Last update: Tue Jun 13 08:15:44 MDT 2023
Volume 1, Number 1, October 08, 2013Muhammad Adnan and Alex Singleton and Paul Longley \pkgOACoder: Postcode Coding Tool . . . e5 Luis Pedro Coelho \pkgMahotas: Open source software for scriptable computer vision . . . . . . . e3 Sergey Fomel and Paul Sava and Ioan Vlad and Yang Liu and Vladimir Bashkardin \pkgMadagascar: open-source software project for multidimensional data analysis and reproducible computational experiments . . . . . . . . . . . . . . e8 Daniel Graziotin and Pekka Abrahamsson A Web-based modeling tool for the SEMAT Essence theory of software engineering e4 Derek Groen and Steven Rieder and Simon Portegies Zwart \pkgMPWide: a light-weight library for efficient message passing over wide area networks . . . . . . . . . . . . . . . . e9 Laura Luyten and Frederik Van Cappellen \pkgExpTimer: timer software to facilitate complex, multi-step procedures . . . . . . . . . . . . . . . e2 Sarunas Marciuska and Pekka Abrahamsson \pkgFeature Usage Explorer: Usage Monitoring and Visualization Tool in HTML5 Based Applications . . . . . . . . e7 Konstantin Nikolic and Joaquim Loizu \bionameDrosophila Photo-transduction Simulator . . . . . . . . . . . . . . . e1 Thorsten Wagner and Hans-Gerd Lipinski \pkgIJBlob: An ImageJ Library for Connected Component Analysis and Shape Analysis . . . . . . . . . . . . . . . . e6
Brian Blanton and Chris Lenhardt A Scientist's Perspective on Sustainable Scientific Software . . . . . . . . . . e17 Karl Broman Fourteen Years of \pkgR/qtl: Just Barely Sustainable . . . . . . . . . . . . . . e11 Sou-Cheng Choi \pkgMINRES-QLP Pack and Reliable Reproducible Research via Supportable Scientific Software . . . . . . . . . . e22 Jeremy Cohen and Chris Cantwell and Neil Chue Hong and David Moxey and Malcolm Illingworth and Andrew Turner and John Darlington and Spencer Sherwin Simplifying the Development, Use and Sustainability of HPC Software . . . . . e16 Anshu Dubey and Brian Van Straalen Experiences from Software Engineering of Large Scale AMR Multiphysics Code Frameworks . . . . . . . . . . . . . . . e7 Anshu Dubey and Steve Brandt and Richard Brower and Merle Giles and Paul Hovland and Donald Lamb and Frank Löffler and Boyana Norris and Brian O'Shea and Claudio Rebbi and Marc Snir and Rajeev Thakur and Petros Tzeferacos Software Abstractions and Methodologies for HPC Simulation Codes on Future Architectures . . . . . . . . . . . . . e14 Matthew Forster and Lyn Paterson and Robert Forster \pkgLIIS: A web-based system for culture collections and sample annotation . . . e2 Derek Gaston and John Peterson and Cody Permann and David Andrs and Andrew Slaughter and Jason Miller Continuous Integration for Concurrent Computational Framework and Application Development . . . . . . . . . . . . . . e10 Jeffrey Girard \pkgCARMA: Software for Continuous Affect Rating and Media Annotation . . . e5 Abhisek Hazra \pkgImage Enhancer: A Graphic Editor to Apply Numerous Effects in Digital Image e31 Adam Hughes \pkgpyparty: Intuitive Particle Processing in Python . . . . . . . . . . e26 Sebastian Illing and Christopher Kadow and Kunst Oliver and Ulrich Cubasch \pkgMurCSS: A Tool for Standardized Evaluation of Decadal Hindcast Systems e24 Christian Jacobs and Alexandros Avdis and Gerard Gorman and Matthew Piggott \pkgPyRDM: A Python-based library for automating the management and online publication of scientific software and data . . . . . . . . . . . . . . . . . . e28 Martin Jucker Scientific Visualisation of Atmospheric Data with \pkgParaView . . . . . . . . . e4 Daniel Katz and David Proctor A Framework for Discussing e-Research Infrastructure Sustainability . . . . . e13 Daniel Katz and Sou-Cheng Choi and Hilmar Lapp and Ketan Maheshwari and Frank Löffler and Matthew Turk and Marcus Hanwell and Nancy Wilkins-Diehr and James Hetherington and James Howison and Shel Swenson and Gabrielle Allen and Anne Elster and Bruce Berriman and Colin Venters Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1) . . . e6 Daniel Katz Transitive Credit as a Means to Address Social and Technological Concerns Stemming from Citation and Attribution of Digital Products . . . . . . . . . . e20 W Lenhardt and Stanley Ahalt and Brian Blanton and Laura Christopherson and Ray Idaszak Data Management Lifecycle and Software Lifecycle Management in the Context of Conducting Science . . . . . . . . . . . e15 Frank Löffler and Steven Brandt and Gabrielle Allen and Erik Schnetter \pkgCactus: Issues for Sustainable Simulation Software . . . . . . . . . . e12 Saundra Manning and Lior Shamir \pkgCHLOE: A Software Tool for Automatic Novelty Detection in Microscopy Image Datasets . . . . . . . . . . . . . . . . e25 Reagan Moore and Arcot Rajasekar and Hao Xu Extensible Generic Data Management Software . . . . . . . . . . . . . . . . e9 Shane Mueller and Alena Esposito Computerized Testing Software for Assessing Interference Suppression in Children and Adults: The Bivalent Shape Task (BST) . . . . . . . . . . . . . . . e3 Nicola Osborne and George Hamilton and Stuart Macdonald Historical Post Office Directory Parser (POD Parser) Software From the AddressingHistory Project . . . . . . . e23 Christian Oxvig and Patrick Pedersen and Thomas Arildsen and Jan Òstergaard and Torben Larsen \pkgMagni: A Python Package for Compressive Sampling and Reconstruction of Atomic Force Microscopy Images . . . e29 Nial Peters \pkgAvoPlot: An extensible scientific plotting tool based on \pkgmatplotlib e1 Ikaro Silva and George Moody An Open-source Toolbox for Analysing and Processing \pkgPhysioNet Databases in MATLAB and Octave . . . . . . . . . . . e27 Victoria Stodden and Sheila Miguez Best Practices for Computational Science: Software Infrastructure and