Tomoyoshi Shimobaba and Atsushi Sugiyama and Naoki Takada and Takashi Kakue and Minoru Oikawa and Tomoyoshi Ito Fast computation of computer-generated hologram using Xeon Phi coprocessor . . 2742--2757 J. J. Galiana-Merino and C. Pla and A. Fernandez-Cortes and S. Cuezva and J. Ortiz and D. Benavente EnvironmentalWaveletTool: Continuous and discrete wavelet analysis and filtering for environmental time series . . . . . 2758--2770 Tiziano Peraro Ninja: Automated integrand reduction via Laurent expansion for one-loop amplitudes . . . . . . . . . . . . . . . 2771--2797 Thomas Müller Motion4D-library extended . . . . . . . 2798--2799 I. M. Sitnik Development of the FUMILI minimization package . . . . . . . . . . . . . . . . 2800--2800 Mikhail S. Litsarev and Ivan V. Oseledets The DEPOSIT computer code based on the low rank approximations . . . . . . . . 2801--2802
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Hanquan Wang and Zhiguo Xu Projection gradient method for energy functional minimization with a constraint and its application to computing the ground state of spin-orbit-coupled Bose--Einstein condensates . . . . . . . . . . . . . . 2803--2808 Yu-Hang Tang and George Em Karniadakis Accelerating dissipative particle dynamics simulations on GPUs: Algorithms, numerics and applications 2809--2822 Yu-Qing Wang and Rui Jiang and Mao-Bin Hu and Qing-Song Wu Phase transition in a mesoscopic ring with multiple diffusive channels . . . . 2823--2828 Iftikhar Ahmad and Muhammad Maqbool Investigation of the optical properties of P, As and Sb incorporated AlGaX alloys using full potential linearized augmented plane wave method . . . . . . 2829--2833 Ch. Tsitouras and V. N. Katsikis Bounds for variable degree rational $ L_\infty $ approximations to the matrix cosine . . . . . . . . . . . . . . . . . 2834--2840 Hongli Yang and Xianyang Zeng and Xinyuan Wu and Zhengliang Ru A simplified Nyström-tree theory for extended Runge--Kutta--Nyström integrators solving multi-frequency oscillatory systems . . . . . . . . . . 2841--2850 E. G. Evstatiev Application of the phase space action principle to finite-size particle plasma simulations in the drift-kinetic approximation . . . . . . . . . . . . . 2851--2858 Nabil L. Youssef and S. G. Elgendi Computing nullity and kernel vectors using NF-package: Counterexamples . . . 2859--2864 L. Einkemmer and M. Wiesenberger A conservative discontinuous Galerkin scheme for the $2$D incompressible Navier--Stokes equations . . . . . . . . 2865--2873 Iulian Petrila and Vasile Manta Metropolis Monte Carlo analysis of all-optical switching . . . . . . . . . 2874--2878 S. V. Utyuzhnikov Towards development of unsteady near-wall interface boundary conditions for turbulence modeling . . . . . . . . 2879--2884 Jesper Kristensen and Nicholas J. Zabaras Bayesian uncertainty quantification in the evaluation of alloy properties with the cluster expansion method . . . . . . 2885--2892 Jakub Benda and Karel Houfek Collisions of electrons with hydrogen atoms I. Package outline and high energy code . . . . . . . . . . . . . . . . . . 2893--2902 Jakub Benda and Karel Houfek Collisions of electrons with hydrogen atoms II. Low-energy program using the method of the exterior complex scaling 2903--2912 K. Pachucki and M. Puchalski and V. A. Yerokhin Extended Gaussian quadratures for functions with an end-point singularity of logarithmic type . . . . . . . . . . 2913--2919 C. Paissoni and D. Spiliotopoulos and G. Musco and A. Spitaleri GMXPBSA 2.0: a GROMACS tool to perform MM/PBSA and computational alanine scanning . . . . . . . . . . . . . . . . 2920--2929 Michal Czakon and Alexander Mitov Top++: a program for the calculation of the top-pair cross-section at hadron colliders . . . . . . . . . . . . . . . 2930--2938 Lu-Ping Wan and Jian-Xiong Wang FDCHQHP: a Fortran package for heavy quarkonium hadroproduction . . . . . . . 2939--2949 Yi Wang and Long-Qing Chen and Zi-Kui Liu YPHON: a package for calculating phonons of polar materials . . . . . . . . . . . 2950--2968 Xavier Antoine and Romain Duboscq GPELab, a Matlab toolbox to solve Gross--Pitaevskii equations I: Computation of stationary solutions . . 2969--2991 S. Boblest and D. Meyer and G. Wunner Multi-electron systems in strong magnetic fields II: a fixed-phase diffusion quantum Monte Carlo application based on trial functions from a Hartree--Fock--Roothaan method 2992--3000 Andrzej Daniluk RHEED intensities from two-dimensional heteroepitaxial nanoscale systems . . . 3001--3009 Joseph E. Curtis and Hailiang Zhang and Hirsh Nanda SLDMOL: a tool for the structural characterization of thermally disordered membrane proteins . . . . . . . . . . . 3010--3015 Iu. Karpenko and P. Huovinen and M. Bleicher A $ 3 + 1 $ dimensional viscous hydrodynamic code for relativistic heavy ion collisions . . . . . . . . . . . . . 3016--3027 F. D. Witherden and A. M. Farrington and P. E. Vincent PyFR: an open source framework for solving advection-diffusion type problems on streaming architectures using the flux reconstruction approach 3028--3040 Vladimir V. Bytev and Mikhail Yu. Kalmykov and Sven-Olaf Moch HYPERgeometric functions DIfferential REduction (HYPERDIRE): MATHEMATICA based packages for differential reduction of generalized hypergeometric functions: $ F_D $ and $ F_S $ Horn-type hypergeometric functions of three variables . . . . . . . . . . . . . . . 3041--3058 I. V. Grossu and D. Felea and Al. Jipa and C. Besliu and E. Stan and O. Ristea and C. Ristea and M. Calin and T. Esanu and C. Bordeianu and N. Tuturas CMBE v05-Implementation of a toy-model for chaos analysis of relativistic nuclear collisions at the present BNL energies . . . . . . . . . . . . . . . . 3059--3061 A. Stepsys and S. Mickevicius and D. Germanas and R. K. Kalinauskas HOTB: High precision parallel code for calculation of four-particle harmonic oscillator transformation brackets . . . 3062--3064 Alejandro M. Aragón A C++11 implementation of arbitrary-rank tensors for high-performance computing 3065--3066 B. Mohammed-Azizi and D. E. Medjadi Single particle calculations for a Woods--Saxon potential with triaxial deformations, and large Cartesian oscillator basis (TRIAXIAL 2014, Third version of the code Triaxial) . . . . . 3067--3068
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Sibo Wang and Junbo Xu and Hao Wen The aggregation and diffusion of asphaltenes studied by GPU-accelerated dissipative particle dynamics . . . . . 3069--3078 Dmitry S. Efremenko and Diego G. Loyola and Adrian Doicu and Robert J. D. Spurr Multi-core-CPU and GPU-accelerated radiative transfer models based on the discrete ordinate method . . . . . . . . 3079--3089 Diego González and Sergio Davis Fitting of interatomic potentials without forces: a parallel particle swarm optimization algorithm . . . . . . 3090--3093 Omar Ramadan Unconditionally stable split-step finite difference time domain formulations for double-dispersive electromagnetic materials . . . . . . . . . . . . . . . 3094--3098 Xiaopeng Luo and Zhenzhou Lu and Xin Xu Reproducing kernel technique for high dimensional model representations (HDMR) 3099--3108 Hylke C. Donker and Hans De Raedt and Kristel Michielsen Event-by-event simulation of a quantum delayed-choice experiment . . . . . . . 3109--3118 N. Yahyaoui and N. Sfina and S. Abdi-Ben Nasrallah and J.-L. Lazzari and M. Said Electron transport through cubic InGaN/AlGaN resonant tunneling diodes 3119--3126 D. Pfefferlé and W. A. Cooper and J. P. Graves and C. Misev VENUS--LEVIS and its spline-Fourier interpolation of $3$D toroidal magnetic field representation for guiding-centre and full-orbit simulations of charged energetic particles . . . . . . . . . . 3127--3140 Yuri Eremin and Thomas Wriedt New scheme of the Discrete Sources Method for light scattering analysis of a particle breaking interface . . . . . 3141--3150 Z. Kalogiratou and Th. Monovasilis and T. E. Simos A fourth order modified trigonometrically fitted symplectic Runge--Kutta--Nyström method . . . . . . 3151--3155 Ellen Fischermeier and Dominik Bartuschat and Tobias Preclik and Matthieu Marechal and Klaus Mecke Simulation of a hard-spherocylinder liquid crystal with the pe . . . . . . . 3156--3161 Venera Khoromskaia and Boris N. Khoromskij Grid-based lattice summation of electrostatic potentials by assembled rank-structured tensor approximation . . 3162--3174 Johannes M. Dieterich and David B. Krisiloff and Alexander Gaenko and Florian Libisch and Theresa L. Windus and Mark S. Gordon and Emily A. Carter Shared-memory parallelization of a local correlation multi-reference CI program 3175--3188 Jacek Narski and Maurizio Ottaviani Asymptotic Preserving scheme for strongly anisotropic parabolic equations for arbitrary anisotropy direction . . . 3189--3203 D. P. Starinshak and J. M. Owen and J. N. Johnson A new parallel algorithm for constructing Voronoi tessellations from distributed input data . . . . . . . . . 3204--3214 Grigor Aslanyan Cosmo++: an object-oriented C++ library for cosmology . . . . . . . . . . . . . 3215--3227 Andreas Krämer and Marco Hülsmann and Thorsten Köddermann and Dirk Reith Automated parameterization of intermolecular pair potentials using global optimization techniques . . . . . 3228--3239 Valentin V. Karasiev and Travis Sjostrom and S. B. Trickey Finite-temperature orbital-free DFT molecular dynamics: Coupling Profess and Quantum Espresso . . . . . . . . . . . . 3240--3249 Bernd A. Berg Detection of a small shift in a broad distribution . . . . . . . . . . . . . . 3250--3258 Kolahal Bhattacharya and Arnab K. Pal and Gobinda Majumder and Naba K. Mondal Error propagation of the track model and track fitting strategy for the Iron CALorimeter detector in India-based neutrino observatory . . . . . . . . . . 3259--3268 Orlando Ayala and Hossein Parishani and Liu Chen and Bogdan Rosa and Lian-Ping Wang DNS of hydrodynamically interacting droplets in turbulent clouds: Parallel implementation and scalability analysis using $2$D domain decomposition . . . . 3269--3290 B. Ph. van Milligen and P. D. Bons Simplified numerical model for clarifying scaling behavior in the intermediate dispersion regime in homogeneous porous media . . . . . . . . 3291--3301 Colin W. Glass and Steffen Reiser and Gábor Rutkai and Stephan Deublein and Andreas Köster and Gabriela Guevara-Carrion and Amer Wafai and Martin Horsch and Martin Bernreuther and Thorsten Windmann and Hans Hasse and Jadran Vrabec ms2: a molecular simulation tool for thermodynamic properties, new version release . . . . . . . . . . . . . . . . 3302--3306 T. Loke and J. B. Wang and Y. H. Chen OptQC: an optimized parallel quantum compiler . . . . . . . . . . . . . . . . 3307--3316 Michael Borinsky Feynman graph generation and calculations in the Hopf algebra of Feynman graphs . . . . . . . . . . . . . 3317--3330 A. Gehrmann-De Ridder and T. Gehrmann and E. W. N. Glover and G. Heinrich EERAD3: Event shapes and jet rates in electron-positron annihilation at order $ \alpha_s^3 $ . . . . . . . . . . . . . 3331--3340 A. A. Gusev and O. Chuluunbaatar and S. I. Vinitsky and A. G. Abrashkevich KANTBP 3.0: New version of a program for computing energy levels, reflection and transmission matrices, and corresponding wave functions in the coupled-channel adiabatic approach . . . . . . . . . . . 3341--3343 Huy Nguyen and Hao Shi and Jie Xu and Shiwei Zhang CPMC-Lab: a Matlab package for Constrained Path Monte Carlo calculations . . . . . . . . . . . . . . 3344--3357 L. Orgogozo and N. Renon and C. Soulaine and F. Hénon and S. K. Tomer and D. Labat and O. S. Pokrovsky and M. Sekhar and R. Ababou and M. Quintard An open source massively parallel solver for Richards equation: Mechanistic modelling of water fluxes at the watershed scale . . . . . . . . . . . . 3358--3371 J. Baglio and R. Gröber and M. Mühlleitner and D. T. Nhung and H. Rzehak and M. Spira and J. Streicher and K. Walz NMSSMCALC: a program package for the calculation of loop-corrected Higgs boson masses and decay widths in the (complex) NMSSM . . . . . . . . . . . . 3372--3391 Yanbiao Chu and Pierre Gautreau and Tarek Ragab and Cemal Basaran An accelerated algorithm for full band electron-phonon scattering rate computation . . . . . . . . . . . . . . 3392--3397 Yukinobu Koyama and Atsuki Shinbori and Yoshimasa Tanaka and Tomoaki Hori and Masahito Nosé and Satoshi Oimatsu An Interactive Data Language software package to calculate ionospheric conductivity by using numerical models 3398--3405 G. F. Bertsch and L. M. Robledo Combinatorial level densities by the real-time method . . . . . . . . . . . . 3406--3411 Roberto Contino and Margherita Ghezzi and Christophe Grojean and Margarete Mühlleitner and Michael Spira eHDECAY: an implementation of the Higgs effective Lagrangian into HDECAY . . . . 3412--3423 Chao Li and Hailing Xiong $3$D simulation of the Cluster--Cluster Aggregation model . . . . . . . . . . . 3424--3429 Michele Dolfi and Bela Bauer and Sebastian Keller and Alexandr Kosenkov and Timothée Ewart and Adrian Kantian and Thierry Giamarchi and Matthias Troyer Matrix product state applications for the ALPS project . . . . . . . . . . . . 3430--3440
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Anonymous \booktitleComputer Physics Communications --- List of Editors . . . iv--v Kevin Kröninger and Steffen Schumann and Benjamin Willenberg $ (M C)^3 $ --- A Multi-Channel Markov Chain Monte Carlo algorithm for phase-space sampling . . . . . . . . . . 1--10 Gui-Fang Shao and Ting-Na Wang and Tun-Dong Liu and Jun-Ren Chen and Ji-Wen Zheng and Yu-Hua Wen Structural optimization of Pt--Pd alloy nanoparticles using an improved discrete particle swarm optimization algorithm 11--18 Carlos A. Parra-Murillo and Javier Madroñero and Sandro Wimberger Exact numerical methods for a many-body Wannier--Stark system . . . . . . . . . 19--30 YoungJin Kim and Min-Gu Yoo and S. H. Kim and Yong-Su Na Development of vector following mesh generator for analysis of two-dimensional tokamak plasma transport 31--38 Way Lee Cheng and Ali Sheharyar and Reza Sadr and Othmane Bouhali Application of GPU processing for Brownian particle simulation . . . . . . 39--47 P. Gerald Tennyson and G. M. Karthik and G. Phanikumar MPI + OpenCL implementation of a phase-field method incorporating CALPHAD description of Gibbs energies on heterogeneous computing platforms . . . 48--64 B. Werlich and T. Shakirov and M. P. Taylor and W. Paul Stochastic approximation Monte Carlo and Wang--Landau Monte Carlo applied to a continuum polymer model . . . . . . . . 65--70 I. M. Kulikov and I. G. Chernykh and A. V. Snytnikov and B. M. Glinskiy and A. V. Tutukov AstroPhi: a code for complex simulation of the dynamics of astrophysical objects using hybrid supercomputers . . . . . . 71--80 Josh A. Izaac and Jingbo B. Wang pyCTQW: a continuous-time quantum walk simulator on distributed memory computers . . . . . . . . . . . . . . . 81--92 G. Tiana and F. Villa and Y. Zhan and R. Capelli and C. Paissoni and P. Sormanni and E. Heard and L. Giorgetti and R. Meloni MonteGrappa: an iterative Monte Carlo program to optimize biomolecular potentials in simplified models . . . . 93--104 C. Paissoni and D. Spiliotopoulos and G. Musco and A. Spitaleri GMXPBSA 2.1: a GROMACS tool to perform MM/PBSA and computational alanine scanning . . . . . . . . . . . . . . . . 105--107 Bo Xiao and Hao Wang An extended version of the simple and fast Feynman diagram generator EasyFeynDiag . . . . . . . . . . . . . . 108--109
