@Preamble{
"\ifx \undefined \booktitle \def \booktitle #1{{{\em #1}}} \fi" #
"\ifx \undefined \circled \def \circled #1{(#1)} \fi" #
"\ifx \undefined \fun \def \fun #1{{{\tt #1}}} \fi" #
"\ifx \undefined \pkg \def \pkg #1{{{\tt #1}}} \fi" #
"\ifx \undefined \reg \def \reg {\circled{R}} \fi" #
"\ifx \undefined \textfrak \def \textfrak #1{$\cal #1$} \fi" #
"\ifx \undefined \textrm \def \textrm #1{{\rm #1}} \fi" #
"\ifx \undefined \url \def \url #1{{\tt #1}} \fi"
}
@String{ack-nhfb = "Nelson H. F. Beebe,
University of Utah,
Department of Mathematics, 110 LCB,
155 S 1400 E RM 233,
Salt Lake City, UT 84112-0090, USA,
Tel: +1 801 581 5254,
FAX: +1 801 581 4148,
e-mail: \path|beebe@math.utah.edu|,
\path|beebe@acm.org|,
\path|beebe@computer.org| (Internet),
URL: \path|http://www.math.utah.edu/~beebe/|"}
@String{j-J-STAT-SOFT = "Journal of Statistical Software"}
@String{j-SIGPLAN = "ACM SIG{\-}PLAN Notices"}
@String{j-TOMACS = "ACM Transactions on Modeling and
Computer Simulation"}
@String{j-TOMS = "ACM Transactions on Mathematical Software"}
@String{pub-ACM = "ACM Press"}
@String{pub-ACM:adr = "New York, NY 10036, USA"}
@String{pub-IEEE = "IEEE Computer Society Press"}
@String{pub-IEEE:adr = "1109 Spring Street, Suite 300, Silver
Spring, MD 20910, USA"}
@Article{Barry:1996:DAF,
author = "Ronald Barry",
title = "A Diagnostic to Assess the Fit of a Variogram Model to
Spatial Data",
journal = j-J-STAT-SOFT,
volume = "1",
number = "1",
pages = "1--11",
month = "????",
year = "1996",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v001.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v01/i01;
http://www.jstatsoft.org/v01/i01/barry.pdf;
http://www.jstatsoft.org/v01/i01/code.txt;
http://www.jstatsoft.org/v01/i01/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Bond:1996:HAX,
author = "Jason Bond and George Michailides",
title = "Homogeneity Analysis in {Xlisp--Stat}",
journal = j-J-STAT-SOFT,
volume = "1",
number = "2",
pages = "??--??",
month = "????",
year = "1996",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v001.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v01/i02;
http://www.jstatsoft.org/v01/i02/code_old.phtml;
http://www.jstatsoft.org/v01/i02/data.phtml;
http://www.jstatsoft.org/v01/i02/PAPER/paper.html;
http://www.jstatsoft.org/v01/i02/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Lumley:1996:XST,
author = "Thomas Lumley",
title = "{XLISP--Stat} Tools for Building Generalised
Estimating Equation Models",
journal = j-J-STAT-SOFT,
volume = "1",
number = "3",
pages = "??--??",
month = "????",
year = "1996",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v001.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v01/i03;
http://www.jstatsoft.org/v01/i03/code/;
http://www.jstatsoft.org/v01/i03/data/;
http://www.jstatsoft.org/v01/i03/paper/geejss/geejss.html;
http://www.jstatsoft.org/v01/i03/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Struyf:1996:COO,
author = "Anja Struyf and Mia Hubert and Peter Rousseeuw",
title = "Clustering in an Object-Oriented Environment",
journal = j-J-STAT-SOFT,
volume = "1",
number = "4",
pages = "1--30",
month = "????",
year = "1996",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v001.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v01/i04;
http://www.jstatsoft.org/v01/i04/code/;
http://www.jstatsoft.org/v01/i04/data/;
http://www.jstatsoft.org/v01/i04/paper/clus.pdf;
http://www.jstatsoft.org/v01/i04/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{deLeeuw:1997:SSS,
author = "Jan de Leeuw",
title = "Server-side Statistics Scripting in {PHP}",
journal = j-J-STAT-SOFT,
volume = "2",
number = "1",
pages = "1--13",
month = "????",
year = "1997",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v002.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v02/i01;
http://www.jstatsoft.org/v02/i01/code/;
http://www.jstatsoft.org/v02/i01/Dstatistics/;
http://www.jstatsoft.org/v02/i01/statistics.pdf;
http://www.jstatsoft.org/v02/i01/statistics.ps;
http://www.jstatsoft.org/v02/i01/statistics/statistics.html;
http://www.jstatsoft.org/v02/i01/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Brown:1997:APL,
author = "Barry W. Brown and James Lovato and Kathy Russell",
title = "The {Asypow S(plus)} Library for Asymptotic Power
Calculations",
journal = j-J-STAT-SOFT,
volume = "2",
number = "2",
pages = "1--21",
month = "????",
year = "1997",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v002.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v02/i02;
http://www.jstatsoft.org/v02/i02/asypow-2.1.tar.Z;
http://www.jstatsoft.org/v02/i02/dist;
http://www.jstatsoft.org/v02/i02/docs/asypow.pdf;
http://www.jstatsoft.org/v02/i02/docs/asypow.ps.gz;
http://www.jstatsoft.org/v02/i02/docs/asypow/;
http://www.jstatsoft.org/v02/i02/docs/cheat.pdf;
http://www.jstatsoft.org/v02/i02/docs/cheat.ps.gz;
http://www.jstatsoft.org/v02/i02/docs/cheat/;
http://www.jstatsoft.org/v02/i02/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{West:1997:SAW,
author = "R. Webster West and R. Todd Ogden",
title = "Statistical Analysis with {Webstat}, {Java} applet for
the {World Wide Web}",
journal = j-J-STAT-SOFT,
volume = "2",
number = "3",
pages = "1--7",
month = "????",
year = "1997",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v002.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v02/i03;
http://www.jstatsoft.org/v02/i03/HTML/;
http://www.jstatsoft.org/v02/i03/updates;
http://www.jstatsoft.org/v02/i03/webstat.pdf;
http://www.jstatsoft.org/v02/i03/webstat.ps",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Peterson:1997:CCP,
author = "Leif E. Peterson",
title = "{COVAR}: Computer Program for Multifactor Relative
Risks and Tests of Hypotheses Using a
Variance-Covariance Matrix from Linear and Log-Linear
Regression",
journal = j-J-STAT-SOFT,
volume = "2",
number = "4",
pages = "1--21",
month = "????",
year = "1997",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v002.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v02/i04;
http://www.jstatsoft.org/v02/i04/covar.pdf;
http://www.jstatsoft.org/v02/i04/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Peterson:1997:PPI,
author = "Leif E. Peterson",
title = "{PIRLS}: {Poisson Iteratively Reweighted Least
Squares} Computer Program for Additive, Multiplicative,
Power, and Non-linear Models",
journal = j-J-STAT-SOFT,
volume = "2",
number = "5",
pages = "1--28",
month = "????",
year = "1997",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v002.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v02/i05;
http://www.jstatsoft.org/v02/i05/code/;
http://www.jstatsoft.org/v02/i05/pirls.pdf;
http://www.jstatsoft.org/v02/i05/pirls.ps.gz;
http://www.jstatsoft.org/v02/i05/pirls/;
http://www.jstatsoft.org/v02/i05/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Cook:1997:CYE,
author = "Dianne Cook",
title = "Calibrate Your Eyes to Recognize High-Dimensional
Shapes from Their Low-Dimensional Projections",
journal = j-J-STAT-SOFT,
volume = "2",
number = "6",
pages = "1--7",
month = "????",
year = "1997",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v002.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v02/i06;
http://www.jstatsoft.org/v02/i06/paper.pdf;
http://www.jstatsoft.org/v02/i06/paper.ps.gz;
http://www.jstatsoft.org/v02/i06/paper/code.html;
http://www.jstatsoft.org/v02/i06/paper/data;
http://www.jstatsoft.org/v02/i06/paper/paper.html;
http://www.jstatsoft.org/v02/i06/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{McLachlan:1997:AFM,
author = "Geoff McLachlan and Angus Ng and Peter Adams and David
McGiffin and Andrew Gailbraith",
title = "An Algorithm for Fitting Mixtures of {Gompertz}
Distributions to Censored Survival Data",
journal = j-J-STAT-SOFT,
volume = "2",
number = "7",
pages = "1--23",
month = "????",
year = "1997",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v002.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v02/i07;
http://www.jstatsoft.org/v02/i07/0010.pdf;
http://www.jstatsoft.org/v02/i07/0010.ps.gz;
http://www.jstatsoft.org/v02/i07/code/;
http://www.jstatsoft.org/v02/i07/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Bond:1997:ICA,
author = "Jason Bond and George Michailides",
title = "Interactive Correspondence Analysis in a Dynamic
Object-Oriented Environment",
journal = j-J-STAT-SOFT,
volume = "2",
number = "8",
pages = "1--30",
month = "????",
year = "1997",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v002.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v02/i08;
http://www.jstatsoft.org/v02/i08/jss.pdf;
http://www.jstatsoft.org/v02/i08/jss.ps.gz;
http://www.jstatsoft.org/v02/i08/texstuff/jss/;
http://www.jstatsoft.org/v02/i08/updates;
http://www.jstatsoft.org/v02/i08/xlisp-anacor.lsp;
http://www.jstatsoft.org/v02/i08/xlisp-anacor.xli",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Bois:1997:MMC,
author = "Fre{\'e}d{\'e}ric Y. Bois and Don R. Maszle",
title = "{MCSim}: a {Monte Carlo} Simulation Program",
journal = j-J-STAT-SOFT,
volume = "2",
number = "9",
pages = "1--60",
month = "????",
year = "1997",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v002.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v02/i09;
http://www.jstatsoft.org/v02/i09/mcsim/doc/mcsim.html;
http://www.jstatsoft.org/v02/i09/mcsim/doc/mcsim.pdf;
http://www.jstatsoft.org/v02/i09/mcsim/doc/mcsim.ps;
http://www.jstatsoft.org/v02/i09/mcsim/sim;
http://www.jstatsoft.org/v02/i09/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Boik:1998:DIB,
author = "Robert J. Boik and James F. Robison-Cox",
title = "Derivatives of the Incomplete Beta Function",
journal = j-J-STAT-SOFT,
volume = "3",
number = "1",
pages = "1--20",
month = "????",
year = "1998",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v003.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v03/i01;
http://www.jstatsoft.org/v03/i01/beta.der.pdf;
http://www.jstatsoft.org/v03/i01/beta.der.ps.gz;
http://www.jstatsoft.org/v03/i01/code/;
http://www.jstatsoft.org/v03/i01/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Lumley:1998:SAX,
author = "Thomas Lumley",
title = "Survival Analysis in {XLISP--Stat}. {A} semiliterate
program",
journal = j-J-STAT-SOFT,
volume = "3",
number = "2",
pages = "1--90",
month = "????",
year = "1998",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v003.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v03/i02;
http://www.jstatsoft.org/v03/i02/code/;
http://www.jstatsoft.org/v03/i02/coxregdoc.pdf;
http://www.jstatsoft.org/v03/i02/coxregdoc.ps.gz;
http://www.jstatsoft.org/v03/i02/survival.tar.gz;
http://www.jstatsoft.org/v03/i02/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "noweb",
}
@Article{Marsaglia:1998:MPM,
author = "George Marsaglia and Wai Wan Tsang",
title = "The {Monty Python} Method for Generating Gamma
Variables",
journal = j-J-STAT-SOFT,
volume = "3",
number = "3",
pages = "1--8",
month = "????",
year = "1998",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v003.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/bibnet/authors/m/marsaglia-george.bib;
http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v03/i03;
http://www.jstatsoft.org/v03/i03/GERMGAM.PDF;
http://www.jstatsoft.org/v03/i03/GERMGAM.PS;
http://www.jstatsoft.org/v03/i03/updates",
abstract = "The Monty Python Method for generating random
variables takes a decreasing density, cuts it into
three pieces, then, using area-preserving
transformations, folds it into a rectangle of area $1$.
A random point $ (x, y)$ from that rectangle is used to
provide a variate from the given density, most of the
time as $x$ itself or a linear function of $x$. The
decreasing density is usually the right half of a
symmetric density.\par
The Monty Python method has provided short and fast
generators for normal, $t$ and von Mises densities,
requiring, on the average, from $ 1.5$ to $ 1.8$
uniform variables. In this article, we apply the method
to non-symmetric densities, particularly the important
gamma densities. We lose some of the speed and
simplicity of the symmetric densities, but still get a
method for variates that is simple and fast enough to
provide beta variates in the form $ \gamma_a =
(\gamma_a + \gamma_b)$. We use an average of less than
$ 1.7$ uniform variates to produce a gamma variate
whenever $ \alpha \geq 1$. Implementation is simpler
and from three to five times as fast as a recent method
reputed to be the best for changing $ \alpha $ s.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Somerville:1998:FPE,
author = "Paul N. Somerville",
title = "A {Fortran 90} Program for Evaluation of Multivariate
Normal and Multivariate $t$ Integrals Over Convex
Regions",
journal = j-J-STAT-SOFT,
volume = "3",
number = "4",
pages = "1--10",
month = "????",
year = "1998",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v003.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v03/i04;
http://www.jstatsoft.org/v03/i04/mvi3.for;
http://www.jstatsoft.org/v03/i04/somerville.pdf;
http://www.jstatsoft.org/v03/i04/somerville.ps;
http://www.jstatsoft.org/v03/i04/updates;
http://www.jstatsoft.org/v03/i04/winmvi3.exe",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Banfield:1999:RWB,
author = "Jeff Banfield",
title = "{Rweb}: {Web}-based Statistical Analysis",
journal = j-J-STAT-SOFT,
volume = "4",
number = "1",
pages = "1--15",
month = "????",
year = "1999",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v004.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v04/i01;
http://www.jstatsoft.org/v04/i01/Rweb.pdf;
http://www.jstatsoft.org/v04/i01/Rweb.ps;
http://www.jstatsoft.org/v04/i01/Rweb.tar.gz;
http://www.jstatsoft.org/v04/i01/Rweb/Rweb.html;
http://www.jstatsoft.org/v04/i01/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{McLachlan:1999:EAF,
author = "Geoff J. McLachlan and David Peel",
title = "The {EMMIX} Algorithm for the Fitting of Normal and
$t$-Components",
journal = j-J-STAT-SOFT,
volume = "4",
number = "2",
pages = "1--14",
month = "????",
year = "1999",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v004.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v04/i02;
http://www.jstatsoft.org/v04/i02/emmix.tar.gz;
http://www.jstatsoft.org/v04/i02/guide.pdf;
http://www.jstatsoft.org/v04/i02/paper.pdf;
http://www.jstatsoft.org/v04/i02/updates;
http://www.maths.uq.edu.au/~gjm/emmix/emmix.html",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Doss:1999:DDC,
author = "Hani J. Doss and Balasubramanian Narasimhan",
title = "Dynamic Display of Changing Posterior in {Bayesian}
Survival Analysis: The Software",
journal = j-J-STAT-SOFT,
volume = "4",
number = "3",
pages = "1--72",
month = "????",
year = "1999",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v004.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v04/i03;
http://www.jstatsoft.org/v04/i03/bsa.pdf;
http://www.jstatsoft.org/v04/i03/bsa.tgz;
http://www.jstatsoft.org/v04/i03/ddg.pdf;
http://www.jstatsoft.org/v04/i03/example/;
http://www.jstatsoft.org/v04/i03/html/bsa.html;
http://www.jstatsoft.org/v04/i03/lisp/;
http://www.jstatsoft.org/v04/i03/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Dunn:1999:GUI,
author = "Peter Dunn",
title = "A Graphical User Interface to Generalized Linear
Models in {MATLAB}",
journal = j-J-STAT-SOFT,
volume = "4",
number = "4",
pages = "1--25",
month = "????",
year = "1999",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v004.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v04/i04;
http://www.jstatsoft.org/v04/i04/guiglm.pdf;
http://www.jstatsoft.org/v04/i04/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Hedeker:1999:MCP,
author = "Donald Hedeker",
title = "{MIXNO}: a computer program for mixed-effects nominal
logistic regression",
journal = j-J-STAT-SOFT,
volume = "4",
number = "5",
pages = "1--92",
month = "????",
year = "1999",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v004.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v04/i05;
http://www.jstatsoft.org/v04/i05/mixno102.exe;
http://www.jstatsoft.org/v04/i05/mixnocm.pdf;
http://www.jstatsoft.org/v04/i05/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Jamshidian:1999:ARR,
author = "Mortaza Jamshidian",
title = "Adaptive Robust Regression by Using a Nonlinear
Regression Program",
journal = j-J-STAT-SOFT,
volume = "4",
number = "6",
pages = "1--25",
month = "????",
year = "1999",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v004.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v04/i06;
http://www.jstatsoft.org/v04/i06/code;
http://www.jstatsoft.org/v04/i06/tdistIIr1.pdf;
http://www.jstatsoft.org/v04/i06/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Ramirez:2000:GD,
author = "Donald E. Ramirez",
title = "The Generalized {$F$} Distribution",
journal = j-J-STAT-SOFT,
volume = "5",
number = "1",
pages = "1--14",
month = "????",
year = "2000",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v005.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v05/i01;
http://www.jstatsoft.org/v05/i01/GENF.f;
http://www.jstatsoft.org/v05/i01/GENF.pdf;
http://www.jstatsoft.org/v05/i01/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Wooff:2000:BLP,
author = "David Wooff and Michael Goldstein",
title = "The {Bayes} Linear Programming Language [{B/D}]",
journal = j-J-STAT-SOFT,
volume = "5",
number = "2",
pages = "1--19",
month = "????",
year = "2000",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v005.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://maths.dur.ac.uk/stats/bd/;
http://www.jstatsoft.org/v05/i02;
http://www.jstatsoft.org/v05/i02/blm1.pdf;
http://www.jstatsoft.org/v05/i02/blm2.pdf;
http://www.jstatsoft.org/v05/i02/blm3.pdf;
http://www.jstatsoft.org/v05/i02/man.pdf;
http://www.jstatsoft.org/v05/i02/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Udina:2000:IIC,
author = "Frederic Udina",
title = "Implementing interactive computing in an
object-oriented environment",
journal = j-J-STAT-SOFT,
volume = "5",
number = "3",
pages = "1--20",
month = "????",
year = "2000",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v005.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v05/i03;
http://www.jstatsoft.org/v05/i03/lisp-code/;
http://www.jstatsoft.org/v05/i03/object-computing.pdf;
http://www.jstatsoft.org/v05/i03/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Firth:2000:QVX,
author = "David Firth",
title = "Quasi-variances in {Xlisp--Stat} and on the {Web}",
journal = j-J-STAT-SOFT,
volume = "5",
number = "4",
pages = "1--13",
month = "????",
year = "2000",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v005.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v05/i04;
http://www.jstatsoft.org/v05/i04/code/;
http://www.jstatsoft.org/v05/i04/QV_man.pdf;
http://www.jstatsoft.org/v05/i04/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Patefield:2000:FAC,
author = "Mike Patefield",
title = "Fast and Accurate Calculation of {Owen}'s {$T$}
Function",
journal = j-J-STAT-SOFT,
volume = "5",
number = "5",
pages = "1--25",
month = "????",
year = "2000",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v005.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v05/i05;
http://www.jstatsoft.org/v05/i05/t.f;
http://www.jstatsoft.org/v05/i05/t.pdf;
http://www.jstatsoft.org/v05/i05/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{May:2000:CTS,
author = "Warren L. May and William D. Johnson",
title = "Constructing two-sided simultaneous confidence
intervals for multinomial proportions for small counts
in a large number of cells",
journal = j-J-STAT-SOFT,
volume = "5",
number = "6",
pages = "1--24",
month = "????",
year = "2000",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v005.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v05/i06;
http://www.jstatsoft.org/v05/i06/sison5.sas;
http://www.jstatsoft.org/v05/i06/Sisonfinal.pdf;
http://www.jstatsoft.org/v05/i06/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Coeurjolly:2000:SIF,
author = "Jean-Fran{\c{c}}ois Coeurjolly",
title = "Simulation and identification of the fractional
{Brownian} motion: a bibliographical and comparative
study",
journal = j-J-STAT-SOFT,
volume = "5",
number = "7",
pages = "1--53",
month = "????",
year = "2000",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v005.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v05/i07;
http://www.jstatsoft.org/v05/i07/simest.pdf;
http://www.jstatsoft.org/v05/i07/SimEstFBM;
http://www.jstatsoft.org/v05/i07/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Marsaglia:2000:ZMG,
author = "George Marsaglia and Wai Wan Tsang",
title = "The ziggurat method for generating random variables",
journal = j-J-STAT-SOFT,
volume = "5",
number = "8",
pages = "1--7",
month = "????",
year = "2000",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v005.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
note = "See comment \cite{Leong:2005:CIZ}.",
URL = "http://www.jstatsoft.org/v05/i08;
http://www.jstatsoft.org/v05/i08/rnorrexp.c;
http://www.jstatsoft.org/v05/i08/updates;
http://www.jstatsoft.org/v05/i08/ziggurat.pdf",
abstract = "We provide a new version of our ziggurat method for
generating a random variable from a given decreasing
density. It is faster and simpler than the original,
and will produce, for example, normal or exponential
variates at the rate of 15 million per second with a C
version on a 400MHz PC. It uses two tables, integers $
k_i $ and reals $ w_i $. Some 99\% of the time, the
required $x$ is produced by: Generate a random 32-bit
integer $j$ and let $i$ be the index formed from the
rightmost 8 bits of $j$. If $ j < k_i$ return $ x = j
\times w_i$.\par
We illustrate with C code that provides for inline
generation of both normal and exponential variables,
with a short procedure for setting up the necessary
tables.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Bradley:2001:IJT,
author = "James W. Bradley and R. Webster West",
title = "Interactive {Java} Tools for Exploring
High-dimensional Data",
journal = j-J-STAT-SOFT,
volume = "6",
number = "1",
pages = "??--??",
month = "????",
year = "2001",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v006.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v06/i01;
http://www.jstatsoft.org/v06/i01/bradley.tar;
http://www.jstatsoft.org/v06/i01/bradley/index.html;
http://www.jstatsoft.org/v06/i01/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Dayton:2001:SBS,
author = "C. Mitchell Dayton",
title = "{SUBSET}: Best Subsets using Information Criteria",
journal = j-J-STAT-SOFT,
volume = "6",
number = "2",
pages = "1--10",
month = "????",
year = "2001",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v006.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v06/i02;
http://www.jstatsoft.org/v06/i02/Code.rtf;
http://www.jstatsoft.org/v06/i02/SUBSET.doc;
http://www.jstatsoft.org/v06/i02/SUBSET.pdf;
http://www.jstatsoft.org/v06/i02/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Berchtold:2001:MCC,
author = "Andre Berchtold",
title = "{Markov} Chain Computation for Homogeneous and
Non-homogeneous Data: {MARCH 1.1} Users Guide",
journal = j-J-STAT-SOFT,
volume = "6",
number = "3",
pages = "1--81",
month = "????",
year = "2001",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v006.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v06/i03;
http://www.jstatsoft.org/v06/i03/march-11-c-win.zip;
http://www.jstatsoft.org/v06/i03/march-11-ug.ps;
http://www.jstatsoft.org/v06/i03/march-ex1_0;
http://www.jstatsoft.org/v06/i03/march-ex2_0;
http://www.jstatsoft.org/v06/i03/march.tar.gz;
http://www.jstatsoft.org/v06/i03/march_11_ug.pdf;
http://www.jstatsoft.org/v06/i03/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Badsberg:2001:GC,
author = "Jens Henrik Badsberg",
title = "A Guide to {CoCo}",
journal = j-J-STAT-SOFT,
volume = "6",
number = "4",
pages = "1--190",
month = "????",
year = "2001",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v006.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v06/i04;
http://www.jstatsoft.org/v06/i04/CoCo-1.5/;
http://www.jstatsoft.org/v06/i04/guide-JSS-1.pdf;
http://www.jstatsoft.org/v06/i04/PartII/;
http://www.jstatsoft.org/v06/i04/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Somerville:2001:FSI,
author = "Paul N. Somerville and Frank Bretz",
title = "{FORTRAN 90} and {SAS-IML} Programs for Computation of
Critical Values for Multiple Testing and Simultaneous
Confidence Intervals",
journal = j-J-STAT-SOFT,
volume = "6",
number = "5",
pages = "1--14",
month = "????",
year = "2001",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v006.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v06/i05;
http://www.jstatsoft.org/v06/i05/EXAMPLE/;
http://www.jstatsoft.org/v06/i05/FORTRAN/;
http://www.jstatsoft.org/v06/i05/jss2r.pdf;
http://www.jstatsoft.org/v06/i05/SAS/;
http://www.jstatsoft.org/v06/i05/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Antoniadis:2001:WEN,
author = "Anestis Antoniadis and J{\'e}r{\'e}mie Bigot and
Theofanis Sapatinas",
title = "Wavelet Estimators in Nonparametric Regression: a
Comparative Simulation Study",
journal = j-J-STAT-SOFT,
volume = "6",
number = "6",
pages = "1--83",
month = "????",
year = "2001",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v006.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v06/i06;
http://www.jstatsoft.org/v06/i06/codes/;
http://www.jstatsoft.org/v06/i06/html-help/;
http://www.jstatsoft.org/v06/i06/jss057Rev.pdf;
http://www.jstatsoft.org/v06/i06/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Scrucca:2001:NKS,
author = "Luca Scrucca",
title = "Nonparametric Kernel Smoothing Methods. The \pkg{sm}
library in {Xlisp--Stat}",
journal = j-J-STAT-SOFT,
volume = "6",
number = "7",
pages = "1--49",
month = "????",
year = "2001",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v006.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v06/i07;
http://www.jstatsoft.org/v06/i07/sm-doc_r.pdf;
http://www.jstatsoft.org/v06/i07/sm_r.zip;
http://www.jstatsoft.org/v06/i07/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Somerville:2001:NCM,
author = "Paul N. Somerville",
title = "Numerical Computation of Multivariate Normal and
Multivariate $t$ Probabilities over Ellipsoidal
Regions",
journal = j-J-STAT-SOFT,
volume = "6",
number = "8",
pages = "1--10",
month = "????",
year = "2001",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v006.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v06/i08;
http://www.jstatsoft.org/v06/i08/EXAMPLE/;
http://www.jstatsoft.org/v06/i08/FORTRAN/;
http://www.jstatsoft.org/v06/i08/jss2r.pdf;
http://www.jstatsoft.org/v06/i08/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Weisberg:2002:DRR,
author = "Sanford Weisberg",
title = "Dimension Reduction Regression in {R}",
journal = j-J-STAT-SOFT,
volume = "7",
number = "1",
pages = "1--22",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v07/i01;
http://www.jstatsoft.org/v07/i01/dr_1.0.tar.gz;
http://www.jstatsoft.org/v07/i01/drdoc.pdf;
http://www.jstatsoft.org/v07/i01/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "R; S-Plus",
}
@Article{Zeileis:2002:PSR,
author = "Achim Zeileis and Friedrich Leisch and Kurt Hornik and
Christian Kleiber",
title = "\pkg{strucchange}: an {R} package for Testing for
Structural Change in Linear Regression Models",
journal = j-J-STAT-SOFT,
volume = "7",
number = "2",
pages = "1--38",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v07/i02;
http://www.jstatsoft.org/v07/i02/strucchange.pdf;
http://www.jstatsoft.org/v07/i02/strucchange_0.9-5.tar.gz;
http://www.jstatsoft.org/v07/i02/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "R; S-Plus",
}
@Article{Marsaglia:2002:SDP,
author = "George Marsaglia and Wai Wan Tsang",
title = "Some Difficult-to-pass Tests of Randomness",
journal = j-J-STAT-SOFT,
volume = "7",
number = "3",
pages = "1--8",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v07/i03;
http://www.jstatsoft.org/v07/i03/tuftests.c;
http://www.jstatsoft.org/v07/i03/tuftests.pdf;
http://www.jstatsoft.org/v07/i03/updates",
abstract = "We describe three tests of randomness --- tests that
many random number generators fail. In particular, all
congruential generators --- even those based on a prime
modulus --- fail at least one of the tests, as do many
simple generators, such as shift register and lagged
Fibonacci. On the other hand, generators that pass the
three tests seem to pass all the tests in the Diehard
Battery of Tests.\par
Note that these tests concern the randomness of a
generator's output as a sequence of independent,
uniform 32-bit integers. For uses where the output is
converted to uniform variates in $ [0, 1) $, potential
flaws of the output as integers will seldom cause
problems after the conversion. Most generators seem to
be adequate for producing a set of uniform reals in $
[0, 1) $, but several important applications. notably
in cryptography and number theory --- for example,
establishing probable primes, complexity of factoring
algorithms, random partitions of large integers --- may
require satisfactory performance on the kinds of tests
we describe here.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Warnes:2002:HJL,
author = "Gregory R. Warnes",
title = "{HYDRA}: a {Java} library for {Markov} Chain {Monte
Carlo}",
journal = j-J-STAT-SOFT,
volume = "7",
number = "4",
pages = "1--32",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://software.biostat.washington.edu/statsoft/MCMC/Hydra;
http://software.biostat.washington.edu/statsoft/MCMC/Hydra/INSTALL.html;
http://www.jstatsoft.org/v07/i04;
http://www.jstatsoft.org/v07/i04/Description.pdf;
http://www.jstatsoft.org/v07/i04/Hydra_1.0.0.jar;
http://www.jstatsoft.org/v07/i04/Hydra_1.0.0.tgz;
http://www.jstatsoft.org/v07/i04/updates;
http://www.jstatsoft.org/v07/i04/UserGuide.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Lipkovich:2002:BSV,
author = "Ilya Lipkovich and Eric P. Smith",
title = "Biplot and Singular Value Decomposition Macros for
{Excel}{\copyright}",
journal = j-J-STAT-SOFT,
volume = "7",
number = "5",
pages = "1--15",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v07/i05;
http://www.jstatsoft.org/v07/i05/biplot01.xla;
http://www.jstatsoft.org/v07/i05/BIPLOT_paper_6_6_02.doc;
http://www.jstatsoft.org/v07/i05/BIPLOT_paper_6_6_02.pdf;
http://www.jstatsoft.org/v07/i05/BIPLOThelp.zip;
http://www.jstatsoft.org/v07/i05/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Valero-Mora:2002:CVL,
author = "Pedro M. Valero-Mora and Forrest W. Young",
title = "Computing and Visualizing Log-linear analysis
interactively",
journal = j-J-STAT-SOFT,
volume = "7",
number = "6",
pages = "1--9",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v07/i06;
http://www.jstatsoft.org/v07/i06/lglin.zip;
http://www.jstatsoft.org/v07/i06/updates;
http://www.jstatsoft.org/v07/i06/vislog6.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Ntzoufras:2002:GVS,
author = "Ioannis Ntzoufras",
title = "{Gibbs} Variable Selection Using {BUGS}",
journal = j-J-STAT-SOFT,
volume = "7",
number = "7",
pages = "1--19",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v07/i07;
http://www.jstatsoft.org/v07/i07/gvs-bugsfiles.zip;
http://www.jstatsoft.org/v07/i07/GVSusingBUGS.pdf;
http://www.jstatsoft.org/v07/i07/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Lawal:2002:GFV,
author = "H. Bayo Lawal and Richard A. Sundheim",
title = "Generating Factor Variables for Asymmetry,
Non-independence and Skew-symmetry Models in Square
Contingency Tables using {SAS}",
journal = j-J-STAT-SOFT,
volume = "7",
number = "8",
pages = "1--23",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v07/i08;
http://www.jstatsoft.org/v07/i08/generate.pdf;
http://www.jstatsoft.org/v07/i08/GENERATE.txt;
http://www.jstatsoft.org/v07/i08/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Belaire-Franch:2002:RPN,
author = "Jorge Belaire-Franch and Dulce Contreras",
title = "Recurrence Plots in Nonlinear Time Series Analysis:
Free Software",
journal = j-J-STAT-SOFT,
volume = "7",
number = "9",
pages = "1--18",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v07/i09;
http://www.jstatsoft.org/v07/i09/JSS_055.pdf;
http://www.jstatsoft.org/v07/i09/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Bonnet:2002:ZST,
author = "Eric Bonnet and Yves {Van de Peer}",
title = "\pkg{zt}: a Software Tool for Simple and Partial
{Mantel} Tests",
journal = j-J-STAT-SOFT,
volume = "7",
number = "10",
pages = "1--12",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v07/i10;
http://www.jstatsoft.org/v07/i10/updates;
http://www.jstatsoft.org/v07/i10/zt.pdf;
http://www.jstatsoft.org/v07/i10/zt_linux.tar.tgz;
http://www.jstatsoft.org/v07/i10/zt_solaris.tar.tgz",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Theus:2002:IDV,
author = "Martin Theus",
title = "Interactive Data Visualization using {Mondrian}",
journal = j-J-STAT-SOFT,
volume = "7",
number = "11",
pages = "1--9",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v07/i11;
http://www.jstatsoft.org/v07/i11/MondrianJSSV2.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Al-Subaihi:2002:VSM,
author = "Ali A. Al-Subaihi",
title = "Variable Selection in Multivariable Regression Using
{SAS\slash IML}",
journal = j-J-STAT-SOFT,
volume = "7",
number = "12",
pages = "1--20",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v07/i12;
http://www.jstatsoft.org/v07/i12/mv.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Moon:2002:WBS,
author = "Hojin Moon and J. Jack Lee and Hongshik Ahn and
Rumiana G. Nikolova",
title = "A {Web}-based Simulator for Sample Size and Power
Estimation in Animal Carcinogenicity Studies",
journal = j-J-STAT-SOFT,
volume = "7",
number = "13",
pages = "1--36",
month = "????",
year = "2002",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v007.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v07/i13;
http://www.jstatsoft.org/v07/i13/ACSSreview.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Tomz:2003:PCS,
author = "Michael Tomz and Jason Wittenberg and Gary King",
title = "\pkg{Clarify}: Software for Interpreting and
Presenting Statistical Results",
journal = j-J-STAT-SOFT,
volume = "8",
number = "1",
pages = "1--30",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i01/clarify.pdf;
http://www.jstatsoft.org/v08/i1",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "Clarify: Software for Interpreting and Presenting
Statistical Results",
}
@Article{King:2003:LRR,
author = "Gary King and Langche Zeng",
title = "Logistic Regression in Rare Events Data",
journal = j-J-STAT-SOFT,
volume = "8",
number = "2",
pages = "1--30",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i02/0s.pdf;
http://www.jstatsoft.org/v08/i2",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "Logistic Regression in Rare Events Data",
}
@Article{Dupont:2003:DDS,
author = "William D. Dupont and W. Dale {Plummer, Jr.}",
title = "Density Distribution Sunflower Plots",
journal = j-J-STAT-SOFT,
volume = "8",
number = "3",
pages = "1--5",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i03/SunflowerPlots.pdf;
http://www.jstatsoft.org/v08/i3",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "Density Distribution Sunflower Plots",
}
@Article{Contoni:2003:RNS,
author = "Eva Contoni",
title = "Resistant Nonparametric Smoothing with {S-PLUS}",
journal = j-J-STAT-SOFT,
volume = "8",
number = "3",
pages = "??--??",
month = "????",
year = "2003",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i03;
http://www.jstatsoft.org/v08/i03/;
http://www.jstatsoft.org/v08/i03/updates;
http://www.jstatsoft.org/v08/i03/v8.txt",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxnote = "Check publication data: no longer at journal Web
site??",
}
@Article{PerezSainzdeRozas:2003:UMB,
author = "Gloria {Perez Sainz de Rozas}",
title = "Using {Mathematica} to Build Non-Parametric
Statistical Tables",
journal = j-J-STAT-SOFT,
volume = "8",
number = "4",
pages = "1--26",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/mathematica.bib",
URL = "http://www.jstatsoft.org/v08/i04/tablasjss2.pdf;
http://www.jstatsoft.org/v08/i4",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "Using Mathematica to Build Non-Parametric Statistical
Tables",
}
@Article{Trindade:2003:IMB,
author = "A. Alexandre Trindade",
title = "Implementing Modifed {Burg} Algorithms in Multivariate
Subset Autoregressive Modeling",
journal = j-J-STAT-SOFT,
volume = "8",
number = "5",
pages = "1--68",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i05/pap1r2.pdf;
http://www.jstatsoft.org/v08/i5",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "Implementing Modifed Burg Algorithms in Multivariate
Subset Autoregressive Modeling",
}
@Article{Koenker:2003:SSM,
author = "Roger Koenker and Pin Ng",
title = "\pkg{SparseM}: a Sparse Matrix Package for {R}",
journal = j-J-STAT-SOFT,
volume = "8",
number = "6",
pages = "1--9",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i06/SparseM.pdf;
http://www.jstatsoft.org/v08/i6",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "{SparseM}: A Sparse Matrix Package for R",
}
@Article{Sanil:2003:NWW,
author = "Ashish Sanil and Shanti Gomatam and Alan F. Karr",
title = "{NISS WebSwap}: a {Web} Service for Data Swapping",
journal = j-J-STAT-SOFT,
volume = "8",
number = "7",
pages = "1--12",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i07/nisswebswap200206.pdf;
http://www.jstatsoft.org/v08/i7",
abstract = "Data swapping is a statistical disclosure limitation
practice that alters records in the data to be released
by switching values of attributes across pairs of
records in a fraction of the original data.\par
Web Services are an exciting new form of distributed
computing that allow users to invoke remote
applications nearly transparently. National Institute
of Statistical Sciences (NISS) has recently started
hosting NISS Web Services as a service and example to
the statistical sciences community. In this paper we
describe and provide usage information for NISS WebSwap
the initial NISS Web Service, which swaps one or more
attributes (fields) between user-specified records in a
microdata file, uploading the original data file from
the user's computer and downloading the file containing
the swapped records.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "{NISS} {WebSwap}: A Web Service for Data Swapping",
}
@Article{Chang:2003:MGP,
author = "Chwen-Ming Chang",
title = "{MinPROMEP}: Generation of Partially Replicated
Minimal Orthogonal Main-effect Plans Using a Novel
Algorithm",
journal = j-J-STAT-SOFT,
volume = "8",
number = "8",
pages = "1--15",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i08/paper.pdf;
http://www.jstatsoft.org/v08/i8",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "{MinPROMEP}: Generation of Partially Replicated
Minimal Orthogonal Main-Effect Plans Using a Novel
Algorithm",
}
@Article{Fotouhi:2003:CEP,
author = "Ali Reza Fotouhi",
title = "Comparisons of Estimation Procedures for Nonlinear
Multilevel Models",
journal = j-J-STAT-SOFT,
volume = "8",
number = "9",
pages = "1--39",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i09/Paper.pdf;
http://www.jstatsoft.org/v08/i9",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "Comparisons of Estimation Procedures for Nonlinear
Multilevel Models",
}
@Article{Firth:2003:CFP,
author = "David Firth",
title = "{CGIwithR}: Facilities for processing {Web} forms
using {R}",
journal = j-J-STAT-SOFT,
volume = "8",
number = "10",
pages = "1--8",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i10;
http://www.jstatsoft.org/v08/i10/CGIwithR-overview.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Ligges:2003:SRP,
author = "Uwe Ligges and Martin M{\"a}chler",
title = "\pkg{Scatterplot3d} --- an {R} package for Visualizing
Multivariate Data",
journal = j-J-STAT-SOFT,
volume = "8",
number = "11",
pages = "1--20",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i11;
http://www.jstatsoft.org/v08/i11/JSSs3d.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Liu:2003:EAU,
author = "Honghu Liu and Tongtong Wu",
title = "Estimating the Area under a Receiver Operating
Characteristic Curve For Repeated Measures Design",
journal = j-J-STAT-SOFT,
volume = "8",
number = "12",
pages = "1--18",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i12;
http://www.jstatsoft.org/v08/i12/roc.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Kuonen:2003:NIP,
author = "Diego Kuonen",
title = "Numerical Integration in {S-PLUS} or {R}: a Survey",
journal = j-J-STAT-SOFT,
volume = "8",
number = "13",
pages = "1--14",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i13;
http://www.jstatsoft.org/v08/i13/article.pdf",
abstract = "This paper reviews current quadrature methods for
approximate calculation of integrals within S-Plus or
R. Starting with the general framework, Gaussian
quadrature will be discussed first, followed by
adaptive rules and Monte Carlo methods. Finally, a
comparison of the methods presented is given. The aim
of this survey paper is to help readers, not expert in
computing, to apply numerical integration methods and
to realize that numerical analysis is an art, not a
science.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "Adaptive method; Comparison; Gaussian quadrature;
Monte Carlo method; Quadrature",
}
@Article{Marsaglia:2003:XR,
author = "George Marsaglia",
title = "Xorshift {RNGs}",
journal = j-J-STAT-SOFT,
volume = "8",
number = "14",
pages = "1--6",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i14",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/bibnet/authors/m/marsaglia-george.bib;
http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/mathcw.bib;
http://www.math.utah.edu/pub/tex/bib/prng.bib;
http://www.math.utah.edu/pub/tex/bib/tomacs.bib",
note = "See \cite{Brent:2004:NMX} for corrections and the
equivalence of xorshift generators and the
well-understood linear feedback shift register
generators. See also
\cite{Salmon:2011:PRN,Saito:2012:DCS,Steele:2014:FSP}
for the failure of Marsaglia's {\tt xorwow()} generator
from this paper. See
\cite{Panneton:2005:XRN,Vigna:2016:EEM} for detailed
analysis.",
URL = "http://www.jstatsoft.org/v08/i14;
http://www.jstatsoft.org/v08/i14/xorshift.pdf",
abstract = "Description of a class of simple, extremely fast
random number generators (RNGs) with periods $ 2^k - 1
$ for $ k = 32, 64, 96, 128, 160, 192 $. These RNGs
seem to pass tests of randomness very well.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Fox:2003:EDR,
author = "John Fox",
title = "Effect Displays in {R} for Generalised Linear Models",
journal = j-J-STAT-SOFT,
volume = "8",
number = "15",
pages = "1--27",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i15",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i15;
http://www.jstatsoft.org/v08/i15/effect-displays-revised.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Peng:2003:MDP,
author = "Roger D. Peng",
title = "Multi-dimensional Point Process Models in {R}",
journal = j-J-STAT-SOFT,
volume = "8",
number = "16",
pages = "1--27",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i16",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i16;
http://www.jstatsoft.org/v08/i16/ptprocR102.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Esty:2003:BPP,
author = "Warren W. Esty and Jeffrey D. Banfield",
title = "The Box-Percentile Plot",
journal = j-J-STAT-SOFT,
volume = "8",
number = "17",
pages = "1--14",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i17",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i17;
http://www.jstatsoft.org/v08/i17/BoxPercentilePlot.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Marsaglia:2003:EKD,
author = "George Marsaglia and Wai Wan Tsang and Jingbo Wang",
title = "Evaluating {Kolmogorov}'s Distribution",
journal = j-J-STAT-SOFT,
volume = "8",
number = "18",
pages = "1--4",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i18",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i18;
http://www.jstatsoft.org/v08/i18/k.pdf",
abstract = "Kolmogorov's goodness-of-fit measure, $ D_n $, for a
sample CDF has consistently been set aside for methods
such as the $ D_n^+ $ or $ D_n^- $; of Smirnov,
primarily, it seems, because of the difficulty of
computing the distribution of $ D_n $. As far as we
know, no easy way to compute that distribution has ever
been provided in the 70+ years since Kolmogorov's
fundamental paper. We provide one here, a C procedure
that provides $ \mbox {Pr}(D_n < d) $ with 13--15 digit
accuracy for $n$ ranging from $2$ to at least $ 16000$.