Environments for Reproducible and Extensible Research . . . . . . . . . . e21 William Thielicke and Eize Stamhuis \pkgPIVlab --- Towards User-friendly, Affordable and Accurate Digital Particle Image Velocimetry in MATLAB . . . . . . e30 Erik Trainer and Chalalai Chaihirunkarn and James Herbsleb The Big Effects of Short-term Efforts: Mentorship and Code Integration in Open Source Scientific Software . . . . . . . e18 Colin Venters and Lydia Lau and Michael Griffiths and Violeta Holmes and Rupert Ward and Caroline Jay and Charlie Dibsdale and Jie Xu The Blind Men and the Elephant: Towards an Empirical Evaluation Framework for Software Sustainability . . . . . . . . e8 Lynn Zentner and Michael Zentner and Victoria Farnsworth and Michael McLennan and Krishna Madhavan and Gerhard Klimeck \tt nanoHUB.org: Experiences and Challenges in Software Sustainability for a Large Scientific Community . . . . e19
Alice Allen and Judy Schmidt Looking before Leaping: Creating a Software Registry . . . . . . . . . . . e15 Megan Argo The \pkge-MERLIN Data Reduction Pipeline e2 Iain Bethune and Yves Gallot \pkgGenefer: Programs for Finding Large Probable Generalized Fermat Primes . . . e10 Carl Boettiger and Scott Chamberlain and Edmund Hart and Karthik Ram Building Software, Building Community: Lessons from the \pkgrOpenSci Project e8 Edem Dovlo and Natalie Baddour Toolbox for the Computation of $2$D Fourier Transforms in Polar Coordinates via Maple . . . . . . . . . . . . . . . e3 Robert R. Downs and W. Christopher Lenhardt and Erin Robinson and Ethan Davis and Nicholas Weber Community Recommendations for Sustainable Scientific Software . . . . e11 Morteza Haeri and Mohammad Haeri ImageJ Plugin for Analysis of Porous Scaffolds used in Tissue Engineering . . e1 Adam Hughes and Zhaowen Liu and M. Reeves \pkgScikit-spectra: Explorative Spectroscopy in Python . . . . . . . . . e6 Daniel S. Katz and Arfon M. Smith Transitive Credit and \pkgJSON-LD . . . e7 Marlon E. Pierce and Suresh Marru and Chris Mattmann Patching It Up, Pulling It Forward . . . e12 Andrew E. Slaughter and John W. Peterson and Derek R. Gaston and Cody J. Permann and David Andrs and Jason M. Miller Continuous Integration for Concurrent MOOSE Framework and Application Development on GitHub . . . . . . . . . e14 J. S. Spencer and N. S. Blunt and W. A. Vigor and Fionn D. Malone and W. M. C. Foulkes and James J. Shepherd and A. J. W. Thom Open-Source Development Experiences in Scientific Software: The HANDE Quantum Monte Carlo Project . . . . . . . . . . e9 James Stone and John Towse A Working Memory Test Battery: Java-Based Collection of Seven Working Memory Tasks . . . . . . . . . . . . . . e5 Isuru Suriarachchi and Quan Zhou and Beth Plale \pkgKomadu: A Capture and Visualization System for Scientific Data Provenance e4 John G. Wright and B. Sriram Shastry \pkgDiracQ: A Package for Algebraic Manipulation of Non-Commuting Quantum Variables . . . . . . . . . . . . . . . e13
Ayala Allon and Roy Luria \pkgprepdat --- An R Package for Preparing Experimental Data for Statistical Analysis . . . . . . . . . . e43 Christopher Beckham and Mark Hall and Eibe Frank \pkgWekaPyScript: Classification, Regression, and Filter Schemes for WEKA Implemented in Python . . . . . . . . . e33 Nathan Bryant and Jeremy Wildfire \pkgWebcharts --- A Web-based Charting Library for Custom Interactive Data Visualization . . . . . . . . . . . . . e29 Michael Crusoe and C. Brown Channeling Community Contributions to Scientific Software: A Sprint Experience e27 Michael Crusoe and C. Brown Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab . . . . . . . . . . . . . . . . . . e44 Adrian Daerr and Adrien Mogne \pkgPendent\_Drop: An ImageJ Plugin to Measure the Surface Tension from an Image of a Pendent Drop . . . . . . . . e3 Andrew Dawson \pkgeofs: A Library for EOF Analysis of Meteorological, Oceanographic, and Climate Data . . . . . . . . . . . . . . e14 Andrew Dawson \pkgWindspharm: A High-Level Library for Global Wind Field Computations Using Spherical Harmonics . . . . . . . . . . e31 Josselin Defrance and Caroline Lema\^\itre and Rabih Ajib and Jessica Benedicto and Emilien Mallet and Rémi Poll\`es and Jean-Pierre Plumey and Martine Mihailovic and Emmanuel Centeno and Cristian Cirac\`\i and David Smith and Antoine Moreau \pkgMoosh: A Numerical Swiss Army Knife for the Optics of Multilayers in Octave/Matlab . . . . . . . . . . . . . e13 Andrés Demski and Mariano Llamedo Soria \pkgecg-kit: a Matlab Toolbox for Cardiovascular Signal Processing . . . . e8 Nuno Fachada and Vitor Lopes and Rui Martins and Agostinho Rosa PerfAndPubTools --- Tools for Software Performance Analysis and Publishing of Results . . . . . . . . . . . . . . . . e18 Nuno Fachada and Vitor Lopes and Rui Martins and Agostinho Rosa SimOutUtils --- Utilities for Analyzing Time Series Simulation Output . . . . . e38 Damien Farrell \pkgDataExplore: An Application for General Data Analysis in Research and Education . . . . . . . . . . . . . . . e9 Daniel P. Foose and Ioana E. P. Sizemore \pkgVespucci: A Free, Cross-Platform Tool for Spectroscopic Data Analysis and Imaging . . . . . . . . . . . . . . . . e4 James Gebbie-Rayet and Gareth Shannon and Hannes H. Loeffler and Charles A. Laughton \pkgLongbow: A Lightweight Remote Job Submission Tool . . . . . . . . . . . . e1 Henrich Glaser-Opitz and Kristína Budajová \pkgMATH: A Scientific Tool for Numerical Methods Calculation and Visualization . . . . . . . . . . . . . e6 Paul Govan \pkgeAnalytics: Dynamic Web-based Analytics for the Energy Industry . . . e45 Mads Hansen \pkgPyVDT: A PsychoPy-Based Visual Sequence Detection Task . . . . . . . . e22 Jonathan Helmus and Scott Collis The Python ARM Radar Toolkit (\pkgPy-ART), a