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Banaras Khan and H. A. Rahnamaye Aliabad and N. Razghandi and M. Maqbool and S. Jalali Asadabadi and Iftikhar Ahmad Structural and thermoelectric properties of pure and La, Y doped HoMnO$_3$ for their use as alternative energy materials . . . . . . . . . . . . . . . 1--7 Francis P. Russell and Karl A. Wilkinson and Paul H. J. Kelly and Chris-Kriton Skylaris Optimised three-dimensional Fourier interpolation: an analysis of techniques and application to a linear-scaling density functional theory code . . . . . 8--19 Cyprien Soulaine and Michel Quintard and Hervé Allain and Bertrand Baudouy and Rob Van Weelderen A PISO-like algorithm to simulate superfluid helium flow with the two-fluid model . . . . . . . . . . . . 20--28 Bartlomiej Dybiec and Igor M. Sokolov Estimation of the smallest eigenvalue in fractional escape problems: Semi-analytics and fits . . . . . . . . 29--37 Leonard Z. Li and Hai-Wei Sun and Sik-Chung Tam A spatial sixth-order alternating direction implicit method for two-dimensional cubic nonlinear Schrödinger equations . . . . . . . . . . 38--48 Lech Wiktor Piotrowski and Marco Casolino and Toshikazu Ebisuzaki and Kazuhiro Higashide The simulation of the LANFOS-H food radiation contamination detector using Geant4 package . . . . . . . . . . . . . 49--54 Cristobal A. Navarro and Fabrizio Canfora and Nancy Hitschfeld and Gonzalo Navarro Parallel family trees for transfer matrices in the Potts model . . . . . . 55--71 M. P. Laburta and J. I. Montijano and L. Rández and M. Calvo Numerical methods for non conservative perturbations of conservative problems 72--82 Sapna Pandit and Manoj Kumar and Surabhi Tiwari Numerical simulation of second-order hyperbolic telegraph type equations with variable coefficients . . . . . . . . . 83--90 Dmitry Shcherbakov and Matthias Ehrhardt and Michael Günther and Michael Peardon Force-gradient nested multirate methods for Hamiltonian systems . . . . . . . . 91--97 Antoine Levitt and Marc Torrent Parallel eigensolvers in plane-wave Density Functional Theory . . . . . . . 98--105 Xiao-mei Zhao and Dong-fan Xie and Qi Li Approaching system equilibrium with accurate or not accurate feedback information in a two-route system . . . 106--114 R. J. Hudspith and On behalf of the RBC and UKQCD Collaborations Fourier accelerated conjugate gradient lattice gauge fixing . . . . . . . . . . 115--119 Mauro Del Ben and Ole Schütt and Tim Wentz and Peter Messmer and Jürg Hutter and Joost VandeVondele Enabling simulation at the fifth rung of DFT: Large scale RPA calculations with excellent time to solution . . . . . . . 120--129 Andreas Alpers and Peter Gritzmann and Dmitry Moseev and Mirko Salewski $3$D particle tracking velocimetry using dynamic discrete tomography . . . . . . 130--136 Takashi Minoshima and Yosuke Matsumoto and Takanobu Amano A finite volume formulation of the multi-moment advection scheme for Vlasov simulations of magnetized plasma . . . . 137--151 Paul K. Romano An algorithm for generating random variates from the Madland--Nix fission energy spectrum . . . . . . . . . . . . 152--155 Yuto Miyatake A derivation of energy-preserving exponentially-fitted integrators for Poisson systems . . . . . . . . . . . . 156--161 Y. Lutsyshyn Fast quantum Monte Carlo on a GPU . . . 162--174 W. Ryssens and V. Hellemans and M. Bender and P.-H. Heenen Solution of the Skyrme-HF+BCS equation on a $3$D mesh, II: a new version of the Ev8 code . . . . . . . . . . . . . . . . 175--194 V. Eremenko and N. J. Upadhyay and I. J. Thompson and Ch. Elster and F. M. Nunes and G. Arbanas and J. E. Escher and L. Hlophe and on behalf of the TORUS Collaboration Coulomb wave functions in momentum space 195--203 A. J. C. Crespo and J. M. Domínguez and B. D. Rogers and M. Gómez-Gesteira and S. Longshaw and R. Canelas and R. Vacondio and A. Barreiro and O. García-Feal DualSPHysics: Open-source parallel CFD solver based on Smoothed Particle Hydrodynamics (SPH) . . . . . . . . . . 204--216 P. Horgue and C. Soulaine and J. Franc and R. Guibert and G. Debenest An open-source toolbox for multiphase flow in porous media . . . . . . . . . . 217--226 Manuel Drees and Herbert K. Dreiner and Jong Soo Kim and Daniel Schmeier and Jamie Tattersall CheckMATE: Confronting your favourite new physics model with LHC data . . . . 227--265 Erhan Okuyan and Erkan Okuyan A tool for pattern information extraction and defect quantification from crystal structures . . . . . . . . 266--267
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc C. N. Gilbreth and Y. Alhassid Stabilizing canonical-ensemble calculations in the auxiliary-field Monte Carlo method . . . . . . . . . . . 1--6 H. Grimm-Strele and F. Kupka and H. J. Muthsam Achievable efficiency of numerical methods for simulations of solar surface convection . . . . . . . . . . . . . . . 7--20 S. Jolliet and F. D. Halpern and J. Loizu and A. Mosetto and F. Riva and P. Ricci Numerical approach to the parallel gradient operator in tokamak scrape-off layer turbulence simulations and application to the GBS code . . . . . . 21--32 O. Asunta and J. Govenius and R. Budny and M. Gorelenkova and G. Tardini and T. Kurki-Suonio and A. Salmi and S. Sipilä and the ASDEX Upgrade Team and the JET EFDA Contributors Modelling neutral beams in fusion devices: Beamlet-based model for fast particle simulations . . . . . . . . . . 33--46 Danping Cao and Wenyuan Liao A computational method for full waveform inversion of crosswell seismic data using automatic differentiation . . . . 47--58 Ram Jiwari A hybrid numerical scheme for the numerical solution of the Burgers' equation . . . . . . . . . . . . . . . . 59--67 I. K. Gainullin and M. A. Sonkin High-performance parallel solver for $3$D time-dependent Schrödinger equation for large-scale nanosystems . . . . . . 68--75 A. Gama Goicochea and M. A. Balderas Altamirano and J. D. Hernández and E. Pérez The role of the dissipative and random forces in the calculation of the pressure of simple fluids with dissipative particle dynamics . . . . . 76--81 H. Frerichs and D. Reiter Stability and control of iterated non-linear transport solvers for fusion edge plasmas . . . . . . . . . . . . . . 82--87 Yusuf Yakar and Bekir Çakir and Ayhan Özmen Linear and nonlinear absorption coefficients of spherical two-electron quantum dot . . . . . . . . . . . . . . 88--93 Chung-Yuan Ren and Chen-Shiung Hsue and Yia-Chung Chang A mixed basis density functional approach for low dimensional systems with B-splines . . . . . . . . . . . . . 94--102 Fu-Zhi Dai and Wen-Zheng Zhang An automatic and simple method for specifying dislocation features in atomistic simulations . . . . . . . . . 103--109 Olindo Zanotti and Michael Dumbser A high order special relativistic hydrodynamic and magnetohydrodynamic code with space--time adaptive mesh refinement . . . . . . . . . . . . . . . 110--127 Stephen J. Sangwine Comments on `A structure-preserving method for the quaternion LU decomposition in quaternionic quantum theory' by Minghui Wang and Wenhao Ma 128--130 Bin Tu and Yan Xie and Linbo Zhang and Benzhuo Lu Stabilized finite element methods to simulate the conductances of ion channels . . . . . . . . . . . . . . . . 131--139 Li Guang Jiao and Yew Kam Ho Computation of two-electron screened Coulomb potential integrals in Hylleraas basis sets . . . . . . . . . . . . . . . 140--147 Erik Panzer Algorithms for the symbolic integration of hyperlogarithms with applications to Feynman integrals . . . . . . . . . . . 148--166 G. Poghosyan and S. Matta and A. Streit and M. Bejger and A. Królak Architecture, implementation and parallelization of the software to search for periodic gravitational wave signals . . . . . . . . . . . . . . . . 167--176 Mikael Mortensen and Kristian Valen-Sendstad Oasis: a high-level/high-performance open source Navier--Stokes solver . . . 177--188 Randolf Beerwerth and Heiko Bauke Krylov subspace methods for the Dirac equation . . . . . . . . . . . . . . . . 189--197 Andreas Kempf and Patrick Kilian and Urs Ganse and Cedric Schreiner and Felix Spanier PICPANTHER: a simple, concise implementation of the relativistic moment implicit particle-in-cell method 198--207 J. Rosiek SUSY FLAVOR v2.5: a computational tool for FCNC and CP-violating processes in the MSSM . . . . . . . . . . . . . . . . 208--210
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc J. Kuipers and T. Ueda and J. A. M. Vermaseren Code optimization in FORM . . . . . . . 1--19 Shota Ono and Yoshifumi Noguchi and Ryoji Sahara and Yoshiyuki Kawazoe and Kaoru Ohno TOMBO: All-electron mixed-basis approach to condensed matter physics . . . . . . 20--30 M. Aldegunde and K. Kalna Energy conserving, self-force free Monte Carlo simulations of semiconductor devices on unstructured meshes . . . . . 31--36 N. Mai-Duy and N. Phan-Thien and B. C. Khoo Investigation of particles size effects in Dissipative Particle Dynamics (DPD) modelling of colloidal suspensions . . . 37--46 M. E. Innocenti and A. Beck and T. Ponweiser and S. Markidis and G. Lapenta Introduction of temporal sub-stepping in the Multi-Level Multi-Domain semi-implicit Particle-In-Cell code Parsek2D-MLMD . . . . . . . . . . . . . 47--59 Rong-Bin Chen and Yu-Huang Chiu and Ming-Fa Lin Beating oscillations of magneto-optical spectra in simple hexagonal graphite . . 60--65 Isabelle Charpentier and Claude Dal Cappello Higher-order automatic differentiation of mathematical functions . . . . . . . 66--71 Ding-wei Huang Modeling gridlock at roundabout . . . . 72--76 Konstantin V. Tretiakov and Krzysztof W. Wojciechowski Quick and accurate estimation of the elastic constants using the minimum image method . . . . . . . . . . . . . . 77--83 Dmitry I. Lyakh An efficient tensor transpose algorithm for multicore CPU, Intel Xeon Phi, and NVidia Tesla GPU . . . . . . . . . . . . 84--91 S. Frijters and T. Krüger and J. Harting Parallelised Hoshen--Kopelman algorithm for lattice-Boltzmann simulations . . . 92--98 Zu-Hui Ma and Weng Cho Chew and Yu Mao Wu and Li Jun Jiang A new multilevel method for electrostatic problems through hierarchical loop basis . . . . . . . . 99--105 Zhijie Xu and Dongsheng Li and Wei Xu and Arun Devaraj and Robert Colby and Suntharampillai Thevuthasan and B. P. Geiser and D. J. Larson Simulation of heterogeneous atom probe tip shapes evolution during field evaporation using a level set method and different evaporation models . . . . . . 106--113 T. Kittelmann and M. Boin Polycrystalline neutron scattering for Geant4: NXSG4 . . . . . . . . . . . . . 114--118 Liang-Chun Liu and Jer-Lai Kuo A LAMMPS implementation of volume-temperature replica exchange molecular dynamics . . . . . . . . . . . 119--127 Vladimir V. Bytev and Bernd A. Kniehl HYPERDIRE HYPERgeometric functions DIfferential REduction: Mathematica-based packages for the differential reduction of generalized hypergeometric functions: Horn-type hypergeometric functions of two variables . . . . . . . . . . . . . . . 128--154 K. Kabin and G. Bonner Motion of a charged particle in an axisymmetric longitudinal magnetic field that is inversely proportional to the radius . . . . . . . . . . . . . . . . . 155--161 Mark A. Zentile and James Keaveney and Lee Weller and Daniel J. Whiting and Charles S. Adams and Ifan G. Hughes ElecSus: a program to calculate the electric susceptibility of an atomic ensemble . . . . . . . . . . . . . . . . 162--174 V. M. Shabaev and I. I. Tupitsyn and V. A. Yerokhin QEDMOD: Fortran program for calculating the model Lamb-shift operator . . . . . 175--181 A. V. Smirnov FIRE5: a C++ implementation of Feynman Integral REduction . . . . . . . . . . . 182--191 B. C. Allanach and A. Bednyakov and R. Ruiz de Austri Higher order corrections and unification in the minimal supersymmetric standard model: SOFTSUSY3.5 . . . . . . . . . . . 192--206 Marek Frankowski and Jakub Checi\'nski and Maciej Czapkiewicz Spatial Spectrum Analyzer (SSA): a tool for calculations of spatial distribution of Fast Fourier Transform spectrum from Object Oriented Micromagnetic Framework output data . . . . . . . . . . . . . . 207--212 Fawei Zheng and Ping Zhang and Wenhui Duan Quantum Unfolding: a program for unfolding electronic energy bands of materials . . . . . . . . . . . . . . . 213--219 YoungJin Kim and Min-Gu Yoo and S. H. Kim and Yong-Su Na Corrigendum to ``Development of vector following mesh generator for analysis of two dimensional tokamak plasma transport'' [Comput. Phys. Comm. \bf 186 (2015) 31--38] . . . . . . . . . . . . . 220
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc A. L. Zheleznyakova Molecular dynamics-based triangulation algorithm of free-form parametric surfaces for computer-aided engineering 1--14 Sebastian C. Binder and Esteban A. Hernandez-Vargas and Michael Meyer-Hermann Reducing complexity: an iterative strategy for parameter determination in biological networks . . . . . . . . . . 15--22 Olle Penttinen and Håkan Nilsson A fully synthetic turbulent boundary condition with a homogeneous vortex distribution . . . . . . . . . . . . . . 23--32 Franz Knuth and Christian Carbogno and Viktor Atalla and Volker Blum and Matthias Scheffler All-electron formalism for total energy strain derivatives and stress tensor components for numeric atom-centered orbitals . . . . . . . . . . . . . . . . 33--50 Christoph Begau and Godehard Sutmann Adaptive dynamic load-balancing with irregular domain decomposition for particle simulations . . . . . . . . . . 51--61 M. Motta and G. Bertaina and D. E. Galli and E. Vitali Implementation of the linear method for the optimization of Jastrow--Feenberg and backflow correlations . . . . . . . 62--71 Jungpyo Lee and Antoine Cerfon ECOM: a fast and accurate solver for toroidal axisymmetric MHD equilibria . . 72--88 Z. Guo and S. M. Xiong On solving the $3$-D phase field equations by employing a parallel-adaptive mesh refinement (Para-AMR) algorithm . . . . . . . . . . 89--97 C. D. Sijoy and S. Chaturvedi TRHD: Three-temperature radiation-hydrodynamics code with an implicit non-equilibrium radiation transport using a cell-centered monotonic finite volume scheme on unstructured-grids . . . . . . . . . . . 98--119 Takenobu Nakamura and Shuhei Kawamoto and Wataru Shinoda Precise calculation of the local pressure tensor in Cartesian and spherical coordinates in LAMMPS . . . . 120--128 Arturs Scukins and Vitaliy Bardik and Evgen Pavlov and Dmitry Nerukh Molecular Dynamics implementation of BN2D or `Mercedes Benz' water model . . 129--138 Peter Athron and Jae-hyeon Park and Dominik Stöckinger and Alexander Voigt FlexibleSUSY --- a spectrum generator generator for supersymmetric models . . 139--172 Bo Zhang and Bo Peng and Jingfang Huang and Nikos P. Pitsianis and Xiaobai Sun and Benzhuo Lu Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy . . . . 173--181 César Ayala and Gorazd Cvetic anQCD: a Mathematica package for calculations in general analytic QCD models . . . . . . . . . . . . . . . . . 182--199 David Schaich and Thomas DeGrand Parallel software for lattice $ {\cal N} = 4 $ supersymmetric Yang--Mills theory 200--212 G. Ciaramella and A. Borz\`\i SKRYN: a fast semismooth-Krylov--Newton method for controlling Ising spin systems . . . . . . . . . . . . . . . . 213--223 Ján Busa, Jr. and Ján Busa and Shura Hayryan and Chin-Kun Hu and Ming-Chya Wu CAVE-CL: an OpenCL version of the package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins . . . . . . . . . . . . . . 224--227 Mohan Chen and Junchao Xia and Chen Huang and Johannes M. Dieterich and Linda Hung and Ilgyou Shin and Emily A. Carter Introducing PROFESS 3.0: an advanced program for orbital-free density functional theory molecular dynamics simulations . . . . . . . . . . . . . . 228--230 W. Ryssens and V. Hellemans and M. Bender and P.-H. Heenen Corrigendum to ``Solution of the Skyrme-HF+BCS equation on a $3$D mesh II. A new version of the Ev8 code'' [Comput. Phys. Comm. 187 (2) (2015) 175--194] . . . . . . . . . . . . . . . 231