We assess the (rather slow) approach to limiting form,
and because computing time can become excessive for
probabilities $ > 0.999$ with $n$'s of several
thousand, we provide a quick approximation that gives
accuracy to the 7th digit for such cases.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Murdoch:2003:POR,
author = "Duncan Murdoch",
title = "\pkg{Orientlib}: An {R} Package for Orientation Data",
journal = j-J-STAT-SOFT,
volume = "8",
number = "19",
pages = "1--11",
month = "????",
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i19",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i19;
http://www.jstatsoft.org/v08/i19/orientlib_paper.pdf",
abstract = "\pkg{Orientlib} is an R package to facilitate working
with orientation data, i.e. elements of SO(3). It
provides automatic translation between different
representations of orientations, including rotation
matrices, quaternions, Euler angles and skew-symmetric
matrices; it also has functions for fitting regression
models and displaying orientations. This paper reviews
simple properties of orientation data and describes
\pkg{Orientlib}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "Euler angles; orientation data; quaternions; rotation
matrices; SO(3)",
}
@Article{Botcher:2003:PDP,
author = "Susanne G. B{\o}tcher and Claus Dethlefsen",
title = "\pkg{deal}: a Package for Learning {Bayesian}
Networks",
journal = j-J-STAT-SOFT,
volume = "8",
number = "20",
pages = "1--40",
day = "28",
month = dec,
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i20",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Feb 25 11:20:56 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i20/deal.pdf;
http://www.jstatsoft.org/v08/i20/deal_1.2-4.tar.gz;
http://www.jstatsoft.org/v08/i20/jcgs.tex",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "deal: A Package for Learning Bayesian Networks",
}
@Article{Khan:2003:VBS,
author = "Haseeb Ahmad Khan",
title = "A {Visual Basic} Software for Computing {Fisher}'s
Exact Probability",
journal = j-J-STAT-SOFT,
volume = "8",
number = "21",
pages = "1--7",
day = "28",
month = dec,
year = "2003",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v008.i21",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Feb 25 11:20:56 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v08/i21/Article-JSS.PDF",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "A Visual Basic Software for Computing Fisher's Exact
Probability",
}
@Article{Ngo:2004:SMM,
author = "Long Ngo and Matthew P. Wand",
title = "Smoothing with Mixed Model Software",
journal = j-J-STAT-SOFT,
volume = "9",
number = "1",
pages = "1--54",
day = "1",
month = jan,
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v009.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Feb 25 11:20:56 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v09/i01/Abstract%20for%20JCGS.txt;
http://www.jstatsoft.org/v09/i01/code.zip;
http://www.jstatsoft.org/v09/i01/softpaper_010804.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "Smoothing with Mixed Model Software",
}
@Article{Marsaglia:2004:EAD,
author = "George Marsaglia and John Marsaglia",
title = "Evaluating the {Anderson--Darling} Distribution",
journal = j-J-STAT-SOFT,
volume = "9",
number = "2",
pages = "1--5",
day = "25",
month = feb,
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v009.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Feb 25 11:20:56 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v09/i02/ad.pdf;
http://www.jstatsoft.org/v09/i02/ADinf.c;
http://www.jstatsoft.org/v09/i02/AnDarl.c",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "Evaluating the Anderson-Darling Distribution",
}
@Article{Miller:2004:CMS,
author = "Alan J. Miller",
title = "A Collection of Mathematical and Statistical Routines
in {FORTRAN 90}",
journal = j-J-STAT-SOFT,
volume = "9",
number = "3",
pages = "1--3",
day = "25",
month = feb,
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v009.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Feb 25 11:20:56 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v09/i03/F90lib.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxtitle = "A Collection of Mathematical and Statistical Routines
in Fortran 90",
}
@Article{Al-Subaihi:2004:SCM,
author = "Ali A. Al-Subaihi",
title = "Simulating Correlated Multivariate Pseudorandom
Numbers",
journal = j-J-STAT-SOFT,
volume = "9",
number = "4",
pages = "1--20",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v009.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=85&url=v09/i04/paper.pdf&ct=1",
accepted = "2004-02-29",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2003-01-04",
xxtitle = "Simulating Correlated Multivariate Pseudorandom
Numbers",
}
@Article{West:2004:IS,
author = "R. Webster West and Yuping Wu and Duane Heydt",
title = "An Introduction to {StatCrunch 3.0}",
journal = j-J-STAT-SOFT,
volume = "9",
number = "5",
pages = "??--??",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v009.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=86&url=v09/i05/scjss/&ct=1",
accepted = "2004-03-05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2003-10-10",
xxtitle = "An Introduction to {StatCrunch} 3.0",
}
@Article{Strand:2004:SNT,
author = "Matthew Strand and Shalender Bhasin and Hsiao-Pin
Liu",
title = "A Set of Nonparametric Tests for Experiments with
Lattice-Ordered Means: Theory, Programs, and
Applications",
journal = j-J-STAT-SOFT,
volume = "9",
number = "6",
pages = "1--16",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v009.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=87&url=v09/i06/paper.pdf&ct=1",
accepted = "2004-03-20",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2003-07-09",
xxtitle = "A Set of Nonparametric Tests for Experiments with
Lattice-Ordered Means: Theory, Programs, and
Applications",
}
@Article{Elam:2004:SSS,
author = "Matthew E. Elam and Kenneth E. Case and Jong-Min Kim",
title = "Second Stage Short Run {$ (\bar X, v_c) $} and {$
(\bar X, s_c) $} Control Charts",
journal = j-J-STAT-SOFT,
volume = "9",
number = "7",
pages = "1--31",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v009.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=88&url=v09/i07/paper.pdf&ct=1",
accepted = "2004-03-23",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2003-08-29",
xxtitle = "Second Stage Short Run (X, vc) and (X, sc) Control
Charts",
}
@Article{Lumley:2004:ACS,
author = "Thomas Lumley",
title = "Analysis of Complex Survey Samples",
journal = j-J-STAT-SOFT,
volume = "9",
number = "8",
pages = "1--19",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v009.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=89&url=v09/i08/paper.pdf&ct=1",
accepted = "2004-04-15",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2003-08-21",
xxtitle = "Analysis of Complex Survey Samples",
}
@Article{Wiens:2004:MSP,
author = "Douglas P. Wiens",
title = "{MATCH} --- a Software Package for Robust Profile
Matching Using {S-Plus}",
journal = j-J-STAT-SOFT,
volume = "10",
number = "1",
pages = "1--35",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v010.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=91&url=v10/i01/manual2.pdf&ct=1",
accepted = "2004-04-26",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2002-10-06",
xxtitle = "{MATCH} - A Software Package for Robust Profile
Matching Using S-{PLUS}",
}
@Article{Cantoni:2004:RNS,
author = "Eva Cantoni",
title = "Resistant Nonparametric Smoothing with {S-PLUS}",
journal = j-J-STAT-SOFT,
volume = "10",
number = "2",
pages = "1--6",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v010.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=93&url=v10/i02/Mspline4.pdf&ct=1",
accepted = "2004-04-26",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2002-07-17",
xxtitle = "Resistant Nonparametric Smoothing with S-{PLUS}",
}
@Article{Edlund:2004:CMS,
author = "Ove Edlund",
title = "{CMregr} --- a {Matlab} software package for finding
{CM}-Estimates for Regression",
journal = j-J-STAT-SOFT,
volume = "10",
number = "3",
pages = "1--11",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v010.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=92&url=v10/i03/CMregr_rev2.pdf&ct=1",
accepted = "2004-04-26",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2002-08-20",
xxtitle = "{CMregr} - A Matlab Software Package for Finding
{CM}-Estimates for Regression",
}
@Article{Cantoni:2004:ARQ,
author = "Eva Cantoni",
title = "Analysis of Robust Quasi-deviances for Generalized
Linear Models",
journal = j-J-STAT-SOFT,
volume = "10",
number = "4",
pages = "1--9",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v010.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=94&url=v10/i04/robGLMquasidev1.pdf&ct=1",
accepted = "2004-04-26",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2002-11-07",
xxtitle = "Analysis of Robust Quasi-Deviances for Generalized
Linear Models",
}
@Article{Stromberg:2004:WWS,
author = "Arnold J. Stromberg",
title = "Why Write Statistical Software? The Case of Robust
Statistical Methods",
journal = j-J-STAT-SOFT,
volume = "10",
number = "5",
pages = "1--8",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v010.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=90&url=v10/i05/finalintro.pdf&ct=1",
accepted = "2004-04-26",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-01-26",
xxtitle = "Why Write Statistical Software? The Case of Robust
Statistical Methods",
}
@Article{Baiocchi:2004:UPS,
author = "Giovanni Baiocchi",
title = "Using {Perl} for Statistics: Data Processing and
Statistical Computing",
journal = j-J-STAT-SOFT,
volume = "11",
number = "1",
pages = "1--81",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=95&url=v11/i01/paper.pdf&ct=1",
accepted = "2004-05-16",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2003-02-21",
xxtitle = "Using Perl for Statistics: Data Processing and
Statistical Computing",
}
@Article{Mathias:2004:ASA,
author = "Adolf Mathias and Florian Grond and Ramon Guardans and
Detlef Seese and Miguel Canela and Hans H. Diebner",
title = "Algorithms for Spectral Analysis of Irregularly
Sampled Time Series",
journal = j-J-STAT-SOFT,
volume = "11",
number = "2",
pages = "1--30",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=96&url=v11/i02/paper.pdf&ct=1",
accepted = "2004-05-19",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2003-07-22",
xxtitle = "Algorithms for Spectral Analysis of Irregularly
Sampled Time Series",
}
@Article{Marsaglia:2004:FGD,
author = "George Marsaglia and Wai Wan Tsang and Jingbo Wang",
title = "Fast Generation of Discrete Random Variables",
journal = j-J-STAT-SOFT,
volume = "11",
number = "3",
pages = "1--8",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=99&url=v11/i03/discrete.pdf&ct=1",
accepted = "2004-07-12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-06-05",
xxtitle = "Fast Generation of Discrete Random Variables",
}
@Article{Marsaglia:2004:END,
author = "George Marsaglia",
title = "Evaluating the Normal Distribution",
journal = j-J-STAT-SOFT,
volume = "11",
number = "4",
pages = "1--7",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=100&url=v11/i04/cphi.pdf&ct=1",
accepted = "2004-07-18",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "This article exhibits accurate, compact, and fast
algorithms for computation of the normal distribution
function and the complementary normal distribution,
which have a simple relation to the error function and
the complementary error function. They appear to be
improvements on almost all previously-published
algorithms for these functions. However, closer study
shows that the complementary normal distribution
function has an unchecked out-of-bounds array access
for $ |x| >= 17 $, and its Taylor series sum has poor
convergence because the tabulated intervals are twice
too wide. The Taylor series sum for the normal
distribution function is expanded around $ x = 0 $, and
thus has poor convergence for large $ |x| $. Neither
function takes into account the accuracy loss when the
computed result is the larger of the two (their sum is
one, and their range is $ [ - \infty, + \infty]$),
although the text discusses the problem. The article
also discusses the historical origin of the term
``error function'', tracing it to J. W. Glaisher in
1871.",
submitted = "2004-06-05",
xxtitle = "Evaluating the Normal Distribution",
}
@Article{Brent:2004:NMX,
author = "Richard P. Brent",
title = "Note on {Marsaglia}'s Xorshift Random Number
Generators",
journal = j-J-STAT-SOFT,
volume = "11",
number = "5",
pages = "1--5",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/bibnet/authors/m/marsaglia-george.bib;
http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/mathcw.bib;
http://www.math.utah.edu/pub/tex/bib/prng.bib;
http://www.math.utah.edu/pub/tex/bib/tomacs.bib",
note = "See
\cite{Marsaglia:2003:XR,Panneton:2005:XRN,Vigna:2016:EEM}.
This article shows the equivalence of xorshift
generators and the well-understood linear feedback
shift register generators.",
URL = "http://www.jstatsoft.org/counter.php?id=101&url=v11/i05/v11i05.pdf&ct=1",
accepted = "2004-08-25",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-07-07",
}
@Article{Hojsgaard:2004:PMP,
author = "S{\o}ren H{\o}jsgaard",
title = "The \pkg{mimR} Package for Graphical Modelling in
{R}",
journal = j-J-STAT-SOFT,
volume = "11",
number = "6",
pages = "1--13",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=102&url=v11/i06/v11i06.pdf&ct=1",
accepted = "2004-10-02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-07-06",
xxtitle = "The {mimR} Package for Graphical Modelling in R",
}
@Article{King:2004:TPE,
author = "Gary King",
title = "{{\textfrak{E}I}}: a Program for Ecological
Inference",
journal = j-J-STAT-SOFT,
volume = "11",
number = "7",
pages = "1--41",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=103&url=v11/i07/v11i07.pdf&ct=1",
accepted = "2004-09-28",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2003-09-29",
xxtitle = "{EI}: A Program for Ecological Inference",
}
@Article{Leisch:2004:FGF,
author = "Friedrich Leisch",
title = "{FlexMix}: a General Framework for Finite Mixture
Models and Latent Class Regression in {R}",
journal = j-J-STAT-SOFT,
volume = "11",
number = "8",
pages = "1--18",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=104&url=v11/i08/v11i08.pdf&ct=1",
accepted = "2004-10-18",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-04-19",
xxtitle = "{FlexMix}: A General Framework for Finite Mixture
Models and Latent Class Regression in R",
}
@Article{Karatzoglou:2004:PKS,
author = "Alexandros Karatzoglou and Alex Smola and Kurt Hornik
and Achim Zeileis",
title = "\pkg{kernlab} --- An {S4} Package for Kernel Methods
in {R}",
journal = j-J-STAT-SOFT,
volume = "11",
number = "9",
pages = "1--20",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=105&url=v11/i09/v11i09.pdf&ct=1",
accepted = "2004-11-02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-08-15",
xxtitle = "kernlab - An S4 Package for Kernel Methods in R",
}
@Article{Zeileis:2004:ECH,
author = "Achim Zeileis",
title = "Econometric Computing with {HC} and {HAC} Covariance
Matrix Estimators",
journal = j-J-STAT-SOFT,
volume = "11",
number = "10",
pages = "1--17",
month = "????",
year = "2004",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v011.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=106&url=v11/i10/v11i10.pdf&ct=1",
accepted = "2004-11-29",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-11-09",
xxtitle = "Econometric Computing with {HC} and {HAC} Covariance
Matrix Estimators",
}
@Article{Firth:2005:BTM,
author = "David Firth",
title = "{Bradley--Terry} Models in {R}",
journal = j-J-STAT-SOFT,
volume = "12",
number = "1",
pages = "1--12",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v012.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=107&url=v12/i01&ct=2;
http://www.jstatsoft.org/counter.php?id=107&url=v12/i01/v12i01.pdf&ct=1",
accepted = "2005-01-07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-07",
xxtitle = "Bradley-Terry Models in R",
}
@Article{Jamshidian:2005:SSI,
author = "Mortaza Jamshidian and Wei Liu and Ying Zhang and
Farid Jamshidian",
title = "{Simreg}: a Software Including Some New Developments
in Multiple Comparison and Simultaneous Confidence
Bands for Linear Regression Models",
journal = j-J-STAT-SOFT,
volume = "12",
number = "2",
pages = "1--22",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v012.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=109&url=v12/i02&ct=2;
http://www.jstatsoft.org/counter.php?id=109&url=v12/i02/v12i02.pdf&ct=1",
accepted = "2005-01-07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-07",
}
@Article{Panneton:2005:XRN,
author = "Fran{\c{c}}ois Panneton and Pierre L'Ecuyer",
title = "On the xorshift random number generators",
journal = j-TOMACS,
volume = "15",
number = "4",
pages = "346--361",
month = oct,
year = "2005",
CODEN = "ATMCEZ",
DOI = "https://doi.org/10.1145/1113316.1113319",
ISSN = "1049-3301 (print), 1558-1195 (electronic)",
ISSN-L = "1049-3301",
bibdate = "Thu Feb 16 10:42:56 MST 2006",
bibsource = "http://www.acm.org/pubs/contents/journals/tomacs/;
http://www.math.utah.edu/pub/bibnet/authors/m/marsaglia-george.bib;
http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/mathcw.bib;
http://www.math.utah.edu/pub/tex/bib/prng.bib;
http://www.math.utah.edu/pub/tex/bib/tomacs.bib",
note = "See
\cite{Marsaglia:2003:XR,Brent:2004:NMX,Vigna:2016:EEM}.",
abstract = "G. Marsaglia recently introduced a class of very fast
xorshift random number generators, whose implementation
uses three ``xorshift'' operations. They belong to a
large family of generators based on linear recurrences
modulo 2, which also includes shift-register
generators, the Mersenne twister, and several others.
In this article, we analyze the theoretical properties
of xorshift generators, search for the best ones with
respect to the equidistribution criterion, and test
them empirically. We find that the vast majority of
xorshift generators with only three xorshift
operations, including those having good
equidistribution, fail several simple statistical
tests. We also discuss generators with more than three
xorshifts.",
acknowledgement = ack-nhfb,
fjournal = "ACM Transactions on Modeling and Computer Simulation",
journal-URL = "http://portal.acm.org/browse_dl.cfm?&idx=J781",
}
@Article{Sturtz:2005:PRP,
author = "Sibylle Sturtz and Uwe Ligges and Andrew Gelman",
title = "\pkg{R2WinBUGS}: a Package for Running {WinBUGS} from
{R}",
journal = j-J-STAT-SOFT,
volume = "12",
number = "3",
pages = "1--16",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v012.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=110&url=v12/i03&ct=2;
http://www.jstatsoft.org/counter.php?id=110&url=v12/i03/v12i03.pdf&ct=1",
accepted = "2005-01-07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-07",
xxtitle = "R2WinBUGS: A Package for Running {WinBUGS} from R",
}
@Article{Mineo:2005:STE,
author = "Angelo M. Mineo and Mariantonietta Ruggieri",
title = "A Software Tool for the Exponential Power
Distribution: The \pkg{normalp} Package",
journal = j-J-STAT-SOFT,
volume = "12",
number = "4",
pages = "1--24",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v012.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=111&url=v12/i04&ct=2;
http://www.jstatsoft.org/counter.php?id=111&url=v12/i04/v12i04.pdf&ct=1",
accepted = "2005-01-12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-12",
xxtitle = "A Software Tool for the Exponential Power
Distribution: The normalp package",
}
@Article{Ritz:2005:BAU,
author = "Christian Ritz and Jens C. Streibig",
title = "Bioassay Analysis Using {R}",
journal = j-J-STAT-SOFT,
volume = "12",
number = "5",
pages = "1--22",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v012.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=112&url=v12/i05&ct=2;
http://www.jstatsoft.org/counter.php?id=112&url=v12/i05/v12i05.pdf&ct=1",
accepted = "2005-01-19",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-19",
xxtitle = "Bioassay Analysis using R",
}
@Article{Baddeley:2005:PSR,
author = "Adrian Baddeley and Rolf Turner",
title = "\pkg{spatstat}: An {R} Package for Analyzing Spatial
Point Patterns",
journal = j-J-STAT-SOFT,
volume = "12",
number = "6",
pages = "1--42",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v012.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=113&url=v12/i06&ct=2;
http://www.jstatsoft.org/counter.php?id=113&url=v12/i06/v12i06.pdf&ct=1",
accepted = "2005-01-26",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-26",
xxtitle = "spatstat: An R Package for Analyzing Spatial Point
Patterns",
}
@Article{Leong:2005:CIZ,
author = "Philip Leong and Guanglie Zhang and Dong-U Lee and
Wayne Luk and John Villasenor",
title = "A Comment on the Implementation of the Ziggurat
Method",
journal = j-J-STAT-SOFT,
volume = "12",
number = "7",
pages = "1--44",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v012.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
note = "See \cite{Marsaglia:2000:ZMG}.",
URL = "http://www.jstatsoft.org/counter.php?id=114&url=v12/i07&ct=2;
http://www.jstatsoft.org/counter.php?id=114&url=v12/i07/v12i07.pdf&ct=1",
abstract = "We show that the short period of the uniform random
number generator in the published implementation of
Marsaglia and Tsang's Ziggurat method for generating
random deviates can lead to poor distributions.
Changing the uniform random number generator used in
its implementation fixes this issue.",
accepted = "2005-02-08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-02-08",
xxtitle = "A Comment on the Implementation of the Ziggurat
Method",
}
@Article{Johnstone:2005:ERP,
author = "Iain M. Johnstone and Bernard W. Silverman",
title = "{EbayesThresh}: {R} Programs for Empirical {Bayes}
Thresholding",
journal = j-J-STAT-SOFT,
volume = "12",
number = "8",
pages = "1--38",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v012.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=125&url=v12/i08&ct=2;
http://www.jstatsoft.org/counter.php?id=125&url=v12/i08/v12i08.pdf&ct=1",
accepted = "2005-04-06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-04-06",
xxtitle = "{EbayesThresh}: R Programs for Empirical Bayes
Thresholding",
}
@Article{Weisberg:2005:LOW,
author = "Sanford Weisberg",
title = "Lost Opportunities: Why We Need a Variety of
Statistical Languages",
journal = j-J-STAT-SOFT,
volume = "13",
number = "1",
pages = "1--12",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=115&url=v13/i01&ct=2;
http://www.jstatsoft.org/counter.php?id=115&url=v13/i01/v13i01.pdf&ct=1",
accepted = "2004-12-20",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "2004-12-20",
xxtitle = "Lost Opportunities: Why We Need a Variety of
Statistical Languages",
}
@Article{Medrano-Soto:2005:BBA,
author = "Arturo Medrano-Soto and J. Andr{\'e}s Christen and
Julio Collado-Vides",
title = "{BClass}: a {Bayesian} Approach Based on Mixture
Models for Clustering and Classification of
Heterogeneous Biological Data",
journal = j-J-STAT-SOFT,
volume = "13",
number = "2",
pages = "1--18",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=116&url=v13/i02&ct=2;
http://www.jstatsoft.org/counter.php?id=116&url=v13/i02/v13i02.pdf&ct=1",
accepted = "2004-12-20",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "2004-12-20",
xxtitle = "{BClass}: A Bayesian Approach Based on Mixture Models
for Clustering and Classification of Heterogeneous
Biological Data",
}
@Article{Iversen:2005:VED,
author = "Philip W. Iversen and Mervyn G. Marasinghe",
title = "Visualizing Experimental Designs for Balanced {ANOVA}
Models",
journal = j-J-STAT-SOFT,
volume = "13",
number = "3",
pages = "1--18",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=117&url=v13/i03&ct=2;
http://www.jstatsoft.org/counter.php?id=117&url=v13/i03/v13i03.pdf&ct=1",
accepted = "0000-00-00",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "0000-00-00",
xxtitle = "Visualizing Experimental Designs for Balanced {ANOVA}
Models using Lisp-Stat",
}
@Article{Narasimhan:2005:LSJ,
author = "Balasubramanian Narasimhan",
title = "{Lisp--Stat} to {Java} to {R}",
journal = j-J-STAT-SOFT,
volume = "13",
number = "4",
pages = "1--10",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=118&url=v13/i04&ct=2;
http://www.jstatsoft.org/counter.php?id=118&url=v13/i04/v13i04.pdf&ct=1",
accepted = "0000-00-00",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "0000-00-00",
xxtitle = "Lisp-Stat to Java to R",
}
@Article{Udina:2005:IBC,
author = "Frederic Udina",
title = "Interactive Biplot Construction",
journal = j-J-STAT-SOFT,
volume = "13",
number = "5",
pages = "1--16",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=119&url=v13/i05&ct=2;
http://www.jstatsoft.org/counter.php?id=119&url=v13/i05/v13i05.pdf&ct=1",
accepted = "0000-00-00",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "0000-00-00",
xxtitle = "Interactive Biplot Construction",
}
@Article{Josselin:2005:IGI,
author = "Didier Josselin",
title = "Interactive Geographical Information System using
{Lisp--Stat}: Prototypes and Applications",
journal = j-J-STAT-SOFT,
volume = "13",
number = "6",
pages = "1--34",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=122&url=v13/i06&ct=2;
http://www.jstatsoft.org/counter.php?id=122&url=v13/i06/v13i06.pdf&ct=1",
accepted = "0000-00-00",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "0000-00-00",
xxtitle = "Interactive Geographical Information System using
Lisp-Stat: Prototypes and Applications",
}
@Article{deLeeuw:2005:AXS,
author = "Jan de Leeuw",
title = "On Abandoning {XLISP--STAT}",
journal = j-J-STAT-SOFT,
volume = "13",
number = "7",
pages = "1--5",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=121&url=v13/i07&ct=2;
http://www.jstatsoft.org/counter.php?id=121&url=v13/i07/v13i07.pdf&ct=1",
accepted = "0000-00-00",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "0000-00-00",
xxtitle = "On Abandoning {XLISP}-{STAT}",
}
@Article{Molina:2005:VTT,
author = "J. Gabriel Molina and Rub{\'e}n Ledesma and Pedro M.