Library for Working with Weather Radar Data in the Python Programming Language . . . . . . . . . . e25 Brett Hewitt and Moi Hoon Yap and Robyn Grant Manual Whisker Annotator (MWA): A Modular Open-Source Tool . . . . . . . . e16 Shuai Huang and Yaqiang Wang and Yuanli Xie and Peng Zhao and Johannes Lüers \pkgOutlierFlag: A Tool for Scientific Data Quality Control by Outlier Data Flagging . . . . . . . . . . . . . . . . e20 Sebastian Illing and Christopher Kadow and Oliver Kunst and Ulrich Cubasch Correction: \pkgMurCSS: A Tool for Standardized Evaluation of Decadal Hindcast Systems . . . . . . . . . . . . e24 Daniel S. Katz and Sou-Cheng T. Choi and Nancy Wilkins-Diehr and Neil Chue Hong and Colin C. Venters and James Howison and Frank Seinstra and Matthew Jones and Karen A. Cranston and Thomas L. Clune and Miguel de Val-Borro and Richard Littauer Report on the Second Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2) . . . e7 Daniel Katz and Sou-Cheng Choi and Kyle Niemeyer and James Hetherington and Frank Löffler and Dan Gunter and Ray Idaszak and Steven Brandt and Mark Miller and Sandra Gessing and Nick Jones and Nic Weber and Suresh Marru and Gabrielle Allen and Birgit Penzenstadler and Colin Venters and Ethan Davis and Lorraine Hwang and Ilian Todorov and Abani Patra and Miguel de Val-Borro Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3) . . . e37 Jared Kibele Benthic Photo Survey: Software for Geotagging, Depth-tagging, and Classifying Photos from Survey Data and Producing Shapefiles for Habitat Mapping in GIS . . . . . . . . . . . . . . . . . e10 Vincent Knight and Owen Campbell and Marc Harper and Karol Langner and James Campbell and Thomas Campbell and Alex Carney and Martin Chorley and Cameron Davidson-Pilon and Kristian Glass and Nikoleta Glynatsi and Tomás Ehrlich and Martin Jones and Georgios Koutsovoulos and Holly Tibble and Jochen Müller and Geraint Palmer and Piotr Petunov and Paul Slavin and Timothy Standen and Luis Visintini and Karl Molden An Open Framework for the Reproducible Study of the Iterated Prisoner's Dilemma e35 Anton Korosov and Morten Hansen and Knut-Frode Dagestad and Asuka Yamakawa and Aleksander Vines and Maik Riechert \pkgNansat: a Scientist-Orientated Python Package for Geospatial Data Processing . . . . . . . . . . . . . . . e39 Nir Krakauer \pkgSeFo: A Package for Generating Probabilistic Forecasts from NMME Predictive Ensembles . . . . . . . . . . e19 Alastair Lansley and Peter Vamplew and Philip Smith and Cameron Foale \pkgCaliko: An Inverse Kinematics Software Library Implementation of the FABRIK Algorithm . . . . . . . . . . . . e36 Bryan Lougheed and Stephen Obrochta \pkgMatCal: Open Source Bayesian $^{14}$C Age Calibration in Matlab . . . e42 Thor Markussen \pkgParchar --- Characterization of Suspended Particles Through Image Processing in Matlab . . . . . . . . . . e26 Yosef Meller and Alex Liberzon Particle Data Management Software for $3$D Particle Tracking Velocimetry and Related Applications --- The \pkgFlowtracks Package . . . . . . . . . e23 Joris Meurs Flow Rates in Liquid Chromatography, Gas Chromatography and Supercritical Fluid Chromatography: A Tool for Optimization e32 Birgit Möller and Markus Glaß and Danny Misiak and Stefan Posch MiToBo --- A Toolbox for Image Processing and Analysis . . . . . . . . e17 Akio Onogi and Hiroyoshi Iwata \pkgVIGoR: Variational Bayesian Inference for Genome-Wide Regression . . e11 Matti Pastell CowLog --- Cross-Platform Application for Coding Behaviours from Video . . . . e15 Fabio Pavesi and Anna Basoni and Cristiano Fugazza and Stefano Menegon and Alessandro Oggioni and Monica Pepe and Paolo Tagliolato and Paola Carrara EDI --- A Template-Driven Metadata Editor for Research Data . . . . . . . . e40 Philip Rinn and Pedro Lind and Matthias Wächter and Joachim Peinke The Langevin Approach: An R Package for Modeling Markov Processes . . . . . . . e34 Abel Soares Siqueira and Raniere Costa da Silva and Luiz-Rafael Santos \pkgPerprof-py: A Python Package for Performance Profile of Mathematical Optimization Software . . . . . . . . . e12 Andy Stock Open Source Software for Mapping Human Impacts on Marine Ecosystems with an Additive Model . . . . . . . . . . . . . e21 Maarten van Gompel and Antal van den Bosch Efficient $n$-gram, Skipgram and Flexgram Modelling with \pkgColibri Core e30 Mark Vousden and Marc-Antonio Bisotti and Maximilian Albert and Hans Fangohr Virtual Micromagnetics: A Framework for Accessible and Reproducible Micromagnetic Simulation . . . . . . . . e41 Bas Wijnen and Gerald C. Anzalone and Amberlee S. Haselhuhn and P. G. Sanders and Joshua M. Pearce Free and Open-source Control Software for $3$-D Motion and Processing . . . . e2 Hang Xiong and Pin Xiong and Hui Xiong \pkgKAMG: A Tool for Converting Blood Ties and Affinity Ties into Adjacency Matrices . . . . . . . . . . . . . . . . e28 Fabian Zeitvogel and Martin Obst \pkgScatterJn: An ImageJ Plugin for Scatterplot-Matrix Analysis and Classification of Spatially Resolved Analytical Microscopy Data . . . . . . . e5