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Amanda Streib and Noah Streib and Isabel Beichl and Francis Sullivan Stratified sampling for the Ising model: a graph-theoretic approach . . . . . . . 1--8 M. Pfeiffer and A. Mirza and C.-D. Munz and S. Fasoulas Two statistical particle split and merge methods for Particle-in-Cell codes . . . 9--24 Katja Biswas An iterative aggregation and disaggregation method for the steady state solution of large scale continuous systems . . . . . . . . . . . . . . . . 25--32 George Rawitscher A spectral Phase-Amplitude method for propagating a wave function to large distances . . . . . . . . . . . . . . . 33--42 J. Francés and B. Otero and S. Bleda and S. Gallego and C. Neipp and A. Márquez and A. Beléndez Multi-GPU and multi-CPU accelerated FDTD scheme for vibroacoustic applications 43--51 Xian-Ming Gu and Markus Clemens and Ting-Zhu Huang and Liang Li The SCBiCG class of algorithms for complex symmetric linear systems with applications in several electromagnetic model problems . . . . . . . . . . . . . 52--64 M. Vranic and T. Grismayer and J. L. Martins and R. A. Fonseca and L. O. Silva Particle merging algorithm for PIC codes 65--73 P. Kant and O. M. Kind and T. Kintscher and T. Lohse and T. Martini and S. Mölbitz and P. Rieck and P. Uwer HatHor for single top-quark production: Updated predictions and uncertainty estimates for single top-quark production in hadronic collisions . . . 74--89 Ya-Min Quan and Qing-wei Wang and Da-Yong Liu and Xiang-Long Yu and Liang-Jian Zou Numerical optimization algorithm for rotationally invariant multi-orbital slave-boson method . . . . . . . . . . . 90--99 José-María Martí On the correction of conserved variables for numerical RMHD with staggered constrained transport . . . . . . . . . 100--105 Ruhan Thirayatorn and Pairot Moontragoon and Vittaya Amornkitbamrung and Santi Meansiri and Zoran Ikonic Finite-difference calculation of the electronic structure of artificial graphene, the $2$D hexagonal Al$_w$Ga$_{1 - w}$As/GaAs structure with tunable interactions . . . . . . . . . . 106--118 Mikael Leetmaa and Natalia V. Skorodumova Mean square displacements with error estimates from non-equidistant time-step kinetic Monte Carlo simulations . . . . 119--124 Nelson A. Alves and Lucas D. Morero and Leandro G. Rizzi Microcanonical thermostatistics analysis without histograms: Cumulative distribution and Bayesian approaches . . 125--131 Amparo Gil and Javier Segura and Nico M. Temme GammaCHI: a package for the inversion and computation of the gamma and chi-square cumulative distribution functions (central and noncentral) . . . 132--139 J. Spiechowicz and M. Kostur and L. Machura GPU accelerated Monte Carlo simulation of Brownian motors dynamics with CUDA 140--149 Zhong-Li Liu Phasego: a toolkit for automatic calculation and plot of phase diagram 150--158 Torbjörn Sjöstrand and Stefan Ask and Jesper R. Christiansen and Richard Corke and Nishita Desai and Philip Ilten and Stephen Mrenna and Stefan Prestel and Christine O. Rasmussen and Peter Z. Skands An introduction to PYTHIA 8.2 . . . . . 159--177 J. M. Verbeke and J. Randrup and R. Vogt Fission Reaction Event Yield Algorithm, FREYA --- For event-by-event simulation of fission . . . . . . . . . . . . . . . 178--202 Kevin P. Bishop and Steve Constable and Nabil F. Faruk and Pierre-Nicholas Roy OpenMM accelerated MMTK . . . . . . . . 203--208 Ruben Otin and Jaco Verpoorte and Harmen Schippers and Roger Isanta A finite element tool for the electromagnetic analysis of braided cable shields . . . . . . . . . . . . . 209--220 T. C. Scott and Wenxing Zhang Efficient hybrid-symbolic methods for quantum mechanical calculations . . . . 221--234 Sebastian Wouters and Ward Poelmans and Stijn De Baerdemacker and Paul W. Ayers and Dimitri Van Neck CheMPS2: Improved DMRG--SCF routine and correlation functions . . . . . . . . . 235--237
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Mikito Furuichi and Dave A. May Implicit solution of the material transport in Stokes flow simulation: Toward thermal convection simulation surrounded by free surface . . . . . . . 1--11 Xin Xu and Zhenzhou Lu and Xiaopeng Luo A numerical meshless method of soliton-like structures model via an optimal sampling density based kernel interpolation . . . . . . . . . . . . . 12--22 Liang Li and Stéphane Lanteri and Ronan Perrussel A class of locally well-posed hybridizable discontinuous Galerkin methods for the solution of time-harmonic Maxwell's equations . . . 23--31 Peicheng Yu and Xinlu Xu and Viktor K. Decyk and Frederico Fiuza and Jorge Vieira and Frank S. Tsung and Ricardo A. Fonseca and Wei Lu and Luis O. Silva and Warren B. Mori Elimination of the numerical Cerenkov instability for spectral EM--PIC codes 32--47 R. P. Dhote and H. Gomez and R. N. V. Melnik and J. Zu Shape memory alloy nanostructures with coupled dynamic thermo-mechanical effects . . . . . . . . . . . . . . . . 48--53 D. Schouten and A. DeAbreu and B. Stelzer Accelerated matrix element method with parallel computing . . . . . . . . . . . 54--59 Sergey V. Levchenko and Xinguo Ren and Jürgen Wieferink and Rainer Johanni and Patrick Rinke and Volker Blum and Matthias Scheffler Hybrid functionals for large periodic systems in an all-electron, numeric atom-centered basis framework . . . . . 60--69 Marco Vanni Accurate modelling of flow induced stresses in rigid colloidal aggregates 70--90 Ken-ichi Nomura and Patrick E. Small and Rajiv K. Kalia and Aiichiro Nakano and Priya Vashishta An extended-Lagrangian scheme for charge equilibration in reactive molecular dynamics simulations . . . . . . . . . . 91--96 Jens Glaser and Trung Dac Nguyen and Joshua A. Anderson and Pak Lui and Filippo Spiga and Jaime A. Millan and David C. Morse and Sharon C. Glotzer Strong scaling of general-purpose molecular dynamics simulations on GPUs 97--107 G. Turemen and G. Unel and B. Yasatekin A graphical approach to radio frequency quadrupole design . . . . . . . . . . . 108--113 Valentin V. Karasiev and Debajit Chakraborty and S. B. Trickey Improved analytical representation of combinations of Fermi--Dirac integrals for finite-temperature density functional calculations . . . . . . . . 114--123 Han-Xin Yang and Liang Huang Opinion percolation in structured population . . . . . . . . . . . . . . . 124--129 Daniel G. Harvey and Alexander G. Fletcher and James M. Osborne and Joe Pitt-Francis A parallel implementation of an off-lattice individual-based model of multicellular populations . . . . . . . 130--137 Dominic Roehm and Robert S. Pavel and Kipton Barros and Bertrand Rouet-Leduc and Allen L. McPherson and Timothy C. Germann and Christoph Junghans Distributed Database Kriging for Adaptive Sampling (D$^2$KAS) . . . . . . 138--147 Dan Cai and Lijun Zhang and Yong Du Application of locally one-dimensional semi-implicit scheme in phase-field equations . . . . . . . . . . . . . . . 148--155 P. Dunzlaff and R. D. Strauss and M. S. Potgieter Solving Parker's transport equation with stochastic differential equations on GPUs . . . . . . . . . . . . . . . . . . 156--165 Robert Feger and Thomas W. Kephart LieART --- a Mathematica application for Lie algebras and representation theory 166--195 Aleksandr Chernatynskiy and Simon R. Phillpot Phonon Transport Simulator (PhonTS) . . 196--204 C. D. Cantwell and D. Moxey and A. Comerford and A. Bolis and G. Rocco and G. Mengaldo and D. De Grazia and S. Yakovlev and J.-E. Lombard and D. Ekelschot and B. Jordi and H. Xu and Y. Mohamied and C. Eskilsson and B. Nelson and P. Vos and C. Biotto and R. M. Kirby and S. J. Sherwin Nektar++: an open-source spectral/$ h p $ element framework . . . . . . . . . . 205--219 Michal Januszewski and Andrzej Ptok and Dawid Crivelli and Bartlomiej Gardas GPU-based acceleration of free energy calculations in solid state physics . . 220--227 Marcos Rodríguez and Fernando Blesa and Roberto Barrio OpenCL parallel integration of ordinary differential equations: Applications in computational dynamics . . . . . . . . . 228--236 A. Cuoci and A. Frassoldati and T. Faravelli and E. Ranzi OpenSMOKE++: an object-oriented framework for the numerical modeling of reactive systems with detailed kinetic mechanisms . . . . . . . . . . . . . . . 237--264 S. V. Isakov and I. N. Zintchenko and T. F. Rònnow and M. Troyer Optimised simulated annealing for Ising spin glasses . . . . . . . . . . . . . . 265--271 Daniel Muñoz-Santiburcio and Alfonso Hernández-Laguna and Juan I. Soto AWESoMe: a code for the calculation of phase and group velocities of acoustic waves in homogeneous solids . . . . . . 272--277 Aaron H. Brown and Tiffany R. Walsh An improved TIGER2 implementation for NAMD suitable for the Blue Gene architecture . . . . . . . . . . . . . . 278--281 E. Delage and Q. T. Pham and M. Karamitros and H. Payno and V. Stepan and S. Incerti and L. Maigne and Y. Perrot PDB4DNA: Implementation of DNA geometry from the Protein Data Bank (PDB) description for Geant4-DNA Monte-Carlo simulations . . . . . . . . . . . . . . 282--288 Rafael López and Jaime Fernández Rico and Guillermo Ramírez and Ignacio Ema and David Zorrilla DAMQT 2.0: a new version of the DAMQT package for the analysis of electron density in molecules . . . . . . . . . . 289--294 J. L. Cercos-Pita AQUAgpusph, a new free $3$D SPH solver accelerated with OpenCL . . . . . . . . 295--312 D. G. Green and C. N. Harvey SIMLA: Simulating particle dynamics in intense laser and other electromagnetic fields via classical and quantum electrodynamics . . . . . . . . . . . . 313--321 G. Bélanger and F. Boudjema and A. Pukhov and A. Semenov micrOMEGAs4.1: Two dark matter candidates . . . . . . . . . . . . . . . 322--329 Bin Zhang and Zengxiu Zhao SLIMP: Strong laser interaction model package for atoms and molecules . . . . 330--341 Patrick Ferrand GPScan.VI: a general-purpose LabVIEW program for scanning imaging or any application requiring synchronous analog voltage generation and data acquisition 342--347 Bertrand Thierry and Xavier Antoine and Chokri Chniti and Hasan Alzubaidi $ \mu $-diff: an open-source Matlab toolbox for computing multiple scattering problems by disks . . . . . . 348--362
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc C. Masato Nakano and Hye Suk Byun and Heng Ma and Tao Wei and Mohamed Y. El-Naggar A framework for stochastic simulations and visualization of biological electron-transfer dynamics . . . . . . . 1--9 S. Blanes Explicit symplectic RKN methods for perturbed non-autonomous oscillators: Splitting, extended and exponentially fitting methods . . . . . . . . . . . . 10--18 Medha Sharma and M. A. H. Ahsan Organization of the Hilbert space for exact diagonalization of Hubbard model 19--29 A. S. M. Jiao and P. W. M. Tsang and T.-C. Poon Restoration of digital off-axis Fresnel hologram by exemplar and search based image inpainting with enhanced computing speed . . . . . . . . . . . . . . . . . 30--37 Yousef El-Kurdi and Maryam Mehri Dehnavi and Warren J. Gross and Dennis Giannacopoulos Parallel finite element technique using Gaussian belief propagation . . . . . . 38--48 Haiyan Li and Yunbao Huang and Shaoen Jiang and Longfei Jing and Yongkun Ding An efficient computational approach for evaluating radiation flux for laser driven inertial confinement fusion targets . . . . . . . . . . . . . . . . 49--54 Ram Jiwari Lagrange interpolation and modified cubic B-spline differential quadrature methods for solving hyperbolic partial differential equations with Dirichlet and Neumann boundary conditions . . . . 55--65 Joaquín Peralta and Claudia Loyola and Sergio Davis A GPU enhanced approach to identify atomic vacancies in solid materials . . 66--71 Hai-Xia Cheng and Yao-Wen Hu and Xiao-Xu Wang and Guo-Hua Zhang and Zhi-Wei An and Zhen-Feng Zhang and Biao Zhang and Tao Zhou and Ping Qian and Ying Liu and Nan-Xian Chen The phase stability, magnetic and vibrational properties of A$_2$Ni$_{21}$B$_6$ ($ A = $ Th, U) and Ce$_3$Pd$_{20}$Si$_6$ . . . . . . . . . 72--77 Robert A. Bell and Simon M.-M. Dubois and Michael C. Payne and Arash A. Mostofi Electronic transport calculations in the \sc onetep code: Implementation and applications . . . . . . . . . . . . . . 78--88 Dai-Mei Zhou and Yu-Liang Yan and Xing-Long Li and Xiao-Mei Li and Bao-Guo Dong and Xu Cai and Ben-Hao Sa An upgraded issue of the parton and hadron cascade model, PACIAE 2.2 . . . . 89--94 Xavier Antoine and Romain Duboscq GPELab, a Matlab toolbox to solve Gross--Pitaevskii equations II: Dynamics and stochastic simulations . . . . . . . 95--117 Hong Ding and Bharat Medasani and Wei Chen and Kristin A. Persson and Maciej Haranczyk and Mark Asta PyDII: a Python framework for computing equilibrium intrinsic point defect concentrations and extrinsic solute site preferences in intermetallic compounds 118--123 Tasmiat Rahman and Kristel Fobelets Efficient tool flow for $3$D photovoltaic modelling . . . . . . . . . 124--130 Hendrik Sträter PARPLE: Detailed automatized and parallel evaluation of luminescence mappings . . . . . . . . . . . . . . . . 131--137 Jürgen Waxenegger and Andreas Trügler and Ulrich Hohenester Plasmonics simulations with the MNPBEM toolbox: Consideration of substrates and layer structures . . . . . . . . . . . . 138--150