Valero-Mora and Forrest W. Young",
title = "A Video Tour through {ViSta 6.4}",
journal = j-J-STAT-SOFT,
volume = "13",
number = "8",
pages = "1--13",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=122&url=v13/i08&ct=2;
http://www.jstatsoft.org/counter.php?id=122&url=v13/i08/v13i08.pdf&ct=1",
accepted = "0000-00-00",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "0000-00-00",
xxtitle = "A Video Tour through {ViSta} 6.4, a Visual Statistical
System based on Lisp-Stat",
}
@Article{Tierney:2005:SNP,
author = "Luke Tierney",
title = "Some Notes on the Past and Future of {Lisp--Stat}",
journal = j-J-STAT-SOFT,
volume = "13",
number = "9",
pages = "1--15",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=123&url=v13/i09&ct=2;
http://www.jstatsoft.org/counter.php?id=123&url=v13/i09/v13i09.pdf&ct=1",
accepted = "0000-00-00",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "0000-00-00",
xxtitle = "Some Notes on the Past and Future of Lisp-Stat",
}
@Article{Valero-Mora:2005:HLS,
author = "Pedro Valero-Mora and Frederic Udina",
title = "The Health of {Lisp--Stat}",
journal = j-J-STAT-SOFT,
volume = "13",
number = "10",
pages = "1--5",
month = "????",
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v013.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=124&url=v13/i10&ct=2;
http://www.jstatsoft.org/counter.php?id=124&url=v13/i10/v13i10.pdf&ct=1",
accepted = "0000-00-00",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "0000-00-00",
xxtitle = "The Health of Lisp-Stat",
}
@Article{Boyle:2005:BRA,
author = "Thomas Boyle",
title = "Book Review: {{\booktitle{The Analysis of Gene
Expression Data: Methods and Software}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-1",
pages = "1--2",
month = apr,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v14/b01",
abstract = "In this article a procedure is proposed to simulate
fractional fields, which are non Gaussian counterpart
of the fractional Brownian motion. These fields, called
real harmonizable (multi)fractional L{\'e}vy motions,
allow fixing the H{\"o}lder exponent at each point.
FracSim is an R package developed in R and C language.
Parallel computers have been also used.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-04-14; Accepted 2005-04-14",
}
@Article{Murdoch:2005:BRC,
author = "Duncan Murdoch",
title = "Book Review: {{\booktitle{Computational
Statistics}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-2",
pages = "1--4",
month = apr,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v14/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-04-17; Accepted 2005-04-17",
}
@Article{Pierce:2005:BRI,
author = "John G. Pierce",
title = "Book Review: {{\booktitle{Introduction to MATLAB with
Numerical Preliminaries}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-3",
pages = "1--3",
month = aug,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v14/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-08-01; Accepted 2005-08-01",
}
@Article{deLeeuw:2005:BRM,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Modern Multidimensional
Scaling: Theory and Applications}} (Second Edition)}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-4",
pages = "1--2",
month = sep,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.b04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v14/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-09-01; Accepted 2005-09-01",
}
@Article{deLeeuw:2005:BRC,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Correspondence Analysis and
Data Coding with Java and R}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-5",
pages = "1--2",
month = sep,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.b05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-09-08; Accepted 2005-09-08",
}
@Article{deLeeuw:2005:BRR,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{An R and S-PLUS Companion to
Multivariate Analysis}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-6",
pages = "1--3",
month = sep,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.b06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-09-16; Accepted 2005-09-16",
}
@Article{Gould:2005:BRU,
author = "Robert Gould",
title = "Book Review: {{\booktitle{Using R for Introductory
Statistics}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-7",
pages = "1--3",
month = nov,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.b07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/b07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-11-09; Accepted 2005-11-09",
}
@Article{Fox:2005:BRB,
author = "John Fox",
title = "Book Review: {{\booktitle{The Basics of S-Plus}},
Fourth Edition}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-8",
pages = "1--3",
month = dec,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.b08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/b08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-12-15; Accepted 2005-12-15",
}
@Article{Nason:2005:PPS,
author = "Guy Nason",
title = "\pkg{pinktoe}: Semi-automatic Traversal of Trees",
journal = j-J-STAT-SOFT,
volume = "14",
number = "1",
pages = "1--11",
day = "29",
month = apr,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=127&url=v14/i01&ct=2;
http://www.jstatsoft.org/counter.php?id=127&url=v14/i01/v14i01.pdf&ct=1",
accepted = "2005-04-19",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-04-19",
xxtitle = "pinktoe: Semi-automatic Traversal of Trees",
}
@Article{McMillan:2005:SMB,
author = "Garnett McMillan and Timothy Hanson",
title = "{SAS} Macro {BDM} for Fitting the {Dale} Regression
Model to Bivariate Ordinal Response Data",
journal = j-J-STAT-SOFT,
volume = "14",
number = "2",
pages = "1--12",
day = "1",
month = may,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/counter.php?id=127&url=v14/i02&ct=2;
http://www.jstatsoft.org/counter.php?id=127&url=v14/i02/v14i02.pdf&ct=1",
accepted = "2005-05-01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-05-01",
xxtitle = "{SAS} Macro {BDM} for Fitting the Dale Regression
Model to Bivariate Ordinal Response Data",
}
@Article{Imai:2005:PMR,
author = "Kosuke Imai and David A. {Van Dyk}",
title = "\pkg{MNP}: {R} Package for Fitting the {Multinomial
Probit Model}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "3",
pages = "1--32",
day = "8",
month = may,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=128&url=v14/i03&ct=2;
http://www.jstatsoft.org/counter.php?id=128&url=v14/i03/v14i03.pdf&ct=1",
accepted = "2005-05-08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-05-08",
xxtitle = "{MNP}: R Package for Fitting the Multinomial Probit
Model",
}
@Article{Buttrey:2005:CPL,
author = "Samuel E. Buttrey",
title = "Calling the \pkg{lp\_solve} Linear Program Software
from {R}, {S-PLUS} and {Excel}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "4",
pages = "1--13",
day = "1",
month = may,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=129&url=v14/i04&ct=2;
http://www.jstatsoft.org/counter.php?id=129&url=v14/i04/v14i04.pdf&ct=1",
accepted = "2005-05-01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-05-01",
xxtitle = "Calling the \pkg{lp\_solve} Linear Program Software
from R, {S-PLUS} and {Excel}",
}
@Article{Woodward:2005:BBC,
author = "Phil Woodward",
title = "{BugsXLA}: {Bayes} for the {Common Man}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "5",
pages = "1--18",
day = "31",
month = jan,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=130&url=v14/i05&ct=2;
http://www.jstatsoft.org/counter.php?id=130&url=v14/i05/v14i05.pdf&ct=1",
abstract = "The absence of user-friendly software has long been a
major obstacle to the routine application of Bayesian
methods in business and industry. It will only be
through widespread application of the Bayesian approach
to real problems that issues, such as the use of prior
distributions, can be practically resolved in the same
way that the choice of significance levels has been in
the classical approach; although most Bayesians would
hope for a much more satisfactory resolution. It is
only relatively recently that any general purpose
Bayesian software has been available; by far the most
widely used such package is \pkg{WinBUGS}. Although
this software has been designed to enable an extremely
wide variety of models to be coded relatively easily,
it is unlikely that many will bother to learn the
language and its nuances unless they are already highly
motivated to try Bayesian methods. This paper describes
a graphical user interface, programmed by the author,
which facilitates the specification of a wide class of
generalised linear mixed models for analysis using
WinBUGS. The program, BugsXLA (v2.1), is an Excel
Add-In that not only allows the user to specify a model
as one would in a package such as SAS or S-PLUS, but
also aids the specification of priors and control of
the MCMC run itself. Inevitably, developing a program
such as this forces one to think again about such
issues as choice of default priors, parameterisation
and assessing convergence. I have tried to adopt
currently perceived good practices, but mainly share my
approach so that others can apply it and, through
constructive criticism, play a small part in the
ultimate development of the first Bayesian software
package truly usable by the average data analyst.",
accepted = "2005-01-31",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "Bayesian analysis; GLMM; graphical user interface;
Microsoft Excel; WinBUGS",
submitted = "2005-01-31",
xxtitle = "{BugsXLA}: Bayes for the Common Man",
}
@Article{Zeileis:2005:PZS,
author = "Achim Zeileis and Gabor Grothendieck",
title = "\pkg{zoo}: {S3} Infrastructure for Regular and
Irregular Time Series",
journal = j-J-STAT-SOFT,
volume = "14",
number = "6",
pages = "1--27",
day = "21",
month = may,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=131&url=v14/i06&ct=2;
http://www.jstatsoft.org/counter.php?id=131&url=v14/i06/v14i06.pdf&ct=1",
abstract = "\pkg{zoo} is an R package providing an S3 class with
methods for indexed totally ordered observations, such
as discrete irregular time series. Its key design goals
are independence of a particular index/time/date class
and consistency with base R and the ``\pkg{ts}'' class
for regular time series. This paper describes how these
are achieved within \pkg{zoo} and provides several
illustrations of the available methods for
``\pkg{zoo}'' objects which include plotting, merging
and binding, several mathematical operations,
extracting and replacing data and index, coercion and
NA handling. A subclass ``\pkg{zooreg}'' embeds regular
time series into the ``\pkg{zoo}'' framework and thus
bridges the gap between regular and irregular time
series classes in R.",
accepted = "2005-05-21",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "irregular time series; R; regular time series; S3;
totally ordered observations",
submitted = "2005-04-27",
xxtitle = "zoo: S3 Infrastructure for Regular and Irregular Time
Series",
}
@Article{Terpstra:2005:RBA,
author = "Jeff T. Terpstra and Joseph W. McKean",
title = "Rank-Based Analysis of Linear Models Using {R}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "7",
pages = "1--26",
day = "1",
month = jul,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=132&url=v14/i07&ct=2;
http://www.jstatsoft.org/counter.php?id=132&url=v14/i07/v14i07.pdf&ct=1",
abstract = "It is well-known that Wilcoxon procedures out perform
least squares procedures when the data deviate from
normality and/or contain outliers. These procedures can
be generalized by introducing weights; yielding
so-called weighted Wilcoxon (WW) techniques. In this
paper we demonstrate how WW-estimates can be calculated
using an L1 regression routine. More importantly, we
present a collection of functions that can be used to
implement a robust analysis of a linear model based on
WW-estimates. For instance, estimation, tests of linear
hypotheses, residual analyses, and diagnostics to
detect differences in fits for various weighting
schemes are discussed. We analyze a regression model,
designed experiment, and autoregressive time series
model for the sake of illustration. We have chosen to
implement the suite of functions using the R
statistical software package. Because R is freely
available and runs on multiple platforms, WW-estimation
and associated inference is now universally
accessible.",
accepted = "2005-07-01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "estimation; inference; linear models; R functions;
rank-based procedures; robust; weighted Wilcoxon
estimates",
submitted = "2004-04-06",
xxtitle = "Rank-Based Analyses of Linear Models Using R",
}
@Article{Hin:2005:ACD,
author = "Lin Yee Hin and Vincent Carey",
title = "An Algorithm for Clustered Data Generalized Additive
Modelling with {S-PLUS}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "8",
pages = "1--24",
day = "31",
month = aug,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=133&url=v14/i08&ct=2;
http://www.jstatsoft.org/counter.php?id=133&url=v14/i08/v14i08.pdf&ct=1",
abstract = "We present a set of functions in S-PLUS to implement
the clustered data generalized additive marginal
modelling (CDGAM) strategy proposed by Berhane and
Tibshirani (1998). A variety of working correlation
structures are supported, and the regression basis may
include components from the family of smoothing
splines.",
accepted = "2005-08-31",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "clustered data analysis; generalized estimating
equations",
submitted = "2005-01-27",
xxtitle = "An Algorithm for Clustered Data Generalized Additive
Modelling with S-{PLUS}",
}
@Article{Fox:2005:RCB,
author = "John Fox",
title = "The {R Commander}: a Basic-Statistics Graphical User
Interface to {R}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "9",
pages = "1--42",
day = "19",
month = aug,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=134&url=v14/i09&ct=2;
http://www.jstatsoft.org/counter.php?id=134&url=v14/i09/v14i09.pdf&ct=1",
abstract = "Unlike S-PLUS, R does not incorporate a statistical
graphical user interface (GUI), but it does include
tools for building GUIs. Based on the \pkg{tcltk}
package (which furnishes an interface to the Tcl/Tk GUI
toolkit), the \pkg{Rcmdr} package provides a
basic-statistics graphical user interface to R called
the R Commander. The design objectives of the R
Commander were as follows: to support, through an
easy-to-use, extensible, crossplatform GUI, the
statistical functionality required for a
basic-statistics course (though its current
functionality has grown to include support for linear
and generalized-linear models, and other more advanced
features); to make it relatively di cult to do
unreasonable things; and to render visible the
relationship between choices made in the GUI and the R
commands that they generate. The R Commander uses a
simple and familiar menu/dialog-box interface.
Top-level menus include File, Edit, Data, Statistics,
Graphs, Models, Distributions, Tools, and Help, with
the complete menu tree given in the paper. Each dialog
box includes a Help button, which leads to a relevant
help page. Menu and dialog-box selections generate R
commands, which are recorded in a script window and are
echoed, along with output, to an output window. The
script window also provides the ability to edit, enter,
and re-execute commands. Error messages, warnings, and
some other information appear in a separate messages
window. Data sets in the R Commander are simply R data
frames, and can be read from attached packages or
imported from files. Although several data frames may
reside in memory, only one is active at any given time.
There may also be an active statistical model (e.g., an
R lm or glm object). The purpose of this paper is to
introduce and describe the use of the R Commander GUI;
to describe the design and development of the R
Commander; and to explain how the R Commander GUI can
be extended. The second part of the paper (following a
brief introduction) can serve as an introductory guide
for students who will use the R Commander",
accepted = "2005-08-19",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "R language; statistical education; statistical GUI;
statistical software",
submitted = "2004-07-22",
xxtitle = "The R Commander: A Basic-Statistics Graphical User
Interface to R",
}
@Article{Karlis:2005:BPD,
author = "Dimitris Karlis and Ioannis Ntzoufras",
title = "Bivariate {Poisson} and Diagonal Inflated Bivariate
{Poisson} Regression Models in {R}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "10",
pages = "1--36",
day = "5",
month = sep,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=135&url=v14/i10&ct=2;
http://www.jstatsoft.org/counter.php?id=135&url=v14/i10/v14i10.pdf&ct=1",
abstract = "In this paper we present an R package called
\pkg{bivpois} for maximum likelihood estimation of the
parameters of bivariate and diagonal inflated bivariate
Poisson regression models. An Expectation-Maximization
(EM) algorithm is implemented. Inflated models allow
for modelling both over-dispersion (or
under-dispersion) and negative correlation and thus
they are appropriate for a wide range of applications.
Extensions of the algorithms for several other models
are also discussed. Detailed guidance and
implementation on simulated and real data sets using
\pkg{bivpois} package is provided.",
accepted = "2005-09-05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "bivariate Poisson distribution; EM algorithm;
multivariate count data; R functions; zero and diagonal
inflated models",
submitted = "2003-11-14",
xxtitle = "Bivariate Poisson and Diagonal Inflated Bivariate
Poisson Regression Models in R",
}
@Article{Brezger:2005:BAB,
author = "Andreas Brezger and Thomas Kneib and Stefan Lang",
title = "{BayesX}: Analyzing {Bayesian} Structural Additive
Regression Models",
journal = j-J-STAT-SOFT,
volume = "14",
number = "11",
pages = "1--22",
day = "9",
month = sep,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=136&url=v14/i11&ct=2;
http://www.jstatsoft.org/counter.php?id=136&url=v14/i11/v14i11.pdf&ct=1",
abstract = "There has been much recent interest in Bayesian
inference for generalized additive and related models.
The increasing popularity of Bayesian methods for these
and other model classes is mainly caused by the
introduction of Markov chain Monte Carlo (MCMC)
simulation techniques which allow realistic modeling of
complex problems. This paper describes the capabilities
of the free software package \pkg{BayesX} for
estimating regression models with structured additive
predictor based on MCMC inference. The program extends
the capabilities of existing software for
semiparametric regression included in S-PLUS, SAS, R or
Stata. Many model classes well known from the
literature are special cases of the models supported by
BayesX. Examples are generalized additive (mixed)
models, dynamic models, varying coefficient models,
geoadditive models, geographically weighted regression
and models for space-time regression. BayesX supports
the most common distributions for the response
variable. For univariate responses these are Gaussian,
Binomial, Poisson, Gamma, negative Binomial, zero
inflated Poisson and zero inflated negative binomial.
For multicategorical responses, both multinomial logit
and probit models for unordered categories of the
response as well as cumulative threshold models for
ordered categories can be estimated. Moreover, BayesX
allows the estimation of complex continuous time
survival and hazard rate models.",
accepted = "2005-09-09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "geoadditive models; MCMC; mixed models; space-time
regression; structured additive regression",
submitted = "2004-06-18",
xxtitle = "{BayesX}: Analyzing Bayesian Structured Additive
Regression Models",
}
@Article{Hornik:2005:CCE,
author = "Kurt Hornik",
title = "A {CLUE} for {CLUster Ensembles}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "12",
pages = "1--25",
day = "20",
month = sep,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=137&url=v14/i12&ct=2;
http://www.jstatsoft.org/counter.php?id=137&url=v14/i12/v14i12.pdf&ct=1",
abstract = "Cluster ensembles are collections of individual
solutions to a given clustering problem which are
useful or necessary to consider in a wide range of
applications. The R package \pkg{clue} provides an
extensible computational environment for creating and
analyzing cluster ensembles, with basic data structures
for representing partitions and hierarchies, and
facilities for computing on these, including methods
for measuring proximity and obtaining consensus and
secondary clusterings.",
accepted = "2005-09-20",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "cluster ensembles; cluster proximities; consensus
clusterings; hierarchies; partitions; secondary
clusterings",
submitted = "2005-05-13",
xxtitle = "A {CLUE} for {CLUster} Ensembles",
}
@Article{Marsaglia:2005:MGF,
author = "George Marsaglia",
title = "Monkeying with the Goodness-of-Fit Test",
journal = j-J-STAT-SOFT,
volume = "14",
number = "13",
pages = "1--4",
day = "20",
month = sep,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=138&url=v14/i13&ct=2;
http://www.jstatsoft.org/counter.php?id=138&url=v14/i13/v14i13.pdf&ct=1",
abstract = "The familiar $ \sum P(\textrm {OBS} - \textrm {EXP})^2
/ \textrm {EXP} $ goodness-of-fit measure is commonly
used to test whether an observed sequence came from the
realization of $n$ independent identically distributed
(iid) discrete random variables. It can be quite
effective for testing for identical distribution, but
is not suited for assessing independence, as it pays no
attention to the order in which output values are
received.\par
This note reviews a way to adjust or tamper, that is,
monkey-with the classical test to make it test for
independence as well as identical distribution in
short, to test for both the i's in iid, using monkey
tests similar to those in the Diehard Battery of Tests
of Randomness (Marsaglia 1995).",
accepted = "2005-09-20",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "$\chi^2$; goodness of fit; monkey tests; overlapping
m-tuples",
submitted = "2005-05-01",
xxtitle = "Monkeying with the Goodness-of-Fit Test",
}
@Article{Crainiceanu:2005:BAP,
author = "Ciprian M. Crainiceanu and David Ruppert and Matthew
P. Wand",
title = "{Bayesian} Analysis for Penalized Spline Regression
Using {WinBUGS}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "14",
pages = "1--24",
day = "29",
month = sep,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i14",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=139&url=v14/i14&ct=2;
http://www.jstatsoft.org/counter.php?id=139&url=v14/i14/v14i14.pdf&ct=1",
abstract = "Penalized splines can be viewed as BLUPs in a mixed
model framework, which allows the use of mixed model
software for smoothing. Thus, software originally
developed for Bayesian analysis of mixed models can be
used for penalized spline regression. Bayesian
inference for nonparametric models enjoys the
flexibility of nonparametric models and the exact
inference provided by the Bayesian inferential
machinery. This paper provides a simple, yet
comprehensive, set of programs for the implementation
of nonparametric Bayesian analysis in WinBUGS. Good
mixing properties of the MCMC chains are obtained by
using low-rank thin-plate splines, while simulation
times per iteration are reduced employing WinBUGS
specific computational tricks.",
accepted = "2005-09-29",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "MCMC; semiparametric regression",
submitted = "2004-03-18",
xxtitle = "Bayesian Analysis for Penalized Spline Regression
Using {WinBUGS}",
}
@Article{Hahsler:2005:PAC,
author = "Michael Hahsler and Bettina Gr{\"u}n and Kurt Hornik",
title = "\pkg{arules} --- a Computational Environment for
Mining Association Rules and Frequent Item Sets",
journal = j-J-STAT-SOFT,
volume = "14",
number = "15",
pages = "1--25",
day = "29",
month = sep,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i15",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/counter.php?id=140&url=v14/i15&ct=2;
http://www.jstatsoft.org/counter.php?id=140&url=v14/i15/v14i15.pdf&ct=1",
abstract = "Mining frequent itemsets and association rules is a
popular and well researched approach for discovering
interesting relationships between variables in large
databases. The R package \pkg{arules} presented in this
paper provides a basic infrastructure for creating and
manipulating input data sets and for analyzing the
resulting itemsets and rules. The package also includes
interfaces to two fast mining algorithms, the popular C
implementations of Apriori and Eclat by Christian
Borgelt. These algorithms can be used to mine frequent
itemsets, maximal frequent itemsets, closed frequent
itemsets and association rules.",
accepted = "2005-09-29",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "association rules; data mining; frequent itemsets;
R.",
submitted = "2005-04-15",
xxtitle = "arules - A Computational Environment for Mining
Association Rules and Frequent Item Sets",
}
@Article{Hankin:2005:IBR,
author = "Robin K. S. Hankin",
title = "Introducing {BACCO}, an {R} Bundle for {Bayesian}
Analysis of Computer Code Output",
journal = j-J-STAT-SOFT,
volume = "14",
number = "16",
pages = "1--21",
day = "19",
month = oct,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i16",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=141&url=v14/i16&ct=2;
http://www.jstatsoft.org/counter.php?id=141&url=v14/i16/v14i16.pdf&ct=1",
abstract = "This paper introduces the BACCO bundle of R routines
for carrying out Bayesian analysis of computer code
output. The bundle comprises packages \pkg{emulator}
and \pkg{calibrator}, computerized implementations of
the ideas of Oakley and O Hagan (2002) and Kennedy and
O Hagan (2001a) respectively. The bundle is
self-contained and fully documented R code, and
includes a toy dataset that furnishes a working example
of the functions.\par
Package \pkg{emulator} carries out Bayesian emulation
of computer code output; package \pkg{calibrator}
allows the incorporation of observational data into
model calibration using Bayesian techniques.\par
The package is then applied to a dataset taken from
climate science.",
accepted = "2005-10-19",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "Bayesian analysis; climate modelling; uncertainty in
climate prediction",
submitted = "2005-06-09",
xxtitle = "Introducing {BACCO}, an R Bundle for Bayesian Analysis
of Computer Code Output",
}
@Article{Dethlefsen:2005:CPG,
author = "Claus Dethlefsen and S{\o}ren H{\o}jsgaard",
title = "A Common Platform for Graphical Models in {R}: The
{gRbase} Package",
journal = j-J-STAT-SOFT,
volume = "14",
number = "17",
pages = "1--12",
day = "3",
month = dec,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i17",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=142&url=v14/i17&ct=2;
http://www.jstatsoft.org/counter.php?id=142&url=v14/i17/v14i17.pdf&ct=1",
abstract = "The \pkg{gRbase} package is intended to set the
framework for computer packages for data analysis using
graphical models. The \pkg{gRbase} package is developed
for the open source language, R, and is available for
several platforms. The package is intended to be widely
extendible and flexible so that package developers may
implement further types of graphical models using the
available methods.\par
The \pkg{gRbase} package consists of a set of S version
3 classes and associated methods for representing data
and models. The package is linked to the
\pkg{dynamicGraph} package (Badsberg 2005), an
interactive graphical user interface for manipulating
graphs.\par
In this paper, we show how these building blocks can be
combined and integrated with inference engines in the
special cases of hierarchical log-linear models. We
also illustrate how to extend the package to deal with
other types of graphical models, in this case the
graphical Gaussian models.",
accepted = "2005-12-03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "",
submitted = "2005-08-10",
xxtitle = "A Common Platform for Graphical Models in R: The
{gRbase} Package",
}
@Article{Dejean:2005:FRP,
author = "S{\'e}bastien D{\'e}jean and Serge Cohen",
title = "{FracSim}: An {R} Package to Simulate Multifractional
{L{\'e}vy} Motions",
journal = j-J-STAT-SOFT,
volume = "14",
number = "18",
pages = "1--19",
month = dec,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v014.i18",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/i18",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-06; Accepted 2005-12-08",
xxtitle = "{FracSim}: An R Package to Simulate Multifractional
L{\'e}vy Motions",
}
@Article{Newson:2005:ECJ,
author = "Roger Newson",
title = "Efficient Calculation of Jackknife Confidence
Intervals for Rank Statistics",
journal = j-J-STAT-SOFT,
volume = "15",
number = "1",
pages = "1--10",
month = dec,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v15/i01",
abstract = "An algorithm is presented for calculating
concordance-discordance totals in a time of order $ N
\log N $, where $N$ is the number of observations,
using a balanced binary search tree. These totals can
be used to calculate jackknife estimates and confidence
limits in the same time order for a very wide range of
rank statistics, including Kendall's $ \tau $, Somers'
$D$, Harrell's $c$, the area under the receiver
operating characteristic (ROC) curve, the Gini
coefficient, and the parameters underlying the sign and
rank-sum tests. A Stata package is introduced for
calculating confidence intervals for these rank
statistics using this algorithm, which has been
implemented in the Mata compilable matrix programming
language supplied with Stata",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-08-24; Accepted 2005-12-16",
xxtitle = "Efficient Calculation of Jackknife Confidence
Intervals for Rank Statistics",
xxyear = "2006",
}
@Article{Smith:2005:JES,
author = "Christina D. Smith and Jeffrey S. Pontius",
title = "Jackknife Estimator of Species Richness with
{S-PLUS}",
journal = j-J-STAT-SOFT,
volume = "15",
number = "3",
pages = "1--12",
month = dec,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i03",
abstract = "An estimate of the number of species, $S$, usually
called species richness by ecologists, in an area is
one of the basic statistics used to ascertain
biological diversity. Traditionally ecologists have
used the number of species observed in a sample, $
S_0$, to estimate $S$, realizing that $ S_0$ is a lower
bound for $S$. One alternative to $ S_0$ is to use a
nonparametric procedure such as jackknife resampling.
For species richness, a closed form of the jackknife
estimator is available. Typically statistical software
contains only the traditional iterative form of the
jackknife estimator. The purpose of this article is to
propose an S-PLUS function for calculating the
noniterative first order jackknife estimator of species
richness and some associated plots and statistics.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2004-09-30; Accepted 2005-12-05",
xxtitle = "Jackknife Estimator of Species Richness with
S-{PLUS}",
xxyear = "2006",
}
@Article{Stoll:2005:WRS,
author = "Heather Stoll and Gary King and Langche Zeng",
title = "{WhatIf}: {R} Software for Evaluating
Counterfactuals",
journal = j-J-STAT-SOFT,
volume = "15",
number = "4",
pages = "1--18",
month = dec,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i04",
abstract = "WhatIf is an R package that implements the methods for
evaluating counterfactuals introduced in King and Zeng
(2006a) and King and Zeng (2006b). It offers
easy-to-use techniques for assessing a counterfactual's
model dependence without having to conduct sensitivity
testing over specified classes of models. These same
methods can be used to approximate the common support
of the treatment and control groups in causal
inference.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-11-09; Accepted 2005-12-10",
xxtitle = "{WhatIf}: R Software for Evaluating Counterfactuals",
xxyear = "2006",
}
@Article{Knoke:2005:ARM,
author = "James D. Knoke and Christy M. Anderson and Gary G.
Koch",
title = "Analyzing Repeated Measures Marginal Models on Sample
Surveys with Resampling Methods",
journal = j-J-STAT-SOFT,
volume = "15",
number = "8",
pages = "1--13",
month = dec,
year = "2005",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v15/i08",
abstract = "Packaged statistical software for analyzing
categorical, repeated measures marginal models on
sample survey data with binary covariates does not
appear to be available. Consequently, this report
describes a customized SAS program which accomplishes
such an analysis on survey data with jackknifed
replicate weights for which the primary sampling unit
information has been suppressed for respondent
confidentiality. First, the program employs the Macro
Language and the Output Delivery System (ODS) to
estimate the means and covariances of indicator
variables for the response variables, taking the design
into account. Then, it uses PROC CATMOD and ODS,
ignoring the survey design, to obtain the design matrix
and hypothesis test specifications. Finally, it enters
these results into another run of CATMOD, which
performs automated direct input of the survey design
specifications and accomplishes the appropriate
analysis. This customized SAS program can be employed,
with minor editing, to analyze general categorical,
repeated measures marginal models on sample surveys
with replicate weights. Finally, the results of our
analysis accounting for the survey design are compared
to the results of two alternate analyses of the same
data. This comparison confirms that such alternate
analyses, which do not properly account for the design,
do not produce useful results.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-09-12; Accepted 2005-12-14",
xxtitle = "Analyzing Repeated Measures Marginal Models on Sample
Surveys with Resampling Methods",
xxyear = "2006",
}
@Article{Halekoh:2006:RPP,
author = "Ulrich Halekoh and S{\o}ren H{\o}jsgaard and Jun Yan",
title = "The {R} Package \pkg{geepack} for Generalized
Estimating Equations",
journal = j-J-STAT-SOFT,
volume = "15",
number = "2",
pages = "1--11",
month = jan,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i02",
abstract = "This paper describes the core features of the R
package \pkg{geepack}, which implements the generalized
estimating equations (GEE) approach for fitting
marginal generalized linear models to clustered data.
Clustered data arise in many applications such as
longitudinal data and repeated measures. The GEE
approach focuses on models for the mean of the
correlated observations within clusters without fully
specifying the joint distribution of the observations.
It has been widely used in statistical practice. This
paper illustrates the application of the GEE approach
with \pkg{geepack} through an example of clustered
binary data.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-06-17; Accepted 2005-12-22",
}
@Article{Tanimura:2006:PSM,
author = "Susumu Tanimura and Chusi Kuroiwa and Tsutomu Mizota",
title = "Proportional Symbol Mapping in {R}",
journal = j-J-STAT-SOFT,
volume = "15",
number = "5",
pages = "1--7",
month = jan,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i05",
abstract = "Visualization of spatial data on a map aids not only
in data exploration but also in communication to impart
spatial conception or ideas to others. Although recent
cartographic functions in R are rapidly becoming
richer, proportional symbol mapping, which is one of
the common mapping approaches, has not been packaged
thus far. Based on the theories of proportional symbol
mapping developed in cartography, the authors developed
some functions for proportional symbol mapping using R,
including mathematical and perceptual scaling. An
example of these functions demonstrated the new
expressive power and options available in R,
particularly for the visualization of conceptual point
data.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-02; Accepted 2006-01-24",
xxtitle = "Proportional Symbol Mapping in R",
}
@Article{Marchetti:2006:IIG,
author = "Giovanni M. Marchetti",
title = "Independencies Induced from a Graphical {Markov} Model
After Marginalization and Conditioning: The {R} Package
\pkg{ggm}",
journal = j-J-STAT-SOFT,
volume = "15",
number = "6",
pages = "1--15",
month = feb,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i06",
abstract = "We describe some functions in the R package \pkg{ggm}
to derive from a given Markov model, represented by a
directed acyclic graph, different types of graphs
induced after marginalizing over and conditioning on
some of the variables. The package has a few basic
functions that find the essential graph, the induced
concentration and covariance graphs, and several types
of chain graphs implied by the directed acyclic graph
(DAG) after grouping and reordering the variables.
These functions can be useful to explore the impact of
latent variables or of selection effects on a chosen
data generating model.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-06-21; Accepted 2006-02-08",
xxtitle = "Independencies Induced from a Graphical Markov Model
after Marginalization and Conditioning: The R Package
ggm",
}
@Article{Hankin:2006:IPE,
author = "Robin K. S. Hankin",
title = "Introducing \pkg{elliptic}, an {R} Package for
Elliptic and Modular Functions",
journal = j-J-STAT-SOFT,
volume = "15",
number = "7",
pages = "1--22",
month = jan,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i07",
abstract = "This paper introduces the \pkg{elliptic} package of R
routines, for numerical calculation of elliptic and
related functions. Elliptic functions furnish
interesting and instructive examples of many ideas of
complex analysis, and the package illustrates these
numerically and visually. A statistical application in
fluid mechanics is presented.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-07-13; Accepted 2006-01-18",
xxtitle = "Introducing elliptic, an R Package for Elliptic and
Modular Functions",
}
@Article{Karatzoglou:2006:SVM,
author = "Alexandros Karatzoglou and David Meyer and Kurt
Hornik",
title = "Support Vector Machines in {R}",
journal = j-J-STAT-SOFT,
volume = "15",
number = "9",
pages = "1--28",
month = apr,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i09",
abstract = "Being among the most popular and efficient
classification and regression methods currently
available, implementations of support vector machines
exist in almost every popular programming language.
Currently four R packages contain SVM related software.
The purpose of this paper is to present and compare
these implementations.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-24; Accepted 2006-04-06",
xxtitle = "Support Vector Machines in R",
}
@Article{Kim:2006:CRP,
author = "Donghoh Kim and Hee-Seok Oh",
title = "{CVTresh}: {R} Package for Level-Dependent
Cross-Validation Thresholding",
journal = j-J-STAT-SOFT,
volume = "15",
number = "10",
pages = "1--13",
month = apr,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i10",
abstract = "The core of the wavelet approach to nonparametric
regression is thresholding of wavelet coefficients.