Richard Otis and Zi-Kui Liu \pkgpycalphad: CALPHAD-based Computational Thermodynamics in Python 1 Mark Heckmann and Lukas Burk \pkgGridsampler --- A Simulation Tool to Determine the Required Sample Size for Repertory Grid Studies . . . . . . . . . 2 Pierre de Buyl and Mu-Jie Huang and Laurens Deprez \pkgRMPCDMD: Simulations of Colloids with Coarse-grained Hydrodynamics, Chemical Reactions and External Fields 3 Natalie Baddour and Ugo Chouinard Matlab Code for the Discrete Hankel Transform . . . . . . . . . . . . . . . 4 Willem Eerland and Simon Box and András Sóbester Cambridge Rocketry Simulator --- A Stochastic Six-Degrees-of-Freedom Rocket Flight Simulator . . . . . . . . . . . . 5 Yves Bas and Didier Bas and Jean-François Julien \pkgTadarida: A Toolbox for Animal Detection on Acoustic Recordings . . . . 6 Stefan Posch and Birgit Moeller \pkgAlida --- Advanced Library for Integrated Development of Data Analysis Applications . . . . . . . . . . . . . . 7 Scott A. Sarra The Matlab Radial Basis Function Toolbox 8 François Nedelec \pkgpreconfig: A Versatile Configuration File Generator for Varying Parameters 9 Stephan Hoyer and Joe Hamman \pkgxarray: $N$-$D$ labeled Arrays and Datasets in Python . . . . . . . . . . . 10 Qingzhao Yu and Bin Li \pkgmma: An R Package for Mediation Analysis with Multiple Mediators . . . . 11 Robert Dahl Jacobsen and Morten Nielsen and Morten Grud Rasmussen Generalized Sampling in Julia . . . . . 12 Michail Alvanos and Theodoros Christoudias \pkgMEDINA: MECCA Development in Accelerators --- KPP Fortran to CUDA source-to-source Pre-processor . . . . . 13 Willem Eerland and Simon Box and Hans Fangohr and András Sóbester \pkgTeetool --- a probabilistic trajectory analysis tool . . . . . . . . 14 Christopher Rackauckas and Qing Nie \pkgDifferentialEquations.jl --- A Performant and Feature-Rich Ecosystem for Solving Differential Equations in Julia . . . . . . . . . . . . . . . . . 15 Micha\l Ptaszy\'nski and Pawe\l Dybala and Rafa\l Rzepka and Kenji Araki and Fumito Masui \pkgML-Ask: Open Source Affect Analysis Software for Textual Input in Japanese 16 Alexandra K. Diem and Neil W. Bressloff \pkgVaMpy: A Python Package to Solve $1$D Blood Flow Problems . . . . . . . . 17 Martin C. Roberge and Michael P. McGuire and Jie Lian \pkgHydroCloud: A Web Application for Exploring Stream Gage Data . . . . . . . 18 Mohammad N. Elnesr and A. A. Alazba \pkgNeuroCharter: A Neural Networks Software to Visually Discover the Effects and Contributions between Interrelated Features . . . . . . . . . 19 Foo Cheung and Giovanna Fantoni and Maria Conner and Brian A. Sellers and Yuri Kotliarov and Julián Candia and Katherine Stagliano and Angélique Biancotto Web Tool for Navigating and Plotting SomaLogic ADAT Files . . . . . . . . . . 20 Xinya Li and Chris R. Vernon and Mohamad I. Hejazi and Robert P. Link and Leyang Feng and Yaling Liu and Lynn T. Rauchenstein \pkgXanthos --- A Global Hydrologic Model . . . . . . . . . . . . . . . . . 21 Ryan Henderson and Rasmus Rothe \pkgPicasso: A Modular Framework for Visualizing the Learning Process of Neural Network Image Classifiers . . . . 22 Daniel A. Wagenaar \pkgVScope --- Data Acquisition and Analysis for Voltage-sensitive Dye Imaging Using Multiple Cameras and Electrophysiology . . . . . . . . . . . 23 Matthew S. Gillman \pkgGENESIS --- The GENEric SImulation System for Modelling State Transitions 24 Gray Kimbrough \pkgATUS-Commuting: Stata Code to Calculate Commuting Time in the American Time Use Survey . . . . . . . . . . . . 25 Julia Damerow and B. R. Erick Peirson and Manfred D. Laubichler The Giles Ecosystem --- Storage, Text Extraction, and OCR of Documents . . . . 26 Dzhoshkun Ismail Shakir and Luis Carlos García-Peraza-Herrera and Pankaj Daga and Tom Doel and Matthew J. Clarkson and Sébastien Ourselin and Tom Vercauteren \pkgGIFT-Grab: Real-time C++ and Python multi-channel video capture, processing and encoding API . . . . . . . . . . . . 27 Tom Lawton DSCImageCalc --- Software for Determining Similarity Coefficients for the Analysis of Image Segmentations . . 28 Tianshu Liu \pkgOpenOpticalFlow: An Open Source Program for Extraction of Velocity Fields from Flow Visualization Images 29 Luis Pedro Coelho \pkgJug: Software for Parallel Reproducible Computation in Python . . . 30 Aidan O'Mara and Anna E. King and James C. Vickers and Matthew T. K. Kirkcaldie \pkgImageSURF: An ImageJ Plugin for Batch Pixel-Based Image Segmentation Using Random Forests . . . . . . . . . . 31 Tom Crick and Benjamin Hall and Samin Ishtiaq Reproducibility in Research: Systems, Infrastructure, Culture . . . . . . . . 32 Inga Schwabe \pkgBayesTwin: An R Package for Bayesian Inference of Item-Level Twin Data . . . 33
Xavier Barbeau and Antony T. Vincent and Patrick Lagüe \pkgConfBuster: Open-Source Tools for Macrocycle Conformational Search and Analysis . . . . . . . . . . . . . . . . 1 Pablo Saavedra and Clemens Simmer An Octave/MATLAB\reg Interface for Rapid Processing of SMOS L1C Full Polarization Brightness Temperature . . . . . . . . . 2 Roger Fenn and Ansgar Wenzel Quandle and Biquandle Homology Calculation in R . . . . . . . . . . . . 3 Thomas Brown and Jonas Hörsch and David Schlachtberger \pkgPyPSA: Python for Power System Analysis . . . . . . . . . . . . . . . . 4 William Griffin \pkgpyObs: Open-Source Software for Computer-Assisted Behavioral Observation Coding . . . . . . . . . . . . . . . . . 5 Sivananda Rajananda and Hakwan Lau and Brian Odegaard A Random-Dot Kinematogram for Web-Based Vision Research . . . . . . . . . . . . 6 Maxwell Grady and Zhongwei Dai and Karsten Pohl \pkgPLEASE: The Python Low-energy Electron Analysis SuitE --- Enabling Rapid Analysis of LEEM and LEED Data . . 7 Michael Schoeffler and Sarah Bartoschek and Fabian-Robert Stöter and Marlene Roess and Susanne Westphal and Bernd Edler and Jürgen Herre webMUSHRA --- A Comprehensive Framework for Web-based Listening Tests . . . . . 8 Xinya Li and Chris R. Vernon and Mohamad I. Hejazi and Robert P. Link and Zhongwei Huang and Lu Liu and Leyang Feng \pkgTethys --- A Python Package for Spatial and Temporal Downscaling of Global Water Withdrawals . . . . . . . . 9 Daniel S. Katz and Kyle E. Niemeyer and Sandra Gesing and Lorraine Hwang and Wolfgang Bangerth and Simon Hettrick and Ray Idaszak and Jean Salac and Neil Chue Hong and Santiago Núñez-Corrales and Alice Allen and R. Stuart Geiger and Jonah Miller and Emily Chen and Anshu Dubey and Patricia Lago Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4) . . . . . . . . . . . . . . . 