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc P. Lee and J.-L. Vay Efficiency of the Perfectly Matched Layer with high-order finite difference and pseudo-spectral Maxwell solvers . . 1--9 Tak Pui Lou and Bernhard Ludewigt MMAPDNG: a new, fast code backed by a memory-mapped database for simulating delayed $ \gamma $-ray emission with MCNPX package . . . . . . . . . . . . . 10--17 Daisuke Nishiura and Mikito Furuichi and Hide Sakaguchi Computational performance of a smoothed particle hydrodynamics simulation for shared-memory parallel computing . . . . 18--32 Eduardo X. Miqueles and Carlos A. Pérez and Vanessa I. Suárez and Rafael F. C. Vescovi Grazing-incidence XRF analysis of layered samples: Detailed study of amplitude calculation . . . . . . . . . 33--42 Haksu Moon and Fernando L. Teixeira and Yuri A. Omelchenko Exact charge-conserving scatter-gather algorithm for particle-in-cell simulations on unstructured grids: a geometric perspective . . . . . . . . . 43--53 Yukihiro Komura GPU-based cluster-labeling algorithm without the use of conventional iteration: Application to the Swendsen--Wang multi-cluster spin flip algorithm . . . . . . . . . . . . . . . 54--58 M. Erturk Exponential type orbitals with generalized hyperbolic cosine functions for atomic systems . . . . . . . . . . . 59--63 Svyatoslav Chugunov and Changying Li Parallel implementation of inverse adding-doubling and Monte Carlo multi-layered programs for high performance computing systems with shared and distributed memory . . . . . 64--75 Roberto Barrio and Angeles Dena and Warwick Tucker A database of rigorous and high-precision periodic orbits of the Lorenz model . . . . . . . . . . . . . . 76--83 Bin Zhang and Jianmin Yuan and Zengxiu Zhao DMTDHF: a full dimensional time-dependent Hartree--Fock program for diatomic molecules in strong laser fields . . . . . . . . . . . . . . . . . 84--96 Martin Hunt and Benjamin Haley and Michael McLennan and Marisol Koslowski and Jayathi Murthy and Alejandro Strachan PUQ: a code for non-intrusive uncertainty propagation in computer simulations . . . . . . . . . . . . . . 97--107
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Bastien Grosso and Valentino R. Cooper and Polina Pine and Adham Hashibon and Yuval Yaish and Joan Adler Visualization of electronic density . . 1--13 T. I. Riikilä and T. Tallinen and J. Åström and J. Timonen A discrete-element model for viscoelastic deformation and fracture of glacial ice . . . . . . . . . . . . . . 14--22 Deng Zhao and R. E. Waltz Numerical methods for nonlinear simulations of cyclokinetics illustrating the breakdown of gyrokinetics at high turbulence levels 23--34 E. Endress and C. Pena and K. Sivalingam Variance reduction with practical all-to-all lattice propagators . . . . . 35--48 Konstantinos Kourtzanidis and François Rogier and Jean-Pierre Boeuf ADI--FDTD modeling of microwave plasma discharges in air towards fully three-dimensional simulations . . . . . 49--60 J. D. Ramshaw and C. H. Chang Numerical stability in multifluid gas dynamics with implicit drag forces . . . 61--67 Haruhiko Kohno An efficient, high-order finite element method using the nodal averaging technique for incompressible fluid flows 68--76 Jelena Stankovic and Predrag Marinkovic and Olivera Ciraj-Bjelac and Jelica Kaljevic and Danijela Arandjic and Djordje Lazarevic Toward utilization of MCNP5 particle track output file for simulation problems in photon spectrometry . . . . 77--83 Yukihiro Komura Multi-GPU-based Swendsen--Wang multi-cluster algorithm with reduced data traffic . . . . . . . . . . . . . . 84--94 W. Michael Brown and Jan-Michael Y. Carrillo and Nitin Gavhane and Foram M. Thakkar and Steven J. Plimpton Optimizing legacy molecular dynamics software with directive-based offload 95--101 Y. L. Chen and C. Z. Tian and L. X. Li A key-node finite element method and its application to porous materials . . . . 102--111 Xiang Chen and Aleksandr Chernatynskiy and Liming Xiong and Youping Chen A coherent phonon pulse model for transient phonon thermal transport . . . 112--116 R. Kishor Kumar and Luis E. Young-S. and Dusan Vudragovi\'c and Antun Balaz and Paulsamy Muruganandam and S. K. Adhikari Fortran and C programs for the time-dependent dipolar Gross--Pitaevskii equation in an anisotropic trap . . . . 117--128 Mirco Zerbetto and Diego Frezzato Multidimensional integration through Markovian sampling under steered function morphing: a physical guise from statistical mechanics . . . . . . . . . 129--139 Li Huang and Yilin Wang and Zi Yang Meng and Liang Du and Philipp Werner and Xi Dai $i$QIST: an open source continuous-time quantum Monte Carlo impurity solver toolkit . . . . . . . . . . . . . . . . 140--160 Ansgar Denner and Stefan Dittmaier and Stefan Kallweit and Alexander Mück HAWK 2.0: a Monte Carlo program for Higgs production in vector-boson fusion and Higgs strahlung at hadron colliders 161--171 Martin Wiebusch HEPMath 1.4: a Mathematica package for semi-automatic computations in high energy physics . . . . . . . . . . . . . 172--190 Changru Ma and Layla Martin-Samos and Stefano Fabris and Alessandro Laio and Simone Piccinin QMMMW: a wrapper for QM/MM simulations with Quantum ESPRESSO and LAMMPS . . . . 191--198 M. G. Kozlov and S. G. Porsev and M. S. Safronova and I. I. Tupitsyn CI--MBPT: a package of programs for relativistic atomic calculations based on a method combining configuration interaction and many-body perturbation theory . . . . . . . . . . . . . . . . . 199--213 Erkan Okuyan and Ceyda Okuyan BilKristal 4.0: a tool for crystal parameters extraction and defect quantification . . . . . . . . . . . . . 214--215 J. Avellar and A. L. G. C. Claudino and L. G. S. Duarte and L. A. C. P. da Mota Finding higher order Darboux polynomials for a family of rational first order ordinary differential equations . . . . 216--217 I. V. Grossu and C. Besliu and Al. Jipa and D. Felea and E. Stan and T. Esanu Support for massless particles in Chaos Many-Body Engine simulations of nuclear collisions at relativistic energies . . 218--220 J. Avellar and L. G. S. Duarte and L. A. C. P. da Mota Improving a family of Darboux methods for rational second order ordinary differential equations . . . . . . . . . 221--223
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc T. C. Tsai and H.-S. Yu and M.-S. Hsieh and S. H. Lai and Y.-H. Yang Implicit predictor-corrector central finite difference scheme for the equations of magnetohydrodynamic simulations . . . . . . . . . . . . . . 1--12 John P. Boyd Four ways to compute the inverse of the complete elliptic integral of the first kind . . . . . . . . . . . . . . . . . . 13--18 Xiang Cheng and Stefan Boettcher Jamming in hierarchical networks . . . . 19--26 Xiaogang Yang and J. Ruud van Ommen and Jasper Schoormans and Robert F. Mudde A hybrid tomographic reconstruction algorithm for high speed X-ray tomography . . . . . . . . . . . . . . . 27--35 Martin Schlipf and François Gygi Optimization algorithm for the generation of ONCV pseudopotentials . . 36--44 Denis F. Hinz and Alexander Panchenko and Tae-Yeon Kim and Eliot Fried Particle-based simulations of self-motile suspensions . . . . . . . . 45--57 Bijan Chokoufe Nejad and Thorsten Ohl and Jürgen Reuter Simple, parallel virtual machines for extreme computations . . . . . . . . . . 58--69 R. Haelterman and D. Van Eester Accelerating the convergence of a tokamak modeling code with Aitken's method . . . . . . . . . . . . . . . . . 70--79 Kamil Brádler Hiking a generalized Dyck path: a tractable way of calculating multimode boson evolution operators . . . . . . . 80--91 Y. C. Chang and Waleed E. Mahmoud Simulation of optical excitation spectra of semiconductor nanowires within effective bond orbital model . . . . . . 92--112 Shuvam Sen and Jiten C. Kalita A 4OEC scheme for the biharmonic steady Navier--Stokes equations in non-rectangular domains . . . . . . . . 113--133 Jonathan A. Walsh and Paul K. Romano and Benoit Forget and Kord S. Smith Optimizations of the energy grid search algorithm in continuous-energy Monte Carlo particle transport codes . . . . . 134--142 Matthew P. Kroonblawd and Thomas D. Sewell Strategies for non-uniform sampling of molecular dynamics phase space trajectories of relaxation phenomena . . 143--148 Arman Boromand and Safa Jamali and Joao M. Maia Viscosity measurement techniques in Dissipative Particle Dynamics . . . . . 149--160 Konstantin G. Savvidy The MIXMAX random number generator . . . 161--165 Jürgen Fuhrmann Comparison and numerical treatment of generalised Nernst--Planck models . . . 166--178 R. Pepe and A. Bonfiglioli and A. D'Angola and G. Colonna and R. Paciorri An unstructured shock-fitting solver for hypersonic plasma flows in chemical non-equilibrium . . . . . . . . . . . . 179--193 K. Zhou and S. H. Ni and Z. F. Tian Exponential high-order compact scheme on nonuniform grids for the steady MHD duct flow problems with high Hartmann numbers 194--211 A. Valentim and Claudio J. DaSilva and Carlos E. Fiore Efficient simulated tempering with approximated weights: Applications to first-order phase transitions . . . . . 212--220 Brendan B. Godfrey and Jean-Luc Vay Improved numerical Cherenkov instability suppression in the generalized PSTD PIC algorithm . . . . . . . . . . . . . . . 221--225 Hang Ning and T. E. Simos High algebraic order Runge--Kutta type two-step method with vanished phase-lag and its first, second, third, fourth, fifth and sixth derivatives . . . . . . 226--235 Emilio Gallicchio and Junchao Xia and William F. Flynn and Baofeng Zhang and Sade Samlalsingh and Ahmet Mentes and Ronald M. Levy Asynchronous replica exchange software for grid and heterogeneous computing . . 236--246 Evangelos Voyiatzis and Michael C. Böhm and Florian Müller-Plathe A geometric approach to identify cavities in particle systems . . . . . . 247--254 Nicolas Moreno and Suzana P. Nunes and Victor M. Calo Consistent model reduction of polymer chains in solution in dissipative particle dynamics: Model description . . 255--266 R. A. Hansel and C. N. Brock and B. C. Paikoff and A. R. Tackett and D. G. Walker Automated generation of highly accurate, efficient and transferable pseudopotentials . . . . . . . . . . . . 267--275 A. W. Bray and I. B. Abdurakhmanov and A. S. Kadyrov and D. V. Fursa and I. Bray Solving close-coupling equations in momentum space without singularities . . 276--279 Andres Mena and Jose M. Ferrero and Jose F. Rodriguez Matas GPU accelerated solver for nonlinear reaction-diffusion systems. Application to the electrophysiology problem . . . . 280--289 M. Lulli and M. Bernaschi and G. Parisi Highly optimized simulations on single- and multi-GPU systems of the $3$D Ising spin glass model . . . . . . . . . . . . 290--303 Athanasios Mokos and Benedict D. Rogers and Peter K. Stansby and José M. Domínguez Multi-phase SPH modelling of violent hydrodynamics on GPUs . . . . . . . . . 304--316 K. C. Ng and Y. H. Hwang and T. W. H. Sheu and C. H. Yu Moving Particle Level-Set (MPLS) method for incompressible multiphase flow computation . . . . . . . . . . . . . . 317--334 Pavel F. Bessarab and Valery M. Uzdin and Hannes Jónsson Method for finding mechanism and activation energy of magnetic transitions, applied to skyrmion and antivortex annihilation . . . . . . . . 335--347 Mikhail V. Popov and Tatiana G. Elizarova Smoothed MHD equations for numerical simulations of ideal quasi-neutral gas dynamic flows . . . . . . . . . . . . . 348--361 J. M. Solano-Altamirano and Julio M. Hernández-Pérez DensToolKit: a comprehensive open-source package for analyzing the electron density and its derivative scalar and vector fields . . . . . . . . . . . . . 362--371 L. F. Hernández-García and V. Cabrera-Arenas and L. M. Reséndiz-Mendoza On the convergence of the algorithm for simulating organic solar cells . . . . . 372--379 Ryo Urano and Yuko Okamoto Designed-walk replica-exchange method for simulations of complex systems . . . 380--383 E. V. Aksenova and D. I. Kokorin and V. P. Romanov Simulation of multiple scattering in the systems with complicated phase function 384--389 M. E. Wosniack and E. P. Raposo and G. M. Viswanathan and M. G. E. da Luz A parallel algorithm for random searches 390--397 Olivier Parcollet and Michel Ferrero and Thomas Ayral and Hartmut Hafermann and Igor Krivenko and Laura Messio and Priyanka Seth TRIQS: a toolbox for research on interacting quantum systems . . . . . . 398--415 A. Jablonski The Chandrasekhar function revisited . . 416--428 John Tracey and Filippo Federici Canova and Olli Keisanen and David Z. Gao and Peter Spijker and Bernhard Reischl and Adam S. Foster Flexible and modular virtual scanning probe microscope . . . . . . . . . . . . 429--438 Andrew Ian Duff and M. W. Finnis and Philippe Maugis and Barend J. Thijsse and Marcel H. F. Sluiter MEAMfit: a reference-free modified embedded atom method (RF-MEAM) energy and force-fitting code . . . . . . . . . 439--445 Alfonso Niño and Camelia Muñoz-Caro and Sebastián Reyes APINetworks: a general API for the treatment of complex networks in arbitrary computational environments . . 446--454 Zachary H. Levine and Adam L. Pintar A fixed-memory moving, expanding window for obtaining scatter corrections in X-ray CT and other stochastic averages 455--459 Iurii Timrov and Nathalie Vast and Ralph Gebauer and Stefano Baroni turboEELS --- a code for the simulation of the electron energy loss and inelastic X-ray scattering spectra using the Liouville--Lanczos approach to time-dependent density-functional perturbation theory . . . . . . . . . . 460--469 S. Borowka and G. Heinrich and S. P. Jones and M. Kerner and J. Schlenk and T. Zirke SecDec-3.0: Numerical evaluation of multi-scale integrals beyond one loop 470--491 Rodrigo Aldecoa and Chiara Orsini and Dmitri Krioukov Hyperbolic graph generator . . . . . . . 492--496 David A. Kosower and J. J. Lopez-Villarejo Flowgen: Flowchart-based documentation for C++ codes . . . . . . . . . . . . . 497--505 Christian Y. Cardall and Reuben D. Budiardja GenASiS Basics: Object-oriented utilitarian functionality for large-scale physics simulations . . . . 506--534 Jong Soo Kim and Daniel Schmeier and Jamie Tattersall and Krzysztof Rolbiecki A framework to create customised LHC analyses within CheckMATE . . . . . . . 535--562 Karol Kolodziej carlomat\_3.0, an automatic tool for the electron-positron annihilation into hadrons at low energies . . . . . . . . 563--568 Carlos A. Argüelles Delgado and Jordi Salvado and Christopher N. Weaver A Simple Quantum Integro-Differential Solver (SQuIDS) . . . . . . . . . . . . 569--591 M. Bury and A. van Hameren Numerical evaluation of multi-gluon amplitudes for High Energy Factorization 592--598 A. Butykai and F. M. Mor and R. Gaál and P. Domínguez-García and L. Forró and S. Jeney Calibration of optical tweezers with non-spherical probes via high-resolution detection of Brownian motion . . . . . . 599--610 Mikael Leetmaa and Natalia V. Skorodumova KMCLib 1.1: Extended random number support and technical updates to the KMCLib general framework for kinetic Monte-Carlo simulations . . . . . . . . 611--613 David A. Bonhommeau MCMC$^2$ (version 1.1.1): a Monte Carlo code for multiply charged clusters . . . 614--616 Enrico Bothmann and Nathan Hartland and Steffen Schumann Introducing MCgrid 2.0: Projecting cross section calculations on grids . . . . . 617--618 Laurent Orgogozo RichardsFoam2: a new version of RichardsFoam devoted to the modelling of the vadose zone . . . . . . . . . . . . 619--620