This paper reviews a cross-validation method for the
selection of the thresholding value in wavelet
shrinkage of Oh, Kim, and Lee (2006), and introduces
the R package CVThresh implementing details of the
calculations for the procedures.\par
This procedure is implemented by coupling a
conventional cross-validation with a fast imputation
method, so that it overcomes a limitation of data
length, a power of 2. It can be easily applied to the
classical leave-one-out cross-validation and K-fold
cross-validation. Since the procedure is
computationally fast, a level-dependent
cross-validation can be developed for wavelet shrinkage
of data with various sparseness according to levels.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-08-22; Accepted 2006-04-08",
xxtitle = "{CVThresh}: R Package for Level-Dependent
Cross-Validation Thresholding",
}
@Article{Elam:2006:CPC,
author = "Matthew E. Elam and Kenneth E. Case",
title = "A Computer Program to Calculate Two-Stage Short-Run
Control Chart Factors for ({X, MR}) Charts",
journal = j-J-STAT-SOFT,
volume = "15",
number = "11",
pages = "1--13",
month = apr,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v15/i11",
abstract = "This paper is the second in a series of two papers
that fully develops two-stage short-run (X, MR) control
charts. This paper describes the development and
execution of a computer program that accurately
calculates first- and second-stage short-run control
chart factors for (X, MR) charts using the equations
derived in the first paper. The software used is
Mathcad. The program accepts values for number of
subgroups, $ \alpha $ for the X chart, and $ \alpha $
for the MR chart both above the upper control limit and
below the lower control limit. Tables are generated for
specific values of these inputs and the implications of
the results are discussed. A numerical example
illustrates the use of the program.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-19; Accepted 2005-04-13",
xxtitle = "A Computer Program to Calculate Two-Stage Short-Run
Control Chart Factors for ( X, {MR} ) Charts",
}
@Article{Dastidar:2006:GSP,
author = "Surajit Ghosh Dastidar",
title = "{Gompertz}: a {Scilab} Program for Estimating
{Gompertz} Curve Using {Gauss--Newton} Method of Least
Squares",
journal = j-J-STAT-SOFT,
volume = "15",
number = "12",
pages = "1--12",
month = apr,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v015.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v15/i12",
abstract = "A computer program for estimating Gompertz curve using
Gauss0-Newton method of least squares is described in
detail. It is based on the estimation technique
proposed in Reddy (1985). The program is developed
using Scilab (version 3.1.1), a freely available
scientific software package that can be downloaded from
\path=http://www.scilab.org/=. Data is to be fed into
the program from an external disk file which should be
in Microsoft Excel format. The output will contain
sample size, tolerance limit, a list of initial as well
as the final estimate of the parameters, standard
errors, value of Gauss-Normal equations namely $ G N_1
$, $ G N_2 $, and $ G N_3 $, No. of iterations,
variance ($ \sigma^2$), Durbin-Watson statistic,
goodness of fit measures such as $ R^2$, $D$ value,
covariance matrix and residuals. It also displays a
graphical output of the estimated curve vis a vis the
observed curve. It is an improved version of the
program proposed in Dastidar (2005).",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-08-29; Accepted 2006-04-13",
xxtitle = "Gompertz: A Scilab Program for Estimating Gompertz
Curve Using Gauss-Newton Method of Least Squares",
}
@Article{Xu:2006:BRD,
author = "Hongquan Xu",
title = "Book Review: {{\booktitle{Discovering Knowledge in
Data: An Introduction to Data Mining}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-1",
pages = "1--2",
month = may,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-05-22; Accepted 2006-05-22",
}
@Article{deLeeuw:2006:BRB,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Robust Statistical Methods
with R}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-2",
pages = "1--2",
month = jul,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-07; Accepted 2006-07-07",
}
@Article{Maindonald:2006:BRB,
author = "John Maindonald",
title = "Book Review: {{\booktitle{Generalized Additive Models:
An Introduction with R}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-3",
pages = "1--2",
month = jul,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-12; Accepted 2006-07-12",
}
@Article{Sanchez:2006:BRB,
author = "Juana Sanchez",
title = "Book Review: {{\booktitle{Handbook of Univariate and
Multivariate Data Analysis and Interpretation with
SPSS}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-4",
pages = "1--3",
month = jul,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.b04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-19; Accepted 2006-07-19",
}
@Article{Sparapani:2006:BRB,
author = "Rodney Sparapani",
title = "Book Review: {{\booktitle{Statistical Analysis of
Medical Data Using SAS}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-5",
pages = "1--5",
month = jul,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.b05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-26; Accepted 2006-07-26",
}
@Article{Hilbe:2006:BRB,
author = "Joseph Hilbe",
title = "Book Review: {{\booktitle{A Handbook of Statistical
Analyses Using R}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-6",
pages = "1--6",
month = aug,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.b06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-08-12; Accepted 2006-08-12",
}
@Article{Bullard:2006:BRB,
author = "James Bullard",
title = "Book Review: {{\booktitle{R Graphics}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-7",
pages = "1--3",
month = oct,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.b07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/b07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-11; Accepted 2006-10-11",
}
@Article{Hankin:2006:CSA,
author = "Robin K. S. Hankin",
title = "Code Snippet: Additive Integer Partitions in {R}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "CS-1",
pages = "1--3",
month = may,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-04-27; Accepted 2006-05-17",
}
@Article{Nadarajah:2006:CSR,
author = "Saralees Nadarajah and Samuel Kotz",
title = "Code Snippet: {R} Programs for Truncated
Distributions",
journal = j-J-STAT-SOFT,
volume = "16",
number = "CS-2",
pages = "1--8",
month = aug,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.c02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-06-06; Accepted 2006-08-17",
}
@Article{Shin:2006:CSL,
author = "Ji-Hyung Shin and Sigal Blay and Brad McNeney and
Jinko Graham",
title = "Code Snippet: {LDheatmap}: An {R} Function for
Graphical Display of Pairwise Linkage Disequilibria
Between Single Nucleotide Polymorphisms",
journal = j-J-STAT-SOFT,
volume = "16",
number = "CS-3",
pages = "1--9",
month = sep,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.c03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/c03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-05-15; Accepted 2006-09-20",
}
@Article{Dethlefsen:2006:FSS,
author = "Claus Dethlefsen and S{\o}ren Lundbye-Christensen",
title = "Formulating State Space Models in {R} with Focus on
Longitudinal Regression Models",
journal = j-J-STAT-SOFT,
volume = "16",
number = "1",
pages = "1--15",
month = apr,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/i01",
abstract = "We provide a language for formulating a range of state
space models with response densities within the
exponential family. The described methodology is
implemented in the R-package sspir. A state space model
is specified similarly to a generalized linear model in
R, and then the time-varying terms are marked in the
formula. Special functions for specifying polynomial
time trends, harmonic seasonal patterns, unstructured
seasonal patterns and time-varying covariates can be
used in the formula. The model is fitted to data using
iterated extended Kalman filtering, but the formulation
of models does not depend on the implemented method of
inference. The package is demonstrated on three
datasets.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-05-25; Accepted 2006-04-26",
xxtitle = "Formulating State Space Models in R with Focus on
Longitudinal Regression Models",
}
@Article{Burkett:2006:HSL,
author = "Kelly Burkett and Jinko Graham and Brad McNeney",
title = "\pkg{hapassoc}: Software for Likelihood Inference of
Trait Associations with {SNP} Haplotypes and Other
Attributes",
journal = j-J-STAT-SOFT,
volume = "16",
number = "2",
pages = "1--19",
month = apr,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/i02",
abstract = "Complex medical disorders, such as heart disease and
diabetes, are thought to involve a number of genes
which act in conjunction with lifestyle and
environmental factors to increase disease
susceptibility. Associations between complex traits and
single nucleotide polymorphisms (SNPs) in candidate
genomic regions can provide a useful tool for
identifying genetic risk factors. However, analysis of
trait associations with single SNPs ignores the
potential for extra information from haplotypes,
combinations of variants at multiple SNPs along a
chromosome inherited from a parent. When
haplotype-trait associations are of interest and
haplotypes of individuals can be determined,
generalized linear models (GLMs) may be used to
investigate haplotype associations while adjusting for
the effects of non-genetic cofactors or attributes.
Unfortunately, haplotypes cannot always be determined
cost-effectively when data is collected on unrelated
subjects. Uncertain haplotypes may be inferred on the
basis of data from single SNPs. However, subsequent
analyses of risk factors must account for the resulting
uncertainty in haplotype assignment in order to avoid
potential errors in interpretation. To account for such
uncertainty, we have developed \pkg{hapassoc}, software
for R implementing a likelihood approach to inference
of haplotype and non-genetic effects in GLMs of trait
associations. We provide a description of the
underlying statistical method and illustrate the use of
\pkg{hapassoc} with examples that highlight the
flexibility to specify dominant and recessive effects
of genetic risk factors, a feature not shared by other
software that restricts users to additive effects only.
Additionally, \pkg{hapassoc} can accommodate missing
SNP genotypes for limited numbers of subjects.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-20; Accepted 2006-04-26",
xxtitle = "hapassoc: Software for Likelihood Inference of Trait
Associations with {SNP} Haplotypes and Other
Attributes",
}
@Article{McBane:2006:PCD,
author = "George C. McBane",
title = "Programs to Compute Distribution Functions and
Critical Values for Extreme Value Ratios for Outlier
Detection",
journal = j-J-STAT-SOFT,
volume = "16",
number = "3",
pages = "1--9",
month = may,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/i03",
abstract = "A set of FORTRAN subprograms is presented to compute
density and cumulative distribution functions and
critical values for the range ratio statistics of Dixon
(1951, The Annals of Mathematical Statistics ) These
statistics are useful for detection of outliers in
small samples.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-01-09; Accepted 2006-05-04",
xxtitle = "Programs to Compute Distribution Functions and
Critical Values for Extreme Value Ratios for Outlier
Detection",
}
@Article{Marsaglia:2006:RNV,
author = "George Marsaglia",
title = "Ratios of Normal Variables",
journal = j-J-STAT-SOFT,
volume = "16",
number = "4",
pages = "1--10",
month = may,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/i04",
abstract = "This article extends and amplifies on results from a
paper of over forty years ago. It provides software for
evaluating the density and distribution functions of
the ratio $ z / w $ for any two jointly normal variates
$z$, $w$, and provides details on methods for
transforming a general ratio $ z / w$ into a standard
form, $ (a + x) / (b + y)$, with $x$ and $y$
independent standard normal and $a$, $b$ non-negative
constants. It discusses handling general ratios when,
in theory, none of the moments exist yet practical
considerations suggest there should be approximations
whose adequacy can be verified by means of the included
software. These approximations show that many of the
ratios of normal variates encountered in practice can
themselves be taken as normally distributed. A
practical rule is developed: If $ a < 2.256$ and $ 4 <
b$ then the ratio $ (a + x) / (b + y)$ is itself
approximately normally distributed with mean $ \mu = a
/ (1.01 b - 0.2713)$ and variance $ \sigma^2 = (a^2 +
1) / (b^2 + 0.108 b - 3.795) \mu^2$.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-03-07; Accepted 2006-05-11",
xxtitle = "Ratios of Normal Variables",
}
@Article{Nevalainen:2006:SIM,
author = "Jaakko Nevalainen and Hannu Oja",
title = "{SAS\slash IML} Macros for a Multivariate Analysis of
Variance Based on Spatial Signs",
journal = j-J-STAT-SOFT,
volume = "16",
number = "5",
pages = "1--17",
month = may,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v16/i05",
abstract = "Recently, new nonparametric multivariate extensions of
the univariate sign methods have been proposed. Randles
(2000) introduced an affine invariant multivariate sign
test for the multivariate location problem. Later on,
Hettmansperger and Randles (2002) considered an affine
equivariant multivariate median corresponding to this
test. The new methods have promising efficiency and
robustness properties. In this paper, we review these
developments and compare them with the classical
multivariate analysis of variance model. A new SAS/IML
tool for performing a spatial sign based multivariate
analysis of variance is introduced.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2004-11-23; Accepted 2006-05-17",
xxtitle = "{SAS}/{IML} Macros for a Multivariate Analysis of
Variance Based on Spatial Signs",
}
@Article{Husing:2006:ARA,
author = "Johannes H{\"u}sing",
title = "An Accept-and-Reject Algorithm to Sample from a Set of
Permutations Restricted by a Time Constraint",
journal = j-J-STAT-SOFT,
volume = "16",
number = "6",
pages = "1--17",
month = may,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/i06",
abstract = "A modification of an accept-and-reject algorithm to
sample from a set of restricted permutations is
proposed. By concentrating on a special class of
matrices obtained by restriction of the permutation in
time, assuming the objects to be permuted to be events
in time, the modified algorithm's running time can be
shown to be linear instead of geometric in the number
of elements. The implementation of the algorithm in the
language R is presented in a Literate Programming
style.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-04-11; Accepted 2006-05-16",
xxtitle = "An Accept-and-Reject Algorithm to Sample from a Set of
Permutations Restricted by a Time Constraint",
}
@Article{Moon:2006:CTT,
author = "Hojin Moon and Hongshik Ahn and Ralph L. Kodell",
title = "A Computational Tool for Testing Dose-related Trend
Using an Age-adjusted Bootstrap-based Poly-$k$ Test",
journal = j-J-STAT-SOFT,
volume = "16",
number = "7",
pages = "1--14",
month = aug,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/i07",
abstract = "A computational tool for testing for a dose-related
trend and/or a pairwise difference in the incidence of
an occult tumor via an age-adjusted bootstrap-based
poly-k test and the original poly-k test is presented
in this paper. The poly-k test (Bailer and Portier
1988) is a survival-adjusted Cochran-Armitage test,
which achieves robustness to effects of differential
mortality across dose groups. The original poly-k test
is asymptotically standard normal under the null
hypothesis. However, the asymptotic normality is not
valid if there is a deviation from the tumor onset
distribution that is assumed in this test. Our
age-adjusted bootstrap-based poly-k test assesses the
significance of assumed asymptotic normal tests and
investigates an empirical distribution of the original
poly-k test statistic using an age-adjusted bootstrap
method. A tumor of interest is an occult tumor for
which the time to onset is not directly observable.
Since most of the animal carcinogenicity studies are
designed with a single terminal sacrifice, the present
tool is applicable to rodent tumorigenicity assays that
have a single terminal sacrifice. The present tool
takes input information simply from a user screen and
reports testing results back to the screen through a
user-interface. The computational tool is implemented
in C/C++ and is applied to analyze a real data set as
an example. Our tool enables the FDA and the
pharmaceutical industry to implement a statistical
analysis of tumorigenicity data from animal bioassays
via our age-adjusted bootstrap-based poly-k test and
the original poly-k test which has been adopted by the
National Toxicology Program as its standard statistical
test.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2004-11-16; Accepted 2006-08-04",
}
@Article{Monahan:2006:SAC,
author = "John F. Monahan",
title = "Some Algorithms for the Conditional Mean Vector and
Covariance Matrix",
journal = j-J-STAT-SOFT,
volume = "16",
number = "8",
pages = "1--9",
month = aug,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/i08",
abstract = "We consider here the problem of computing the mean
vector and covariance matrix for a conditional normal
distribution, considering especially a sequence of
problems where the conditioning variables are changing.
The sweep operator provides one simple general approach
that is easy to implement and update. A second, more
goal-oriented general method avoids explicit
computation of the vector and matrix, while enabling
easy evaluation of the conditional density for
likelihood computation or easy generation from the
conditional distribution. The covariance structure that
arises from the special case of an ARMA(p, q) time
series can be exploited for substantial improvements in
computational efficiency.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-01; Accepted 2006-08-24",
xxtitle = "Some Algorithms for the Conditional Mean Vector and
Covariance Matrix",
}
@Article{Zeileis:2006:OOC,
author = "Achim Zeileis",
title = "Object-oriented Computation of Sandwich Estimators",
journal = j-J-STAT-SOFT,
volume = "16",
number = "9",
pages = "1--16",
month = aug,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/i09",
abstract = "Sandwich covariance matrix estimators are a popular
tool in applied regression modeling for performing
inference that is robust to certain types of model
misspecification. Suitable implementations are
available in the R system for statistical computing for
certain model fitting functions only (in particular
{\tt lm()}), but not for other standard regression
functions, such as {\tt glm()}, {\tt nls()}, or {\tt
survreg()}. Therefore, conceptual tools and their
translation to computational tools in the package
sandwich are discussed, enabling the computation of
sandwich estimators in general parametric models.
Object orientation can be achieved by providing a few
extractor functions' most importantly for the empirical
estimating functions' from which various types of
sandwich estimators can be computed.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-05-26; Accepted 2006-08-15",
xxtitle = "Object-Oriented Computation of Sandwich Estimators",
}
@Article{Schrepp:2006:IPC,
author = "Martin Schrepp",
title = "{ITA 2.0}: a Program for Classical and Inductive Item
Tree Analysis",
journal = j-J-STAT-SOFT,
volume = "16",
number = "10",
pages = "1--14",
month = sep,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v16/i10",
abstract = "Item Tree Analysis (ITA) is an explorative method of
data analysis which can be used to establish a
hierarchical structure on a set of dichotomous items
from a questionnaire or test. There are currently two
different algorithms available to perform an ITA. We
describe a computer program called ITA 2.0 which
implements both of these algorithms. In addition we
show with a concrete data set how the program can be
used for the analysis of questionnaire data.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-12-14; Accepted 2006-09-06",
xxtitle = "{ITA} 2.0: A Program for Classical and Inductive Item
Tree Analysis",
}
@Article{Dinov:2006:SSO,
author = "Ivo D. Dinov",
title = "{SOCR}: Statistics Online Computational Resource",
journal = j-J-STAT-SOFT,
volume = "16",
number = "11",
pages = "1--16",
month = oct,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v016.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/i11",
abstract = "The need for hands-on computer laboratory experience
in undergraduate and graduate statistics education has
been firmly established in the past decade. As a result
a number of attempts have been undertaken to develop
novel approaches for problem-driven statistical
thinking, data analysis and result interpretation. In
this paper we describe an integrated educational
web-based framework for: interactive distribution
modeling, virtual online probability experimentation,
statistical data analysis, visualization and
integration. Following years of experience in
statistical teaching at all college levels using
established licensed statistical software packages,
like STATA, S-PLUS, R, SPSS, SAS, Systat, etc., we have
attempted to engineer a new statistics education
environment, the Statistics Online Computational
Resource (SOCR). This resource performs many of the
standard types of statistical analysis, much like other
classical tools. In addition, it is designed in a
plug-in object-oriented architecture and is completely
platform independent, web-based, interactive,
extensible and secure. Over the past 4 years we have
tested, fine-tuned and reanalyzed the SOCR framework in
many of our undergraduate and graduate probability and
statistics courses and have evidence that SOCR
resources build student's intuition and enhance their
learning.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-07-01; Accepted 2006-10-01",
xxtitle = "{SOCR}: Statistics Online Computational Resource",
}
@Article{Murrell:2006:BRB,
author = "Paul Murrell",
title = "Book Review: {{\booktitle{Graphics of Large Datasets:
Visualizing a Million}}}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "BR-1",
pages = "1--3",
month = dec,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-12-05; Accepted 2006-12-05",
}
@Article{Gentleman:2006:BRB,
author = "Robert Gentleman",
title = "Book Review: {{\booktitle{Developing Statistical
Software in FORTRAN 95}}}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "BR-2",
pages = "1--2",
month = dec,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-12-05; Accepted 2006-12-05",
}
@Article{Karlsson:2006:SRS,
author = "Andreas Karlsson",
title = "Software Review: {{\em Scientific Workplace 5.5 and
LyX 1.4.2}}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "SR-1",
pages = "1--11",
month = oct,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.s01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/s01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-27; Accepted 2006-10-27",
}
@Article{Gromping:2006:RIL,
author = "Ulrike Gr{\"o}mping",
title = "Relative Importance for Linear Regression in {R}: The
Package \pkg{relaimpo}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "1",
pages = "1--27",
month = sep,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/i01",
abstract = "Relative importance is a topic that has seen a lot of
interest in recent years, particularly in applied work.
The R package \pkg{relaimpo} implements six different
metrics for assessing relative importance of regressors
in the linear model, two of which are recommended -
averaging over orderings of regressors and a newly
proposed metric (Feldman 2005) called pmvd. Apart from
delivering the metrics themselves, \pkg{relaimpo} also
provides (exploratory) bootstrap confidence intervals.
This paper offers a brief tutorial introduction to the
package. The methods and \pkg{relaimpo}'s functionality
are illustrated using the data set swiss that is
generally available in R. The paper targets readers who
have a basic understanding of multiple linear
regression. For the background of more advanced
aspects, references are provided.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-01-03; Accepted 2006-09-01",
xxtitle = "Relative Importance for Linear Regression in R: The
Package relaimpo",
}
@Article{Culp:2006:ARP,
author = "Mark Culp and Kjell Johnson and George Michailidis",
title = "\pkg{ada}: An {R} Package for Stochastic Boosting",
journal = j-J-STAT-SOFT,
volume = "17",
number = "2",
pages = "1--27",
month = sep,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/i02",
abstract = "Boosting is an iterative algorithm that combines
simple classification rules with ``mediocre''
performance in terms of misclassification error rate to
produce a highly accurate classification rule.
Stochastic gradient boosting provides an enhancement
which incorporates a random mechanism at each boosting
step showing an improvement in performance and speed in
generating the ensemble. \pkg{ada} is an R package that
implements three popular variants of boosting, together
with a version of stochastic gradient boosting. In
addition, useful plots for data analytic purposes are
provided along with an extension to the multi-class
case. The algorithms are illustrated with synthetic and
real data sets.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-07-13; Accepted 2007-07-13",
}
@Article{Meyer:2006:SFV,
author = "David Meyer and Achim Zeileis and Kurt Hornik",
title = "The {Strucplot} Framework: Visualizing Multi-way
Contingency Tables with \pkg{vcd}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "3",
pages = "1--48",
month = oct,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/i03",
abstract = "This paper describes the ``strucplot'' framework for
the visualization of multi-way contingency tables.
Strucplot displays include hierarchical conditional
plots such as mosaic, association, and sieve plots, and
can be combined into more complex, specialized plots
for visualizing conditional independence, GLMs, and the
results of independence tests. The framework's modular
design allows flexible customization of the plots'
graphical appearance, including shading, labeling,
spacing, and legend, by means of ``graphical appearance
control'' functions. The framework is provided by the R
package \pkg{vcd}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-11-02; Accepted 2006-10-19",
xxtitle = "The Strucplot Framework: Visualizing Multi-way
Contingency Tables with vcd",
}
@Article{Mineo:2006:URP,
author = "Angelo M. Mineo and Alfredo Pontillo",
title = "Using {R} via {PHP} for Teaching Purposes: {R-php}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "4",
pages = "1--20",
month = oct,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/i04",
abstract = "This paper deals with the R-php statistical software,
that is an environment for statistical analysis, freely
accessible and attainable through the World Wide Web,
based on R. Indeed, this software uses, as ``engine''
for statistical analyses, R via PHP and its design has
been inspired by a paper of de Leeuw (1997). R-php is
based on two modules: a base module and a
point-and-click module. R-php base allows the simple
editing of R code in a form. R-php point-and-click
allows some statistical analyses by means of a
graphical user interface (GUI): then, to use this
module it is not necessary for the user to know the R
environment, but all the allowed analyses can be
performed by using the computer mouse. We think that
this tool could be particularly useful for teaching
purposes: one possible use could be in a University
computer laboratory to permit a smooth approach of
students to R.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2004-09-04; Accepted 2006-10-20",
xxtitle = "Using R via {PHP} for Teaching Purposes: R-php",
}
@Article{Rizopoulos:2006:LRP,
author = "Dimitris Rizopoulos",
title = "\pkg{ltm}: An {R} Package for Latent Variable Modeling
and Item Response Analysis",
journal = j-J-STAT-SOFT,
volume = "17",
number = "5",
pages = "1--25",
month = nov,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/i05",
abstract = "The R package \pkg{ltm} has been developed for the
analysis of multivariate dichotomous and polytomous
data using latent variable models, under the Item
Response Theory approach. For dichotomous data the
Rasch, the Two-Parameter Logistic, and Birnbaum's
Three-Parameter models have been implemented, whereas
for polytomous data Semejima's Graded Response model is
available. Parameter estimates are obtained under
marginal maximum likelihood using the Gauss-Hermite
quadrature rule. The capabilities and features of the
package are illustrated using two real data examples.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-05-08; Accepted 2006-11-20",
xxtitle = "ltm: An R Package for Latent Variable Modeling and
Item Response Theory Analyses",
}
@Article{Friendly:2006:DEP,
author = "Michael Friendly",
title = "Data Ellipses, {HE} Plots and Reduced-Rank Displays
for Multivariate Linear Models: {SAS} Software and
Examples",
journal = j-J-STAT-SOFT,
volume = "17",
number = "6",
pages = "1--43",
month = nov,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v17/i06",
abstract = "This paper describes graphical methods for
multiple-response data within the framework of the
multivariate linear model (MLM), aimed at understanding
what is being tested in a multivariate test, and how
factor/predictor effects are expressed across multiple
response measures. In particular, we describe and
illustrate a collection of SAS macro programs for: (a)
Data ellipses and low-rank biplots for multivariate
data, (b) HE plots, showing the hypothesis and error
covariance matrices for a given pair of responses, and
a given effect, (c) HE plot matrices, showing all
pairwise HE plots, and (d) low-rank analogs of HE
plots, showing all observations, group means, and their
relations to the response variables.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-11; Accepted 2006-11-10",
xxtitle = "Data Ellipses, {HE} Plots and Reduced-Rank Displays
for Multivariate Linear Models: {SAS} Software and
Examples",
}
@Article{Caffo:2006:EHT,
author = "Brian Caffo",
title = "Exact Hypothesis Tests for Log-linear Models with
{exactLoglinTest}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "7",
pages = "1--17",
month = nov,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/i07",
abstract = "This manuscript overviews exact testing of goodness of
fit for log-linear models using the R package
exactLoglinTest. This package evaluates model fit for
Poisson log-linear models by conditioning on minimal
sufficient statistics to remove nuisance parameters. A
Monte Carlo algorithm is proposed to estimate P values
from the resulting conditional distribution. In
particular, this package implements a sequentially
rounded normal approximation and importance sampling to
approximate probabilities from the conditional
distribution. Usually, this results in a high
percentage of valid samples. However, in instances
where this is not the case, a Metropolis Hastings
algorithm can be implemented that makes more localized
jumps within the reference set. The manuscript details
how some conditional tests for binomial logit models
can also be viewed as conditional Poisson log-linear
models and hence can be performed via exactLoglinTest.
A diverse battery of examples is considered to
highlight use, features and extensions of the software.
Notably, potential extensions to evaluating disclosure
risk are also considered.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-02-07; Accepted 2006-11-10",
xxtitle = "Exact Hypothesis Tests for Log-linear Models with
{exactLoglinTest}",
}
@Article{Xiao:2007:CPC,
author = "Yuanhui Xiao and Alexander Gordon and Andrei
Yakovlev",
title = "A {C++} Program for the {Cram{\'e}r--Von Mises}
Two-Sample Test",
journal = j-J-STAT-SOFT,
volume = "17",
number = "8",
pages = "1--15",
month = dec,
year = "2006",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/i08",
abstract = "As larger sets of high-throughput data in genomics and
proteomics become more readily available, there is a
growing need for fast algorithms designed to compute
exact p values of distribution-free statistical tests.
We present a program for computing the exact
distribution of the two-sample Cram{\'e}r-von Mises
test statistic under the null hypothesis that the two
samples are drawn from the same continuous
distribution. The program makes it possible to handle
substantially larger sample sizes than earlier proposed
computational tools. The C++ source code for the
program is published with this paper, and an R package
is under development.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-03-17; Accepted 2006-12-18",
xxtitle = "A C$\mathplus\mathplus$ Program for the Cram{\'e}r-von
Mises Two-Sample Test",
xxyear = "2007",
}
@Article{Cox:2007:BRB,
author = "Nicholas Cox",
title = "Book Review: {{\booktitle{The Grammar of Graphics}}}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "BR-3",
pages = "1--7",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-15; Accepted 2007-01-15",
}
@Article{Sanchez:2007:BRB,
author = "Juana Sanchez",
title = "Book Review: {{\booktitle{``Linear Models with R''}}
and {\em ``Extending the Linear Model with R''}}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "BR-4",
pages = "1--3",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.b04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-16; Accepted 2007-01-16",
}
@Article{Maindonald:2007:BRB,
author = "John Maindonald",
title = "Book Review: {{\booktitle{Pattern Recognition and
Machine Learning}}}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "BR-5",
pages = "1--3",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.b05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-31; Accepted 2007-01-31",
}
@Article{Sardy:2007:BRB,
author = "Sylvain Sardy and Valerie Chavez-Demoulin",
title = "Book Review: {{\booktitle{Modeling Financial Time
Series with S-PLUS}} (2nd Edition)}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "BR-6",
pages = "1--2",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.b06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-09; Accepted 2007-02-09",
}
@Article{Hankin:2007:CSU,
author = "Robin K. S. Hankin",
title = "Code Snippet: Urn Sampling Without Replacement:
Enumerative Combinatorics in {R}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "CS-1",
pages = "1--6",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-08-22; Accepted 2007-01-03",
}
@Article{Bowman:2007:RSI,
author = "Adrian Bowman and Ewan Crawford and Gavin Alexander
and Richard W. Bowman",
title = "\pkg{rpanel}: Simple Interactive Controls for {R}
Functions Using the \pkg{tcltk} Package",
journal = j-J-STAT-SOFT,
volume = "17",
number = "9",
pages = "1--18",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/i09",
abstract = "In a variety of settings it is extremely helpful to be
able to apply R functions through buttons, sliders and
other types of graphical control. This is particularly
true in plotting activities where immediate
communication between such controls and a graphical
display allows the user to interact with a plot in a
very effective manner. The \pkg{tcltk} package provides
extensive tools for this and the aim of the
\pkg{rpanel} package is to provide simple and well
documented functions which make these facilities as
accessible as possible. In addition, the operations
which form the basis of communication within
\pkg{tcltk} are managed in a way which allows users to
write functions with a more standard form of parameter
passing. This paper describes the basic design of the
software and illustrates it on a variety of examples of
interactive control of graphics. The \pkg{tkrplot}
system is used to allow plots to be integrated with
controls into a single panel. An example of the use of
a graphical image, and the ability to interact with
this, is also discussed.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-08-29; Accepted 2007-01-01",
xxtitle = "rpanel: Simple Interactive Controls for R Functions
Using the tcltk Package",
}
@Article{Perez:2007:RJI,
author = "Carlos Javier P{\'e}rez and Hansgeorg Schwibbe and
Petra Weidner",
title = "{RAGE}: a {Java}-implemented Visual Random Generator",
journal = j-J-STAT-SOFT,
volume = "17",
number = "10",
pages = "1--10",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v017.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v17/i10",
abstract = "Carefully designed Java applications turn out to be
efficient and platform independent tools that can
compete well with classical implementations of
statistical software. The project presented here is an
example underlining this statement for random variate
generation. An end-user application called RAGE (Random
Variate Generator) is developed to generate random
variates from probability distributions. A Java class
library called JDiscreteLib has been designed and
implemented for the simulation of random variables from
the most usual discrete distributions inside RAGE. For
each distribution, specific and general algorithms are
available for this purpose. RAGE can also be used as an
interactive simulation tool for data and data summary
visualization.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-03-30; Accepted 2007-01-31",
xxtitle = "{RAGE}: A Java -implemented Visual Random Generator",
}
@Article{Mullen:2007:ISV,
author = "Katharine M. Mullen and Ivo H. M. van Stokkum",
title = "An Introduction to the {{\em ``Special Volume
Spectroscopy and Chemometrics in R''}}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "1",
pages = "1--5",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v18/i01",
abstract = "This special volume collates ten issues under the
rubric ``Spectroscopy and Chemometrics in R''. In so
doing, it provides an overview of the breadth, depth
and state of the art of R-based software projects for
spectroscopy and chemometrics applications. Just as the
authors have contributed to R their documentation and
source code, so has R contributed to the quality,
standardization and dissemination of their software, as
this volume attests. We hope that the volume is
inspiring to both computational statisticians
interested in applications of their methodologies and
to spectroscopists or chemometricians in need of
solutions to their data analysis problems.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-16; Accepted 2007-01-16",
xxtitle = "An Introduction to the Special Volume ``Spectroscopy
and Chemometrics in R''",
}
@Article{Mevik:2007:PPP,
author = "Bj{\"o}rn-Helge Mevik and Ron Wehrens",
title = "The \pkg{pls} Package: Principal Component and Partial
Least Squares Regression in {R}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "2",
pages = "1--24",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i02",
abstract = "The \pkg{pls} package implements principal component
regression (PCR) and partial least squares regression
(PLSR) in R (R Development Core Team 2006b), and is
freely available from the Comprehensive R Archive
Network (CRAN), licensed under the GNU General Public
License (GPL). The user interface is modeled after the
traditional formula interface, as exemplified by lm.
This was done so that people used to R would not have
to learn yet another interface, and also because we
believe the formula interface is a good way of working
interactively with models. It thus has methods for
generic functions like predict, update and coef. It
also has more specialised functions like scores,
loadings and RMSEP, and a flexible cross-validation
system. Visual inspection and assessment is important
in chemometrics, and the \pkg{pls} package has a number
of plot functions for plotting scores, loadings,
predictions, coefficients and RMSEP estimates. The
package implements PCR and several algorithms for PLSR.