10 Ulrich Matter \pkgRWebData: A High-Level Interface to the Programmable Web . . . . . . . . . . 11 Daniel Michelson and Anders Henja and Sander Ernes and Günther Haase and Jarmo Koistinen and Katarzyna O'sródka and Tuomas Peltonen and Maciej Szewczykowski and Jan Szturc BALTRAD Advanced Weather Radar Networking . . . . . . . . . . . . . . . 12 Daniel Leightley and Jo-Anne Puddephatt and Laura Goodwin and Roberto Rona and Nicola T. Fear \pkgInDEx: Open Source iOS and Android Software for Self-Reporting and Monitoring of Alcohol Consumption . . . 13 Nina Heck and Moritz Schubotz DiViDu --- An Open Source Solution for Dual Task Experiments with Integrated Divided Visual Field Paradigm . . . . . 14 Chris R. Vernon and Yannick Le Page and Min Chen and Maoyi Huang and Katherine V. Calvin and Ian P. Kraucunas and Caleb J. Braun \pkgDemeter --- A Land Use and Land Cover Change Disaggregation Model . . . 15 Pete Richard Jones \pkgMyex: A MATLAB Interface for the Tobii Eyex Eye-Tracker . . . . . . . . . 16 Jonathan Petticrew and Simon Dimler and Jo Shien Ng Simple Monte Carlo Simulator for Modelling Linear Mode and Geiger Mode Avalanche Photodiodes in C++ . . . . . . 17 Helga Tauscher \pkgBillie. A Prototypical Framework for Building Information Model Visualization 18 Henrik Nygård and Ciarán Murray and Jesper H. Andersen and Georg Martin and Kaire Torn and Samuli Korpinen \pkgBEAT 3.0 --- a Tool for Integrated Biodiversity Assessments . . . . . . . . 19 Chris R. Vernon and Nino Zuljevic and Jennie S. Rice and Timothy E. Seiple and Michael C. W. Kintner-Meyer and Nathalie Voisin and Ian P. Kraucunas and Jin Chunlian and Jarrod Olson and Laurel Schmidt and Scott L. Morris and Pralit Patel \pkgCERF --- A Geospatial Model for Assessing Future Energy Production Technology Expansion Feasibility . . . . 20 Rubens Flam-Shepherd and Dev T. Britto and Herbert J. Kronzucker \pkgvaCATE: A Platform for Automating Data Output from Compartmental Analysis by Tracer Efflux . . . . . . . . . . . . 21 Marc-Antonio Bisotti and David Cortés-Ortuño and Ryan Pepper and Weiwei Wang and Marijan Beg and Thomas Kluyver and Hans Fangohr \pkgFidimag --- A Finite Difference Atomistic and Micromagnetic Simulation Package . . . . . . . . . . . . . . . . 22
Chris R. Vernon and Mohamad I. Hejazi and Sean W. D. Turner and Yaling Liu and Caleb J. Braun and Xinya Li and Robert P. Link A Global Hydrologic Framework to Accelerate Scientific Discovery . . . . 1 Michael Slugocki and Allison B. Sekuler and Patrick Bennett \pkgBayesFit: a tool for modeling psychophysical data using Bayesian inference . . . . . . . . . . . . . . . 2 Edward D. Lee and Bryan C. Daniels Convenient Interface to Inverse Ising (ConIII): a Python 3 Package for Solving Ising-Type Maximum Entropy Models . . . 3 Christine Harvey and R. S. Weigel \pkgTransplant2Mongo: Python Scripts that Insert Organ Procurement and Transplantation Network (OPTN) Data in MongoDB . . . . . . . . . . . . . . . . 5 Ben Bond-Lamberty and Kalyn Dorheim and Ryna Cui and Russell Horowitz and Abigail Snyder and Katherine Calvin and Leyang Feng and Rachel Hoesly and Jill Horing and G. Page Kyle and Robert Link and Pralit Patel and Christopher Roney and Aaron Staniszewski and Sean Turner and Min Chen and Felip Feijoo and Corinne Hartin and Mohamad Hejazi and Gokul Iyer and Sonny Kim and Yaling Liu and Cary Lynch and Haewon McJeon and Steven Smith and Stephanie Waldhoff and Marshall Wise and Leon Clarke \geonamegcamdata: an R Package for Preparation, Synthesis, and Tracking of Input Data for the GCAM Integrated Human--Earth Systems Model . . . . . . . 6 Kristoffer Carlsson and Fredrik Ekre \pkgTensors.jl --- Tensor Computations in Julia . . . . . . . . . . . . . . . . 7 Sean A. Fulop and Hannah Scott Vowel System Sandbox: Complex System Modelling of Language Change . . . . . . 8 Pierre Augier and Ashwin Vishnu Mohanan and Cyrille Bonamy \pkgFluidDyn: a Python Open-Source Framework for Research and Teaching in Fluid Dynamics by Simulations, Experiments and Data Processing . . . . 9 Ashwin Vishnu Mohanan and Cyrille Bonamy and Pierre Augier \pkgFluidFFT: Common API (C++ and Python) for Fast Fourier Transform HPC Libraries . . . . . . . . . . . . . . . 10 Paul Walker and Ulrich Krohn and David Carty \pkgARBTools: a Tricubic Spline Interpolator for Three-Dimensional Scalar or Vector Fields . . . . . . . . 12 Zhangqi Chen and Qiaofu Zhang and Ji-Cheng Zhao \pkgpydiffusion: a Python Library for Diffusion Simulation and Data Analysis 13 Ashwin Vishnu Mohanan and Cyrille Bonamy and Miguel Calpe Linares and Pierre Augier \pkgFluidSim: Modular, Object-Oriented Python Package for High-Performance CFD Simulations . . . . . . . . . . . . . . 14 Paul F. Petrowski and Elizabeth G. King and Timothy M. Beissinger An R Framework for the Partitioning of Linkage Disequilibrium between and Within Populations . . . . . . . . . . . 15 Will Usher and Tom Russell A Software Framework for the Integration of Infrastructure Simulation Models . . 16 Heidi Seibold and Achim Zeileis and Torsten Hothorn \pkgmodel4you: an R Package for Personalised Treatment Effect Estimation 17 Hagen Radtke and Florian Börgel and Sandra-Esther Brunnabend and Anja Eggert and Madline Kniebusch and H. E. Markus Meier and Daniel Neumann and Thomas Neumann and Manja Placke \pkgValidator --- a Web-Based Interactive Tool for Validation of Ocean Models at Oceanographic Stations . . . . 18 Markus Quade and Julien Gout and Markus Abel \pkgGlyph: Symbolic Regression Tools . . 19 Johannes Brenner and Guilio Genova and Giacomo Bertoldi and Georg Niedrist and Stefano Della Chiesa \pkgSWCalibrateR: Interactive, Web-Based Calibration of Soil Moisture Sensors . . 