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Hugh F. Wilson Efficient ab initio free energy calculations by classically assisted trajectory sampling . . . . . . . . . . 1--6 Andrzej Biborski and Andrzej P. Kadzielawa and Józef Spalek Combined shared and distributed memory ab-initio computations of molecular-hydrogen systems in the correlated state: Process pool solution and two-level parallelism . . . . . . . 7--16 V. V. Arsoski and N. A. Cukari\'c and M. Z. Tadi\'c and F. M. Peeters An efficient finite-difference scheme for computation of electron states in free-standing and core-shell quantum wires . . . . . . . . . . . . . . . . . 17--26 Safa Jamali and Arman Boromand and Shaghayegh Khani and Joao Maia Gaussian-inspired auxiliary non-equilibrium thermostat (GIANT) for Dissipative Particle Dynamics simulations . . . . . . . . . . . . . . 27--34 Yali Gao and Liquan Mei and Rui Li A time-splitting Galerkin finite element method for the Davey--Stewartson equations . . . . . . . . . . . . . . . 35--42 Ali Shokri and Fatemeh Afshari High-order compact ADI method using predictor-corrector scheme for $2$D complex Ginzburg--Landau equation . . . 43--50 Ziguang Chen and Florin Bobaru Selecting the kernel in a peridynamic formulation: a study for transient heat diffusion . . . . . . . . . . . . . . . 51--60 Motoki Nakata and Masanori Nunami and Tomo-Hiko Watanabe and Hideo Sugama Improved collision operator for plasma kinetic simulations with multi-species ions and electrons . . . . . . . . . . . 61--72 G. Chen and L. Chacón A multi-dimensional, energy- and charge-conserving, nonlinearly implicit, electromagnetic Vlasov--Darwin particle-in-cell algorithm . . . . . . . 73--87 Alejandro López and William Nicholls and Matthew T. Stickland and William M. Dempster CFD study of Jet Impingement Test erosion using Ansys Fluent$^\reg $ and OpenFOAM$^\reg $ . . . . . . . . . . . . 88--95 Jingwen Wu and Hongjiong Tian Functionally-fitted block methods for second order ordinary differential equations . . . . . . . . . . . . . . . 96--108 K. Gilmore and John Vinson and E. L. Shirley and D. Prendergast and C. D. Pemmaraju and J. J. Kas and F. D. Vila and J. J. Rehr Efficient implementation of core-excitation Bethe--Salpeter equation calculations . . . . . . . . . . . . . . 109--117 E. Estevez-Rams and C. Perez-Demydenko and B. Aragón Fernández and R. Lora-Serrano Visualizing long vectors of measurements by use of the Hilbert curve . . . . . . 118--127 Ryo Urano and Yuko Okamoto Deterministic replica-exchange method without pseudo random numbers for simulations of complex systems . . . . . 128--135 Andrew T. Barker and Martin Stoll Domain decomposition in time for PDE-constrained optimization . . . . . . 136--143 Peicheng Yu and Xinlu Xu and Adam Tableman and Viktor K. Decyk and Frank S. Tsung and Frederico Fiuza and Asher Davidson and Jorge Vieira and Ricardo A. Fonseca and Wei Lu and Luis O. Silva and Warren B. Mori Mitigation of numerical Cerenkov radiation and instability using a hybrid finite difference-FFT Maxwell solver and a local charge conserving current deposit . . . . . . . . . . . . . . . . 144--152 Changfeng Xue and Qiongwei Huang and Shaozhong Deng Coulomb Green's function and image potential near a cylindrical diffuse interface . . . . . . . . . . . . . . . 153--168 S. Edvardsson and M. Neuman and P. Edström and H. Olin Solving equations through particle dynamics . . . . . . . . . . . . . . . . 169--181 N. Mohankumar and Soubhadra Sen Some remarks regarding a modified Gauss--Legendre scheme . . . . . . . . . 182--184 Marius Wallraff and Christopher Wiebusch Calculation of oscillation probabilities of atmospheric neutrinos using nuCraft 185--189 C. Voglis and P. E. Hadjidoukas and K. E. Parsopoulos and D. G. Papageorgiou and I. E. Lagaris and M. N. Vrahatis p-MEMPSODE: Parallel and irregular memetic global optimization . . . . . . 190--211 Pierre Hirel Atomsk: a tool for manipulating and converting atomic data files . . . . . . 212--219 Christos Dimitroulis and Theophanes Raptis and Vasilios Raptis POLYANA --- A tool for the calculation of molecular radial distribution functions based on Molecular Dynamics trajectories . . . . . . . . . . . . . . 220--226 Marco Lauricella and Giuseppe Pontrelli and Ivan Coluzza and Dario Pisignano and Sauro Succi JETSPIN: a specific-purpose open-source software for simulations of nanofiber electrospinning . . . . . . . . . . . . 227--238 Celine Degrande Automatic evaluation of UV and $ R_2 $ terms for beyond the Standard Model Lagrangians: a proof-of-principle . . . 239--262 D. Barducci and A. Belyaev and M. Buchkremer and J. Marrouche and S. Moretti and L. Panizzi XQCAT: eXtra Quark Combined Analysis Tool . . . . . . . . . . . . . . . . . . 263--275 Hiren H. Patel Package-X: a Mathematica package for the analytic calculation of one-loop integrals . . . . . . . . . . . . . . . 276--290 I. Hornyak and A. T. Kruppa An algorithm for the calculation of the partial wave expansion of the Coulomb-distorted plane wave . . . . . . 291--297 Yukihiro Komura OpenACC programs of the Swendsen--Wang multi-cluster spin flip algorithm . . . 298--303 Sunhwan Jo and Wei Jiang A generic implementation of replica exchange with solute tempering (REST2) algorithm in NAMD for complex biophysical simulations . . . . . . . . 304--311 Johan Alwall and Claude Duhr and Benjamin Fuks and Olivier Mattelaer and Deniz Gizem Öztürk and Chia-Hsien Shen Computing decay rates for new physics theories with FeynRules and MadGraph 5$_{\rm aMC@NLO}$ . . . . . . . . . . . 312--323 Predrag Lazi\'c CellMatch: Combining two unit cells into a common supercell with minimal strain 324--334 Chao-Hsi Chang and Xian-You Wang and Xing-Gang Wu BCVEGPY2.2: a newly upgraded version for hadronic production of the meson $ B_c $ and its excited states . . . . . . . . . 335--338 Peter Wittek and Luca Calderaro Extended computational kernels in a massively parallel implementation of the Trotter--Suzuki approximation . . . . . 339--340 Zhong-Li Liu Phasego 2.0: Counting full anharmonic effects from high-temperature phonon density of states . . . . . . . . . . . 341--342
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Anonymous Computer Physics Communications --- List of Editors . . . . . . . . . . . . . . . iv--v M. A. Esmaili Sikarudi and A. H. Nikseresht Neumann and Robin boundary conditions for heat conduction modeling using smoothed particle hydrodynamics . . . . 1--11 Yuri Eremin and Thomas Wriedt Discrete Sources Method for light scattering analysis of non-axisymmetric features of a substrate . . . . . . . . 12--21 L. Ciocci Brazzano and L. J. Pellizza and C. L. Matteo and P. A. Sorichetti A Bayesian method for analysing relaxation spectra . . . . . . . . . . . 22--30 Q. Z. Lv and D. J. Jennings and J. Betke and Q. Su and R. Grobe Optimized spatial matrix representations of quantum Hamiltonians . . . . . . . . 31--40 Ianik Plante Calculation of the second term of the exact Green's function of the diffusion equation for diffusion-controlled chemical reactions . . . . . . . . . . . 41--46 E. Camporeale and G. L. Delzanno and B. K. Bergen and J. D. Moulton On the velocity space discretization for the Vlasov--Poisson system: Comparison between implicit Hermite spectral and Particle-in-Cell methods . . . . . . . . 47--58 Xinmin Ge and Hua Wang and Yiren Fan and Yingchang Cao and Hua Chen and Rui Huang Joint inversion of $ T_1 - T_2 $ spectrum combining the iterative truncated singular value decomposition and the parallel particle swarm optimization algorithms . . . . . . . . 59--70 A. Ammon and A. Genz and T. Hartung and K. Jansen and H. Leövey and J. Volmer On the efficient numerical solution of lattice systems with low-order couplings 71--81 Dawei Zheng and Gisela Pöplau and Ursula van Rienen Efficiency optimization of a fast Poisson solver in beam dynamics simulation . . . . . . . . . . . . . . . 82--96 H. Q. Kafri and S. A. Khuri Bratu's problem: a novel approach using fixed-point iterations and Green's functions . . . . . . . . . . . . . . . 97--104 D. Jarema and H. J. Bungartz and T. Görler and F. Jenko and T. Neckel and D. Told Block-structured grids for Eulerian gyrokinetic simulations . . . . . . . . 105--117 Hang Xie and Feng Jiang and Wei E. I. Sha Numerical methods for spin-dependent transport calculations and spin bound states analysis in Rashba waveguides . . 118--127 Szymon Winczewski and Jacek Dziedzic and Jaroslaw Rybicki A highly-efficient technique for evaluating bond-orientational order parameters . . . . . . . . . . . . . . . 128--138 Andreas Stegmeir and David Coster and Omar Maj and Klaus Hallatschek and Karl Lackner The field line map approach for simulations of magnetically confined plasmas . . . . . . . . . . . . . . . . 139--153 Jaron T. Krogel Nexus: a modular workflow management system for quantum simulation codes . . 154--168 Timo Graen and Helmut Grubmüller NuSol --- Numerical solver for the $3$D stationary nuclear Schrödinger equation 169--178 Sandra Vergara-Perez and Marcelo Marucho MPBEC, a Matlab Program for Biomolecular Electrostatic Calculations . . . . . . . 179--194 Vinzenz Maurer T3PS v1.0: Tool for Parallel Processing in Parameter Scans . . . . . . . . . . . 195--215 Khalid Jamil and Siraj-ul-Islam Ahmad and Shahid Manzoor HIBRA: a computer code for heavy ion binary reaction analysis employing ion track detectors . . . . . . . . . . . . 216--221 Petr Hosek and Vojtech Spiwok Metadyn View: Fast web-based viewer of free energy surfaces calculated by metadynamics . . . . . . . . . . . . . . 222--229 T. Hynninen and L. Himanen and V. Parkkinen and T. Musso and J. Corander and A. S. Foster An object oriented Python interface for atomistic simulations . . . . . . . . . 230--237 Hua-Sheng Shao HELAC-Onia 2.0: an upgraded matrix-element and event generator for heavy quarkonium physics . . . . . . . . 238--259 Feng Feng APart 2: a generalized Mathematica Apart function . . . . . . . . . . . . . . . . 260--261 P. J. J. Luukko and E. Räsänen Corrigendum to ``Imaginary time propagation code for large-scale two-dimensional eigenvalue problems in magnetic fields'' [Comput. Phys. Comm. \bf 184(3) (2013) 769--776] . . . . . . 262
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Djurre H. de Jong and Svetlana Baoukina and Helgi I. Ingólfsson and Siewert J. Marrink Martini straight: Boosting performance using a shorter cutoff and GPUs . . . . 1--7 K. Silpaja Chandrasekar and M. V. Sangaranarayanan Exact enumeration of conformations for two and three dimensional lattice proteins . . . . . . . . . . . . . . . . 8--11 R. G. M. van der Sman and M. B. J. Meinders Analysis of improved Lattice Boltzmann phase field method for soluble surfactants . . . . . . . . . . . . . . 12--21 A. V. Vlasenko and A. Köhl and D. Stammer The efficiency of geophysical adjoint codes generated by automatic differentiation tools . . . . . . . . . 22--28 M. Held and M. Wiesenberger and A. Stegmeir Three discontinuous Galerkin schemes for the anisotropic heat conduction equation on non-aligned grids . . . . . . . . . . 29--39 J. Eriksson and S. Conroy and E. Andersson Sundén and C. Hellesen Calculating fusion neutron energy spectra from arbitrary reactant distributions . . . . . . . . . . . . . 40--46 Chiaki Yamaguchi Proposal of a checking parameter in the simulated annealing method applied to the spin glass model . . . . . . . . . . 47--52 S. Sitarek and T. Stacewicz and M. Posyniak Software for retrieval of aerosol particle size distribution from multiwavelength lidar signals . . . . . 53--60 Chun Shen and Zhi Qiu and Huichao Song and Jonah Bernhard and Steffen Bass and Ulrich Heinz The iEBE--VISHNU code package for relativistic heavy-ion collisions . . . 61--85 N. Davidson and T. Przedzinski and Z. Was PHOTOS interface in C++: Technical and physics documentation . . . . . . . . . 86--101 Julio Almansa and Francesc Salvat-Pujol and Gloria Díaz-Londoño and Artur Carnicer and Antonio M. Lallena and Francesc Salvat PENGEOM --- A general-purpose geometry package for Monte Carlo simulation of radiation transport in material systems defined by quadric surfaces . . . . . . 102--113 César Ayala and Gorazd Cvetic anQCD: Fortran programs for couplings at complex momenta in various analytic QCD models . . . . . . . . . . . . . . . . . 114--117 A. Dobrowolski and K. Pomorski and J. Bartel Solving the eigenvalue problem of the nuclear Yukawa-folded mean-field Hamiltonian . . . . . . . . . . . . . . 118--132 J. Solanpää and P. J. J. Luukko and E. Räsänen Bill2d --- A software package for classical two-dimensional Hamiltonian systems . . . . . . . . . . . . . . . . 133--138 Stéphane Balac and Arnaud Fernandez SPIP: a computer program implementing the Interaction Picture method for simulation of light-wave propagation in optical fibre . . . . . . . . . . . . . 139--152 Serguei Patchkovskii and H. G. Muller Simple, accurate, and efficient implementation of $1$-electron atomic time-dependent Schrödinger equation in spherical coordinates . . . . . . . . . 153--169 Miroslav Urbanek and Pavel Soldán Parallel implementation of the time-evolving block decimation algorithm for the Bose--Hubbard model . . . . . . 170--177 Zackary Falls and David C. Lonie and Patrick Avery and Andrew Shamp and Eva Zurek XtalOpt version r9: an open-source evolutionary algorithm for crystal structure prediction . . . . . . . . . . 178--179 Matthew O. Zacate and William E. Evenson Stochastic hyperfine interactions modeling library --- Version 2 . . . . . 180--181