The design is modular, so that it should be easy to use
the underlying algorithms in other functions. It is our
hope that the package will serve well both for
interactive data analysis and as a building block for
other functions or packages using PLSR or PCR. We will
here describe the package and how it is used for data
analysis, as well as how it can be used as a part of
other packages. Also included is a section about
formulas and data frames, for people not used to the R
modelling idioms.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-04; Accepted 2007-01-10",
xxtitle = "The pls Package: Principal Component and Partial Least
Squares Regression in R",
}
@Article{Mullen:2007:TRP,
author = "Katharine M. Mullen and Ivo H. M. van Stokkum",
title = "{TIMP}: An {R} Package for Modeling Multi-way
Spectroscopic Measurements",
journal = j-J-STAT-SOFT,
volume = "18",
number = "3",
pages = "1--46",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i03",
abstract = "TIMP is an R package for modeling multiway
spectroscopic measurements. The package allows for the
simultaneous analysis of datasets collected under
different experimental conditions in terms of a wide
variety of parametric models. Models arising in
spectroscopy data analysis often have some parameters
that are intrinstically nonlinear, and some parameters
that are conditionally linear on estimates of the
nonlinear parameters. TIMP fits such separable
nonlinear models using partitioned variable projection,
a variant of the variable projection algorithm that is
described here for the first time. The of the
partitioned variable projection algorithm allows
fitting many models for spectroscopy datasets using
much less memory as compared to under the standard
variable projection algorithm that is implemented in
nonlinear optimization routines (e.g., the plinear
option of the R function nls), as is shown here. An
overview of modeling with TIMP is also given that
includes several case studies in the application of the
package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-01-10",
xxtitle = "{TIMP}: An R Package for Modeling Multi-Way
Spectroscopic Measurements",
}
@Article{Kirchner:2007:ARP,
author = "Marc Kirchner and Benjamin Saussen and Hanno Steen and
Judith A. J. Steen and Fred A. Hamprecht",
title = "\pkg{amsrpm}: Robust Point Matching for Retention Time
Alignment of {LC\slash MS} Data with {R}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "4",
pages = "1--12",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i04",
abstract = "Proteomics is the study of the abundance, function and
dynamics of all proteins present in a living organism,
and mass spectrometry (MS) has become its most
important tool due to its unmatched sensitivity,
resolution and potential for high-throughput
experimentation. A frequently used variant of mass
spectrometry is coupled with liquid chromatography (LC)
and is denoted as ``LC/MS''. It produces
two-dimensional raw data, where significant distortions
along one of the dimensions can occur between different
runs on the same instrument, and between instruments. A
compensation of these distortions is required to allow
for comparisons between and inference based on
different experiments. This article introduces the
\pkg{amsrpm} software package. It implements a variant
of the Robust Point Matching (RPM) algorithm that is
tailored for the alignment of LC and LC/MS experiments.
Problem-specific enhancements include a specialized
dissimilarity measure, and means to enforce smoothness
and monotonicity of the estimated transformation
function. The algorithm does not rely on pre-specified
landmarks, it is insensitive towards outliers and
capable of modeling nonlinear distortions. Its
usefulness is demonstrated using both simulated and
experimental data. The software is available as an open
source package for the statistical programming language
R.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-30; Accepted 2007-07-19",
xxtitle = "amsrpm: Robust Point Matching for Retention Time
Alignment of {LC}/{MS} Data with R",
}
@Article{Guha:2007:CIF,
author = "Rajarshi Guha",
title = "Chemical Informatics Functionality in {R}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "5",
pages = "1--16",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i05",
abstract = "The flexibility and scope of the R programming
environment has made it a popular choice for
statistical modeling and scientific prototyping in a
number of fields. In the field of chemistry, R provides
several tools for a variety of problems related to
statistical modeling of chemical information. However,
one aspect common to these tools is that they do not
have direct access to the information that is available
from chemical structures, such as contained in
molecular descriptors.\par
We describe the rcdk package that provides the R user
with access to the CDK, a Java framework for
cheminformatics. As a result, it is possible to read in
a variety of molecular formats, calculate molecular
descriptors and evaluate fingerprints. In addition, we
describe the rpubchem that will allow access to the
data in PubChem, a public repository of molecular
structures and associated assay data for approximately
8 million compounds. Currently, the package allows
access to structural information as well as some simple
molecular properties from PubChem. In addition the
package allows access to bio-assay data from the
PubChem FTP servers.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-25; Accepted 2007-01-01",
xxtitle = "Chemical Informatics Functionality in R",
}
@Article{Fraley:2007:MBM,
author = "Chris Fraley and Adrian Raftery",
title = "Model-based Methods of Classification: Using the
mclust Software in Chemometrics",
journal = j-J-STAT-SOFT,
volume = "18",
number = "6",
pages = "1--13",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v18/i06",
abstract = "Due to recent advances in methods and software for
model-based clustering, and to the interpretability of
the results, clustering procedures based on probability
models are increasingly preferred over heuristic
methods. The clustering process estimates a model for
the data that allows for overlapping clusters,
producing a probabilistic clustering that quantifies
the uncertainty of observations belonging to components
of the mixture. The resulting clustering model can also
be used for some other important problems in
multivariate analysis, including density estimation and
discriminant analysis. Examples of the use of
model-based clustering and classification techniques in
chemometric studies include multivariate image
analysis, magnetic resonance imaging, microarray image
segmentation, statistical process control, and food
authenticity. We review model-based clustering and
related methods for density estimation and discriminant
analysis, and show how the R package mclust can be
applied in each instance.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-27; Accepted 2007-01-10",
xxtitle = "Model-based Methods of Classification: Using the
mclust Software in Chemometrics",
}
@Article{Binsl:2007:FRP,
author = "Thomas W. Binsl and Katharine M. Mullen and Ivo H. M.
van Stokkum and Jaap Heringa and Johannes H. G. M. van
Beek",
title = "{FluxSimulator}: An {R} Package to Simulate Isotopomer
Distributions in Metabolic Networks",
journal = j-J-STAT-SOFT,
volume = "18",
number = "7",
pages = "1--17",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i07",
abstract = "The representation of biochemical knowledge in terms
of fluxes (transformation rates) in a metabolic network
is often a crucial step in the development of new drugs
and efficient bioreactors. Mass spectroscopy (MS) and
nuclear magnetic resonance spectroscopy (NMRS) in
combination with ${}^{13}$C labeled substrates are
experimental techniques resulting in data that may be
used to quantify fluxes in the metabolic network
underlying a process. The massive amount of data
generated by spectroscopic experiments increasingly
requires software which models the dynamics of the
underlying biological system. In this work we present
an approach to handle isotopomer distributions in
metabolic networks using an object-oriented programming
approach, implemented using S4 classes in R. The
developed package is called FluxSimulator and provides
a user friendly interface to specify the topological
information of the metabolic network as well as carbon
atom transitions in plain text files. The package
automatically derives the mathematical representation
of the formulated network, and assembles a set of
ordinary differential equations (ODEs) describing the
change of each isotopomer pool over time. These ODEs
are subsequently solved numerically. In a case study
FluxSimulator was applied to an example network. Our
results indicate that the package is able to reproduce
exact changes in isotopomer compositions of the
metabolite pools over time at given flux rates.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-28; Accepted 2007-01-10",
xxtitle = "{FluxSimulator}: An R Package to Simulate Isotopomer
Distributions in Metabolic Networks",
}
@Article{Mullen:2007:FLI,
author = "Sergey Laptenok and Katharine M. Mullen and Jan Willem
Borst and Ivo H. M. van Stokkum and Vladimir V.
Apanasovich and Antonie J. W. G. Visser",
title = "Fluorescence Lifetime Imaging Microscopy ({FLIM}) Data
Analysis with {TIMP}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "8",
pages = "1--20",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v18/i08",
abstract = "Fluorescence Lifetime Imaging Microscopy (FLIM) allows
fluorescence lifetime images of biological objects to
be collected at 250 nm spatial resolution and at
(sub-)nanosecond temporal resolution. Often $ n_{\rm
comp} $ kinetic processes underlie the observed
fluorescence at all locations, but the intensity of the
fluorescence associated with each process varies
per-location, i.e., per-pixel imaged. Then the
statistical challenge is global analysis of the image:
use of the fluorescence decay in time at all locations
to estimate the $ n_{\rm comp} $ lifetimes associated
with the kinetic processes, as well as the amplitude of
each kinetic process at each location. Given that
typical FLIM images represent on the order of $ 10^2 $
timepoints and $ 10^3 $ locations, meeting this
challenge is computationally intensive. Here the
utility of the TIMP package for R to solve parameter
estimation problems arising in FLIM image analysis is
demonstrated. Case studies on simulated and real data
evidence the applicability of the partitioned variable
projection algorithm implemented in TIMP to the problem
domain, and showcase options included in the package
for the visual validation of models for FLIM data.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-12-11; Accepted 2007-01-10",
xxtitle = "Fluorescence Lifetime Imaging Microscopy ({FLIM}) Data
Analysis with {TIMP}",
}
@Article{Ritter:2007:ICD,
author = "Christian Ritter and Jean Gilliard",
title = "{ImpuR}: a Collection of Diagnostic Tools Developed in
{R} in the Context of Peak Impurity Detection in
{HPLC-DAD} but Potentially Useful with Other Types of
Time-Intensity Matrices",
journal = j-J-STAT-SOFT,
volume = "18",
number = "9",
pages = "1--18",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i09",
abstract = "HPLC-DAD systems generate time intensity (absorbance)
matrices called spectrochromatograms. Under good
experimental conditions, spectro-chromatograms of
elution peaks of pure analytes are bilinear products of
a time peak and an absorbance spectrum. Co-eluting
impurities create deviations from this pure bilinear
structure. Unfortunately, other imperfections, such as
scan averaging, large optical windows, imperfect lamp
alignment, mobile phase fluctuations, etc. also create
departures from the pure bilinear structure. This makes
it hard to distinguish low concentration impurities
from artifacts and hampers safe detection of
contaminants. There are two main ways to deal with such
artifacts: removal and simulation, and ImpuR provides R
functions to do both and to integrate both approaches.
More specifically, ImpuR provides a set of tools to
explore time-intensity matrices with respect to their
bilinear structure and departures from it. It includes
exploratory graphs for bilinear matrices (bilinear
residual graphs and singular value decompositions),
spectral dissimilarity curves via window-evolving
factor analysis with heteroscedasticity correction and
the sine method, methods for removal of artifacts, and
a comprehensive simulation tool to assess the impact of
potential artifacts and to allow for the construction
of guide curves for use with the sine method.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-24; Accepted 2007-01-11",
xxtitle = "{ImpuR}: A Collection of Diagnostic Tools Developed in
R in the Context of Peak Impurity Detection in
{HPLC}-{DAD} but Potentially Useful with Other Types of
Time-Intensity Matrices",
}
@Article{Krastev:2007:SSS,
author = "Teodor Krastev",
title = "\pkg{spectrino} Software: Spectra Visualization and
Preparation for {R}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "10",
pages = "1--16",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i10",
abstract = "\pkg{spectrino} is a spectra preparation software
utility for the R language and environment for
statistical computing. It is an operating-system
specific tool, for use under Microsoft Windows, with
specialized visualization, organization and
preprocessing features for spectra. The software
accepts spectral data from analytical instruments and
then prepares a data structure to be introduced in R.
\pkg{spectrino} has a rich set of features to create
data structures and visually manipulate/compare
spectra. The application is accessible by a library of
functions from within R. These commands allow for the
creation and manipulation of data structures in
\pkg{spectrino} and the selective extraction of
spectral data. Before exporting, the spectra are
preprocessed according the requirements of consecutive
discriminant analysis. This preprocessing is adjustable
by a series of options.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-01-10",
}
@Article{Babu:2007:URB,
author = "G. Jogesh Babu and Ashish Mahabal",
title = "Using {R}-based {VOStat} as a Low-Resolution Spectrum
Analysis Tool",
journal = j-J-STAT-SOFT,
volume = "18",
number = "11",
pages = "1--12",
month = jan,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v018.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i11",
abstract = "We describe here an online software suite VOStat
written mainly for the Virtual Observatory, a novel
structure in which astronomers share terabyte scale
data. Written mostly in the public-domain statistical
computing language and environment R, it can do a
variety of statistical analysis on multidimensional,
multi-epoch data with errors. Included are techniques
which allow astronomers to start with multi-color data
in the form of low-resolution spectra and select
special kinds of sources in a variety of ways including
color outliers. Here we describe the tool and
demonstrate it with an example from Palomar-QUEST, a
synoptic sky survey.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-16; Accepted 2007-01-10",
xxtitle = "Using R -based {VOStat} as a Low-Resolution Spectrum
Analysis Tool",
}
@Article{deLeeuw:2007:BRB,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Computational
Statistics}}}",
journal = j-J-STAT-SOFT,
volume = "19",
number = "BR-1",
pages = "1--3",
month = mar,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v19/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-03-23; Accepted 2007-03-23",
}
@Article{Tanimura:2007:CSA,
author = "Susumu Tanimura and Chusi Kuroiwa and Tsutomu Mizota",
title = "Code Snippet: Auxiliary Cartographic Functions in {R}:
North Arrow, Scale Bar, and Label with Leader Arrow",
journal = j-J-STAT-SOFT,
volume = "19",
number = "CS-1",
pages = "1--8",
month = apr,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v19/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-12-27; Accepted 2007-04-10",
}
@Article{Polzehl:2007:ASD,
author = "J{\"o}rg Polzehl and Karsten Tabelow",
title = "Adaptive Smoothing of Digital Images: The {R} Package
\pkg{adimpro}",
journal = j-J-STAT-SOFT,
volume = "19",
number = "1",
pages = "1--17",
month = mar,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v19/i01",
abstract = "Digital imaging has become omnipresent in the past
years with a bulk of applications ranging from medical
imaging to photography. When pushing the limits of
resolution and sensitivity noise has ever been a major
issue. However, commonly used non-adaptive filters can
do noise reduction at the cost of a reduced effective
spatial resolution only. Here we present a new package
\pkg{adimpro} for R, which implements the
propagation-separation approach by (Polzehl and
Spokoiny 2006) for smoothing digital images. This
method naturally adapts to different structures of
different size in the image and thus avoids
oversmoothing edges and fine structures. We extend the
method for imaging data with spatial correlation.
Furthermore we show how the estimation of the
dependence between variance and mean value can be
included. We illustrate the use of the package through
some examples.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-27; Accepted 2007-03-27",
xxtitle = "Adaptive Smoothing of Digital Images: The R Package
adimpro",
}
@Article{Paciorek:2007:BSG,
author = "Christopher J. Paciorek",
title = "{Bayesian} Smoothing with {Gaussian} Processes Using
{Fourier} Basis Functions in the \pkg{spectralGP}
Package",
journal = j-J-STAT-SOFT,
volume = "19",
number = "2",
pages = "1--38",
month = apr,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v19/i02",
abstract = "The spectral representation of stationary Gaussian
processes via the Fourier basis provides a
computationally efficient specification of spatial
surfaces and nonparametric regression functions for use
in various statistical models. I describe the
representation in detail and introduce the
\pkg{spectralGP} package in R for computations. Because
of the large number of basis coefficients, some form of
shrinkage is necessary; I focus on a natural Bayesian
approach via a particular parameterized prior structure
that approximates stationary Gaussian processes on a
regular grid. I review several models from the
literature for data that do not lie on a grid, suggest
a simple model modification, and provide example code
demonstrating MCMC sampling using the \pkg{spectralGP}
package. I describe reasons that mixing can be slow in
certain situations and provide some suggestions for
MCMC techniques to improve mixing, also with example
code, and some general recommendations grounded in
experience.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-08-09; Accepted 2007-04-10",
xxtitle = "Bayesian Smoothing with Gaussian Processes Using
Fourier Basis Functions in the {spectralGP} Package",
}
@Article{Headrick:2007:NCG,
author = "Todd C. Headrick and Yanyan Sheng and Flaviu-Adrian
Hodis",
title = "Numerical Computing and Graphics for the Power Method
Transformation Using {Mathematica}",
journal = j-J-STAT-SOFT,
volume = "19",
number = "3",
pages = "1--17",
month = apr,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/mathematica.bib",
URL = "http://www.jstatsoft.org/v19/i03",
abstract = "This paper provides the requisite information and
description of software that perform numerical
computations and graphics for the power method
polynomial transformation. The software developed is
written in the Mathematica 5.2 package PowerMethod.m
and is associated with fifth-order polynomials that are
used for simulating univariate and multivariate
non-normal distributions. The package is flexible
enough to allow a user the choice to model theoretical
pdfs, empirical data, or a user's own selected
distribution(s). The primary functions perform the
following (a) compute standardized cumulants and
polynomial coefficients, (b) ensure that polynomial
transformations yield valid pdfs, and (c) graph power
method pdfs and cdfs. Other functions compute
cumulative probabilities, modes, trimmed means,
intermediate correlations, or perform the graphics
associated with fitting power method pdfs to either
empirical or theoretical distributions. Numerical
examples and Monte Carlo results are provided to
demonstrate and validate the use of the software
package. The notebook Demo.nb is also provided as a
guide for user of the power method.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-04-10; Accepted 2007-04-21",
xxtitle = "Numerical Computing and Graphics for the Power Method
Transformation Using Mathematica",
}
@Article{Finley:2007:SRP,
author = "Andrew O. Finley and Sudipto Banerjee and Bradley P.
Carlin",
title = "\pkg{spBayes}: An {R} Package for Univariate and
Multivariate Hierarchical Point-referenced Spatial
Models",
journal = j-J-STAT-SOFT,
volume = "19",
number = "4",
pages = "1--24",
month = apr,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v19/i04",
abstract = "Scientists and investigators in such diverse fields as
geological and environmental sciences, ecology,
forestry, disease mapping, and economics often
encounter spatially referenced data collected over a
fixed set of locations with coordinates
(latitude-longitude, Easting-Northing etc.) in a region
of study. Such point-referenced or geostatistical data
are often best analyzed with Bayesian hierarchical
models. Unfortunately, fitting such models involves
computationally intensive Markov chain Monte Carlo
(MCMC) methods whose efficiency depends upon the
specific problem at hand. This requires extensive
coding on the part of the user and the situation is not
helped by the lack of available software for such
algorithms. Here, we introduce a statistical software
package, \pkg{spBayes}, built upon the R statistical
computing platform that implements a generalized
template encompassing a wide variety of Gaussian
spatial process models for univariate as well as
multivariate point-referenced data. We discuss the
algorithms behind our package and illustrate its use
with a synthetic and real data example.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-29; Accepted 2007-04-24",
xxtitle = "{spBayes}: An R Package for Univariate and
Multivariate Hierarchical Point-referenced Spatial
Models",
}
@Article{Baillargeon:2007:PRL,
author = "Sophie Baillargeon and Louis-Paul Rivest",
title = "\pkg{Rcapture}: Loglinear Models for Capture-Recapture
in {R}",
journal = j-J-STAT-SOFT,
volume = "19",
number = "5",
pages = "1--31",
month = apr,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v19/i05",
abstract = "This article introduces \pkg{Rcapture}, an R package
for capture-recapture experiments. The data for
analysis consists of the frequencies of the observable
capture histories over the t capture occasions of the
experiment. A capture history is a vector of zeros and
ones where one stands for a capture and zero for a
miss. \pkg{Rcapture} can fit three types of models.
With a closed population model, the goal of the
analysis is to estimate the size N of the population
which is assumed to be constant throughout the
experiment. The estimator depends on the way in which
the capture probabilities of the animals vary.
\pkg{Rcapture} features several models for these
capture probabilities that lead to different estimators
for N. In an open population model, immigration and
death occur between sampling periods. The estimation of
survival rates is of primary interest. \pkg{Rcapture}
can fit the basic Cormack-Jolly-Seber and Jolly-Seber
model to such data. The third type of models fitted by
\pkg{Rcapture} are robust design models. It features
two levels of sampling; closed population models apply
within primary periods and an open population model
applies between periods. Most models in \pkg{Rcapture}
have a loglinear form; they are fitted by carrying out
a Poisson regression with the R function \pkg{glm}.
Estimates of the demographic parameters of interest are
derived from the loglinear parameter estimates; their
variances are obtained by linearization. The novel
feature of this package is the provision of several new
options for modeling capture probabilities
heterogeneity between animals in both closed population
models and the primary periods of a robust design. It
also implements many of the techniques developed by R.
M. Cormack for open population models.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-12; Accepted 2007-04-03",
xxtitle = "The Rcapture Package: Loglinear Models for
Capture-Recapture in R",
}
@Article{Brown:2007:RAM,
author = "J. Randall Brown and Milton E. Harvey",
title = "Rational Arithmetic {Mathematica} Functions to
Evaluate the One-sided One-sample {K-S} Cumulative
Sample Distribution",
journal = j-J-STAT-SOFT,
volume = "19",
number = "6",
pages = "1--32",
month = mar,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/mathematica.bib",
URL = "http://www.jstatsoft.org/v19/i06",
abstract = "One of the most widely used goodness-of-fit tests is
the Kolmogorov--Smirnov (KS) family of tests which have
been implemented by many computer statistical software
packages. To calculate a p value (evaluate the
cumulative sampling distribution), these packages use
various methods including recursion formulae, limiting
distributions, and approximations of unknown accuracy
developed over thirty years ago. Based on an extensive
literature search for the one-sided one-sample K-S
test, this paper identifies two direct formulae and
five recursion formulae that can be used to calculate a
p value and then develops two additional direct
formulae and four iterative versions of the direct
formulae for a total of thirteen formulae. To ensure
accurate calculation by avoiding catastrophic
cancellation and eliminating rounding error, each
formula is implemented in rational arithmetic. Linear
search is used to calculate the inverse of the
cumulative sampling distribution (find the confidence
interval bandwidth). Extensive tables of bandwidths are
presented for sample sizes up to 2, 000. The results
confirm the hypothesis that as the number of digits in
the numerator and denominator integers of the rational
number test statistic increases, the computation time
also increases. In comparing the computational times of
the thirteen formulae, the direct formulae are slightly
faster than their iterative versions and much faster
than all the recursion formulae. Computational times
for the fastest formula are given for sample sizes up
to fifty thousand.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-06-08; Accepted 2007-03-17",
xxtitle = "Rational Arithmetic Mathematica Functions to Evaluate
the One-sided One-sample K-S Cumulative Sampling
Distribution",
}
@Article{Carrigan:2007:CMD,
author = "Gretchen Carrigan and Adrian G. Barnett and Annette J.
Dobson and Gita Mishra",
title = "Compensating for Missing Data from Longitudinal
Studies Using {WinBUGS}",
journal = j-J-STAT-SOFT,
volume = "19",
number = "7",
pages = "1--17",
month = jun,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v19/i07",
abstract = "Missing data is a common problem in survey based
research. There are many packages that compensate for
missing data but few can easily compensate for missing
longitudinal data. WinBUGS compensates for missing data
using multiple imputation, and is able to incorporate
longitudinal structure using random effects. We
demonstrate the superiority of longitudinal imputation
over cross-sectional imputation using WinBUGS. We use
example data from the Australian Longitudinal Study on
Women's Health. We give a SAS macro that uses WinBUGS
to analyze longitudinal models with missing covariate
date, and demonstrate its use in a longitudinal study
of terminal cancer patients and their carers.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-11-30; Accepted 2007-06-07",
xxtitle = "Compensating for Missing Data from Longitudinal
Studies Using {WinBUGS}",
}
@Article{Lenth:2007:SLP,
author = "Russell V. Lenth and S{\o}ren H{\o}jsgaard",
title = "{SASweave}: Literate Programming Using {SAS}",
journal = j-J-STAT-SOFT,
volume = "19",
number = "8",
pages = "1--20",
month = may,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/litprog.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v19/i08",
abstract = "SASweave is a collection of scripts that allow one to
embed SAS code into a {\LaTeX} document, and
automatically incorporate the results as well. SASweave
is patterned after Sweave, which does the same thing
for code written in R. In fact, a document may contain
both SAS and R code. Besides the convenience of being
able to easily incorporate SAS examples in a document,
SASweave facilitates the concept of ``literate
programming'': having code, documentation, and results
packaged together. Among other things, this helps to
ensure that the SAS output in the document is in
concordance with the code.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-14; Accepted 2007-05-27",
xxtitle = "{SASweave}: Literate Programming Using {SAS}",
}
@Article{Gramacy:2007:TRP,
author = "Robert B. Gramacy",
title = "\pkg{tgp}: An {R} Package for {Bayesian}
Nonstationary, Semiparametric Nonlinear Regression and
Design by Treed {Gaussian} Process Models",
journal = j-J-STAT-SOFT,
volume = "19",
number = "9",
pages = "1--46",
month = jun,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v019.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v19/i09",
abstract = "The \pkg{tgp} package for R is a tool for fully
Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes with
jumps to the limiting linear model. Special cases also
implemented include Bayesian linear models, linear
CART, stationary separable and isotropic Gaussian
processes. In addition to inference and posterior
prediction, the package supports the (sequential)
design of experiments under these models paired with
several objective criteria. 1-d and 2-d plotting, with
higher dimension projection and slice capabilities, and
tree drawing functions (requiring maptree and combinat
packages), are also provided for visualization of
\pkg{tgp} objects.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-12; Accepted 2007-06-13",
xxtitle = "tgp: An R Package for Bayesian Nonstationary,
Semiparametric Nonlinear Regression and Design by Treed
Gaussian Process Models",
}
@Article{deLeeuw:2007:ISV,
author = "Jan de Leeuw and Patrick Mair",
title = "An Introduction to the Special Volume on {{\em
``Psychometrics in R''}}",
journal = j-J-STAT-SOFT,
volume = "20",
number = "1",
pages = "1--5",
month = may,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v20/i01",
abstract = "This special volume presents a select number of
psychometric techniques, many of them original, and
their implementation in R packages.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-12; Accepted 2007-05-01",
xxtitle = "An Introduction to the Special Volume on
``Psychometrics in R''",
}
@Article{Doran:2007:EMR,
author = "Harold Doran and Douglas Bates and Paul Bliese and
Maritza Dowling",
title = "Estimating the Multilevel {Rasch} Model: With the
\pkg{lme4} Package",
journal = j-J-STAT-SOFT,
volume = "20",
number = "2",
pages = "1--18",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v20/i02",
abstract = "Traditional Rasch estimation of the item and student
parameters via marginal maximum likelihood, joint
maximum likelihood or conditional maximum likelihood,
assume individuals in clustered settings are
uncorrelated and items within a test that share a
grouping structure are also uncorrelated. These
assumptions are often violated, particularly in
educational testing situations, in which students are
grouped into classrooms and many test items share a
common grouping structure, such as a content strand or
a reading passage. Consequently, one possible approach
is to explicitly recognize the clustered nature of the
data and directly incorporate random effects to account
for the various dependencies. This article demonstrates
how the multilevel Rasch model can be estimated using
the functions in R for mixed-effects models with
crossed or partially crossed random effects. We
demonstrate how to model the following hierarchical
data structures: (a) individuals clustered in similar
settings (e.g., classrooms, schools), (b) items nested
within a particular group (such as a content strand or
a reading passage), and (c) how to estimate a teacher $
\times $ content strand interaction.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
xxtitle = "Estimating the Multilevel Rasch Model: With the lme4
Package",
}
@Article{Nenadic:2007:RS,
author = "Oleg Nenadi{\'c} and Michael Greenacre",
title = "Correspondence Analysis in {R}, with Two- and
Three-dimensional Graphics: The \pkg{ca} Package",
journal = j-J-STAT-SOFT,
volume = "20",
number = "3",
pages = "1--13",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v20/i03",
abstract = "We describe an implementation of simple, multiple and
joint correspondence analysis in R. The resulting
package comprises two parts, one for simple
correspondence analysis and one for multiple and joint
correspondence analysis. Within each part, functions
for computation, summaries and visualization in two and
three dimensions are provided, including options to
display supplementary points and perform subset
analyses. Special emphasis has been put on the
visualization functions that offer features such as
different scaling options for biplots and
three-dimensional maps using the rgl package. Graphical
options include shading and sizing plot symbols for the
points according to their contributions to the map and
masses respectively.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
xxtitle = "Correspondence Analysis in R, with Two- and
Three-dimensional Graphics: The ca Package",
}
@Article{Verhelst:2007:RS,
author = "Norman D. Verhelst and Reinhold Hatzinger and Patrick
Mair",
title = "The {Rasch} Sampler",
journal = j-J-STAT-SOFT,
volume = "20",
number = "4",
pages = "1--14",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v20/i04",
abstract = "The Rasch sampler is an efficient algorithm to sample
binary matrices with given marginal sums. It is a
Markov chain Monte Carlo (MCMC) algorithm. The program
can handle matrices of up to 1024 rows and 64 columns.
A special option allows to sample square matrices with
given marginals and fixed main diagonal, a problem
prominent in social network analysis. In all cases the
stationary distribution is uniform. The user has
control on the serial dependency.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
xxtitle = "The Rasch Sampler",
}
@Article{Fox:2007:MIM,
author = "Jean-Paul Fox",
title = "Multilevel {IRT} Modeling in Practice with the Package
\pkg{mlirt}",
journal = j-J-STAT-SOFT,
volume = "20",
number = "5",
pages = "1--16",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v20/i05",
abstract = "Variance component models are generally accepted for
the analysis of hierarchical structured data. A
shortcoming is that outcome variables are still treated
as measured without an error. Unreliable variables
produce biases in the estimates of the other model
parameters. The variability of the relationships across
groups and the group-effects on individuals' outcomes
differ substantially when taking the measurement error
in the dependent variable of the model into account.
The multilevel model can be extended to handle
measurement error using an item response theory (IRT)
model, leading to a multilevel IRT model. This extended
multilevel model is in particular suitable for the
analysis of educational response data where students
are nested in schools and schools are nested within
cities/countries.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
xxtitle = "Multilevel {IRT} Modeling in Practice with the Package
mlirt",
}
@Article{Anderson:2007:EMR,
author = "Carolyn J. Anderson and Zhushan Li and Jeroen K.
Vermunt",
title = "Estimation of Models in a {Rasch} Family for
Polytomous Items and Multiple Latent Variables",
journal = j-J-STAT-SOFT,
volume = "20",
number = "6",
pages = "1--36",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v20/i06",
abstract = "The Rasch family of models considered in this paper
includes models for polytomous items and multiple
correlated latent traits, as well as for dichotomous
items and a single latent variable. An R package is
described that computes estimates of parameters and
robust standard errors of a class of
log-linear-by-linear association (LLLA) models, which
are derived from a Rasch family of models. The LLLA
models are special cases of log-linear models with
bivariate interactions. Maximum likelihood estimation
of LLLA models in this form is limited to relatively
small problems; however, pseudo-likelihood estimation
overcomes this limitation. Maximizing the
pseudo-likelihood function is achieved by maximizing
the likelihood of a single conditional multinomial
logistic regression model. The parameter estimates are
asymptotically normal and consistent. Based on our
simulation studies, the pseudo-likelihood and maximum
likelihood estimates of the parameters of LLLA models
are nearly identical and the loss of efficiency is
negligible. Recovery of parameters of Rasch models fit
to simulated data is excellent.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-07-26",
xxtitle = "Estimation of Models in a Rasch Family for Polytomous
Items and Multiple Latent Variables",
}
@Article{Fox:2007:MRR,
author = "Jean-Paul Fox and Rinke Klein Entink and Wim van der
Linden",
title = "Modeling of Responses and Response Times with the
Package \pkg{cirt}",
journal = j-J-STAT-SOFT,
volume = "20",
number = "7",
pages = "1--14",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v20/i07",
abstract = "In computerized testing, the test takers' responses as
well as their response times on the items are recorded.
The relationship between response times and response
accuracies is complex and varies over levels of
observation. For example, it takes the form of a
tradeoff between speed and accuracy at the level of a
fixed person but may become a positive correlation for
a population of test takers. In order to explore such
relationships and test hypotheses about them, a
conjoint model is proposed. Item responses are modeled
by a two-parameter normal-ogive IRT model and response
times by a lognormal model. The two models are combined
using a hierarchical framework based on the fact that
response times and responses are nested within
individuals. All parameters can be estimated
simultaneously using an MCMC estimation approach. A
R-package for the MCMC algorithm is presented and
explained.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
xxtitle = "Modeling of Responses and Response Times with the
Package cirt",
}
@Article{Kelley:2007:CIS,
author = "Ken Kelley",
title = "Confidence Intervals for Standardized Effect Sizes:
Theory, Application, and Implementation",
journal = j-J-STAT-SOFT,
volume = "20",
number = "8",
pages = "1--24",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v20/i08",
abstract = "The behavioral, educational, and social sciences are
undergoing a paradigmatic shift in methodology, from
disciplines that focus on the dichotomous outcome of
null hypothesis significance tests to disciplines that
report and interpret effect sizes and their
corresponding confidence intervals. Due to the
arbitrariness of many measurement instruments used in
the behavioral, educational, and social sciences, some
of the most widely reported effect sizes are
standardized. Although forming confidence intervals for
standardized effect sizes can be very beneficial, such
confidence interval procedures are generally difficult
to implement because they depend on noncentral $t$,
$F$, and $ x^2$ distributions. At present, no
main-stream statistical package provides exact
confidence intervals for standardized effects without
the use of specialized programming scripts. Methods for
the Behavioral, Educational, and Social Sciences
(MBESS) is an R package that has routines for
calculating confidence intervals for noncentral $t$,
$F$, and $ x^2$ distributions, which are then used in
the calculation of exact confidence intervals for
standardized effect sizes by using the confidence
interval transformation and inversion principles. The
present article discusses the way in which confidence
intervals are formed for standardized effect sizes and
illustrates how such confidence intervals can be easily
formed using MBESS in R.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-07-30",
xxtitle = "Confidence Intervals for Standardized Effect Sizes:
Theory, Application, and Implementation",
}
@Article{Mair:2007:ERM,
author = "Patrick Mair and Reinhold Hatzinger",
title = "Extended {Rasch} Modeling: The \pkg{eRm} Package for
the Application of {IRT} Models in {R}",
journal = j-J-STAT-SOFT,
volume = "20",
number = "9",
pages = "1--20",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v20/i09",
abstract = "Item response theory models (IRT) are increasingly
becoming established in social science research,
particularly in the analysis of performance or
attitudinal data in psychology, education, medicine,
marketing and other fields where testing is relevant.
We propose the R package \pkg{eRm} (extended Rasch
modeling) for computing Rasch models and several
extensions. A main characteristic of some IRT models,
the Rasch model being the most prominent, concerns the
separation of two kinds of parameters, one that
describes qualities of the subject under investigation,
and the other relates to qualities of the situation
under which the response of a subject is observed.