20 Y. Q. Wang An Open Source Software Suite for Multi-Dimensional Meteorological Data Computation and Visualisation . . . . . 21 Thomas B. Wild and Daniel P. Loucks and George W. Annandale \pkgSedSim: a River Basin Simulation Screening Model for Reservoir Management of Sediment, Water, and Hydropower . . . 22 Michael Clerx and Martin Robinson and Ben Lambert and Chon Lok Lei and Sanmitra Ghosh and Gary R. Mirams and David J. Gavaghan Probabilistic Inference on Noisy Time Series (PINTS) . . . . . . . . . . . . . 23 Abdelrahman Abouali and Domingos Xavier Viegas \pkgFire ROS Calculator: a Tool to Measure the Rate of Spread of a Propagating Wildfire in a Laboratory Setting . . . . . . . . . . . . . . . . 24 Julian Stieg and Peter Marks and Lasse Gerrits \pkgUN-CODE: Software for Structuring and Visualizing Collective Decision-Making Based on Qualitative Data . . . . . . . . . . . . . . . . . . 25 Ewout van den Berg The Ocean Tensor Package . . . . . . . . 26 Jose Luis García del Castillo y López \pkgMachina.NET: a Library for Programming and Real-Time Control of Industrial Robots . . . . . . . . . . . 27 James F. Varner and Noor Eldabagh and Derek Volta and Reem Eldabagh and Jonathan J. Foley IV \pkgWPTherml: a Python Package for the Design of Materials for Harnessing Heat 28 Daniel Wheeler and Trevor Keller and Stephen J. DeWitt and Andrea M. Jokisaari and Daniel Schwen and Jonathan E. Guyer and Larry K. Aagesen and Olle G. Heinonen and Michael R. Tonks and Peter W. Voorhees and James A. Warren \pkgPFHub: The Phase-Field Community Hub 29 Luuk Van Waes and Mariëlle Leijten and Tom Pauwaert and Eric Van Horenbeeck A Multilingual Copy Task: Measuring Typing and Motor Skills in Writing with Inputlog . . . . . . . . . . . . . . . . 30 Katherine Calvin and Robert Link and Marshall Wise \pkggcamland v1.0 --- an R Package for Modelling Land Use and Land Cover Change 31 Paul van Gent and Haneen Farah and Nicole van Nes and Bart van Arem Analysing Noisy Driver Physiology Real-Time Using Off-the-Shelf Sensors: Heart Rate Analysis Software from the Taking the Fast Lane Project . . . . . . 32 Lyndon White and Roberto Togneri and Wei Liu and Mohammed Bennamoun \pkgDataDeps.jl: Repeatable Data Setup for Reproducible Data Science . . . . . 33 Iain Emsley and Torò Graven and Nicola Bird and Susan Griffiths and Jessica Suess and Lucy Shaw Please Touch the Art: Experiences in Developing for the Visually Impaired . . 4 Daniel S. Katz and Stephan Druskat and Robert Haines and Caroline Jay and Alexander Struck The State of Sustainable Research Software: Learning from the Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE5.1) . . 11
Alan V. Di Vittorio and Chris R. Vernon and Shijie Shu \pkgMoirai Version 3: a Data Processing System to Generate Recent Historical Land Inputs for Global Modeling Applications at Various Scales . . . . . 1 Tobias Stål and Anya M. Reading A Grid for Multidimensional and Multivariate Spatial Representation and Data Processing . . . . . . . . . . . . 2 V. Gonzalez-Perez and P. Keil and Y. Li and A. Zülke and R. Burrel and D. Csala and H. Hoster A Python Package to Preprocess the Data Produced by Novonix High-Precision Battery-Testers . . . . . . . . . . . . 3 Alexander Raß High Precision Particle Swarm Optimization Algorithm (HiPPSO) . . . . 4 A. F. M. Kamal Chowdhury and Jordan Kern and Thanh Duc Dang and Stefano Galelli \pkgPowNet: a Network-Constrained Unit Commitment/Economic Dispatch Model for Large-Scale Power Systems Analysis . . . 5 Foo Cheung and The CHI Consortium A Figure One Web Tool for Visualization of Experimental Designs . . . . . . . . 6 Hari Nandakumar and Shailesh Srivastava \pkgABC-OCT --- a Cross-Platform Implementation of Real-Time Fourier-Domain Optical Coherence Tomography . . . . . . . . . . . . . . . 7 Stephen Thompson and Thomas Dowrick and Goufang Xiao and João Ramalhinho and Maria Robu and Mian Ahmad and Dan Taylor and Matthew J. Clarkson \pkgSnappySonic: an Ultrasound Acquisition Replay Simulator . . . . . . 8 Kashif Shaad and Howard Alt An Open Source Toolbox for Integrating Freshwater Social-Ecological Indicators in Basin Management . . . . . . . . . . 9 Zarrar Khan and Thomas Wild and Chris Vernon and Andy Miller and Mohamad Hejazi and Leon Clarke and Fernando Miralles-Wilhelm and Raul Munoz Castillo and Fekadu Moreda and Julia Lacal Bereslawski and Micaela Suriano and Jose Casado \pkgMetis --- a Tool to Harmonize and Analyze Multi-Sectoral Data and Linkages at Variable Spatial Scales . . . . . . . 10 Robin A. Richardson and David W. Wright and Wouter Edeling and Vytautas Jancauskas and Jalal Lakhlili and Peter V. Coveney \pkgEasyVVUQ: a Library for Verification, Validation and Uncertainty Quantification in High Performance Computing . . . . . . . . . . . . . . . 11 Antonia Hadjimichael and David Gold and David Hadka and Patrick Reed \pkgRhodium: Python Library for Many-Objective Robust Decision Making and Exploratory Modeling . . . . . . . . 12 Martin Rabe \pkgSpectram: a MATLAB\reg and GNU Octave Toolbox for Transition Model Guided Deconvolution of Dynamic Spectroscopic Data . . . . . . . . . . . 13 Riko Kelter \pkgbayest: an R Package for Effect-Size Targeted Bayesian Two-Sample $t$-Tests 14 K. E. Kaiser and A. N. Flores and C. R. Vernon \pkgJanus: a Python Package for Agent-Based Modeling of Land Use and Land Cover Change . . . . . . . . . . . 15 Jagir R. Hussan and Peter J. Hunter \pkgComfort Simulator: a Software Tool to Model Thermoregulation and Perception of Comfort . . . . . . . . . . . . . . . 16 Gabriele Gentile \pkgCURSAT ver. 2.1: a Simple, Resampling-Based, Program to Generate Pseudoreplicates of Data and Calculate Rarefaction Curves . . . . . . . . . . . 