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc G. Oger and D. Le Touzé and D. Guibert and M. de Leffe and J. Biddiscombe and J. Soumagne and J.-G. Piccinali On distributed memory MPI-based parallelization of SPH codes in massive HPC context . . . . . . . . . . . . . . 1--14 Steven B. Beale and Hae-Won Choi and Jon G. Pharoah and Helmut K. Roth and Hrvoje Jasak and Dong Hyup Jeon Open-source computational model of a solid oxide fuel cell . . . . . . . . . 15--26 Christopher Barrett and Lin-Wang Wang A systematic fitting procedure for accurate force field models to reproduce ab initio phonon spectra of nanostructures . . . . . . . . . . . . . 27--36 D. M. Kennes and C. Karrasch Extending the range of real time density matrix renormalization group simulations 37--43 Lajos Szalmás A fast iterative discrete velocity method for ternary gas mixtures flowing through long tubes . . . . . . . . . . . 44--49 Petr Bauer and Vladimír Klement and Tomás Oberhuber and Vítezslav Zabka Implementation of the Vanka-type multigrid solver for the finite element approximation of the Navier--Stokes equations on GPU . . . . . . . . . . . . 50--56 Jaewoon Jung and Chigusa Kobayashi and Toshiyuki Imamura and Yuji Sugita Parallel implementation of $3$D FFT with volumetric decomposition schemes for efficient molecular dynamics simulations 57--65 Sh. Khorasanizade and J. M. M. Sousa A two-dimensional Segmented Boundary Algorithm for complex moving solid boundaries in Smoothed Particle Hydrodynamics . . . . . . . . . . . . . 66--75 L. Di Gallo and C. Reux and F. Imbeaux and J.-F. Artaud and M. Owsiak and B. Saoutic and G. Aiello and P. Bernardi and G. Ciraolo and J. Bucalossi and J.-L. Duchateau and C. Fausser and D. Galassi and P. Hertout and J.-C. Jaboulay and A. Li-Puma and L. Zani Coupling between a multi-physics workflow engine and an optimization framework . . . . . . . . . . . . . . . 76--86 Wenhui Mi and Xuecheng Shao and Chuanxun Su and Yuanyuan Zhou and Shoutao Zhang and Quan Li and Hui Wang and Lijun Zhang and Maosheng Miao and Yanchao Wang and Yanming Ma ATLAS: a real-space finite-difference implementation of orbital-free density functional theory . . . . . . . . . . . 87--95 Phanisri P. Pratapa and Phanish Suryanarayana and John E. Pask Spectral Quadrature method for accurate $ \mathcal {O}(N) $ electronic structure calculations of metals and insulators 96--107 Yibao Li and Hyun Geun Lee and Binhu Xia and Junseok Kim A compact fourth-order finite difference scheme for the three-dimensional Cahn--Hilliard equation . . . . . . . . 108--116 H. P. Bhatt and A. Q. M. Khaliq Fourth-order compact schemes for the numerical simulation of coupled Burgers' equation . . . . . . . . . . . . . . . . 117--138 Zi He and Ru-Shan Chen Fast analysis of wide-band scattering from electrically large targets with time-domain parabolic equation method 139--146 H. Vincenti and J.-L. Vay Detailed analysis of the effects of stencil spatial variations with arbitrary high-order finite-difference Maxwell solver . . . . . . . . . . . . . 147--167 Marian Kupczynski and Hans De Raedt Breakdown of statistical inference from some random experiments . . . . . . . . 168--175 Yu-Xuan He and Liang Li and Stéphane Lanteri and Ting-Zhu Huang Optimized Schwarz algorithms for solving time-harmonic Maxwell's equations discretized by a hybridizable discontinuous Galerkin method . . . . . 176--181 Maxime Lesur Method- and scheme-independent entropy production in turbulent kinetic simulations . . . . . . . . . . . . . . 182--189 Marco Sant and Andrea Gabrieli and Pierfranco Demontis and Giuseppe B. Suffritti InfiniCharges: a tool for generating partial charges via the simultaneous fit of multiframe electrostatic potential (ESP) and total dipole fluctuations (TDF) . . . . . . . . . . . . . . . . . 190--198 P. Descouvemont An $R$-matrix package for coupled-channel problems in nuclear physics . . . . . . . . . . . . . . . . 199--219 T. A. Welsh and D. J. Rowe A computer code for calculations in the algebraic collective model of the atomic nucleus . . . . . . . . . . . . . . . . 220--253 Bernd A. Berg Least square fitting with one explicit parameter less . . . . . . . . . . . . . 254--258 S. Edvardsson and K. Karlsson and H. Olin corr3p\_tr: a particle approach for the general three-body problem . . . . . . . 259--273 Priyanka Seth and Igor Krivenko and Michel Ferrero and Olivier Parcollet TRIQS/CTHYB: a continuous-time quantum Monte Carlo hybridisation expansion solver for quantum impurity problems . . 274--284 C. Carasco COuntLOss in NEutron multiplicity assessment (COLONEMA) . . . . . . . . . 285--290 S. Bn\`a and S. Manservisi and R. Scardovelli and P. Yecko and S. Zaleski Vofi --- A library to initialize the volume fraction scalar field . . . . . . 291--299 Felix Gremse and Andreas Höfter and Lukas Razik and Fabian Kiessling and Uwe Naumann GPU-accelerated adjoint algorithmic differentiation . . . . . . . . . . . . 300--311 G. Ciaramella and A. Borz\`\i A LONE code for the sparse control of quantum systems . . . . . . . . . . . . 312--323 Philipp Neumann and Hanno Flohr and Rahul Arora and Piet Jarmatz and Nikola Tchipev and Hans-Joachim Bungartz MaMiCo: Software design for parallel molecular-continuum flow simulations . . 324--335 Vincent Bonnivard and Moritz Hütten and Emmanuel Nezri and Aldée Charbonnier and Céline Combet and David Maurin CLUMPY: Jeans analysis, $ \gamma $-ray and $ \nu $ fluxes from dark matter (sub-)structures . . . . . . . . . . . . 336--349 D. Regnier and M. Verri\`ere and N. Dubray and N. Schunck FELIX-1.0: a finite element solver for the time dependent generator coordinate method with the Gaussian overlap approximation . . . . . . . . . . . . . 350--363 Cory M. Simon and Berend Smit and Maciej Haranczyk pyIAST: Ideal adsorbed solution theory (IAST) Python package . . . . . . . . . 364--380 Hongliang Lü and Anthony Marchix and Yasuhisa Abe and David Boilley KEWPIE2: a cascade code for the study of dynamical decay of excited nuclei . . . 381--399 Yukihiro Komura and Yutaka Okabe Improved CUDA programs for GPU computing of Swendsen--Wang multi-cluster spin flip algorithm: $2$D and $3$D Ising, Potts, and XY models . . . . . . . . . . 400--401 M. S. Guskova and L. Yu. Barash and L. N. Shchur RNGAVXLIB: Program library for random number generation, AVX realization . . . 402--405 Vladimir Loncar and Antun Balaz and Aleksandar Bogojevi\'c and Srdjan Skrbi\'c and Paulsamy Muruganandam and Sadhan K. Adhikari CUDA programs for solving the time-dependent dipolar Gross--Pitaevskii equation in an anisotropic trap . . . . 406--410 Bogdan Satari\'c and Vladimir Slavni\'c and Aleksandar Beli\'c and Antun Balaz and Paulsamy Muruganandam and Sadhan K. Adhikari Hybrid OpenMP/MPI programs for solving the time-dependent Gross--Pitaevskii equation in a fully anisotropic trap . . 411--417
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Jacopo Corno and Carlo de Falco and Herbert De Gersemo and Sebastian Schöps Isogeometric simulation of Lorentz detuning in superconducting accelerator cavities . . . . . . . . . . . . . . . . 1--7 Nikolas S. Burkoff and Robert J. N. Baldock and Csilla Várnai and David L. Wild and Gábor Csányi Exploiting molecular dynamics in Nested Sampling simulations of small peptides 8--18 D. Regnier and O. Litaize and O. Serot An improved numerical method to compute neutron/gamma deexcitation cascades starting from a high spin state . . . . 19--28 B. F. L. Ward IR-improved DGLAP-CS QCD parton showers in Pythia8 . . . . . . . . . . . . . . . 29--32 Jinliang Yan and Zhiyue Zhang New energy-preserving schemes using Hamiltonian Boundary Value and Fourier pseudospectral methods for the numerical solution of the ``good'' Boussinesq equation . . . . . . . . . . . . . . . . 33--42 Xiaoyang Xu and Xiao-Long Deng An improved weakly compressible SPH method for simulating free surface flows of viscous and viscoelastic fluids . . . 43--62 Chi-Ti Hsieh and Tung-Han Hsieh and Shu-Wei Chang Improving accuracy using subpixel smoothing for multiband effective-mass Hamiltonians of semiconductor nanostructures . . . . . . . . . . . . . 63--76 Xuesong Li and William F. Northrop A Markov Chain-based quantitative study of angular distribution of photons through turbid slabs via isotropic light scattering . . . . . . . . . . . . . . . 77--84 T. V. Laptyeva and E. A. Kozinov and I. B. Meyerov and M. V. Ivanchenko and S. V. Denisov and P. Hänggi Calculating Floquet states of large quantum systems: a parallelization strategy and its cluster implementation 85--94 Perri J. Needham and Ashraf Bhuiyan and Ross C. Walker Extension of the AMBER molecular dynamics software to Intel's Many Integrated Core (MIC) architecture . . . 95--105 Casey N. Brock and Brandon C. Paikoff and Muhammad I. Md Sallih and Alan R. Tackett and D. Greg Walker Force-based optimization of pseudopotentials for non-equilibrium configurations . . . . . . . . . . . . . 106--118 Christian Vorwerk and Caterina Cocchi and Claudia Draxl LayerOptics: Microscopic modeling of optical coefficients in layered materials . . . . . . . . . . . . . . . 119--125 Daniele Linaro and Marco Storace \sc BAL: a library for the brute-force analysis of dynamical systems . . . . . 126--134 Kristian Ejlebjerg Jensen and Gerard Gorman Details of tetrahedral anisotropic mesh adaptation . . . . . . . . . . . . . . . 135--143 Janusz Rosiek MassToMI --- A Mathematica package for an automatic Mass Insertion expansion 144--158 Michal Walczak and Helmut Grubmüller BASDet: Bayesian approach(es) for structure determination from single molecule X-ray diffraction images . . . 159--166 A. Semenov LanHEP --- A package for automatic generation of Feynman rules from the Lagrangian. Version 3.2 . . . . . . . . 167--170 Frank Tabakin QDENSITY/QCWAVE: a Mathematica quantum computer simulation update . . . . . . . 171--172
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc E. Assmann and P. Wissgott and J. Kunes and A. Toschi and P. Blaha and K. Held \tt woptic: Optical conductivity with Wannier functions and adaptive $k$-mesh refinement . . . . . . . . . . . . . . . 1--11 Bartosz D. Wozniak and Freddie D. Witherden and Francis P. Russell and Peter E. Vincent and Paul H. J. Kelly GiMMiK ---- Generating bespoke matrix multiplication kernels for accelerators: Application to high-order Computational Fluid Dynamics . . . . . . . . . . . . . 12--22 Christopher D. Cooper and Lorena A. Barba Poisson--Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code . . . . . . . . . . 23--32 J. Ablinger and A. Behring and J. Blümlein and A. De Freitas and A. von Manteuffel and C. Schneider Calculating three loop ladder and $V$-topologies for massive operator matrix elements by computer algebra . . 33--112 Florian Staub and Peter Athron and Ulrich Ellwanger and Ramona Gröber and Margarete Mühlleitner and Pietro Slavich and Alexander Voigt Higgs mass predictions of public NMSSM spectrum generators . . . . . . . . . . 113--130 Ricardo B. Canelas and Alejandro J. C. Crespo and Jose M. Domínguez and Rui M. L. Ferreira and Moncho Gómez-Gesteira SPH-DCDEM model for arbitrary geometries in free surface solid-fluid flows . . . 131--140 John R. Tramm and Geoffrey Gunow and Tim He and Kord S. Smith and Benoit Forget and Andrew R. Siegel A task-based parallelism and vectorized approach to $3$D Method of Characteristics (MOC) reactor simulation for high performance computing architectures . . . . . . . . . . . . . 141--150 Toru Takahashi and Yuta Shimba and Hiroshi Isakari and Toshiro Matsumoto An efficient blocking M2L translation for low-frequency fast multipole method in three dimensions . . . . . . . . . . 151--164 Phuc T. Luu and T. Tückmantel and A. Pukhov Voronoi particle merging algorithm for PIC codes . . . . . . . . . . . . . . . 165--174 Ondrej Pártl and Michal Benes and Peter Frolkovic and Tissa Illangasekare and Kathleen Smits Numerical modeling of non-isothermal gas flow and NAPL vapor transport in soil 175--187 Chung-Yuan Ren and Yia-Chung Chang and Chen-Shiung Hsue A mixed basis density functional approach for one-dimensional systems with B-splines . . . . . . . . . . . . . 188--195 Michael Wagner and Uwe Hampel and Martina Bieberle Correct averaging in transmission radiography: Analysis of the inverse problem . . . . . . . . . . . . . . . . 196--203 I. A. Surmin and S. I. Bastrakov and E. S. Efimenko and A. A. Gonoskov and A. V. Korzhimanov and I. B. Meyerov Particle-in-Cell laser--plasma simulation on Xeon Phi coprocessors . . 204--210 Ivan Gonoskov and Mattias Marklund Single-step propagators for calculation of time evolution in quantum systems with arbitrary interactions . . . . . . 211--215 Zelimir Marojevi\'c and Ertan Göklü and Claus Lämmerzahl ATUS--PRO: a FEM-based solver for the time-dependent and stationary Gross--Pitaevskii equation . . . . . . . 216--232 Pedro Duarte Santos and Andrea Lani An object-oriented implementation of a parallel Monte Carlo code for radiation transport . . . . . . . . . . . . . . . 233--261 Sergei N. Yurchenko and Lorenzo Lodi and Jonathan Tennyson and Andrey V. Stolyarov Duo: a general program for calculating spectra of diatomic molecules . . . . . 262--275 Björn C. P. Sturmberg and Kokou B. Dossou and Felix J. Lawrence and Christopher G. Poulton and Ross C. McPhedran and C. Martijn de Sterke and Lindsay C. Botten EMUstack: an open source route to insightful electromagnetic computation via the Bloch mode scattering matrix method . . . . . . . . . . . . . . . . . 276--286 Oleg Zatsarinny and Charlotte Froese Fischer DBSR\_HF: a B-spline Dirac--Hartree--Fock program . . . . . . 287--303 Matteo T. Degiacomi and Valentina Erastova and Mark R. Wilson Easy creation of polymeric systems for molecular dynamics with Assemble! . . . 304--309 Helmut Eberl and Vassilis C. Spanos GravitinoPack and decays of supersymmetric metastable particles . . 310--325 Lukas Einkemmer High performance computing aspects of a dimension independent semi-Lagrangian discontinuous Galerkin code . . . . . . 326--336 Endre Somogyi and Andrew Abi Mansour and Peter J. Ortoleva ProtoMD: a prototyping toolkit for multiscale molecular dynamics . . . . . 337--350 Rob Verheyen RGIsearch: a C++ program for the determination of renormalization group invariants . . . . . . . . . . . . . . . 351--355
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Nigel Cundy and Weonjong Lee The eigSUMR inverter for overlap fermions . . . . . . . . . . . . . . . . 1--17 Aviad Roitgrund and Gad Eilam and Shaouly Bar-Shalom Implementation of the manifest left-right symmetric model in FeynRules 18--44 Michael P. Howard and Joshua A. Anderson and Arash Nikoubashman and Sharon C. Glotzer and Athanassios Z. Panagiotopoulos Efficient neighbor list calculation for molecular simulation of colloidal systems using graphics processing units 45--52 Mikael Mortensen and Hans Petter Langtangen High performance Python for direct numerical simulations of turbulent flows 53--65 Rémi Lehe and Manuel Kirchen and Igor A. Andriyash and Brendan B. Godfrey and Jean-Luc Vay A spectral, quasi-cylindrical and dispersion-free Particle-In-Cell algorithm . . . . . . . . . . . . . . . 66--82 Yannick Gillet and Matteo Giantomassi and Xavier Gonze Efficient on-the-fly interpolation technique for Bethe--Salpeter calculations of optical spectra . . . . 83--93 C. D. Sijoy and S. Chaturvedi Combining node-centered parallel radiation transport and higher-order multi-material cell-centered hydrodynamics methods in three-temperature radiation hydrodynamics code TRHD . . . . . . . . 94--109 In-Ho Lee and Young Jun Oh and Sunghyun Kim and Jooyoung Lee and K. J. Chang Ab initio materials design using conformational space annealing and its application to searching for direct band gap silicon crystals . . . . . . . . . . 110--121 Ji Qiang Efficient three-dimensional Poisson solvers in open rectangular conducting pipe . . . . . . . . . . . . . . . . . . 122--127 T. Korpilo and A. D. Gurchenko and E. Z. Gusakov and J. A. Heikkinen and S. J. Janhunen and T. P. Kiviniemi and S. Leerink and P. Niskala and A. A. Perevalov Gyrokinetic full-torus simulations of ohmic tokamak plasmas in circular limiter configuration . . . . . . . . . 128--137 George Rawitscher Tunneling through a barrier with the phase-amplitude method . . . . . . . . . 138--146 A. W. Bray and I. B. Abdurakhmanov and A. S. Kadyrov and D. V. Fursa and I. Bray Solving close-coupling equations in momentum space without singularities II 147--151 Keiichi Ito and Ivo Couckuyt and Silvia Poles and Tom Dhaene Variance-based interaction index measuring heteroscedasticity . . . . . . 152--161 T. P. Kiviniemi and U. Sauerwein The effects of spatial sampling on random noise for gyrokinetic PIC simulations in real space . . . . . . . 162--167 Qing-Xiao Li and Rong-Qiang He and Zhong-Yi Lu Accelerating optimization by tracing valley . . . . . . . . . . . . . . . . . 168--177 Nuno Cardoso and David Emmanuel-Costa and Nuno Gonçalves and C. Simões SOSpin, a C++ library for Yukawa decomposition in $ {\rm SO}(2 N) $ models . . . . . . . . . . . . . . . . . 