Using conditional maximum likelihood (CML) estimation
both types of parameters may be estimated independently
from each other. IRT models are well suited to cope
with dichotomous and polytomous responses, where the
response categories may be unordered as well as
ordered. The incorporation of linear structures allows
for modeling the effects of covariates and enables the
analysis of repeated categorical measurements. The
\pkg{eRm} package fits the following models: the Rasch
model, the rating scale model (RSM), and the partial
credit model (PCM) as well as linear
reparameterizations through covariate structures like
the linear logistic test model (LLTM), the linear
rating scale model (LRSM), and the linear partial
credit model (LPCM). We use an unitary, efficient CML
approach to estimate the item parameters and their
standard errors. Graphical and numeric tools for
assessing goodness-of-fit are provided.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
xxtitle = "Extended Rasch Modeling: The {eRm} Package for the
Application of {IRT} Models in R",
}
@Article{Johnson:2007:MML,
author = "Matthew S. Johnson",
title = "Marginal Maximum Likelihood Estimation of Item
Response Models in {R}",
journal = j-J-STAT-SOFT,
volume = "20",
number = "10",
pages = "1--24",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v20/i10",
abstract = "Item response theory (IRT) models are a class of
statistical models used by researchers to describe the
response behaviors of individuals to a set of
categorically scored items. The most common IRT models
can be classified as generalized linear fixed- and/or
mixed-effect models. Although IRT models appear most
often in the psychological testing literature,
researchers in other fields have successfully utilized
IRT-like models in a wide variety of applications. This
paper discusses the three major methods of estimation
in IRT and develops R functions utilizing the built-in
capabilities of the R environment to find the marginal
maximum likelihood estimates of the generalized partial
credit model. The currently available R packages
\pkg{ltm} is also discussed.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
xxtitle = "Marginal Maximum Likelihood Estimation of Item
Response Models in R",
}
@Article{vanderArk:2007:MSA,
author = "L. Andries van der Ark",
title = "{Mokken} Scale Analysis in {R}",
journal = j-J-STAT-SOFT,
volume = "20",
number = "11",
pages = "1--19",
month = feb,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v020.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v20/i11",
abstract = "Mokken scale analysis (MSA) is a scaling procedure for
both dichotomous and polytomous items. It consists of
an item selection algorithm to partition a set of items
into Mokken scales and several methods to check the
assumptions of two nonparametric item response theory
models: the monotone homogeneity model and the double
monotonicity model. First, we present an R package
mokken for MSA and explain the procedures. Second, we
show how to perform MSA in R using test data obtained
with the Adjective Checklist.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
xxtitle = "Mokken Scale Analysis in R",
}
@Article{Hilbe:2007:BRB,
author = "Joseph Hilbe",
title = "Book Review: {{\booktitle{Bayesian Core: A Practical
Approach to Bayesian Computational Statistics}}}",
journal = j-J-STAT-SOFT,
volume = "21",
number = "BR-1",
pages = "1--5",
month = jul,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-07-30; Accepted 2007-07-30",
}
@Article{Sabatti:2007:BRB,
author = "Chiara Sabatti",
title = "Book Review: {{\booktitle{The Statistics of Gene
Mapping}}}",
journal = j-J-STAT-SOFT,
volume = "21",
number = "BR-2",
pages = "1--2",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-03; Accepted 2007-09-03",
}
@Article{Gumprecht:2007:BRB,
author = "Daniela Gumprecht",
title = "Book Review: {{\booktitle{Model-based
Geostatistics}}}",
journal = j-J-STAT-SOFT,
volume = "21",
number = "BR-3",
pages = "1--2",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-03; Accepted 2007-09-03",
}
@Article{Myers:2007:CSE,
author = "James Myers and Shih-Feng Huang and Jhishen Tsay",
title = "Code Snippet: Exact Conditional Inference for Two-way
Randomized {Bernoulli} Experiments",
journal = j-J-STAT-SOFT,
volume = "21",
number = "CS-1",
pages = "1--7",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-14; Accepted 2007-09-02",
}
@Article{Atman:2007:ATA,
author = "Micah Atman and Jeff Gill and Michael P. McDonald",
title = "\pkg{accuracy}: Tools for Accurate and Reliable
Statistical Computing",
journal = j-J-STAT-SOFT,
volume = "21",
number = "1",
pages = "1--30",
month = jul,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i01",
abstract = "Most empirical social scientists are surprised that
low-level numerical issues in software can have
deleterious effects on the estimation process.
Statistical analyses that appear to be perfectly
successful can be invalidated by concealed numerical
problems. We have developed a set of tools, contained
in \pkg{accuracy}, a package for R and S-PLUS, to
diagnose problems stemming from numerical and
measurement error and to improve the accuracy of
inferences. The tools included in \pkg{accuracy}
include a framework for gauging the computational
stability of model results, tools for comparing model
results, optimization diagnostics, and tools for
collecting entropy for true random numbers
generation.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-02-28; Accepted 2007-06-25",
xxtitle = "accuracy: Tools for Accurate and Reliable Statistical
Computing",
}
@Article{Raimondo:2007:WTR,
author = "Marc Raimondo and Michael Stewart",
title = "The {WaveD} Transform in {R}: Performs Fast
Translation-Invariant Wavelet Deconvolution",
journal = j-J-STAT-SOFT,
volume = "21",
number = "2",
pages = "1--28",
month = jul,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i02",
abstract = "This paper provides an introduction to a software
package called waved making available all code
necessary for reproducing the figures in the recently
published articles on the WaveD transform for wavelet
deconvolution of noisy signals. The forward WaveD
transforms and their inverses can be computed using any
wavelet from the Meyer family. The WaveD coefficients
can be depicted according to time and resolution in
several ways for data analysis. The algorithm which
implements the translation invariant WaveD transform
takes full advantage of the fast Fourier transform
(FFT) and runs in $ O(n(\log n)^2) $ steps only. The
waved package includes functions to perform
thresholding and tne resolution tuning according to
methods in the literature as well as newly designed
visual and statistical tools for assessing WaveD fits.
We give a waved tutorial session and review benchmark
examples of noisy convolutions to illustrate the
non-linear adaptive properties of wavelet
deconvolution.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-03-06; Accepted 2007-04-20",
xxtitle = "The {WaveD} Transform in R: Performs Fast
Translation-Invariant Wavelet Deconvolution",
}
@Article{Zamar:2007:ESI,
author = "David Zamar and Brad McNeney and Jinko Graham",
title = "\pkg{elrm}: Software Implementing Exact-Like Inference
for Logistic Regression Models",
journal = j-J-STAT-SOFT,
volume = "21",
number = "3",
pages = "1--18",
month = oct,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/i03",
abstract = "Exact inference is based on the conditional
distribution of the sufficient statistics for the
parameters of interest given the observed values for
the remaining sufficient statistics. Exact inference
for logistic regression can be problematic when data
sets are large and the support of the conditional
distribution cannot be represented in memory.
Additionally, these methods are not widely implemented
except in commercial software packages such as LogXact
and SAS. Therefore, we have developed \pkg{elrm},
software for R implementing (approximate) exact
inference for binomial regression models from large
data sets. We provide a description of the underlying
statistical methods and illustrate the use of
\pkg{elrm} with examples. We also evaluate \pkg{elrm}
by comparing results with those obtained using other
methods.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-15; Accepted 2007-09-03",
xxtitle = "elrm: Software Implementing Exact-like Inference for
Logistic Regression Models",
}
@Article{Yan:2007:EJC,
author = "Jun Yan",
title = "Enjoy the Joy of Copulas: With a Package
\pkg{copula}",
journal = j-J-STAT-SOFT,
volume = "21",
number = "4",
pages = "1--21",
month = oct,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/i04",
abstract = "Copulas have become a popular tool in multivariate
modeling successfully applied in many fields. A good
open-source implementation of copulas is much needed
for more practitioners to enjoy the joy of copulas.
This article presents the design, features, and some
implementation details of the R package \pkg{copula}.
The package provides a carefully designed and easily
extensible platform for multivariate modeling with
copulas in R. S4 classes for most frequently used
elliptical copulas and Archimedean copulas are
implemented, with methods for density/distribution
evaluation, random number generation, and graphical
display. Fitting copula-based models with maximum
likelihood method is provided as template examples.
With the classes and methods in the package, the
package can be easily extended by user-defined copulas
and margins to solve problems.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-12-02; Accepted 2007-09-11",
xxtitle = "Enjoy the Joy of Copulas: With a Package copula",
}
@Article{Wehrens:2007:SSO,
author = "Ron Wehrens and Lutgarde M. C. Buydens",
title = "Self- and Super-organizing Maps in {R}: The
\pkg{kohonen} Package",
journal = j-J-STAT-SOFT,
volume = "21",
number = "5",
pages = "1--19",
month = oct,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i05",
abstract = "In this age of ever-increasing data set sizes,
especially in the natural sciences, visualisation
becomes more and more important. Self-organizing maps
have many features that make them attractive in this
respect: they do not rely on distributional
assumptions, can handle huge data sets with ease, and
have shown their worth in a large number of
applications. In this paper, we highlight the
\pkg{kohonen} package for R, which implements
self-organizing maps as well as some extensions for
supervised pattern recognition and data fusion.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-04; Accepted 2007-10-08",
xxtitle = "Self- and Super-organizing Maps in R: The kohonen
Package",
}
@Article{Somerville:2007:CCV,
author = "Paul N. Somerville",
title = "Calculation of Critical Values for {Somerville}'s
{FDR} Procedures",
journal = j-J-STAT-SOFT,
volume = "21",
number = "6",
pages = "1--14",
month = oct,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/i06",
abstract = "A Fortran 95 program has been written to calculate
critical values for the step-up and step-down FDR
procedures developed by Somerville (2004). The program
allows for arbitrary selection of number of hypotheses,
FDR rate, one- or two-sided hypotheses, common
correlation coefficient of the test statistics and
degrees of freedom. An MCV (minimum critical value) may
be specified, or the program will calculate a specified
number of critical values or steps in an FDR procedure.
The program can also be used to efficiently ascertain
an upper bound to the number of hypotheses which the
procedure will reject, given either the values of the
test statistics, or their p values. Limiting the number
of steps in an FDR procedure can be used to control the
number or proportion of false discoveries (Somerville
and Hemmelmann 2007). Using the program to calculate
the largest critical values makes possible efficient
use of the FDR procedures for very large numbers of
hypotheses.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-01-28; Accepted 2007-04-11",
xxtitle = "Calculation of Critical Values for Somerville's {FDR}
Procedures",
}
@Article{Duong:2007:KKD,
author = "Tarn Duong",
title = "\pkg{ks}: Kernel Density Estimation and Kernel
Discriminant Analysis for Multivariate Data in {R}",
journal = j-J-STAT-SOFT,
volume = "21",
number = "7",
pages = "1--16",
month = oct,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i07",
abstract = "Kernel smoothing is one of the most widely used
non-parametric data smoothing techniques. We introduce
a new R package \pkg{ks} for multivariate kernel
smoothing. Currently it contains functionality for
kernel density estimation and kernel discriminant
analysis. It is a comprehensive package for bandwidth
matrix selection, implementing a wide range of
data-driven diagonal and unconstrained bandwidth
selectors.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-03-04; Accepted 2007-09-12",
xxtitle = "ks: Kernel Density Estimation and Kernel Discriminant
Analysis for Multivariate Data in R",
}
@Article{Schmid:2007:BAP,
author = "Volker J. Schmid and Leonhard Held",
title = "{Bayesian} Age-Period-Cohort Modeling and Prediction
--- {BAMP}",
journal = j-J-STAT-SOFT,
volume = "21",
number = "8",
pages = "1--15",
month = oct,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/i08",
abstract = "The software package BAMP provides a method of
analyzing incidence or mortality data on the Lexis
diagram, using a Bayesian version of an
age-period-cohort model. A hierarchical model is
assumed with a binomial model in the first-stage. As
smoothing priors for the age, period and cohort
parameters random walks of first and second order, with
and without an additional unstructured component are
available. Unstructured heterogeneity can also be
included in the model. In order to evaluate the model
fit, posterior deviance, DIC and predictive deviances
are computed. By projecting the random walk prior into
the future, future death rates can be predicted.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-04; Accepted 2007-10-01",
xxtitle = "Bayesian Age-Period-Cohort Modeling and Prediction -
{BAMP}",
}
@Article{Su:2007:FSM,
author = "Steve Su",
title = "Fitting Single and Mixture of Generalized Lambda
Distributions to Data via Discretized and Maximum
Likelihood Methods: {GLDEX} in {R}",
journal = j-J-STAT-SOFT,
volume = "21",
number = "9",
pages = "1--17",
month = oct,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i09",
abstract = "This paper describes the use of GLDEX in R to fit
distributions to empirical data using the discretized
and maximum likelihood methods. The GLDEX package also
provides diagnostic tests to examine the quality of fit
through the resample Kolmogorov-Smirnoff test, quantile
plots and comparison of the mean, variance, skewness
and kurtosis between the empirical data and the fitted
distribution.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-11-07; Accepted 2007-09-15",
xxtitle = "Fitting Single and Mixture of Generalized Lambda
Distributions to Data via Discretized and Maximum
Likelihood Methods: {GLDEX} in R",
}
@Article{Nguyen:2007:NSE,
author = "Paul Nguyen",
title = "\pkg{nonbinROC}: Software for Evaluating Diagnostic
Accuracies with Non-Binary Gold Standards",
journal = j-J-STAT-SOFT,
volume = "21",
number = "10",
pages = "1--10",
month = nov,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/i10",
abstract = "ROC analysis is a standard method for estimating and
comparing diagnostic tests' accuracies when the gold
standard is binary. However, there are many situations
when the gold standard is not binary. In these
situations, traditional ROC methods applied have lead
to biased and uninformative outcomes. This article
introduces nonbinROC, software for R that implements
nonparametric estimators proposed by Obuchowski (2005)
for estimating and comparing diagnostic tests'
accuracies when the gold standard is measured on a
continuous, ordinal or nominal scale. The results
produced from these estimators are interpreted in the
same manner as in ROC analysis but are not associated
with any ROC curve.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-25; Accepted 2007-09-06",
xxtitle = "{nonbinROC}: Software for Evaluating Diagnostic
Accuracies with Non-Binary Gold Standards",
}
@Article{Smith:2007:PBR,
author = "Brian J. Smith",
title = "\pkg{boa}: An {R} Package for {MCMC} Output
Convergence Assessment and Posterior Inference",
journal = j-J-STAT-SOFT,
volume = "21",
number = "11",
pages = "1--37",
month = nov,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i11",
abstract = "Markov chain Monte Carlo (MCMC) is the most widely
used method of estimating joint posterior distributions
in Bayesian analysis. The idea of MCMC is to
iteratively produce parameter values that are
representative samples from the joint posterior. Unlike
frequentist analysis where iterative model fitting
routines are monitored for convergence to a single
point, MCMC output is monitored for convergence to a
distribution. Thus, specialized diagnostic tools are
needed in the Bayesian setting. To this end, the R
package \pkg{boa} was created. This manuscript presents
the user's manual for \pkg{boa}, which outlines the use
of and methodology upon which the software is based.
Included is a description of the menu system, data
management capabilities, and statistical/graphical
methods for convergence assessment and posterior
inference. Throughout the manual, a linear regression
example is used to illustrate the software.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-27; Accepted 2007-10-14",
xxtitle = "boa: An R Package for {MCMC} Output Convergence
Assessment and Posterior Inference",
}
@Article{Wickham:2007:RDR,
author = "Hadley Wickham",
title = "Reshaping Data with the \pkg{reshape} Package",
journal = j-J-STAT-SOFT,
volume = "21",
number = "12",
pages = "1--20",
month = nov,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v021.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v21/i12",
abstract = "This paper presents the \pkg{reshape} package for R,
which provides a common framework for many types of
data reshaping and aggregation. It uses a paradigm of
melting' and 'casting', where the data are 'melted'
into a form which distinguishes measured and
identifying variables, and then 'cast' into a new
shape, whether it be a data frame, list, or high
dimensional array. The paper includes an introduction
to the conceptual framework, practical advice for
melting and casting, and a case study.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-25; Accepted 2007-09-15",
xxtitle = "Reshaping Data with the reshape Package",
}
@Article{Kneib:2007:ISV,
author = "Thomas Kneib and Thomas Petzoldt",
title = "Introduction to the Special Volume on {{\em ``Ecology
and Ecological Modeling in R''}}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "1",
pages = "1--7",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v22/i01",
abstract = "The third special volume in the ``Foometrics in R''
series of the Journal of Statistical Software collects
a number of contributions describing statistical
methodology and corresponding implementations related
to ecology and ecological modelling. The scope of the
papers ranges from theoretical ecology and ecological
modelling to statistical methodology relevant for data
analyses in ecological applications.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-13; Accepted 2007-09-13",
xxtitle = "Introduction to the Special Volume on ``Ecology and
Ecological Modelling in R''",
}
@Article{Simpson:2007:AMP,
author = "Gavin L. Simpson",
title = "Analogue Methods in Palaeoecology: Using the
\pkg{analogue} Package",
journal = j-J-STAT-SOFT,
volume = "22",
number = "2",
pages = "1--29",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v22/i02",
abstract = "Palaeoecology is an important branch of ecology that
uses the subfossil remains of organisms preserved in
lake, ocean and bog sediments to inform on changes in
ecosystems and the environment through time. The
\pkg{analogue} package contains functions to perform
modern analogue technique (MAT) transfer functions,
which can be used to predict past changes in the
environment, such as climate or lake-water pH from
species data. A related technique is that of analogue
matching, which is concerned with identifying modern
sites that are floristically and faunistically similar
to fossil samples. These techniques, and others, are
increasingly being used to inform public policy on
environmental pollution and conservation practices.
These methods and other functionality in \pkg{analogue}
are illustrated using the Surface Waters Acidification
Project diatom:pH training set and diatom counts on
samples of a sediment core from the Round Loch of
Glenhead, Galloway, Scotland. The paper is aimed at
palaeoecologists who are familiar with the techniques
described but not with R.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-15; Accepted 2007-08-06",
xxtitle = "Analogue Methods in Palaeoecology: Using the analogue
Package",
}
@Article{Yuan:2007:MLM,
author = "Lester L. Yuan",
title = "Maximum Likelihood Method for Predicting Environmental
Conditions from Assemblage Composition: The {R} Package
\pkg{bio.infer}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "3",
pages = "1--20",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i03",
abstract = "This paper provides a brief introduction to the R
package \pkg{bio.infer}, a set of scripts that
facilitates the use of maximum likelihood (ML) methods
for predicting environmental conditions from assemblage
composition. Environmental conditions can often be
inferred from only biological data, and these
inferences are useful when other sources of data are
unavailable. ML prediction methods are statistically
rigorous and applicable to a broader set of problems
than more commonly used weighted averaging techniques.
However, ML methods require a substantially greater
investment of time to program algorithms and to perform
computations. This package is designed to reduce the
effort required to apply ML prediction methods.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-10; Accepted 2007-06-22",
xxtitle = "Maximum Likelihood Method for Predicting Environmental
Conditions from Assemblage Composition: The R Package
bio.infer",
}
@Article{Dray:2007:API,
author = "St{\'e}phane Dray and Anne-B{\'e}atrice Dufour",
title = "The \pkg{ade4} Package: Implementing the Duality
Diagram for Ecologists",
journal = j-J-STAT-SOFT,
volume = "22",
number = "4",
pages = "1--20",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v22/i04",
abstract = "Multivariate analyses are well known and widely used
to identify and understand structures of ecological
communities. The \pkg{ade4} package for the R
statistical environment proposes a great number of
multivariate methods. Its implementation follows the
tradition of the French school of ``Analyse des
Donn{\'e}es'' and is based on the use of the duality
diagram. We present the theory of the duality diagram
and discuss its implementation in \pkg{ade4}. Classes
and main functions are presented. An example is given
to illustrate the \pkg{ade4} philosophy.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-13; Accepted 2007-06-04",
xxtitle = "The ade4 Package: Implementing the Duality Diagram for
Ecologists",
}
@Article{Thioulouse:2007:IMD,
author = "Jean Thioulouse and St{\'e}phane Dray",
title = "Interactive Multivariate Data Analysis in {R} with the
\pkg{ade4} and \pkg{ade4TkGUI} Packages",
journal = j-J-STAT-SOFT,
volume = "22",
number = "5",
pages = "1--14",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i05",
abstract = "\pkg{ade4} is a multivariate data analysis package for
the R statistical environment, and \pkg{ade4TkGUI} is a
Tcl/Tk graphical user interface for the most essential
methods of \pkg{ade4}. Both packages are available on
CRAN. An overview of \pkg{ade4TkGUI} is presented, and
the pros and cons of this approach are discussed. We
conclude that command line interfaces (CLI) and
graphical user interfaces (GUI) are complementary.
\pkg{ade4TkGUI} can be valuable for biologists and
particularly for ecologists who are often occasional
users of R. It can spare them having to acquire an
in-depth knowledge of R, and it can help first time
users in a first approach.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-08; Accepted 2007-10-02",
xxtitle = "Interactive Multivariate Data Analysis in R with the
ade4 and ade4TkGUI Packages",
}
@Article{Calenge:2007:EHS,
author = "Cl{\'e}ment Calenge",
title = "Exploring Habitat Selection by Wildlife with
\pkg{adehabitat}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "6",
pages = "1--19",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v22/i06",
abstract = "Knowledge of the environmental features affecting
habitat selection by animals is important for designing
wildlife management and conservation policies. The
package \pkg{adehabitat} for the R software is designed
to provide a computing environment for the analysis and
modelling of such relationships. This paper focuses on
the preliminary steps of data exploration and analysis,
performed prior to a more formal modelling of habitat
selection. In this context, I illustrate the use of a
factorial analysis, the K-select analysis. This method
is a factorial decomposition of marginality, one
measure of habitat selection. This method was chosen to
present the package because it illustrates clearly many
of its features (home range estimation, spatial
analyses, graphical possibilities, etc.). I strongly
stress the powerful capabilities of factorial methods
for data analysis, using as an example the analysis of
habitat selection by the wild boar (Sus scrofa L.) in a
Mediterranean environment.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-18; Accepted 2007-07-05",
xxtitle = "Exploring Habitat Selection by Wildlife with
adehabitat",
}
@Article{Goslee:2007:EPD,
author = "Sarah C. Goslee and Dean L. Urban",
title = "The \pkg{ecodist} Package for Dissimilarity-based
Analysis of Ecological Data",
journal = j-J-STAT-SOFT,
volume = "22",
number = "7",
pages = "1--19",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v22/i07",
abstract = "Ecologists are concerned with the relationships
between species composition and environmental framework
incorporating space explicitly is an extremely flexible
tool for answering these questions. The R package
\pkg{ecodist} brings together methods for working with
dissimilarities, including some not available in other
R packages. We present some of the features of
\pkg{ecodist}, particularly simple and partial Mantel
tests, and make recommendations for their effective
use. Although the partial Mantel test is often used to
account for the effects of space, the assumption of
linearity greatly reduces its effectiveness for complex
spatial patterns. We introduce a modification of the
Mantel correlogram designed to overcome this
restriction and allow consideration of complex
nonlinear structures. This extension of the method
allows the use of partial multivariate correlograms and
tests of relationship between variables at different
spatial scales. Some of the possibilities are
demonstrated using both artificial data and data from
an ongoing study of plant community composition in
grazing lands of the northeastern United States.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-09; Accepted 2007-06-11",
xxtitle = "The ecodist Package for Dissimilarity-based Analysis
of Ecological Data",
}
@Article{Jachner:2007:SMQ,
author = "Stefanie Jachner and K. Gerald van den Boogaart and
Thomas Petzoldt",
title = "Statistical Methods for the Qualitative Assessment of
Dynamic Models with Time Delay ({R} Package
\pkg{qualV})",
journal = j-J-STAT-SOFT,
volume = "22",
number = "8",
pages = "1--30",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i08",
abstract = "Results of ecological models differ, to some extent,
more from measured data than from empirical knowledge.
Existing techniques for validation based on
quantitative assessments sometimes cause an
underestimation of the performance of models due to
time shifts, accelerations and delays or systematic
differences between measurement and simulation.
However, for the application of such models it is often
more important to reproduce essential patterns instead
of seemingly exact numerical values. This paper
presents techniques to identify patterns and numerical
methods to measure the consistency of patterns between
observations and model results. An orthogonal set of
deviance measures for absolute, relative and ordinal
scale was compiled to provide informations about the
type of difference. Furthermore, two different
approaches accounting for time shifts were presented.
The first one transforms the time to take time delays
and speed differences into account. The second one
describes known qualitative criteria dividing time
series into interval units in accordance to their main
features. The methods differ in their basic concepts
and in the form of the resulting criteria. Both
approaches and the deviance measures discussed are
implemented in an R package. All methods are
demonstrated by means of water quality measurements and
simulation data. The proposed quality criteria allow to
recognize systematic differences and time shifts
between time series and to conclude about the
quantitative and qualitative similarity of patterns.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-26; Accepted 2007-06-25",
xxtitle = "Statistical Methods for the Qualitative Assessment of
Dynamic Models with Time Delay ( R Package {qualV} )",
}
@Article{Petzoldt:2007:SOO,
author = "Thomas Petzoldt and Karsten Rinke",
title = "\pkg{simecol}: An Object-Oriented Framework for
Ecological Modeling in {R}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "9",
pages = "1--31",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i09",
abstract = "The \pkg{simecol} package provides an open structure
to implement, simulate and share ecological models. A
generalized object-oriented architecture improves
readability and potential code re-use of models and
makes \pkg{simecol}-models freely extendible and simple
to use. The \pkg{simecol} package was implemented in
the S4 class system of the programming language R.
Reference applications, e.g. predator-prey models or
grid models are provided which can be used as a
starting point for own developments. Compact example
applications and the complete code of an
individual-based model of the water flea Daphnia
document the efficient usage of \pkg{simecol} for
various purposes in ecological modeling, e.g. scenario
analysis, stochastic simulations and individual based
population dynamics. Ecologists are encouraged to
exploit the abilities of \pkg{simecol} to structure
their work and to use R and object-oriented programming
as a suitable medium for the distribution and share of
ecological modeling code.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-21; Accepted 2007-06-08",
xxtitle = "simecol: An Object-Oriented Framework for Ecological
Modeling in R",
}
@Article{Jones:2007:DPC,
author = "James Holland Jones",
title = "\pkg{demogR}: a Package for the Construction and
Analysis of Age-structured Demographic Models in {R}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "10",
pages = "1--28",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i10",
abstract = "The analysis of matrix population models has become a
fundamental tool in ecology, conservation biology, and
life history theory. In this paper, I present
\pkg{demogR}, a package for analyzing age-structured
population models in R. The package includes tools for
the construction and analysis of matrix population
models. In addition to the standard analyses commonly
used in evolutionary demography and conservation
biology, \pkg{demogR} contains a variety of tools from
classical demography. This includes the construction of
period life tables, and the generation of model
mortality and fertility schedules for human
populations. The tools in \pkg{demogR} are generally
applicable to age-structured populations but are
particularly useful for analyzing problems in human
ecology. I illustrate some of the capabilities of the
package by doing an evolutionary demographic analysis
of several human populations.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-17; Accepted 2007-08-28",
xxtitle = "{demogR}: A Package for the Construction and Analysis
of Age-structured Demographic Models in R",
}
@Article{Stubben:2007:EAD,
author = "Chris Stubben and Brook Milligan",
title = "Estimating and Analyzing Demographic Models Using the
\pkg{popbio} Package in {R}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "11",
pages = "1--23",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i11",
abstract = "A complete assessment of population growth and
viability from field census data often requires complex
data manipulations, statistical routines, mathematical
tools, programming environments, and graphical
capabilities. We therefore designed an R package called
\pkg{popbio} to facilitate both the construction and
analysis of projection matrix models. The package
consists primarily of the R translation of MATLAB code
found in Caswell (2001) and Morris and Doak (2002) for
the analysis of projection matrix models. The package
also includes methods to estimate vital rates and
construct projection matrix models from census data
typically collected in plant demography studies. In
these studies, vital rates can often be estimated
directly from annual censuses of tagged individuals
using transition frequency tables. Because the
construction of projection matrix models requires
careful management of census data, we describe the
steps to construct a projection matrix in detail.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-16; Accepted 2007-08-28",
xxtitle = "Estimating and Analyzing Demographic Models Using the
popbio Package in R",
}
@Article{Hankin:2007:IUR,
author = "Robin K. S. Hankin",
title = "Introducing \pkg{untb}, an {R} Package For Simulating
Ecological Drift Under the Unified Neutral Theory of
Biodiversity",
journal = j-J-STAT-SOFT,
volume = "22",
number = "12",
pages = "1--15",
month = sep,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v022.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i12",
abstract = "The distribution of abundance amongst species with
similar ways of life is a classical problem in ecology.
The unified neutral theory of biodiversity, due to
Hubbell, states that observed population dynamics may
be explained on the assumption of per capita
equivalence amongst individuals. One can thus dispense
with differences between species, and differences
between abundant and rare species: a ll individuals
behave alike in respect of their probabilities of
reproducing and death. It is a striking fact that such
a parsimonious theory results in a non-trivial
dominance-diversity curve (that is, the simultaneous
existence of both abundant and rare species) and even
more striking that the theory predicts abundance curves
that match observations across a wide range of
ecologies. This paper introduces the \pkg{untb} package
of R routines, for numerical simulation of ecological
drift under the unified neutral theory. A range of
visualization, analytical, and simulation tools are
provided in the package and these are presented with
examples in the paper.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-08-31; Accepted 2007-06-15",
xxtitle = "Introducing untb, an R Package For Simulating
Ecological Drift Under the Unified Neutral Theory of
Biodiversity",
}
@Article{Hughett:2007:CSA,
author = "Paul Hughett",
title = "Code Snippet: Accurate Computation of the {F-to-z} and
t-to-z Transforms for Large Arguments",
journal = j-J-STAT-SOFT,
volume = "23",
number = "CS-1",
pages = "1--5",
month = nov,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v23/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-28; Accepted 2007-10-27",
}
@Article{Hankin:2007:CSS,
author = "Robin K. S. Hankin and Luke J. West",
title = "Code Snippet: Set Partitions in {R}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "CS-2",
pages = "1--12",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.c02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-08-29; Accepted 2007-12-11",
}
@Article{Yaffee:2007:SRS,
author = "Robert Alan Yaffee",
title = "Software Review: {{\em Stata 10 (Time Series and
Forecasting)}}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "SR-1",
pages = "1--18",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.s01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v23/s01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-12-12; Accepted 2007-12-12",
}
@Article{Brouste:2007:FGR,
author = "Alexandre Brouste and Jacques Istas and Sophie
Lambert-Lacroix",
title = "On Fractional {Gaussian} Random Fields Simulations",
journal = j-J-STAT-SOFT,
volume = "23",
number = "1",
pages = "1--23",
month = nov,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v23/i01",
abstract = "To simulate Gaussian fields poses serious numerical
problems: storage and computing time. The midpoint
displacement method is often used for simulating the
fractional Brownian fields because it is fast. We
propose an effective and fast method, valid not only
for fractional Brownian fields, but for any Gaussian
fields. First, our method is compared with midpoint for
fractional Brownian fields. Second, the performance of
our method is illustrated by simulating several
Gaussian fields. The software FieldSim is an R package
developed in R and C and that implements the procedures
on which this paper focuses.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-06; Accepted 2007-11-15",
xxtitle = "On Fractional Gaussian Random Fields Simulations",
}
@Article{Hahsler:2007:TIT,
author = "Michael Hahsler and Kurt Hornik",
title = "{TSP} --- Infrastructure for the Traveling Salesperson
Problem",
journal = j-J-STAT-SOFT,
volume = "23",
number = "2",
pages = "1--21",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v23/i02",
abstract = "The traveling salesperson (or, salesman) problem (TSP)
is a well known and important combinatorial
optimization problem. The goal is to find the shortest
tour that visits each city in a given list exactly once
and then returns to the starting city. Despite this
simple problem statement, solving the TSP is difficult
since it belongs to the class of NP-complete problems.