17 Adam Pluta and Ontje Lünsdorf \pkgesy-osmfilter --- a Python Library to Efficiently Extract OpenStreetMap Data . . . . . . . . . . . . . . . . . . 19 Robert Jackson and Scott Collis and Timothy Lang and Corey Potvin and Todd Munson \pkgPyDDA: a Pythonic Direct Data Assimilation Framework for Wind Retrievals . . . . . . . . . . . . . . . 20 Marc Lavielle and Philip D. Waggoner Exploring and Comparing Unsupervised Clustering Algorithms . . . . . . . . . 21 Paige Fisher and Wentao Cao and Qingzhao Yu Using SAS Macros for Multiple Mediation Analysis in R . . . . . . . . . . . . . 22 Brendan Williams and Michael Lindner \pkgpyfMRIqc: a Software Package for Raw fMRI Data Quality Assurance . . . . . . 23 Ulrike Grömping \pkgDoE.MIParray: an R Package for Algorithmic Creation of Orthogonal Arrays . . . . . . . . . . . . . . . . . 24 Corey Schimpf and Brian Castellani \pkgCOMPLEX-IT: a Case-Based Modelling and Scenario Simulation Platform for Social Inquiry . . . . . . . . . . . . . 25 Vladyslav Oles and Anton Kukushkin \pkgBoolSi: a Tool for Distributed Simulations and Analysis of Boolean Networks . . . . . . . . . . . . . . . . 26 Thomas Dowrick and James Avery and Mayo Faulkner and David Holder and Kirill Aristovich \pkgEIT-MESHER --- Segmented FEM Mesh Generation and Refinement . . . . . . . 27 Jordi Figueras i Ventura and Martin Lainer and Zaira Schauwecker and Jacopo Grazioli and Urs Germann \pkgPyrad: a Real-Time Weather Radar Data Processing Framework Based on Py-ART . . . . . . . . . . . . . . . . . 28 Lisa Sahlmann and Christian B. Mendl \pkgGuiTeNet: a Graphical User Interface for Tensor Networks . . . . . . . . . . 29 Drew Paine and Devarshi Ghoshal and Lavanya Ramakrishnan Experiences with a Flexible User Research Process to Build Data Change Tools . . . . . . . . . . . . . . . . . 18
Hyemin Han \pkgBayesFactorFMRI: Implementing Bayesian Second-Level fMRI Analysis with Multiple Comparison Correction and Bayesian Meta-Analysis of fMRI Images with Multiprocessing . . . . . . . . . . 1 Isabelle Mirouze and Sophie Ricci Smurf: System for Modelling with Uncertainty Reduction, and Forecasting 2 Tianshu Liu and David M. Salazar \pkgOpenOpticalFlow\_PIV: an Open Source Program Integrating Optical Flow Method with Cross- Correlation Method for Particle Image Velocimetry . . . . . . . 3 Ian Edhlund and Matthew Macauley and Cindy Lee \pkgPBTK Optimizer: an Open Source Application for PBTK Model Parameter Optimization in Python . . . . . . . . . 4 Philippe Apparicio and David Maignan and Jérémy Gelb \pkgVIFECO: an Open-Source Software for Counting Features on a Video . . . . . . 7 Konstantin Stadler \pkgPymrio --- a Python Based Multi-Regional Input-Output Analysis Toolbox . . . . . . . . . . . . . . . . 8 Christoph G. Hoffmann and George N. Kiladis and Maria Gehne and Christian von Savigny A Python Package to Calculate the OLR-Based Index of the Madden--Julian-Oscillation (OMI) in Climate Science and Weather Forecasting 9 Eugenio Piasini and Alexandre L. S. Filipowicz and Jonathan Levine and Joshua I. Gold \pkgEmbo: a Python package for empirical data analysis using the Information Bottleneck . . . . . . . . . . . . . . . 10 Florian Riefstahl and Felix Gross \pkgFastGAPP --- a MATLAB Based Program Supports Earth Scientists Interpreting Geochemical, Petrological and Sedimentological Data . . . . . . . . . 11 William Thielicke and René Sonntag Particle Image Velocimetry for MATLAB: Accuracy and enhanced algorithms in PIVlab . . . . . . . . . . . . . . . . . 12 Christopher Kadow and Sebastian Illing and Etor E. Lucio-Eceiza and Martin Bergemann and Mahesh Ramadoss and Philipp S. Sommer and Oliver Kunst and Thomas Schartner and Klaus Pankatz and Jens Grieger and Mareike Schuster and Andy Richling and Hannes Thiemann and Ingo Kirchner and Henning W Rust and Thomas Ludwig and Ulrich Cubasch and Uwe Ulbrich Introduction to \pkgFreva --- a Free Evaluation System Framework for Earth System Modeling . . . . . . . . . . . . 13 Valentin Sulzer and Scott G. Marquis and Robert Timms and Martin Robinson and S. Jon Chapman \pkgPython Battery Mathematical Modelling (PyBaMM) . . . . . . . . . . . 14 Tiger Cross and Rasika Navarange and Joon-Ho Son and William Burr and Arjun Singh and Kelvin Zhang and Miruna Rusu and Konstantinos Gkoutzis and Andrew Osborne and Bart Nieuwenhuis \pkgSimple RGC: ImageJ Plugins for Counting Retinal Ganglion Cells and Determining the Transduction Efficiency of Viral Vectors in Retinal Wholemounts 15 Christos Kotsalos and Jonas Latt and Bastien Chopard \pkgPalabos-npFEM: Software for the Simulation of Cellular Blood Flow (Digital Blood) . . . . . . . . . . . . 16 Thomas Dowrick and Mian Ahmad and Stephen Thompson and James Hetherington and Jonathan Cooper and Matt Clarkson \pkgCMakeCatchTemplate: a C++ template project . . . . . . . . . . . . . . . . 17 Aruna Jayasena Register Transfer Level Disparity generator with Stereo Vision . . . . . . 18 Brandon P. M. Edwards and Adam C. Smith \pkgbbsBayes: an R Package for Hierarchical Bayesian Analysis of North American Breeding Bird Survey Data . . . 19 Dan Barry and Qijian Zhang and Pheobe Wenyi Sun and Andrew Hines \pkgGo Listen: an End-to-End Online Listening Test Platform . . . . . . . . 20 Gáspár Lukács \pkgSmaRT-CIT: Smartphone App for the Response Time Concealed Information Test with Ready-to-Use Android Deployment . . 21 Rune Barnkob and Massimiliano Rossi \pkgDefocusTracker: a Modular Toolbox for Defocusing-based, Single-Camera, 3D Particle Tracking . . . . . . . . . . . 22 Tulio Molina and Juan Ortega and Juan Muñoz \pkgHELMpy, Open Source Package of Power Flow Solvers, Including the Holomorphic Embedding Load Flow Method (HELM), Developed on Python 3 . . . . . . . . . 