178--200 Jackelyn A. Martinez and Aleksandr Chernatynskiy and Dundar E. Yilmaz and Tao Liang and Susan B. Sinnott and Simon R. Phillpot Potential Optimization Software for Materials (POSMat) . . . . . . . . . . . 201--211 Connie W. Gao and Joshua W. Allen and William H. Green and Richard H. West Reaction Mechanism Generator: Automatic construction of chemical kinetic mechanisms . . . . . . . . . . . . . . . 212--225 R. Ramis and J. Meyer-ter-Vehn MULTI--IFE --- a one-dimensional computer code for Inertial Fusion Energy (IFE) target simulations . . . . . . . . 226--237 Shuyuan Xiao and Xueli Mu and Tingting Liu and Hong Chen A Mathematica program for the calculation of five-body Moshinsky brackets . . . . . . . . . . . . . . . . 238--244 Guillaume Ducrozet and Félicien Bonnefoy and David Le Touzé and Pierre Ferrant HOS-ocean: Open-source solver for nonlinear waves in open ocean based on High-Order Spectral method . . . . . . . 245--254 Roman N. Lee and Kirill T. Mingulov Introducing SummerTime: a package for high-precision computation of sums appearing in DRA $^1$ method . . . . . . 255--267 M. Rabie and C. M. Franck METHES: a Monte Carlo collision code for the simulation of electron transport in low temperature plasmas . . . . . . . . 268--277 V. Vuorinen and K. Keskinen DNSLab: a gateway to turbulent flow simulation in Matlab . . . . . . . . . . 278--289 Marat Sibaev and Deborah L. Crittenden PyVCI: a flexible open-source code for calculating accurate molecular infrared spectra . . . . . . . . . . . . . . . . 290--297 Maarten Hornikx and Thomas Krijnen and Louis van Harten openPSTD: the open source pseudospectral time-domain method for acoustic propagation . . . . . . . . . . . . . . 298--308 B. Thierry and A. Vion and S. Tournier and M. El Bouajaji and D. Colignon and N. Marsic and X. Antoine and C. Geuzaine GetDDM: an open framework for testing optimized Schwarz methods for time-harmonic wave problems . . . . . . 309--330 Junqing Xu and Calogero R. Natoli and Peter Krüger and Kuniko Hayakawa and Didier Sébilleau and Li Song and Keisuke Hatada ES2MS: an interface package for passing self-consistent charge density and potential from Electronic Structure codes To Multiple Scattering codes . . . 331--338 Christian Bogner MPL --- a program for computations with iterated integrals on moduli spaces of curves of genus zero . . . . . . . . . . 339--353 Andrew Ian Duff MEAMfit: a reference-free modified embedded atom method (RF-MEAM) energy and force-fitting code . . . . . . . . . 354--355
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Shingo Ito and Stephan Irle and Yuko Okamoto Implementation of replica-exchange umbrella sampling in the DFTB+ semiempirical quantum chemistry package 1--10 Bernadett Ács and Gábor Szederkényi and Zsolt Tuza and Zoltán A. Tuza Computing all possible graph structures describing linearly conjugate realizations of kinetic systems . . . . 11--20 Joshua A. Anderson and M. Eric Irrgang and Sharon C. Glotzer Scalable Metropolis Monte Carlo for simulation of hard shapes . . . . . . . 21--30 Zoltán Erdélyi and Mykola Pasichnyy and Volodymyr Bezpalchuk and János J. Tomán and Bence Gajdics and Andriy M. Gusak Stochastic kinetic mean field model . . 31--37 Jingbo Qin and Quanlin Jie and Zhuo Fan Implementing the density matrix embedding theory with the hierarchical mean-field approach . . . . . . . . . . 38--42 Magdalena Schreilechner and Walter Pötz Real-space finite difference scheme for the von Neumann equation with the Dirac Hamiltonian . . . . . . . . . . . . . . 43--54 Miguel Cárdenas-Montes and Juan José Rodríguez-Vázquez and Miguel A. Vega-Rodríguez Bin recycling strategy for improving the histogram precision on GPU . . . . . . . 55--63 C. Teijeiro and T. Hammerschmidt and R. Drautz and G. Sutmann Efficient parallelization of analytic bond-order potentials for large-scale atomistic simulations . . . . . . . . . 64--73 Tao Zhao and Feng-Nan Hwang and Xiao-Chuan Cai Parallel two-level domain decomposition based Jacobi--Davidson algorithms for pyramidal quantum dot simulation . . . . 74--81 Wenlong Wang Simulating thermal boundary conditions of spin-lattice models with weighted averages . . . . . . . . . . . . . . . . 82--87 B. Militzer Computation of the high temperature Coulomb density matrix in periodic boundary conditions . . . . . . . . . . 88--96 David Salac A general, mass-preserving Navier--Stokes projection method . . . . 97--106 F. Bülow and P. Hamberger and H. Nirschl and W. Dörfler A scalable parallel Stokesian Dynamics method for the simulation of colloidal suspensions . . . . . . . . . . . . . . 107--120 V. N. Pomerantsev and V. I. Kukulin and O. A. Rubtsova and S. K. Sakhiev Fast GPU-based calculations in few-body quantum scattering . . . . . . . . . . . 121--131 Peng Zhang and Na Zhang and Chao Gao and Li Zhang and Yuxiang Gao and Yuefan Deng and Danny Bluestein Scalability test of multiscale fluid--platelet model for three top supercomputers . . . . . . . . . . . . . 132--140 M. Vranic and J. L. Martins and R. A. Fonseca and L. O. Silva Classical radiation reaction in particle-in-cell simulations . . . . . . 141--151 Jaewook Kim and M. F. J. Fox and A. R. Field and Y. U. Nam and Y.-C. Ghim Conditions for generating synthetic data to investigate characteristics of fluctuating quantities . . . . . . . . . 152--158 S. Meylan and U. Vimont and S. Incerti and I. Clairand and C. Villagrasa Geant4-DNA simulations using complex DNA geometries generated by the DnaFabric tool . . . . . . . . . . . . . . . . . . 159--169 Tao Zeng and Nicholas Blinov and Grégoire Guillon and Hui Li and Kevin P. Bishop and Pierre-Nicholas Roy MoRiBS-PIMC: a program to simulate molecular rotors in bosonic solvents using path-integral Monte Carlo . . . . 170--188 A. V. Smirnov FIESTA4: Optimized Feynman integral calculations with GPU support . . . . . 189--199 Markus Aichhorn and Leonid Pourovskii and Priyanka Seth and Veronica Vildosola and Manuel Zingl and Oleg E. Peil and Xiaoyu Deng and Jernej Mravlje and Gernot J. Kraberger and Cyril Martins and Michel Ferrero and Olivier Parcollet TRIQS/DFTTools: a TRIQS application for ab initio calculations of correlated materials . . . . . . . . . . . . . . . 200--208 Luis E. Young-S. and Dusan Vudragovi\'c and Paulsamy Muruganandam and Sadhan K. Adhikari and Antun Balaz OpenMP Fortran and C programs for solving the time-dependent Gross--Pitaevskii equation in an anisotropic trap . . . . . . . . . . . . 209--213 Kebo Zhang and Hailing Xiong and Chao Li A new version of code Java for $3$D simulation of the CCA model . . . . . . 214--215 Jakub Benda and Karel Houfek New version of hex-ecs, the B-spline implementation of exterior complex scaling method for solution of electron--hydrogen scattering . . . . . 216--217
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Yue Wang and Jianguo Wang and Zaigao Chen and Guoxin Cheng and Pan Wang Three-dimensional simple conformal symplectic particle-in-cell methods for simulations of high power microwave devices . . . . . . . . . . . . . . . . 1--12 E. Maras and O. Trushin and A. Stukowski and T. Ala-Nissila and H. Jónsson Global transition path search for dislocation formation in Ge on Si(001) 13--21 Peng Wang and Zhaoli Guo A semi-implicit gas-kinetic scheme for smooth flows . . . . . . . . . . . . . . 22--31 Ioan Hadade and Luca di Mare Modern multicore and manycore architectures: Modelling, optimisation and benchmarking a multiblock CFD code 32--47 Cristóbal A. Navarro and Wei Huang and Youjin Deng Adaptive multi-GPU Exchange Monte Carlo for the $3$D Random Field Ising Model 48--60 Bernie D. Shizgal An efficient nonclassical quadrature for the calculation of nonresonant nuclear fusion reaction rate coefficients from cross section data . . . . . . . . . . . 61--68 Ubaid Ahmed Nisar and Waqas Ashraf and Shamsul Qamar A splitting scheme based on the space--time CE/SE method for solving multi-dimensional hydrodynamical models of semiconductor devices . . . . . . . . 69--86 Jinlian Ren and Tao Jiang and Weigang Lu and Gang Li An improved parallel SPH approach to solve $3$D transient generalized Newtonian free surface flows . . . . . . 87--105 X. Gonze and F. Jollet and F. Abreu Araujo and D. Adams and B. Amadon and T. Applencourt and C. Audouze and J.-M. Beuken and J. Bieder and A. Bokhanchuk and E. Bousquet and F. Bruneval and D. Caliste and M. Côté and F. Dahm and F. Da Pieve and M. Delaveau and M. Di Gennaro and B. Dorado and C. Espejo and G. Geneste and L. Genovese and A. Gerossier and M. Giantomassi and Y. Gillet and D. R. Hamann and L. He and G. Jomard and J. Laflamme Janssen and S. Le Roux and A. Levitt and A. Lherbier and F. Liu and I. Luka\vcevi\'c and A. Martin and C. Martins and M. J. T. Oliveira and S. Poncé and Y. Pouillon and T. Rangel and G.-M. Rignanese and A. H. Romero and B. Rousseau and O. Rubel and A. A. Shukri and M. Stankovski and M. Torrent and M. J. Van Setten and B. Van Troeye and M. J. Verstraete Recent developments in the ABINIT software package . . . . . . . . . . . . 106--131 Isabelle Charpentier Optimized higher-order automatic differentiation for the Faddeeva function . . . . . . . . . . . . . . . . 132--137
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc N. S. Scott Editorial . . . . . . . . . . . . . . . 1 Ayham Zaza and Abeeb A. Awotunde and Faisal A. Fairag and Mayez A. Al-Mouhamed A CUDA based parallel multi-phase oil reservoir simulator . . . . . . . . . . 2--16 A. Bolis and C. D. Cantwell and D. Moxey and D. Serson and S. J. Sherwin An adaptable parallel algorithm for the direct numerical simulation of incompressible turbulent flows using a Fourier spectral/$h p$ element method and MPI virtual topologies . . . . . . . 17--25 Animesh Agarwal and Luigi Delle Site Grand-Canonical Adaptive Resolution Centroid Molecular Dynamics: Implementation and application . . . . . 26--34 Anbang Sun and Markus M. Becker and Detlef Loffhagen PIC/MCC simulation of capacitively coupled discharges: Effect of particle management and integration . . . . . . . 35--44 N. F. Loureiro and W. Dorland and L. Fazendeiro and A. Kanekar and A. Mallet and M. S. Vilelas and A. Zocco Viriato: a Fourier--Hermite spectral code for strongly magnetized fluid--kinetic plasma dynamics . . . . . 45--63 Ilkka Kylänpää and Esa Räsänen Extended Ewald summation technique . . . 64--68 Lukas Einkemmer A resistive magnetohydrodynamics solver using modern C++ and the Boost library 69--77 Vladimir V. Bytev and Bernd A. Kniehl HYPERDIRE --- HYPERgeometric functions DIfferential REduction: Mathematica-based packages for the differential reduction of generalized hypergeometric functions: Lauricella function $ F_c $ of three variables . . 78--83 Bernd A. Kniehl and Andrey F. Pikelner and Oleg L. Veretin mr: a C++ library for the matching and running of the Standard Model parameters 84--96 I. I. Gontchar and M. V. Chushnyakova DFMSPH14: a C-code for the double folding interaction potential of two spherical nuclei . . . . . . . . . . . . 97--102
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Achim Guckenberger and Marcel P. Schraml and Paul G. Chen and Marc Leonetti and Stephan Gekle On the bending algorithms for soft objects in flows . . . . . . . . . . . . 1--23 Adam J. Sierakowski GPU-centric resolved-particle disperse two-phase flow simulation using the Physalis method . . . . . . . . . . . . 24--34 V. Grandgirard and J. Abiteboul and J. Bigot and T. Cartier-Michaud and N. Crouseilles and G. Dif-Pradalier and Ch. Ehrlacher and D. Esteve and X. Garbet and Ph. Ghendrih and G. Latu and M. Mehrenberger and C. Norscini and Ch. Passeron and F. Rozar and Y. Sarazin and E. Sonnendrücker and A. Strugarek and D. Zarzoso A $5$D gyrokinetic full-$f$ global semi-Lagrangian code for flux-driven ion turbulence simulations . . . . . . . . . 35--68 F. Hariri and T. M. Tran and A. Jocksch and E. Lanti and J. Progsch and P. Messmer and S. Brunner and C. Gheller and L. Villard A portable platform for accelerated PIC codes and its application to GPUs using OpenACC . . . . . . . . . . . . . . . . 69--82 Andreas Adelmann and Uldis Locans and Andreas Suter The Dynamic Kernel Scheduler --- Part 1 83--90 Hidekatsu Nemura Instructive discussion of an effective block algorithm for baryon--baryon correlators . . . . . . . . . . . . . . 91--104 Baruch Feldman and Yunkai Zhou A partitioned shift-without-invert algorithm to improve parallel eigensolution efficiency in real-space electronic transport . . . . . . . . . . 105--113 Xisheng Luo and Luying Wang and Wei Ran and Fenghua Qin GPU accelerated cell-based adaptive mesh refinement on unstructured quadrilateral grid . . . . . . . . . . . . . . . . . . 114--122 C.-K. Huang and Y. Zeng and Y. Wang and M. D. Meyers and S. Yi and B. J. Albright Finite grid instability and spectral fidelity of the electrostatic Particle-In-Cell algorithm . . . . . . . 123--135 Anant Dixit and M. Alouani Ab initio calculations of X-ray magnetic circular dichroism spectra within the projector augmented wave method: an implementation into the VASP code . . . 136--144 E. Lorin and X. Yang Frozen Gaussian approximation-based two-level methods for multi-frequency Schrödinger equation . . . . . . . . . . 145--159 Daniel Rohe Hierarchical parallelisation of functional renormalisation group calculations --- hp-fRG . . . . . . . . 160--169 T. Jourdan and G. Stoltz and F. Legoll and L. Monasse An accurate scheme to solve cluster dynamics equations using a Fokker--Planck approach . . . . . . . . 170--178 M. Yu. Trofimov and A. D. Zakharenko and S. B. Kozitskiy Mode Gaussian beam tracing . . . . . . . 179--185 Shi Qiu and Kuang Liu and Veronica Eliasson Parallel implementation of geometrical shock dynamics for two dimensional converging shock waves . . . . . . . . . 186--192 N. Mohankumar and A. Natarajan On the very accurate numerical evaluation of the Generalized Fermi--Dirac Integrals . . . . . . . . . 193--201 T. Dytrych and P. Maris and K. D. Launey and J. P. Draayer and J. P. Vary and D. Langr and E. Saule and M. A. Caprio and U. Catalyurek and M. Sosonkina Efficacy of the SU(3) scheme for ab initio large-scale calculations beyond the lightest nuclei . . . . . . . . . . 202--210 Juan Chen and Jianguo Wang Three-dimensional dispersive hybrid implicit-explicit finite-difference time-domain method for simulations of graphene . . . . . . . . . . . . . . . . 211--216 Hiroshi Tsukahara and Kaoru Iwano and Chiharu Mitsumata and Tadashi Ishikawa and Kanta Ono Implementation of low communication frequency $3$D FFT algorithm for ultra-large-scale micromagnetics simulation . . . . . . . . . . . . . . . 217--220 Tsung-Ming Huang and Wen-Wei Lin and Weichung Wang A hybrid Jacobi--Davidson method for interior cluster eigenvalues with large null-space in three dimensional lossless Drude dispersive metallic photonic crystals . . . . . . . . . . . . . . . . 221--231 Matthew P. Kroonblawd and Nithin Mathew and Shan Jiang and Thomas D. Sewell A generalized crystal-cutting method for modeling arbitrarily oriented crystals in $3$D periodic simulation cells with applications to crystal--crystal interfaces . . . . . . . . . . . . . . . 232--242 Michele Tuttafesta and Giuseppe Pascazio and Gianpiero Colonna Multi-GPU unsteady $2$D flow simulation coupled with a state-to-state chemical kinetics . . . . . . . . . . . . . . . . 