The importance of the TSP arises besides from its
theoretical appeal from the variety of its
applications. Typical applications in operations
research include vehicle routing, computer wiring,
cutting wallpaper and job sequencing. The main
application in statistics is combinatorial data
analysis, e.g., reordering rows and columns of data
matrices or identifying clusters. In this paper, we
introduce the R package TSP which provides a basic
infrastructure for handling and solving the traveling
salesperson problem. The package features S3 classes
for specifying a TSP and its (possibly optimal)
solution as well as several heuristics to find good
solutions. In addition, it provides an interface to
Concorde, one of the best exact TSP solvers currently
available.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-12-21; Accepted 2007-11-24",
xxtitle = "{TSP} - Infrastructure for the Traveling Salesperson
Problem",
}
@Article{Erdman:2007:BRP,
author = "Chandra Erdman and John W. Emerson",
title = "\pkg{bcp}: An {R} Package for Performing a {Bayesian}
Analysis of Change Point Problems",
journal = j-J-STAT-SOFT,
volume = "23",
number = "3",
pages = "1--13",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i03",
abstract = "Barry and Hartigan (1993) propose a Bayesian analysis
for change point problems. We provide a brief summary
of selected work on change point problems, both
preceding and following Barry and Hartigan. We outline
Barry and Hartigan's approach and offer a new R
package, \pkg{pkgbcp} (Erdman and Emerson 2007),
implementing their analysis. We discuss two frequentist
alternatives to the Bayesian analysis, the recursive
circular binary segmentation algorithm (Olshen and
Venkatraman 2004) and the dynamic programming algorithm
of (Bai and Perron 2003). We illustrate the application
of \pkg{bcp} with economic and microarray data from the
literature.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-02; Accepted 2007-11-27",
xxtitle = "bcp: An R Package for Performing a Bayesian Analysis
of Change Point Problems",
}
@Article{Henningsen:2007:SPE,
author = "Arne Henningsen and Jeff D. Hamann",
title = "\pkg{systemfit}: a Package for Estimating Systems of
Simultaneous Equations in {R}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "4",
pages = "1--40",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i04",
abstract = "Many statistical analyses (e.g., in econometrics,
biostatistics and experimental design) are based on
models containing systems of structurally related
equations. The \pkg{systemfit} package provides the
capability to estimate systems of linear equations
within the R programming environment. For instance,
this package can be used for ``ordinary least squares''
(OLS), ``seemingly unrelated regression'' (SUR), and
the instrumental variable (IV) methods ``two-stage
least squares'' (2SLS) and ``three-stage least
squares'' (3SLS), where SUR and 3SLS estimations can
optionally be iterated. Furthermore, the
\pkg{systemfit} package provides tools for several
statistical tests. It has been tested on a variety of
datasets and its reliability is demonstrated.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-03-15; Accepted 2007-10-24",
xxtitle = "systemfit: A Package for Estimating Systems of
Simultaneous Equations in R",
}
@Article{McLeod:2007:ALT,
author = "A. Ian McLeod and Hao Yu and Zinovi L. Krougly",
title = "Algorithms for Linear Time Series Analysis: With {R}
Package",
journal = j-J-STAT-SOFT,
volume = "23",
number = "5",
pages = "1--26",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i05",
abstract = "Our \pkg{ltsa} package implements the Durbin-Levinson
and Trench algorithms and provides a general approach
to the problems of fitting, forecasting and simulating
linear time series models as well as fitting regression
models with linear time series errors. For
computational efficiency both algorithms are
implemented in C and interfaced to R. Examples are
given which illustrate the efficiency and accuracy of
the algorithms. We provide a second package FGN which
illustrates the use of the \pkg{ltsa} package with
fractional Gaussian noise (FGN). It is hoped that the
\pkg{ltsa} will provide a base for further time series
software.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-14; Accepted 2007-11-11",
remark = "Describes package \pkg{ltsa}.",
xxtitle = "Algorithms for Linear Time Series Analysis: With R
Package",
}
@Article{Hojsgaard:2007:IGG,
author = "S{\o}ren H{\o}jsgaard and Steffen L. Lauritzen",
title = "Inference in Graphical {Gaussian} Models with Edge and
Vertex Symmetries with the \pkg{gRc} Package for {R}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "6",
pages = "1--26",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i06",
abstract = "In this paper we present the R package \pkg{gRc} for
statistical inference in graphical Gaussian models in
which symmetry restrictions have been imposed on the
concentration or partial correlation matrix. The models
are represented by coloured graphs where parameters
associated with edges or vertices of same colour are
restricted to being identical. We describe algorithms
for maximum likelihood estimation and discuss model
selection issues. The paper illustrates the practical
use of the \pkg{gRc} package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-20; Accepted 2007-09-06",
xxtitle = "Inference in Graphical Gaussian Models with Edge and
Vertex Symmetries with the {gRc} Package for R",
}
@Article{Stasinopoulos:2007:GAM,
author = "D. Mikis Stasinopoulos and Robert A. Rigby",
title = "Generalized Additive Models for Location Scale and
Shape ({GAMLSS}) in {R}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "7",
pages = "1--46",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i07",
abstract = "GAMLSS is a general framework for fitting regression
type models where the distribution of the response
variable does not have to belong to the exponential
family and includes highly skew and kurtotic continuous
and discrete distribution. GAMLSS allows all the
parameters of the distribution of the response variable
to be modeled as linear/non-linear or smooth functions
of the explanatory variables. This paper starts by
defining the statistical framework of GAMLSS, then
describes the current implementation of GAMLSS in R and
finally gives four different data examples to
demonstrate how GAMLSS can be used for statistical
modelling.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-07-19; Accepted 2007-11-28",
xxtitle = "Generalized Additive Models for Location Scale and
Shape ({GAMLSS}) in R",
}
@Article{Zhao:2007:GGA,
author = "Jing Hua Zhao",
title = "\pkg{gap}: Genetic Analysis Package",
journal = j-J-STAT-SOFT,
volume = "23",
number = "8",
pages = "1--18",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v23/i08",
abstract = "A preliminary attempt at collecting tools and
utilities for genetic data as an R package called
\pkg{gap} is described. Genomewide association is then
described as a specific example, linking the work of
Risch and Merikangas (1996), Long and Langley (1997)
for family-based and population-based studies, and the
counterpart for case-cohort design established by Cai
and Zeng (2004). Analysis of staged design as outlined
by Skol et al. (2006) and associate methods are
discussed. The package is flexible, customizable, and
should prove useful to researchers especially in its
application to genome-wide association studies.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-03; Accepted 2007-06-08",
xxtitle = "gap: Genetic Analysis Package",
}
@Article{Smith:2007:WSM,
author = "Michael K. Smith and Helen Richardson",
title = "{WinBUGSio}: a {SAS} Macro for the Remote Execution of
{WinBUGS}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "9",
pages = "1--10",
month = dec,
year = "2007",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v23/i09",
abstract = "This is a macro which facilitates remote execution of
WinBUGS from within SAS. The macro pre-processes data
for WinBUGS, writes the WinBUGS batch-script, executes
this script and reads in output statistics from the
WinBUGS log-file back into SAS native format. The user
specifies the input and output file names and directory
path as well as the statistics to be monitored in
WinBUGS. The code works best for a model that has
already been set up and checked for convergence
diagnostics within WinBUGS. An obvious extension of the
use of this macro is for running simulations where the
input and output files all have the same name but all
that differs between simulation iterations is the input
dataset. The functionality and syntax of the macro call
are described in this paper and illustrated using a
simple linear regression model.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-12-16; Accepted 2007-09-07",
xxtitle = "{WinBUGSio}: A {SAS} Macro for the Remote Execution of
{WinBUGS}",
}
@Article{Crookston:2008:YRP,
author = "Nicholas L. Crookston and Andrew O. Finley",
title = "\pkg{yaImpute}: An {R} Package for {kNN} Imputation",
journal = j-J-STAT-SOFT,
volume = "23",
number = "10",
pages = "1--16",
month = jan,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i10",
abstract = "This article introduces \pkg{yaImpute}, an R package
for nearest neighbor search and imputation. Although
nearest neighbor imputation is used in a host of
disciplines, the methods implemented in the
\pkg{yaImpute} package are tailored to imputation-based
forest attribute estimation and mapping. The impetus to
writing the \pkg{yaImpute} is a growing interest in
nearest neighbor imputation methods for spatially
explicit forest inventory, and a need within this
research community for software that facilitates
comparison among different nearest neighbor search
algorithms and subsequent imputation techniques.
\pkg{yaImpute} provides directives for defining the
search space, subsequent distance calculation, and
imputation rules for a given number of nearest
neighbors. Further, the package offers a suite of
diagnostics for comparison among results generated from
different imputation analyses and a set of functions
for mapping imputation results.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-20; Accepted 2007-10-10",
xxtitle = "{yaImpute}: An R Package for k {NN} Imputation",
}
@Article{Freeman:2008:PRP,
author = "Elizabeth A. Freeman and Gretchen Moisen",
title = "\pkg{PresenceAbsence}: An {R} Package for Presence
Absence Analysis",
journal = j-J-STAT-SOFT,
volume = "23",
number = "11",
pages = "1--31",
month = jan,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i11",
abstract = "The \pkg{PresenceAbsence} package for R provides a set
of functions useful when evaluating the results of
presence-absence analysis, for example, models of
species distribution or the analysis of diagnostic
tests. The package provides a toolkit for selecting the
optimal threshold for translating a probability surface
into presence-absence maps specifically tailored to
their intended use. The package includes functions for
calculating threshold dependent measures such as
confusion matrices, percent correctly classified (PCC),
sensitivity, specificity, and Kappa, and produces plots
of each measure as the threshold is varied. It also
includes functions to plot the Receiver Operator
Characteristic (ROC) curve and calculates the
associated area under the curve (AUC), a threshold
independent measure of model quality. Finally, the
package computes optimal thresholds by multiple
criteria, and plots these optimized thresholds on the
graphs.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-19; Accepted 2008-01-08",
xxtitle = "{PresenceAbsence}: An R Package for Presence Absence
Analysis",
}
@Article{Gonzalez:2008:CRP,
author = "Ignacio Gonz{\'a}lez and S{\'e}bastien D{\'e}jean and
Pascal G. P. Martin and Alain Baccini",
title = "\pkg{CCA}: An {R} Package to Extend Canonical
Correlation Analysis",
journal = j-J-STAT-SOFT,
volume = "23",
number = "12",
pages = "1--14",
month = jan,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v023.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i12",
abstract = "Canonical correlations analysis (CCA) is an
exploratory statistical method to highlight
correlations between two data sets acquired on the same
experimental units. The {\tt cancor()} function in R (R
Development Core Team 2007) performs the core of
computations but further work was required to provide
the user with additional tools to facilitate the
interpretation of the results. We implemented an R
package, \pkg{CCA}, freely available from the
Comprehensive R Archive Network (CRAN,
\path=http://CRAN.R-project.org/=), to develop
numerical and graphical outputs and to enable the user
to handle missing values. The \pkg{CCA} package also
includes a regularized version of \pkg{CCA} to deal
with data sets with more variables than units.
Illustrations are given through the analysis of a data
set coming from a nutrigenomic study in the mouse.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-03-20; Accepted 2007-12-04",
xxtitle = "{CCA}: An R Package to Extend Canonical Correlation
Analysis",
}
@Article{Handcock:2008:SST,
author = "Mark S. Handcock and David R. Hunter and Carter T.
Butts and Steven M. Goodreau and Martina Morris",
title = "\pkg{statnet}: Software Tools for the Representation,
Visualization, Analysis and Simulation of Network
Data",
journal = j-J-STAT-SOFT,
volume = "24",
number = "1",
pages = "1--11",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v024.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v24/i01",
abstract = "\pkg{statnet} is a suite of software packages for
statistical network analysis. The packages implement
recent advances in network modeling based on
exponential-family random graph models (ERGM). The
components of the package provide a comprehensive
framework for ERGM-based network modeling, including
tools for model estimation, model evaluation,
model-based network simulation, and network
visualization. This broad functionality is powered by a
central Markov chain Monte Carlo (MCMC) algorithm. The
coding is optimized for speed and robustness.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-01; Accepted 2007-12-25",
xxtitle = "statnet: Software Tools for the Representation,
Visualization, Analysis and Simulation of Network
Data",
}
@Article{Butts:2008:NPM,
author = "Carter T. Butts",
title = "\pkg{network}: a Package for Managing Relational Data
in {R}",
journal = j-J-STAT-SOFT,
volume = "24",
number = "2",
pages = "1--36",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v024.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v24/i02",
abstract = "Effective memory structures for relational data within
R must be capable of representing a wide range of data
while keeping overhead to a minimum. The \pkg{network}
package provides a class which may be used for encoding
complex relational structures composed a vertex set
together with any combination of undirected/directed,
valued/unvalued, dyadic/hyper, and single/multiple
edges; storage requirements are on the order of the
number of edges involved. Some simple constructor,
interface, and visualization functions are provided, as
well as a set of operators to facilitate employment by
end users. The package also supports a C-language API,
which allows developers to work directly with
\pkg{network} objects within backend code.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-01; Accepted 2007-12-25",
xxtitle = "network: A Package for Managing Relational Data in R",
}
@Article{Hunter:2008:EPF,
author = "David R. Hunter and Mark S. Handcock and Carter T.
Butts and Steven M. Goodreau and Martina Morris",
title = "\pkg{ergm}: a Package to Fit, Simulate and Diagnose
Exponential-Family Models for Networks",
journal = j-J-STAT-SOFT,
volume = "24",
number = "3",
pages = "1--29",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v024.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v24/i03",
abstract = "We describe some of the capabilities of the \pkg{ergm}
package and the statistical theory underlying it. This
package contains tools for accomplishing three
important, and inter-related, tasks involving
exponential-family random graph models (ERGMs):
estimation, simulation, and goodness of fit. More
precisely, \pkg{ergm} has the capability of
approximating a maximum likelihood estimator for an
ERGM given a network data set; simulating new network
data sets from a fitted ERGM using Markov chain Monte
Carlo; and assessing how well a fitted ERGM does at
capturing characteristics of a particular network data
set.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-01; Accepted 2007-12-25",
xxtitle = "ergm: A Package to Fit, Simulate and Diagnose
Exponential-Family Models for Networks",
}
@Article{Morris:2008:SEF,
author = "Martina Morris and Mark S. Handcock and David R.
Hunter",
title = "Specification of Exponential-Family Random Graph
Models: Terms and Computational Aspects",
journal = j-J-STAT-SOFT,
volume = "24",
number = "4",
pages = "1--24",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v024.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v24/i04",
abstract = "Exponential-family random graph models (ERGMs)
represent the processes that govern the formation of
links in networks through the terms selected by the
user. The terms specify network statistics that are
sufficient to represent the probability distribution
over the space of networks of that size. Many classes
of statistics can be used. In this article we describe
the classes of statistics that are currently available
in the \pkg{ergm} package. We also describe means for
controlling the Markov chain Monte Carlo (MCMC)
algorithm that the package uses for estimation. These
controls affect either the proposal distribution on the
sample space used by the underlying
Metropolis--Hastings algorithm or the constraints on
the sample space itself. Finally, we describe various
other arguments to core functions of the \pkg{ergm}
package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-01; Accepted 2007-12-25",
xxtitle = "Specification of Exponential-Family Random Graph
Models: Terms and Computational Aspects",
}
@Article{Krivitsky:2008:FLC,
author = "Pavel N. Krivitsky and Mark S. Handcock",
title = "Fitting Latent Cluster Models for Networks with
\pkg{latentnet}",
journal = j-J-STAT-SOFT,
volume = "24",
number = "5",
pages = "1--23",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v024.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v24/i05",
abstract = "\pkg{latentnet} is a package to fit and evaluate
statistical latent position and cluster models for
networks. Hoff, Raftery, and Handcock (2002) suggested
an approach to modeling networks based on positing the
existence of a latent space of characteristics of the
actors. Relationships form as a function of distances
between these characteristics as well as functions of
observed dyadic level covariates. In \pkg{latentnet}
social distances are represented in a Euclidean space.
It also includes a variant of the extension of the
latent position model to allow for clustering of the
positions developed in Handcock, Raftery, and Tantrum
(2007).\par
The package implements Bayesian inference for the
models based on an Markov chain Monte Carlo algorithm.
It can also compute maximum likelihood estimates for
the latent position model and a two-stage maximum
likelihood method for the latent position cluster
model. For latent position cluster models, the package
provides a Bayesian way of assessing how many groups
there are, and thus whether or not there is any
clustering (since if the preferred number of groups is
1, there is little evidence for clustering). It also
estimates which cluster each actor belongs to. These
estimates are probabilistic, and provide the
probability of each actor belonging to each cluster. It
computes four types of point estimates for the
coefficients and positions: maximum likelihood
estimate, posterior mean, posterior mode and the
estimator which minimizes Kullback--Leibler divergence
from the posterior. You can assess the goodness-of-fit
of the model via posterior predictive checks. It has a
function to simulate networks from a latent position or
latent position cluster model.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-01; Accepted 2007-12-25",
xxtitle = "Fitting Position Latent Cluster Models for Social
Networks with latentnet",
}
@Article{Butts:2008:SNA,
author = "Carter T. Butts",
title = "Social Network Analysis with \pkg{sna}",
journal = j-J-STAT-SOFT,
volume = "24",
number = "6",
pages = "1--51",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v024.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v24/i06",
abstract = "Modern social network analysis---the analysis of
relational data arising from social systems---is a
computationally intensive area of research. Here, we
provide an overview of a software package which
provides support for a range of network analytic
functionality within the R statistical computing
environment. General categories of currently supported
functionality are described, and brief examples of
package syntax and usage are shown.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-01; Accepted 2007-12-25",
xxtitle = "Social Network Analysis with sna",
}
@Article{Bender-deMol:2008:PPM,
author = "Skye Bender-deMoll and Martina Morris and James
Moody",
title = "Prototype Packages for Managing and Animating
Longitudinal Network Data: \pkg{dynamicnetwork} and
\pkg{rSoNIA}",
journal = j-J-STAT-SOFT,
volume = "24",
number = "7",
pages = "1--36",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v024.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v24/i07",
abstract = "Work with longitudinal network survey data and the
dynamic network outputs of the \pkg{statnet} ERGMs has
demonstrated the need for consistent frameworks and
data structures for expressing, storing, and
manipulating information about networks that change in
time. Motivated by our requirements for exchanging data
among researchers and various analysis and
visualization processes, we have created an R package
\pkg{dynamicnetwork} that builds upon previous work in
the network, \pkg{statnet} and \pkg{sna} packages and
provides a limited functional implementation. This
paper discusses design issues and considerations,
describes classes and forms of dynamic data, and works
through several examples to demonstrate the utility of
the package. The functionality of the \pkg{rSoNIA}
package that uses \pkg{dynamicnetwork} to exchange data
with the Social Network Image Animator (SoNIA) software
to create animated movies of changing networks from
within R is also demonstrated.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-01; Accepted 2007-12-25",
xxtitle = "Prototype Packages for Managing and Animating
Longitudinal Network Data: dynamicnetwork and
{rSoNIA}",
}
@Article{Admiraal:2008:NPS,
author = "Ryan Admiraal and Mark S. Handcock",
title = "\pkg{networksis}: a Package to Simulate Bipartite
Graphs with Fixed Marginals Through Sequential
Importance Sampling",
journal = j-J-STAT-SOFT,
volume = "24",
number = "8",
pages = "1--21",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v024.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v24/i08",
abstract = "The ability to simulate graphs with given properties
is important for the analysis of social networks.
Sequential importance sampling has been shown to be
particularly effective in estimating the number of
graphs adhering to fixed marginals and in estimating
the null distribution of graph statistics. This paper
describes the \pkg{networksis} package for R and how
its \pkg{simulate} and \pkg{simulate\_sis} functions
can be used to address both of these tasks as well as
generate initial graphs for Markov chain Monte Carlo
simulations.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-01-30; Accepted 2008-03-25",
xxtitle = "networksis: A Package to Simulate Bipartite Graphs
with Fixed Marginals Through Sequential Importance
Sampling",
}
@Article{Goodreau:2008:ST,
author = "Steven M. Goodreau and Mark S. Handcock and David R.
Hunter and Carter T. Butts and Martina Morris",
title = "A \pkg{statnet} Tutorial",
journal = j-J-STAT-SOFT,
volume = "24",
number = "9",
pages = "1--26",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v024.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v24/i09",
abstract = "The \pkg{statnet} suite of R packages contains a wide
range of functionality for the statistical analysis of
social networks, including the implementation of
exponential-family random graph (ERG) models. In this
paper we illustrate some of the functionality of
\pkg{statnet} through a tutorial analysis of a
friendship network of 1,461 adolescents.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-01; Accepted 2007-12-25",
xxtitle = "A statnet Tutorial",
}
@Article{Mair:2008:BRB,
author = "Patrick Mair",
title = "Book Review: {{\booktitle{Data Mining the Web:
Uncovering Patterns in Web Content, Structure, and
Usage}}}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "BR-1",
pages = "1--3",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v25/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-04-30; Accepted 2008-04-30",
}
@Article{Grothendieck:2008:BRB,
author = "Gabor Grothendieck",
title = "Book Review: {{\booktitle{\pkg{lattice}: Multivariate
Data Visualization with R}}, Deepayan Sarkar,
Springer-Verlag, New York, NY, 2008. ISBN
978-0-387-75968-5. 268 pp. USD 54.95 (P).
\url{http://dsarkar.fhcrc.org/lattice/}}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "BR-2",
pages = "1--3",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-08; Accepted 2008-05-08",
}
@Article{deLeeuw:2008:BRB,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Matrix Algebra, A Matrix
Handbook for Statisticians}}}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "BR-3",
pages = "1--3",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v25/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-27; Accepted 2008-05-27",
}
@Article{Peng:2008:CSM,
author = "Roger Peng",
title = "Code Snippet: a Method for Visualizing Multivariate
Time Series Data",
journal = j-J-STAT-SOFT,
volume = "25",
number = "CS-1",
pages = "1--17",
month = mar,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v25/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-01-15; Accepted 2008-02-25",
}
@Article{Rosenblad:2008:SRG,
author = "Andreas Rosenblad",
title = "Software Review: {{\em gret1 1.7.3}}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "SR-1",
pages = "1--14",
month = mar,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.s01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v25/s01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-03-26; Accepted 2008-03-31",
}
@Article{Le:2008:FRP,
author = "S{\'e}bastien L{\^e} and Julie Josse and
Fran{\c{c}}ois Husson",
title = "\pkg{FactoMineR}: An {R} Package for Multivariate
Analysis",
journal = j-J-STAT-SOFT,
volume = "25",
number = "1",
pages = "1--18",
month = mar,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i01",
abstract = "In this article, we present \pkg{FactoMineR} an R
package dedicated to multivariate data analysis. The
main features of this package is the possibility to
take into account different types of variables
(quantitative or categorical), different types of
structure on the data (a partition on the variables, a
hierarchy on the variables, a partition on the
individuals) and finally supplementary information
(supplementary individuals and variables). Moreover,
the dimensions issued from the different exploratory
data analyses can be automatically described by
quantitative and/or categorical variables. Numerous
graphics are also available with various options.
Finally, a graphical user interface is implemented
within the \pkg{Rcmdr} environment in order to propose
an user friendly package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-05; Accepted 2008-01-09",
xxtitle = "{FactoMineR}: An R Package for Multivariate Analysis",
}
@Article{Knoblauch:2008:MML,
author = "Kenneth Knoblauch and Laurence T. Maloney",
title = "{MLDS}: Maximum Likelihood Difference Scaling in {R}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "2",
pages = "1--26",
month = mar,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i02",
abstract = "The \pkg{MLDS} package in the R programming language
can be used to estimate perceptual scales based on the
results of psychophysical experiments using the method
of difference scaling. In a difference scaling
experiment, observers compare two supra-threshold
differences (a,b) and (c,d) on each trial. The approach
is based on a stochastic model of how the observer
decides which perceptual difference (or interval) (a,b)
or (c,d) is greater, and the parameters of the model
are estimated using a maximum likelihood criterion. We
also propose a method to test the model by evaluating
the self-consistency of the estimated scale. The
package includes an example in which an observer judges
the differences in correlation between scatterplots.
The example may be readily adapted to estimate
perceptual scales for arbitrary physical continua.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-17; Accepted 2008-01-09",
xxtitle = "{MLDS}: Maximum Likelihood Difference Scaling in R",
}
@Article{Hahsler:2008:GTO,
author = "Michael Hahsler and Kurt Hornik and Christian Buchta",
title = "Getting Things in Order: An Introduction to the {R}
Package \pkg{seriation}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "3",
pages = "1--34",
month = mar,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i03",
abstract = "Seriation, i.e., finding a suitable linear order for a
set of objects given data and a loss or merit function,
is a basic problem in data analysis. Caused by the
problem's combinatorial nature, it is hard to solve for
all but very small sets. Nevertheless, both exact
solution methods and heuristics are available. In this
paper we present the package \pkg{seriation} which
provides an infrastructure for seriation with R. The
infrastructure comprises data structures to represent
linear orders as permutation vectors, a wide array of
seriation methods using a consistent interface, a
method to calculate the value of various loss and merit
functions, and several visualization techniques which
build on \pkg{seriation}. To illustrate how easily the
package can be applied for a variety of applications, a
comprehensive collection of examples is presented.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-11; Accepted 2008-02-05",
xxtitle = "Getting Things in Order: An Introduction to the R
Package seriation",
}
@Article{Brock:2008:CRP,
author = "Guy Brock and Vasyl Pihur and Susmita Datta and
Somnath Datta",
title = "\pkg{clValid}: An {R} Package for Cluster Validation",
journal = j-J-STAT-SOFT,
volume = "25",
number = "4",
pages = "1--22",
month = mar,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i04",
abstract = "The R package \pkg{clValid} contains functions for
validating the results of a clustering analysis. There
are three main types of cluster validation measures
available, ``internal'', ``stability'', and
``biological''. The user can choose from nine
clustering algorithms in existing R packages, including
hierarchical, K-means, self-organizing maps (SOM), and
model-based clustering. In addition, we provide a
function to perform the self-organizing tree algorithm
(SOTA) method of clustering. Any combination of
validation measures and clustering methods can be
requested in a single function call. This allows the
user to simultaneously evaluate several clustering
algorithms while varying the number of clusters, to
help determine the most appropriate method and number
of clusters for the dataset of interest. Additionally,
the package can automatically make use of the
biological information contained in the Gene Ontology
(GO) database to calculate the biological validation
measures, via the annotation packages available in
Bioconductor. The function returns an object of S4
class ``\pkg{clValid}'', which has summary, plot,
print, and additional methods which allow the user to
display the optimal validation scores and extract
clustering results.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-03; Accepted 2008-01-22",
xxtitle = "{clValid}: An R Package for Cluster Validation",
}
@Article{Feinerer:2008:TMI,
author = "Ingo Feinerer and Kurt Hornik and David Meyer",
title = "Text Mining Infrastructure in {R}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "5",
pages = "1--54",
month = mar,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i05",
abstract = "During the last decade text mining has become a widely
used discipline utilizing statistical and machine
learning methods. We present the \pkg{tm} package which
provides a framework for text mining applications
within R. We give a survey on text mining facilities in
R and explain how typical application tasks can be
carried out using our framework. We present techniques
for count-based analysis methods, text clustering, text
classification and string kernels.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-05; Accepted 2008-02-10",
xxtitle = "Text Mining Infrastructure in R",
}
@Article{Johnson:2008:SIS,
author = "Kjell Johnson and Abhyuday Mandal and Tan Ding",
title = "Software for Implementing the Sequential Elimination
of Level Combinations Algorithm",
journal = j-J-STAT-SOFT,
volume = "25",
number = "6",
pages = "1--13",
month = mar,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v25/i06",
abstract = "Genetic algorithms (GAs) are a popular technology to
search for an optimum in a large search space. Using
new concepts of forbidden array and weighted mutation,
Mandal, Wu, and Johnson (2006) used elements of GAs to
introduce a new global optimization technique called
sequential elimination of level combinations (SELC),
that efficiently finds optima. A SAS macro, and MATLAB
and R functions are developed to implement the SELC
algorithm.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-08-23; Accepted 2008-02-24",
xxtitle = "Software for Implementing the Sequential Elimination
of Level Combinations Algorithm",
}
@Article{Dutang:2008:ARP,
author = "Christophe Dutang and Vincent Goulet and Mathieu
Pigeon",
title = "\pkg{actuar}: An {R} Package for Actuarial Science",
journal = j-J-STAT-SOFT,
volume = "25",
number = "7",
pages = "1--37",
month = mar,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i07",
abstract = "\pkg{actuar} is a package providing additional
Actuarial Science functionality to the R statistical
system. The project was launched in 2005 and the
package is available on the Comprehensive R Archive
Network since February 2006. The current version of the
package contains functions for use in the fields of
loss distributions modeling, risk theory (including
ruin theory), simulation of compound hierarchical
models and credibility theory. This paper presents in
detail but with few technical terms the most recent
version of the package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-11-16; Accepted 2008-02-14",
xxtitle = "actuar: An R Package for Actuarial Science",
}
@Article{Sheng:2008:MPMa,
author = "Yanyan Sheng",
title = "{Markov} Chain {Monte Carlo} Estimation of Normal
{Ogive} {IRT} Models in {MATLAB}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "8",
pages = "1--15",
month = apr,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v25/i08",
abstract = "Modeling the interaction between persons and items at
the item level for binary response data, item response
theory (IRT) models have been found useful in a wide
variety of applications in various fields. This paper
provides the requisite information and description of
software that implements the Gibbs sampling procedures
for the one-, two- and three-parameter normal ogive
models. The software developed is written in the MATLAB
package IRTuno. The package is flexible enough to allow
a user the choice to simulate binary response data, set
the number of total or burn-in iterations, specify
starting values or prior distributions for model
parameters, check convergence of the Markov chain, and
obtain Bayesian fit statistics. Illustrative examples
are provided to demonstrate and validate the use of the
software package. The m-file v25i08.m is also provided
as a guide for the user of the MCMC algorithms with the
three dichotomous IRT models.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-05; Accepted 2008-03-27",
xxtitle = "Markov Chain Monte Carlo Estimation of Normal Ogive
{IRT} Models in {MATLAB}",
}
@Article{Lawrence:2008:EME,
author = "Michael Lawrence and Dianne Cook and Eun-Kyung Lee and
Heather Babka and Eve Syrkin Wurtele",
title = "\pkg{explorase}: Multivariate Exploratory Analysis and
Visualization for Systems Biology",
journal = j-J-STAT-SOFT,
volume = "25",
number = "9",
pages = "1--23",
month = apr,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v25/i09",
abstract = "The datasets being produced by high-throughput
biological experiments, such as microarrays, have
forced biologists to turn to sophisticated statistical
analysis and visualization tools in order to understand
their data. We address the particular need for an
open-source exploratory data analysis tool that applies
numerical methods in coordination with interactive
graphics to the analysis of experimental data. The
software package, known as \pkg{explorase}, provides a
graphical user interface (GUI) on top of the R platform
for statistical computing and the GGobi software for
multivariate interactive graphics. The GUI is designed
for use by biologists, many of whom are unfamiliar with
the R language. It displays metadata about experimental
design and biological entities in tables that are
sortable and filterable. There are menu shortcuts to
the analysis methods implemented in R, including
graphical interfaces to linear modeling tools. The GUI
is linked to data plots in GGobi through a brush tool
that simultaneously colors rows in the entity
information table and points in the GGobi plots.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-31; Accepted 2008-03-29",
xxtitle = "explorase: Multivariate Exploratory Analysis and
Visualization for Systems Biology",
}
@Article{Smith:2008:UGM,
author = "Brian J. Smith and Jun Yan and Mary Kathryn Cowles",
title = "Unified Geostatistical Modeling for Data Fusion and
Spatial Heteroskedasticity with {R} Package
\pkg{ramps}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "10",
pages = "1--21",
month = apr,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i10",
abstract = "This article illustrates usage of the \pkg{ramps} R
package, which implements the reparameterized and
marginalized posterior sampling (RAMPS) algorithm for
complex Bayesian geostatistical models. The RAMPS
methodology allows joint modeling of areal and
point-source data arising from the same underlying
spatial process. A reparametrization of variance
parameters facilitates slice sampling based on
simplexes, which can be useful in general when multiple
variances are present. Prediction at arbitrary points
can be made, which is critical in applications where
maps are needed. Our implementation takes advantage of
sparse matrix operations in the Matrix package and can
provide substantial savings in computing time for large
datasets. A user-friendly interface, similar to the
\pkg{nlme} mixed effects models package, enables users
to analyze datasets with little programming effort.
Support is provided for numerous spatial and
spatiotemporal correlation structures, user-defined
correlation structures, and non-spatial random effects.
The package features are illustrated via a synthetic
dataset of spatially correlated observation distributed
across the state of Iowa, USA.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-12-17; Accepted 2008-03-26",
xxtitle = "Unified Geostatistical Modeling for Data Fusion and
Spatial Heteroskedasticity with R Package ramps",
}
@Article{Iacus:2008:IMF,
author = "Stefano M. Iacus and Giuseppe Porro",
title = "Invariant and Metric Free Proximities for Data
Matching: An {R} Package",
journal = j-J-STAT-SOFT,
volume = "25",
number = "11",
pages = "1--22",
month = apr,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i11",
abstract = "Data matching is a typical statistical problem in non
experimental and/or observational studies or, more
generally, in cross-sectional studies in which one or
more data sets are to be compared. Several methods are
available in the literature, most of which based on a
particular metric or on statistical models, either
parametric or nonparametric. In this paper we present
two methods to calculate a proximity which have the
property of being invariant under monotonic
transformations. These methods require at most the
notion of ordering. An open-source software in the form
of a R package is also presented.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-03-19; Accepted 2008-03-31",
remark = "Describes package \pkg{rrp}.",
xxtitle = "Invariant and Metric Free Proximities for Data
Matching: An R Package",
}
@Article{Pineda-Krch:2008:GIG,
author = "Mario Pineda-Krch",
title = "\pkg{GillespieSSA}: Implementing the {Gillespie}
Stochastic Simulation Algorithm in {R}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "12",
pages = "1--18",
month = apr,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i12",
abstract = "The deterministic dynamics of populations in
continuous time are traditionally described using
coupled, first-order ordinary differential equations.
While this approach is accurate for large systems, it
is often inadequate for small systems where key species
may be present in small numbers or where key reactions
occur at a low rate. The Gillespie stochastic
simulation algorithm (SSA) is a procedure for
generating time-evolution trajectories of finite
populations in continuous time and has become the
standard algorithm for these types of stochastic
models. This article presents a simple-to-use and
flexible framework for implementing the SSA using the
high-level statistical computing language R and the
package \pkg{GillespieSSA}. Using three ecological
models as examples (logistic growth,
Rosenzweig-MacArthur predator-prey model, and
Kermack-McKendrick SIRS metapopulation model), this
paper shows how a deterministic model can be formulated
as a finite-population stochastic model within the
framework of SSA theory and how it can be implemented
in R. Simulations of the stochastic models are
performed using four different SSA Monte Carlo methods:
one exact method (Gillespie's direct method); and three
approximate methods (explicit, binomial, and optimized
tau-leap methods). Comparison of simulation results
confirms that while the time-evolution trajectories
obtained from the different SSA methods are
indistinguishable, the approximate methods are up to
four orders of magnitude faster than the exact
methods.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-10-19; Accepted 2008-02-01",
xxtitle = "{GillespieSSA}: Implementing the Stochastic Simulation
Algorithm in R",
}
@Article{Lawson:2008:SMA,
author = "John Lawson",
title = "{SAS} Macros for Analysis of Unreplicated $ 2^k $ and
$ 2^{k - p} $ Designs with a Possible Outlier",
journal = j-J-STAT-SOFT,
volume = "25",
number = "13",
pages = "1--17",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v25/i13",
abstract = "Many techniques have been proposed for judging the
significance of effects in unreplicated $ 2^k $ and $
2^{k - p} $ designs. However, relatively few methods
have been proposed for analyzing unreplicated designs
with possible outliers. Outliers can be a major
impediment to valid interpretation of data from
unreplicated designs. This paper presents SAS macros
which automate a manual method for detecting an outlier
and performing an analysis of data from an unreplicated
$ 2^k $ or $ 2^{k - p} $ design when an outlier is
present. This method was originally suggested by
Cuthbert Daniel and is based on the normal or half
normal plot of effects. This automated version was
shown in simulation studies to perform better than
other procedures proposed to do the same thing.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-17; Accepted 2008-03-22",
xxtitle = "{SAS} Macros for Analysis of Unreplicated 2 k and 2 k
- p Designs with a Possible Outlier",
}
@Article{Ratcliffe:2008:GMT,
author = "Sarah J. Ratcliffe and Justine Shults",
title = "{GEEQBOX}: a {MATLAB} Toolbox for Generalized
Estimating Equations and Quasi-Least Squares",
journal = j-J-STAT-SOFT,
volume = "25",
number = "14",
pages = "1--14",
month = may,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v025.i14",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v25/i14",
abstract = "The GEEQBOX toolbox analyzes correlated data via the
method of generalized estimating equations (GEE) and
quasi-least squares (QLS), an approach based on GEE
that overcomes some limitations of GEE that have been
noted in the literature. GEEQBOX is currently able to
handle correlated data that follows a normal, Bernoulli
or Poisson distribution, and that is assumed to have an
AR(1), Markov, tri-diagonal, equicorrelated,
unstructured or working independence correlation
structure. This toolbox is for use with MATLAB.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-13; Accepted 2008-03-28",
xxtitle = "{GEEQBOX}: A {MATLAB} Toolbox for Generalized
Estimating Equations and Quasi-Least Squares",
}
@Article{Wickham:2008:BRBa,
author = "Hadley Wickham",
title = "Book Review: {{\booktitle{Data Manipulation with
R}}}",
journal = j-J-STAT-SOFT,
volume = "26",
number = "BR-1",
pages = "1--2",
month = jun,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v026.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-06-16; Accepted 2008-06-16",
}
@Article{Wallstrom:2008:IBA,
author = "Garrick Wallstrom and Jeffrey Liebner and Robert E.