23 Adrian Moore \pkgautoAPI --- a Web-Based Tool for Specification of an API Endpoint to Return JSON Data From an XML Source . . 24 Ales Jelinek and Adam Ligocki and Ludek Zalud Robotic Template Library . . . . . . . . 25 Angela Herring and Charles Ferenbaugh and Christopher Malone and Daniel Shevitz and Evgeny Kikinzon and Gary Dilts and Hoby Rakotoarivelo and Jan Velechovsky and Konstantin Lipnikov and Navamita Ray and Rao Garimella \pkgPortage: a Modular Data Remap Library for Multiphysics Applications on Advanced Architectures . . . . . . . . . 26 Saras M. Windecker and Peter A. Vesk and Stacey M. Trevathan-Tackett and Nick Golding \pkgmixchar: an R Package for the Deconvolution of Thermal Decay Curves 27 Robin Champseix and Laurent Ribiere and Clément Le Couedic A Python Package for Heart Rate Variability Analysis and Signal Preprocessing . . . . . . . . . . . . . 28 Ross J. Turner and Rebecca B. Latto and Anya M. Reading An ObsPy Library for Event Detection and Seismic Attribute Calculation: Preparing Waveforms for Automated Analysis . . . . 29 Jacques Muthusi and Peter W. Young and Samuel Mwalili \pkg%svy\_freqs: a Generic SAS Macro for Creating Publication-Quality Three-Way Cross-Tabulations . . . . . . . . . . . 30 Claudio S. Ravasio and Lyndon Da Cruz and Christos Bergeles \pkgoflibnumpy and \pkgoflibpytorch: Optical Flow Handling and Manipulation in Python . . . . . . . . . . . . . . . 31 Diogo Ferrari \pkgCESER: an R Package to Compute Cluster Estimated Standard Errors . . . 32 Maarten Plieger and Ernst de Vreede \pkgAdaguc-Server: Interactive Access to Heterogeneous Meteorological and Climatological Datasets Using Open Standards . . . . . . . . . . . . . . . 33 James R. Schmidt \pkgCSVDataMerge: a Simple and Free Program for Concatenating Experimental Data Files . . . . . . . . . . . . . . . 34 M. Bekker-Nielsen Dunbar and Thomas J. R. Finnie \pkgbayesint: a Python Package for Calculating Bayesian Credible Intervals of Ratios of Beta Distributions . . . . 35 J. Fehr and C. Himpe and S. Rave and J. Saak Sustainable Research Software Hand-Over 5 Simon Hilpert and Stephan Günther and Martin Söthe \pkgoemof.tabular --- Introducing Data Packages for Reproducible Workflows in Energy System Modeling . . . . . . . . . 6
Rémi Cresson \pkgSR4RS: a Tool for Super Resolution of Remote Sensing Images . . . . . . . . ?? Vanessa Sochat and Nicholas May and Ian Cosden and Carlos Martinez-Ortiz and Sadie Bartholomew The Research Software Encyclopedia: a Community Framework to Define Research Software . . . . . . . . . . . . . . . . ?? Johannes N. Hansen \pkgnd --- a Framework for the Analysis of $n$-dimensional Earth Observation Data . . . . . . . . . . . . . . . . . . ?? Thi-Ngoc-Thu Nguyen and Andreas Höfter and Kevin Leonardic and Stefanie Rosenhain and Fabian Kiessling and Wannida Sae-Tang and Uwe Naumann and Felix Gremse A Micro-computed Tomography Database and Reference Implementation for Parallel Computations of Trabecular Thickness and Spacing . . . . . . . . . . . . . . . . ?? Nikolay Petrov and Vasil Atanasov and Trevor Thompson Open-Source MUltiple Tests Corrections and FOrmatted Tables Software (MUFOS) ?? Gabi Wethor and Matthew L. Hale \pkgStudySandboxx: a Tool for Scraping, Sandboxing, Preserving, and Preparing Interactive Web Sites for Use in Human-computer Interaction and Behavioral Studies . . . . . . . . . . . ?? Xin Tong and Sou-Cheng T. Choi and Yuhan Ding and Fred J. Hickernell and Lan Jiang and Lluís Antoni Jiménez Rugama and Jagadeeswaran Rathinavel and Kan Zhang and Yizhi Zhang and Xuan Zhou \pkgGuaranteed Automatic Integration Library (GAIL): an Open-Source MATLAB Library for Function Approximation, Optimization, and Integration . . . . . ?? Nils Rosjat and Silvia Daun \pkgDST (Dynamic Synchronization Toolbox): a MATLAB Implementation of the Dynamic Phase-Locking Pipeline from Stimulus Transformation into Motor Action: Dynamic Graph Analysis Reveals a Posterior-to- Anterior Shift in Brain Network Communication of Older Subjects ?? Brena Lima and Nuno Fachada and Rui Dinis and Daniel B. Costa and Marko Beko \pkgUavnoma: a UAV-NOMA Network Model under Non-Ideal Conditions . . . . . . . ?? Meryem Berrada and Richard A. Secco \pkgRho: Application to Analyze Electrical Resistivity . . . . . . . . . ?? Anna-Lena Lamprecht and Carlos Martinez-Ortiz and Michelle Barker and Sadie L. Bartholomew and Justin Barton and Neil Chue Hong and Jeremy Cohen and Stephan Druskat and Jeremy Forest and Jean-Noël Grad and Daniel S. Katz and Robin Richardson and Robert Rosca and Douwe Schulte and Alexander Struck and Marion Weinzierl What Do We (Not) Know About Research Software Engineering? . . . . . . . . . ??
Magnus Hagdorn and Noel Gourmelen \pkgTaskfarm: a Client/Server Framework for Supporting Massive Embarrassingly Parallel Workloads . . . . . . . . . . . ?? Adéla\"\ide Raguin and Ian Stansfield and Maria Carmen Romano \pkgExpressInHost: a Codon Tuning Tool for the Expression of Recombinant Proteins in Host Microorganisms . . . . ?? João Ramalhinho and Thomas Dowrick and Ester Bonmati and Matthew J. Clarkson \pkgFan-Slicer: a Pycuda Package for Fast Reslicing of Ultrasound Shaped Planes . . . . . . . . . . . . . . . . . ?? Md. Manjurul Hussain and Ishtiak Mahmud and Sheikh Hefzul Bari \pkgpyHomogeneity: a Python Package for Homogeneity Test of Time Series Data . . ?? Simon Christ and Daniel Schwabeneder and Christopher Rackauckas and Michael Krabbe Borregaard and Thomas Breloff \pkgPlots.jl --- a User Extendable Plotting API for the Julia Programming Language . . . . . . . . . . . . . . . . ?? Vanessa Sochat and Matthieu Muffato and Audrey Stott and Marco De La Pierre and Georgia Stuart Automated Discovery of Container Executables . . . . . . . . . . . . . . ??