243--257 Tony W. H. Sheu and Y. W. Chung and J. H. Li and Y. C. Wang Development of an explicit non-staggered scheme for solving three-dimensional Maxwell's equations . . . . . . . . . . 258--273 T. Siro and A. Harju Exact diagonalization of quantum lattice models on coprocessors . . . . . . . . . 274--281 S. V. Kasilov and A. M. Runov and W. Kernbichler Geometric integrator for charged particle orbits in axisymmetric fusion devices . . . . . . . . . . . . . . . . 282--286 Ren-Chuen Chen and Chun-Hsien Li and Jinn-Liang Liu A posteriori error control in numerical simulations of semiconductor nanodevices 287--297 Ryan Varley ExoData: a Python package to handle large exoplanet catalogue data . . . . . 298--309 Alireza Khorshidi and Andrew A. Peterson Amp: a modular approach to machine learning in atomistic simulations . . . 310--324 P. R. L. Alves and L. G. S. Duarte and L. A. C. P. da Mota Improvement in global forecast for chaotic time series . . . . . . . . . . 325--340 T. Hahn Concurrent Cuba . . . . . . . . . . . . 341--349 Pui-Wai Ma and S. L. Dudarev and C. H. Woo SPILADY: a parallel CPU and GPU code for spin-lattice magnetic molecular dynamics simulations . . . . . . . . . . . . . . 350--361 C. H. J. Eckert and E. Zenker and M. Bussmann and D. Albach HASEonGPU --- an adaptive, load-balanced MPI/GPU-code for calculating the amplified spontaneous emission in high power laser media . . . . . . . . . . . 362--374 Derek Groen and Agastya P. Bhati and James Suter and James Hetherington and Stefan J. Zasada and Peter V. Coveney FabSim: Facilitating computational research through automation on large-scale and distributed e-infrastructures . . . . . . . . . . . 375--385 Rolf Kappl SOLARPROP: Charge-sign dependent solar modulation for everyone . . . . . . . . 386--399 Federico Municchi and Christoph Goniva and Stefan Radl Highly efficient spatial data filtering in parallel using the opensource library CPPPO . . . . . . . . . . . . . . . . . 400--414 Peter Hakel FESTR: Finite-Element Spectral Transfer of Radiation spectroscopic modeling and analysis code . . . . . . . . . . . . . 415--425 Antonino Favata and Andrea Micheletti and Seunghwa Ryu and Nicola M. Pugno An analytical benchmark and a Mathematica program for MD codes: Testing LAMMPS on the 2nd generation Brenner potential . . . . . . . . . . . 426--431 Vladyslav Shtabovenko and Rolf Mertig and Frederik Orellana New developments in FeynCalc 9.0 . . . . 432--444 Jan W. Jaeken and Stefaan Cottenier Solving the Christoffel equation: Phase and group velocities . . . . . . . . . . 445--451 Volker Mosert and Dieter Bauer Photoelectron spectra with Qprop and t-SURFF . . . . . . . . . . . . . . . . 452--463 Nick A. Eaves and Qingan Zhang and Fengshan Liu and Hongsheng Guo and Seth B. Dworkin and Murray J. Thomson CoFlame: a refined and validated numerical algorithm for modeling sooting laminar coflow diffusion flames . . . . 464--477 K. A. S. Croker ngravs: Distinct gravitational interactions in \sc GADGET-2 . . . . . . 478--486 Jakub Checi\'nski and Marek Frankowski MAGE (M-file/Mif Automatic GEnerator): a graphical interface tool for automatic generation of Object Oriented Micromagnetic Framework configuration files and Matlab scripts for results analysis . . . . . . . . . . . . . . . . 487--498 L. J. Titus and A. Ross and F. M. Nunes Transfer reaction code with nonlocal interactions . . . . . . . . . . . . . . 499--517 G. F. Bertsch and J. M. Mehlhaff A finite-temperature Hartree--Fock code for shell-model Hamiltonians . . . . . . 518--523 T. Atay and M. Kaplan and Y. Kilic and N. Karapinar A-Track: a new approach for detection of moving objects in FITS images . . . . . 524--530 T. Loke and J. B. Wang OptQC v1.3: an (updated) optimized parallel quantum compiler . . . . . . . 531--532 David A. Bonhommeau MCMC$^2$ (version 1.1.2): a Monte Carlo code for multiply charged clusters . . . 533--535 Andrzej Daniluk RHEED intensities from two-dimensional heteroepitaxial nanoscale systems of GaN on a Si surface . . . . . . . . . . . . 536--538 P. R. L. Alves and L. G. S. Duarte and L. A. C. P. da Mota A new method for improved global mapping forecast . . . . . . . . . . . . . . . . 539--541 L. G. S. Duarte and L. A. C. P. da Mota and E. Nunez Finding first order differential invariants through the $S$-function . . 542--544 Boris Tomásik DRoplet and hAdron generator for nuclear collisions: an update . . . . . . . . . 545--546 Kebo Zhang and Junsen Zuo and Yifeng Dou and Chao Li and Hailing Xiong Version 3.0 of code Java for $3$D simulation of the CCA model . . . . . . 547--548 Camelia Muñoz-Caro and Alfonso Niño and Sebastián Reyes and Miriam Castillo APINetworks Java. A Java approach to the efficient treatment of large-scale complex networks . . . . . . . . . . . . 549--552
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc T. Rangel and D. Caliste and L. Genovese and M. Torrent A wavelet-based Projector Augmented-Wave (PAW) method: Reaching frozen-core all-electron precision with a systematic, adaptive and localized wavelet basis set . . . . . . . . . . . 1--8 Szilárd Majorosi and Attila Czirják Fourth order real space solver for the time-dependent Schrödinger equation with singular Coulomb potential . . . . . . . 9--28 R. Bakx and R. H. P. Kleiss and F. Versteegen First- and second-order error estimates in Monte Carlo integration . . . . . . . 29--34 R. Aaij and S. Amato and L. Anderlini and S. Benson and M. Cattaneo and M. Clemencic and B. Couturier and M. Frank and V. V. Gligorov and T. Head and C. Jones and I. Komarov and O. Lupton and R. Matev and G. Raven and B. Sciascia and T. Skwarnicki and P. Spradlin and S. Stahl and B. Storaci and M. Vesterinen and others Tesla: an application for real-time data analysis in High Energy Physics . . . . 35--42 Marco Berardi and Andrea Andrisani and Luciano Lopez and Michele Vurro A new data assimilation technique based on ensemble Kalman filter and Brownian bridges: an application to Richards' equation . . . . . . . . . . . . . . . . 43--53 Marc Durand and Etienne Guesnet An efficient Cellular Potts Model algorithm that forbids cell fragmentation . . . . . . . . . . . . . 54--63 Tian-E Fan and Gui-Fang Shao and Qing-Shuang Ji and Ji-Wen Zheng and Tun-dong Liu and Yu-Hua Wen A multi-populations multi-strategies differential evolution algorithm for structural optimization of metal nanoclusters . . . . . . . . . . . . . . 64--72 Souvik Chakraborty and Rajib Chowdhury Modelling uncertainty in incompressible flow simulation using Galerkin based generalized ANOVA . . . . . . . . . . . 73--91 P. Deuar A tractable prescription for large-scale free flight expansion of wavefunctions 92--102 Casey E. Berger and Joaquín E. Drut and William J. Porter Hard-wall and non-uniform lattice Monte Carlo approaches to one-dimensional Fermi gases in a harmonic trap . . . . . 103--108 G. A. Nemnes and Alexandra Palici and A. Manolescu Transparent boundary conditions for time-dependent electron transport in the $R$-matrix method with applications to nanostructured interfaces . . . . . . . 109--116 Mitsuru Honda and Atsushi Fukuyama Development of the fluid-type transport code on the flux coordinates in a tokamak . . . . . . . . . . . . . . . . 117--134 Matthias Puhr and Pavel Buividovich A numerical method to compute derivatives of functions of large complex matrices and its application to the overlap Dirac operator at finite chemical potential . . . . . . . . . . . 135--148 Fabien Bruneval and Tonatiuh Rangel and Samia M. Hamed and Meiyue Shao and Chao Yang and Jeffrey B. Neaton molgw 1: Many-body perturbation theory software for atoms, molecules, and clusters . . . . . . . . . . . . . . . . 149--161 K. Pachucki and M. Zientkiewicz and V. A. Yerokhin H2SOLV: Fortran solver for diatomic molecules in explicitly correlated exponential basis . . . . . . . . . . . 162--168 Bernd A. Berg Corrigendum to ``Least square fitting with one explicit parameter less'' [Comput. Phys. Comm. 200 (2016) 254--258] . . . . . . . . . . . . . . . 169
Anonymous Inside front cover . . . . . . . . . . . ifc--ifc Zhe Ji and Fei Xu and Akiyuki Takahashi and Yu Sun Large scale water entry simulation with smoothed particle hydrodynamics on single- and multi-GPU systems . . . . . 1--12 Nicolas Crouseilles and Lukas Einkemmer and Erwan Faou An asymptotic preserving scheme for the relativistic Vlasov--Maxwell equations in the classical limit . . . . . . . . . 13--26 Yu-Hsin Hsieh and Chi-Ning Chen and Chin-Kun Hu Efficient algorithm for computing exact partition functions of lattice polymer models . . . . . . . . . . . . . . . . . 27--33 Lisha Si and Xiaoyun Liao and Nengji Zhou Large-scale Monte Carlo simulations for the depinning transition in Ising-type lattice models . . . . . . . . . . . . . 34--41 Hans De Raedt and Kristel Michielsen and Karl Hess The digital computer as a metaphor for the perfect laboratory experiment: Loophole-free Bell experiments . . . . . 42--47 L. Gr. Ixaru Numerical approach of some three-body problems . . . . . . . . . . . . . . . . 48--57 R. F. Zhang and S. H. Zhang and Z. J. He and J. Jing and S. H. Sheng Miedema Calculator: a thermodynamic platform for predicting formation enthalpies of alloys within framework of Miedema's Theory . . . . . . . . . . . . 58--69 A. Lamas Daviña and E. Ramos and J. E. Roman Optimized analysis of isotropic high-nuclearity spin clusters with GPU acceleration . . . . . . . . . . . . . . 70--78 Hoon Ryu and Yosang Jeong and Ji-Hoon Kang and Kyu Nam Cho Time-efficient simulations of tight-binding electronic structures with Intel Xeon Phi$^{TM}$ many-core processors . . . . . . . . . . . . . . . 79--87 J. C. S. Rocha and L. A. S. Mól and B. V. Costa Using zeros of the canonical partition function map to detect signatures of a Berezinskii--Kosterlitz--Thouless transition . . . . . . . . . . . . . . . 88--91 J. K. Dewhurst and K. Krieger and S. Sharma and E. K. U. Gross An efficient algorithm for time propagation as applied to linearized augmented plane wave method . . . . . . 92--95 M. Beneke and Y. Kiyo and A. Maier and J. Piclum Near-threshold production of heavy quarks with QQbar\_threshold . . . . . . 96--115 S. Poncé and E. R. Margine and C. Verdi and F. Giustino EPW: Electron-phonon coupling, transport and superconducting properties using maximally localized Wannier functions 116--133 Stefano Carrazza and R. Keith Ellis and Giulia Zanderighi QCDLoop: a comprehensive framework for one-loop scalar integrals . . . . . . . 134--143 Guillaume Vergez and Ionut Danaila and Sylvain Auliac and Frédéric Hecht A finite-element toolbox for the stationary Gross--Pitaevskii equation with rotation . . . . . . . . . . . . . 144--162 Craig Warren and Antonios Giannopoulos and Iraklis Giannakis gprMax: Open source software to simulate electromagnetic wave propagation for Ground Penetrating Radar . . . . . . . . 163--170 N. J. S. Loft and L. B. Kristensen and A. E. Thomsen and A. G. Volosniev and N. T. Zinner CONAN --- The cruncher of local exchange coefficients for strongly interacting confined systems in one dimension . . . 171--182 Ioannis G. Tsoulos and Alexandros Tzallas and Dimitris Tsalikakis PDoublePop: an implementation of parallel genetic algorithm for function optimization . . . . . . . . . . . . . . 183--189 Vladimir Loncar and Luis E. Young-S. and Srdjan Skrbi\'c and Paulsamy Muruganandam and Sadhan K. Adhikari and Antun Balaz OpenMP, OpenMP/MPI, and CUDA/MPI C programs for solving the time-dependent dipolar Gross--Pitaevskii equation . . . 190--196 Zhong-Li Liu and Qian-Ku Hu and Hai-Yan Wang and Xiao-Feng Li Phasego 3.0: Automatic analysis of synthesis and decomposition conditions for compounds . . . . . . . . . . . . . 197--198 I. M. Sitnik The new version of the FUMILIM minimization package . . . . . . . . . . 199 Ashton S. Reimer and Alexei F. Cheviakov Corrigendum to: ``A Matlab-based finite difference solver for the Poisson problem with mixed Dirichlet--Neumann boundary conditions'' [Comput. Phys. Comm. 184(3) (2013) 783--798] . . . . . 200--201
Anonymous Editorial Board . . . . . . . . . . . . ifc--ifc Chao Wang and Håkan Nilsson and Jiandong Yang and Olivier Petit $1$D--$3$D coupling for hydraulic system transient simulations . . . . . . . . . 1--9 Fardin Rouzbahani and Kazem Hejranfar A truly incompressible smoothed particle hydrodynamics based on artificial compressibility method . . . . . . . . . 10--28 Martin Ferrand and Antoine Joly and Christophe Kassiotis and Damien Violeau and Agn\`es Leroy and François-Xavier Morel and Benedict D. Rogers Unsteady open boundaries for SPH using semi-analytical conditions and Riemann solver in $2$D . . . . . . . . . . . . . 29--44 Ilkka Ruokosenmäki and Hossein Gholizade and Ilkka Kylänpää and Tapio T. Rantala Numerical path integral solution to strong Coulomb correlation in one dimensional Hooke's atom . . . . . . . . 45--53 J. T. Childers and T. D. Uram and T. J. LeCompte and M. E. Papka and D. P. Benjamin Adapting the serial Alpgen parton-interaction generator to simulate LHC collisions on millions of parallel threads . . . . . . . . . . . . . . . . 54--59 C. L. Stork and C. C. Ummel and D. S. Stuart and S. Bodily and B. L. Goldblum Dynamic analysis environment for nuclear forensic analyses . . . . . . . . . . . 60--71 I. K. Gainullin High-performance GPU parallel solver for $3$D modeling of electron transfer during ion-surface interaction . . . . . 72--78 Fabio Bacchini and Vyacheslav Olshevsky and Stefaan Poedts and Giovanni Lapenta A new Particle-in-Cell method for modeling magnetized fluids . . . . . . . 79--91 A. Jablonski Multiple elastic scattering of electrons in condensed matter . . . . . . . . . . 92--102 Joshua P. Ellis Ti$k$Z-Feynman: Feynman diagrams with Ti$k$Z . . . . . . . . . . . . . . . . . 103--123 Amparo Gil and Javier Segura and Nico M. Temme Efficient computation of Laguerre polynomials . . . . . . . . . . . . . . 124--131 Haoyu S. Yu and Lucas J. Fiedler and I. M. Alecu and Donald G. Truhlar Computational thermochemistry: Automated generation of scale factors for vibrational frequencies calculated by electronic structure model chemistries 132--138 Fawei Zheng and Ping Zhang Phonon Unfolding: a program for unfolding phonon dispersions of materials . . . . . . . . . . . . . . . 139--144 H. Vincenti and M. Lobet and R. Lehe and R. Sasanka and J.-L. Vay An efficient and portable SIMD algorithm for charge/current deposition in Particle-In-Cell codes . . . . . . . . . 145--154 M. A. Chilenski and I. C. Faust and J. R. Walk eqtools: Modular, extensible, open-source, cross-machine Python tools for working with magnetic equilibria . . 155--162 Pilar Cossio and David Rohr and Fabio Baruffa and Markus Rampp and Volker Lindenstruth and Gerhard Hummer BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images . . . . . . . . . . . 163--171 Alexey E. Nazarov and Roman G. Fedunov and Anatoly I. Ivanov Principals of simulation of ultrafast charge transfer in solution within the multichannel stochastic point-transition model . . . . . . . . . . . . . . . . . 172--180