Kass",
title = "An Implementation of {Bayesian} Adaptive Regression
Splines ({BARS}) in {C} with {S} and {R} Wrappers",
journal = j-J-STAT-SOFT,
volume = "26",
number = "1",
pages = "1--21",
month = jun,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v026.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/i01",
abstract = ">BARS (DiMatteo, Genovese, and Kass 2001) uses the
powerful reversible-jump MCMC engine to perform
spline-based generalized nonparametric regression. It
has been shown to work well in terms of having small
mean-squared error in many examples (smaller than known
competitors), as well as producing visually-appealing
fits that are smooth (filtering out high-frequency
noise) while adapting to sudden changes (retaining
high-frequency signal). However, BARS is
computationally intensive. The original implementation
in \pkg{S} was too slow to be practical in certain
situations, and was found to handle some data sets
incorrectly. We have implemented BARS in \pkg{C} for
the normal and Poisson cases, the latter being
important in neurophysiological and other point-process
applications. The \pkg{C} implementation includes all
needed subroutines for fitting Poisson regression,
manipulating B-splines (using code created by Bates and
Venables), and finding starting values for Poisson
regression (using code for density estimation created
by Kooperberg). The code utilizes only freely-available
external libraries ({\bf LAPACK} and {\bf BLAS}) and is
otherwise self-contained. We have also provided
wrappers so that BARS can be used easily within \pkg{S}
or \pkg{R}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2004-06-25; Accepted 2007-02-20",
xxtitle = "An Implementation of Bayesian Adaptive Regression
Splines ({BARS}) in C with S and R Wrappers",
}
@Article{Brown:2008:RAM,
author = "J. Randall Brown and Milton E. Harvey",
title = "Rational Arithmetic {Mathematica} Functions to
Evaluate the Two-Sided One Sample {K-S} Cumulative
Sampling Distribution",
journal = j-J-STAT-SOFT,
volume = "26",
number = "2",
pages = "1--40",
month = jun,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v026.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/mathematica.bib",
URL = "http://www.jstatsoft.org/v26/i02",
abstract = "One of the most widely used goodness-of-fit tests is
the two-sided one sample Kolmogorov--Smirnov (K-S) test
which has been implemented by many computer statistical
software packages. To calculate a two-sided p value
(evaluate the cumulative sampling distribution), these
packages use various methods including recursion
formulae, limiting distributions, and approximations of
unknown accuracy developed over thirty years ago. Based
on an extensive literature search for the two-sided one
sample K-S test, this paper identifies an exact formula
for sample sizes up to 31, six recursion formulae, and
one matrix formula that can be used to calculate a p
value. To ensure accurate calculation by avoiding
catastrophic cancellation and eliminating rounding
error, each of these formulae is implemented in
rational arithmetic. For the six recursion formulae and
the matrix formula, computational experience for sample
sizes up to 500 shows that computational times are
increasing functions of both the sample size and the
number of digits in the numerator and denominator
integers of the rational number test statistic. The
computational times of the seven formulae vary
immensely but the Durbin recursion formula is almost
always the fastest. Linear search is used to calculate
the inverse of the cumulative sampling distribution
(find the confidence interval half-width) and tables of
calculated half-widths are presented for sample sizes
up to 500. Using calculated half-widths as input,
computational times for the fastest formula, the Durbin
recursion formula, are given for sample sizes up to two
thousand.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-23; Accepted 2007-06-25",
xxtitle = "Rational Arithmetic Mathematica Functions to Evaluate
the Two-Sided One Sample K-S Cumulative Sampling
Distribution",
}
@Article{Brown:2008:APM,
author = "J. Randall Brown and Milton E. Harvey",
title = "Arbitrary Precision {Mathematica} Functions to
Evaluate the One-Sided One Sample {K-S} Cumulative
Sampling Distribution",
journal = j-J-STAT-SOFT,
volume = "26",
number = "3",
pages = "1--55",
month = jun,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v026.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/mathematica.bib",
URL = "http://www.jstatsoft.org/v26/i03",
abstract = "Efficient rational arithmetic methods that can exactly
evaluate the cumulative sampling distribution of the
one-sided one sample Kolmogorov--Smirnov (K-S) test
have been developed by Brown and Harvey (2007) for
sample sizes n up to fifty thousand. This paper
implements in arbitrary precision the same 13 formulae
to evaluate the one-sided one sample K-S cumulative
sampling distribution. Computational experience
identifies the fastest implementation which is then
used to calculate confidence interval bandwidths and p
values for sample sizes up to ten million.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-03; Accepted 2008-04-03",
xxtitle = "Arbitrary Precision Mathematica Functions to Evaluate
the One-Sided One Sample K-S Cumulative Sampling
Distribution",
}
@Article{Leiva:2008:RPG,
author = "V{\'\i}ctor Leiva and Hugo Hern{\'a}ndez and Antonio
Sanhueza",
title = "An {R} Package for a General Class of Inverse
{Gaussian} Distributions",
journal = j-J-STAT-SOFT,
volume = "26",
number = "4",
pages = "1--21",
month = jun,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v026.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/i04",
abstract = "The inverse Gaussian distribution is a positively
skewed probability model that has received great
attention in the last 20 years. Recently, a family that
generalizes this model called inverse Gaussian type
distributions has been developed. The new R package
named \pkg{ig} has been designed to analyze data from
inverse Gaussian type distributions. This package
contains basic probabilistic functions, lifetime
indicators and a random number generator from this
model. Also, parameter estimates and diagnostics
analysis can be obtained using likelihood methods by
means of this package. In addition, goodness-of-fit
methods are implemented in order to detect the
suitability of the model to the data. The capabilities
and features of the \pkg{ig} package are illustrated
using simulated and real data sets. Furthermore, some
new results related to the inverse Gaussian type
distribution are also obtained. Moreover, a simulation
study is conducted for evaluating the estimation method
implemented in the \pkg{ig} package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-13; Accepted 2008-03-31",
remark = "Describes package \pkg{ig}.",
xxtitle = "An R Package for a General Class of Inverse Gaussian
Distributions",
}
@Article{Wheeler:2008:MAS,
author = "Matthew W. Wheeler and A. John Bailer",
title = "Model Averaging Software for Dichotomous Dose Response
Risk Estimation",
journal = j-J-STAT-SOFT,
volume = "26",
number = "5",
pages = "1--15",
month = jun,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v026.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v26/i05",
abstract = "Model averaging has been shown to be a useful method
for incorporating model uncertainty in quantitative
risk estimation. In certain circumstances this
technique is computationally complex, requiring
sophisticated software to carry out the computation. We
introduce software that implements model averaging for
risk assessment based upon dichotomous dose-response
data. This software, which we call Model Averaging for
Dichotomous Response Benchmark Dose ({\bf MADr-BMD}),
fits the quantal response models, which are also used
in the US Environmental Protection Agency benchmark
dose software suite, and generates a model-averaged
dose response model to generate benchmark dose and
benchmark dose lower bound estimates. The software
fulfills a need for risk assessors, allowing them to go
beyond one single model in their risk assessments based
on quantal data by focusing on a set of models that
describes the experimental data.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-20; Accepted 2008-02-04",
xxtitle = "Model Averaging Software for Dichotomous Dose Response
Risk Estimation",
}
@Article{Kiermeier:2008:VAA,
author = "Andreas Kiermeier",
title = "Visualizing and Assessing Acceptance Sampling Plans:
The {R} Package \pkg{AcceptanceSampling}",
journal = j-J-STAT-SOFT,
volume = "26",
number = "6",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v026.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-29; Accepted 2008-06-24",
xxtitle = "Visualizing and Assessing Acceptance Sampling Plans:
The R Package {AcceptanceSampling}",
}
@Article{Peng:2008:CDS,
author = "Roger D. Peng",
title = "Caching and Distributing Statistical Analyses in {R}",
journal = j-J-STAT-SOFT,
volume = "26",
number = "7",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v026.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-10-26; Accepted 2008-07-10",
xxtitle = "Caching and Distributing Statistical Analyses in R",
}
@Article{Zeileis:2008:ERP,
author = "Achim Zeileis and Roger Koenker",
title = "Econometrics in {R}: Past, Present, and Future",
journal = j-J-STAT-SOFT,
volume = "27",
number = "1",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v027.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v27/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-22; Accepted 2008-07-22",
xxtitle = "Econometrics in R: Past, Present, and Future",
}
@Article{Croissant:2008:PDE,
author = "Yves Croissant and Giovanni Millo",
title = "Panel Data Econometrics in {R}: The \pkg{plm}
Package",
journal = j-J-STAT-SOFT,
volume = "27",
number = "2",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v027.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v27/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-06; Accepted 2008-03-20",
xxtitle = "Panel Data Econometrics in R: The plm Package",
}
@Article{Hyndman:2008:ATS,
author = "Rob J. Hyndman and Yeasmin Khandakar",
title = "Automatic Time Series Forecasting: The \pkg{forecast}
Package for {R}",
journal = j-J-STAT-SOFT,
volume = "27",
number = "3",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v027.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v27/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-29; Accepted 2008-03-22",
xxtitle = "Automatic Time Series Forecasting: The forecast
Package for R",
}
@Article{Pfaff:2008:VSS,
author = "Bernhard Pfaff",
title = "{VAR}, {SVAR} and {SVEC} Models: Implementation Within
{R} Package \pkg{vars}",
journal = j-J-STAT-SOFT,
volume = "27",
number = "4",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v027.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v27/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-07; Accepted 2008-02-19",
xxtitle = "{VAR}, {SVAR} and {SVEC} Models: Implementation Within
R Package vars",
}
@Article{Hayfield:2008:NEN,
author = "Tristen Hayfield and Jeffrey S. Racine",
title = "Nonparametric Econometrics: The \pkg{np} Package",
journal = j-J-STAT-SOFT,
volume = "27",
number = "5",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v027.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v27/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-30; Accepted 2008-07-22",
xxtitle = "Nonparametric Econometrics: The np Package",
}
@Article{Koenker:2008:CQR,
author = "Roger Koenker",
title = "Censored Quantile Regression Redux",
journal = j-J-STAT-SOFT,
volume = "27",
number = "6",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v027.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v27/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-02-20; Accepted 2008-05-26",
xxtitle = "Censored Quantile Regression Redux",
}
@Article{Toomet:2008:SSM,
author = "Ott Toomet and Arne Henningsen",
title = "Sample Selection Models in {R}: Package
\pkg{sampleSelection}",
journal = j-J-STAT-SOFT,
volume = "27",
number = "7",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v027.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v27/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-01; Accepted 2008-06-06",
xxtitle = "Sample Selection Models in R: Package
{sampleSelection}",
}
@Article{Zeileis:2008:RMC,
author = "Achim Zeileis and Christian Kleiber and Simon
Jackman",
title = "Regression Models for Count Data in {R}",
journal = j-J-STAT-SOFT,
volume = "27",
number = "8",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v027.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v27/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-04; Accepted 2008-06-06",
xxtitle = "Regression Models for Count Data in R",
}
@Article{Hartmann:2008:BRB,
author = "Wolfgang M. Hartmann",
title = "Book Review: {{\booktitle{SAS for Data Analysis:
Intermediate Statistical Methods}}}",
journal = j-J-STAT-SOFT,
volume = "28",
number = "BR-1",
pages = "??--??",
month = oct,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v28/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-10-26; Accepted 2008-10-26",
}
@Article{Schmidberger:2008:BRB,
author = "Markus Schmidberger",
title = "Book Review: {{\booktitle{Introduction to Machine
Learning and Bioinformatics}}}",
journal = j-J-STAT-SOFT,
volume = "28",
number = "BR-2",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v28/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-04; Accepted 2008-11-04",
}
@Article{Wickham:2008:BRBb,
author = "Hadley Wickham",
title = "Book Review: {{\booktitle{A First Course in
Statistical Programming with R}}}",
journal = j-J-STAT-SOFT,
volume = "28",
number = "BR-3",
pages = "??--??",
month = dec,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-09; Accepted 2008-12-09",
}
@Article{Kampstra:2008:CSB,
author = "Peter Kampstra",
title = "Code Snippet: \pkg{Beanplot}: a Boxplot Alternative
for Visual Comparison of Distributions",
journal = j-J-STAT-SOFT,
volume = "28",
number = "CS-1",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v28/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-09-19; Accepted 2008-10-28",
}
@Article{Feng:2008:CDI,
author = "Dai Feng and Luke Tierney",
title = "Computing and Displaying Isosurfaces in {R}",
journal = j-J-STAT-SOFT,
volume = "28",
number = "1",
pages = "??--??",
month = sep,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-28; Accepted 2008-09-04",
xxtitle = "Computing and Displaying Isosurfaces in R",
}
@Article{McLeod:2008:ISA,
author = "A. Ian McLeod and Ying Zhang",
title = "Improved Subset Autoregression: With {R} Package",
journal = j-J-STAT-SOFT,
volume = "28",
number = "2",
pages = "??--??",
month = oct,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-08-26; Accepted 2008-07-03",
xxtitle = "Improved Subset Autoregression: With R Package",
}
@Article{Hui:2008:LRP,
author = "Wallace Hui and Yulia R. Gel and Joseph L. Gastwirth",
title = "\pkg{lawstat}: An {R} Package for Law, Public Policy
and Biostatistics",
journal = j-J-STAT-SOFT,
volume = "28",
number = "3",
pages = "??--??",
month = oct,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-11-12; Accepted 2008-01-11",
xxtitle = "lawstat: An R Package for Law, Public Policy and
Biostatistics",
}
@Article{Grun:2008:FVF,
author = "Bettina Gr{\"u}n and Friedrich Leisch",
title = "{FlexMix} Version 2: Finite Mixtures with Concomitant
Variables and Varying and Constant Parameters",
journal = j-J-STAT-SOFT,
volume = "28",
number = "4",
pages = "??--??",
month = oct,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v28/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-11; Accepted 2008-09-19",
xxtitle = "{FlexMix} Version 2: Finite Mixtures with Concomitant
Variables and Varying and Constant Parameters",
}
@Article{Kuhn:2008:BPM,
author = "Max Kuhn",
title = "Building Predictive Models in {R} Using the
\pkg{caret} Package",
journal = j-J-STAT-SOFT,
volume = "28",
number = "5",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-04-22; Accepted 2008-08-18",
xxtitle = "Building Predictive Models in R Using the caret
Package",
}
@Article{Nordhausen:2008:TEM,
author = "Klaus Nordhausen and Hannu Oja and David E. Tyler",
title = "Tools for Exploring Multivariate Data: The Package
\pkg{ICS}",
journal = j-J-STAT-SOFT,
volume = "28",
number = "6",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v28/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-02-19; Accepted 2008-09-03",
xxtitle = "Tools for Exploring Multivariate Data: The Package
{ICS}",
}
@Article{Kairalla:2008:GSI,
author = "John A. Kairalla and Christopher S. Coffey and Keith
E. Muller",
title = "{GLUMIP 2.0}: {SAS\slash IML} Software for Planning
Internal Pilots",
journal = j-J-STAT-SOFT,
volume = "28",
number = "7",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v28/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-31; Accepted 2008-09-16",
xxtitle = "{GLUMIP} 2.0: {SAS}/{IML} Software for Planning
Internal Pilots",
}
@Article{Hothorn:2008:ICP,
author = "Torsten Hothorn and Kurt Hornik and Mark A. van de
Wiel and Achim Zeileis",
title = "Implementing a Class of Permutation Tests: The
\pkg{coin} Package",
journal = j-J-STAT-SOFT,
volume = "28",
number = "8",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v28/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-07-05; Accepted 2008-10-21",
xxtitle = "Implementing a Class of Permutation Tests: The coin
Package",
}
@Article{Cao:2008:ORP,
author = "Kim-Anh L{\^e} Cao and Patrick Chabrier",
title = "\pkg{ofw}: An {R} Package to Select Continuous
Variables for Multiclass Classification with a
Stochastic Wrapper Method",
journal = j-J-STAT-SOFT,
volume = "28",
number = "9",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-02-13; Accepted 2008-07-25",
xxtitle = "ofw: An R Package to Select Continuous Variables for
Multiclass Classification with a Stochastic Wrapper
Method",
}
@Article{Sheng:2008:MPMb,
author = "Yanyan Sheng",
title = "A {MATLAB} Package for {Markov} Chain {Monte Carlo}
with a Multi-Unidimensional {IRT} Model",
journal = j-J-STAT-SOFT,
volume = "28",
number = "10",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v28/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-04-22; Accepted 2008-11-08",
xxtitle = "A {MATLAB} Package for Markov Chain Monte Carlo with a
Multi-Unidimensional {IRT} Model",
}
@Article{West:2008:ETT,
author = "Luke J. West and Robin K. S. Hankin",
title = "Exact Tests for Two-Way Contingency Tables with
Structural Zeros",
journal = j-J-STAT-SOFT,
volume = "28",
number = "11",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v028.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v28/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-01-23; Accepted 2008-11-11",
xxtitle = "Exact Tests for Two-Way Contingency Tables with
Structural Zeros",
}
@Article{Unwin:2009:BRB,
author = "Antony Unwin",
title = "Book Review: {{\booktitle{Bioconductor Case
Studies}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-1",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-02; Accepted 2009-01-02",
}
@Article{Valero-Mora:2009:BRBa,
author = "Pedro M. Valero-Mora",
title = "Book Review: {{\booktitle{Introductory Statistics with
R}} (Second Edition)}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-10",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-15; Accepted 2009-01-15",
}
@Article{Maindonald:2009:BRBa,
author = "John Maindonald",
title = "Book Review: {{\booktitle{Modern Multivariate
Statistical Techniques: Regression, Classification and
Manifold Learning}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-11",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/b11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-09; Accepted 2009-02-09",
}
@Article{Maindonald:2009:BRBb,
author = "John Maindonald",
title = "Book Review: {{\booktitle{Statistical Learning from a
Regression Perspective}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-12",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/b12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-09; Accepted 2009-02-09",
}
@Article{Mair:2009:BRB,
author = "Patrick Mair",
title = "Book Review: {{\booktitle{Analysis of Multivariate
Social Science Data}} (2nd Edition)}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-13",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/b13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-18; Accepted 2009-02-18",
}
@Article{Eddelbuettel:2009:BRBa,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{Applied Econometrics with
R}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-14",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b14",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-25; Accepted 2009-02-25",
}
@Article{Sanchez:2009:BRB,
author = "Juana Sanchez",
title = "Book Review: {{\booktitle{Probability with R --- an
Introduction with Computer Science Applications}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-2",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-02; Accepted 2009-01-02",
}
@Article{Achard:2009:BRB,
author = "Sophie Achard",
title = "Book Review: {{\booktitle{The Statistical Analysis of
Functional MRI Data}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-3",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-02; Accepted 2009-01-02",
}
@Article{Ellis:2009:BRB,
author = "Byron Ellis",
title = "Book Review: {{\booktitle{Software for Data
Analysis}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-4",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-02; Accepted 2009-01-02",
}
@Article{Lenth:2009:BRB,
author = "Russell V. Lenth",
title = "Book Review: {{\booktitle{Design and Analysis of
Experiments: Classical and Regression Approaches with
SAS}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-5",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-03; Accepted 2009-01-03",
}
@Article{deLeeuw:2009:BRBa,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Nonlinear Regression with
R}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-6",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-04; Accepted 2009-01-04",
}
@Article{deLeeuw:2009:BRBb,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Statistical Methods for
Environmental Epidemiology with R}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-7",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-05; Accepted 2009-01-05",
}
@Article{deLeeuw:2009:BRBc,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{R Programming for
Bioinformatics}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-8",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-10; Accepted 2009-01-10",
}
@Article{Rosario:2009:BRB,
author = "Ryan Rosario",
title = "Book Review: {{\booktitle{Practical Text Mining with
Perl}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-9",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.b09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/b09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-01-14; Accepted 2008-01-14",
}
@Article{Wang:2009:CSC,
author = "Bing-Shun Wang and Xiao-Jin Wang and Li-Kun Gong",
title = "Code Snippet: The Construction of a {Williams} Design
and Randomization in Cross-Over Clinical Trials Using
{SAS}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "CS-1",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v29/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-10-09; Accepted 2009-02-18",
}
@Article{Cho:2009:RLB,
author = "HyungJun Cho and Ami Yu and Sukwoo Kim and Jaewoo Kang
and Seung-Mo Hong",
title = "Robust Likelihood-Based Survival Modeling with
Microarray Data",
journal = j-J-STAT-SOFT,
volume = "29",
number = "1",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v29/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-10-16; Accepted 2008-09-23",
xxtitle = "Robust Likelihood-Based Survival Modeling with
Microarray Data",
}
@Article{Cule:2009:LRP,
author = "Madeleine Cule and Robert B. Gramacy and Richard
Samworth",
title = "\pkg{LogConcDEAD}: An {R} Package for Maximum
Likelihood Estimation of a Multivariate Log-Concave
Density",
journal = j-J-STAT-SOFT,
volume = "29",
number = "2",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-07; Accepted 2008-12-14",
xxtitle = "{LogConcDEAD}: An R Package for Maximum Likelihood
Estimation of a Multivariate Log-Concave Density",
}
@Article{Ardia:2009:AMS,
author = "David Ardia and Lennart F. Hoogerheide and Herman K.
van Dijk",
title = "Adaptive Mixture of {Student-$t$} Distributions as a
Flexible Candidate Distribution for Efficient
Simulation: The {R} Package \pkg{AdMit}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "3",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-06-30; Accepted 2008-12-01",
xxtitle = "Adaptive Mixture of Student- t Distributions as a
Flexible Candidate Distribution for Efficient
Simulation: The R Package {AdMit}",
}
@Article{Dahl:2009:RAR,
author = "David B. Dahl and Scott Crawford",
title = "\pkg{RinRuby}: Accessing the {R} Interpreter from Pure
{Ruby}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "4",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-03; Accepted 2008-11-26",
xxtitle = "{RinRuby}: Accessing the R Interpreter from Pure
Ruby",
}
@Article{Vinod:2009:MEB,
author = "Hrishikesh D. Vinod and Javier L{\'o}pez-de-Lacalle",
title = "Maximum Entropy Bootstrap for Time Series: The
\pkg{meboot} {R} Package",
journal = j-J-STAT-SOFT,
volume = "29",
number = "5",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-10-17; Accepted 2008-07-04",
xxtitle = "Maximum Entropy Bootstrap for Time Series: The meboot
R Package",
}
@Article{Helmreich:2009:PRP,
author = "James E. Helmreich and Robert M. Pruzek",
title = "\pkg{PSAgraphics}: An {R} Package to Support
Propensity Score Analysis",
journal = j-J-STAT-SOFT,
volume = "29",
number = "6",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-09-24; Accepted 2008-12-22",
xxtitle = "{PSAgraphics}: An R Package to Support Propensity
Score Analysis",
}
@Article{Bornkamp:2009:MRP,
author = "Bj{\"o}rn Bornkamp and Jos{\'e} Pinheiro and Frank
Bretz",
title = "\pkg{MCPMod}: An {R} Package for the Design and
Analysis of Dose-Finding Studies",
journal = j-J-STAT-SOFT,
volume = "29",
number = "7",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-15; Accepted 2009-01-22",
xxtitle = "{MCPMod}: An R Package for the Design and Analysis of
Dose-Finding Studies",
}
@Article{Solymos:2009:PED,
author = "P{\'e}ter S{\'o}lymos",
title = "Processing Ecological Data in {R} with the \pkg{mefa}
Package",
journal = j-J-STAT-SOFT,
volume = "29",
number = "8",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-10-09; Accepted 2009-01-04",
xxtitle = "Processing Ecological Data in R with the mefa
Package",
}
@Article{Siddique:2009:MSM,
author = "Juned Siddique and Ofer Harel",
title = "\pkg{MIDAS}: a {SAS} Macro for Multiple Imputation
Using Distance-Aided Selection of Donors",
journal = j-J-STAT-SOFT,
volume = "29",
number = "9",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v29/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-09-10; Accepted 2009-01-28",
xxtitle = "{MIDAS}: A {SAS} Macro for Multiple Imputation Using
Distance-Aided Selection of Donors",
}
@Article{Grun:2009:AGE,
author = "Bettina Gr{\"u}n and Achim Zeileis",
title = "Automatic Generation of Exams in {R}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "10",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v029.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-10; Accepted 2009-02-17",
xxtitle = "Automatic Generation of Exams in R",
}
@Article{Maloney:2009:BRB,
author = "Laurence T. Maloney",
title = "Book Review: {{\booktitle{Introduction to Probability
with R}}}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-1",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-27; Accepted 2009-04-27",
}
@Article{Wilson:2009:BRB,
author = "Brigid Wilson",
title = "Book Review: {{\booktitle{A Handbook of Statistical
Analyses Using SAS}} (Third Edition)}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-2",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-27; Accepted 2009-04-27",
}
@Article{Hilbe:2009:BRBa,
author = "Joseph Hilbe",
title = "Book Review: {{\booktitle{Data Analysis Using
Regression and Multilevel/Hierarchical Models}}}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-3",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-27; Accepted 2009-04-27",
}
@Article{Hilbe:2009:BRBb,
author = "Joseph Hilbe",
title = "Book Review: {{\booktitle{Survival Analysis for
Epidemiologic and Medical Research}}}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-4",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.b04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-27; Accepted 2009-04-27",
}
@Article{Eddelbuettel:2009:BRBb,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{Analysis of Integrated and
Cointegrated Time Series with R}} (2nd Edition)}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-5",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.b05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-27; Accepted 2009-04-27",
}
@Article{Sargin:2009:BRB,
author = "Anatol Sargin",
title = "Book Review: {{\booktitle{Statistics and Data with R:
An Applied Approach Through Examples}}}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-6",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.b06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-27; Accepted 2009-04-27",
}
@Article{Valero-Mora:2009:BRBb,
author = "Pedro M. Valero-Mora",
title = "Book Review: {{\booktitle{Interactive and Dynamic
Graphics for Data Analysis: With R and GGobi}}}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-7",
pages = "??--??",
month = may,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.b07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/b07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-11; Accepted 2009-05-11",
}
@Article{VandenMeersche:2009:CSF,
author = "Karel {Van den Meersche} and Karline Soetaert and Dick
{Van Oevelen}",
title = "Code Snippet: \fun{xsample()}: An {R} Function for
Sampling Linear Inverse Problems",
journal = j-J-STAT-SOFT,
volume = "30",
number = "CS-1",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-26; Accepted 2009-03-31",
}
@Article{Murrell:2009:QCS,
author = "Paul Murrell and Stephen Gardiner",
title = "Quality Control for Statistical Graphics: The
\pkg{graphicsQC} Package for {R}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "1",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-08; Accepted 2009-02-25",
xxtitle = "Quality Control for Statistical Graphics: The
{graphicsQC} Package for R",
}
@Article{Hoffmann:2009:FMA,
author = "Thomas J. Hoffmann and Nan M. Laird",
title = "\pkg{fgui}: a Method for Automatically Creating
Graphical User Interfaces for Command-Line {R}
Packages",
journal = j-J-STAT-SOFT,
volume = "30",
number = "2",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-10-01; Accepted 2009-03-02",
xxtitle = "fgui: A Method for Automatically Creating Graphical
User Interfaces for Command-Line R Packages",
}
@Article{Chu:2009:SAI,
author = "Annie Chu and Jenny Cui and Ivo D. Dinov",
title = "{SOCR} Analyses: Implementation and Demonstration of a
New Graphical Statistics Educational Toolkit",
journal = j-J-STAT-SOFT,
volume = "30",
number = "3",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-10-13; Accepted 2009-01-29",
xxtitle = "{SOCR} Analyses: Implementation and Demonstration of a
New Graphical Statistics Educational Toolkit",
}
@Article{Murrell:2009:IVG,
author = "Paul Murrell",
title = "Importing Vector Graphics: The \pkg{grImport} Package
for {R}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "4",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-16; Accepted 2009-02-27",
xxtitle = "Importing Vector Graphics: The {grImport} Package for
R",
}
@Article{Johnson:2009:PSI,
author = "Jacqueline L. Johnson and Keith E. Muller and James C.
Slaughter and Matthew J. Gurka and Matthew J. Gribbin
and Sean L. Simpson",
title = "\pkg{POWERLIB}: {SAS\slash IML} Software for Computing
Power in Multivariate Linear Models",
journal = j-J-STAT-SOFT,
volume = "30",
number = "5",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v30/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-11-26; Accepted 2008-02-13",
xxtitle = "{POWERLIB}: {SAS}/{IML} Software for Computing Power
in Multivariate Linear Models",
}
@Article{Johansen:2009:SSM,
author = "Adam M. Johansen",
title = "\pkg{SMCTC}: Sequential {Monte Carlo} in {C++}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "6",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-08-29; Accepted 2009-03-24",
xxtitle = "{SMCTC}: Sequential Monte Carlo in
C$\mathplus\mathplus$",
}
@Article{Kontopantelis:2009:MMA,
author = "Evangelos Kontopantelis and David Reeves",
title = "\pkg{MetaEasy}: a Meta-Analysis Add-In for {Microsoft
Excel}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "7",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-04-23; Accepted 2009-03-17",
xxtitle = "{MetaEasy}: A Meta-Analysis Add-In for Microsoft
Excel",
}
@Article{Eugster:2009:SMH,
author = "Manuel J. A. Eugster and Friedrich Leisch",
title = "From {Spider-Man} to Hero --- Archetypal Analysis in
{R}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "8",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-11; Accepted 2009-04-21",
xxtitle = "From Spider-Man to Hero - Archetypal Analysis in R",
}
@Article{Iacus:2009:CSC,
author = "Stefano M. Iacus and Gary King and Giuseppe Porro",
title = "\pkg{cem}: Software for Coarsened Exact Matching",
journal = j-J-STAT-SOFT,
volume = "30",
number = "9",
pages = "??--??",
month = jun,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-08-20; Accepted 2009-04-06",
xxtitle = "cem: Software for Coarsened Exact Matching",
}
@Article{Holmes:2009:IJS,
author = "Susan Holmes and Adam Kapelner and Peter P. Lee",
title = "An Interactive {Java} Statistical Image Segmentation
System: \pkg{GemIdent}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "10",
pages = "??--??",
month = jun,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-08-09; Accepted 2009-01-15",
xxtitle = "An Interactive Java Statistical Image Segmentation
System: {GemIdent}",
}
@Article{Kao:2009:MOO,
author = "Ming-Hung Kao",
title = "Multi-Objective Optimal Experimental Designs for
{ER-fMRI} Using {MATLAB}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "11",
pages = "??--??",
month = jun,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v30/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-10-31; Accepted 2009-04-21",
xxtitle = "Multi-Objective Optimal Experimental Designs for
{ER}-{fMRI} Using {MATLAB}",
}
@Article{laGrange:2009:BIB,
author = "Anthony la Grange and Ni{\"e}l le Roux and Sugnet
Gardner-Lubbe",
title = "\pkg{BiplotGUI}: Interactive Biplots in {R}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "12",
pages = "??--??",
month = jun,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-29; Accepted 2009-03-17",
xxtitle = "{BiplotGUI}: Interactive Biplots in R",
}
@Article{Buttrey:2009:EAS,
author = "Samuel E. Buttrey",
title = "An {Excel} Add-In for Statistical Process Control
Charts",
journal = j-J-STAT-SOFT,
volume = "30",
number = "13",
pages = "??--??",
month = jun,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v030.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v30/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-13; Accepted 2009-03-18",
xxtitle = "An Excel Add-In for Statistical Process Control
Charts",
}
@Article{Bowman:2009:BRB,
author = "Adrian Bowman",
title = "Book Review: {{\booktitle{Morphometrics with R}}}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "BR-1",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-19; Accepted 2009-09-19",
}
@Article{Sabatti:2009:BRB,
author = "Chiara Sabatti and Christophe Lalanne",
title = "Book Review: {{\booktitle{Applied Statistical Genetics
with R for Population-Based Association Studies}}}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "BR-2",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-19; Accepted 2009-09-19",
}
@Article{Kukuyeva:2009:BRB,
author = "Irina Kukuyeva",
title = "Book Review: {{\booktitle{Principles of Modeling and
Simulation: A Multidisciplinary Approach}}}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "BR-3",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v31/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-25; Accepted 2009-09-25",
}
@Article{Rufibach:2009:CSR,
author = "Kaspar Rufibach",
title = "Code Snippet: reporttools: {R} Functions to Generate
{LaTeX} Tables of Descriptive Statistics",
journal = j-J-STAT-SOFT,
volume = "31",
number = "CS-1",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-13; Accepted 2009-05-05",
}
@Article{Pan:2009:CSS,
author = "Wei Pan",
title = "Code Snippet: a {SAS\slash IML} Macro for Computing
Percentage Points of {Pearson} Distributions",
journal = j-J-STAT-SOFT,
volume = "31",
number = "CS-2",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.c02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v31/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-17; Accepted 2009-07-07",
}
@Article{Dryver:2009:CSE,
author = "Arthur Dryver",
title = "Code Snippet: The Enhancement of Teaching Materials
for Applied Statistics Courses by Combining Random
Number Generation and Portable Document Format Files
via {\LaTeX}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "CS-3",
pages = "1--9",
month = sep,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.c03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v31/c03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-09-17; Accepted 2009-05-27",
}
@Article{Schmidberger:2009:SAP,
author = "Markus Schmidberger and Martin Morgan and Dirk
Eddelbuettel and Hao Yu and Luke Tierney and Ulrich
Mansmann",
title = "State of the Art in Parallel Computing with {R}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "1",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-29; Accepted 2009-06-02",
xxtitle = "State of the Art in Parallel Computing with R",
}
@Article{Meyer:2009:GCS,
author = "David Meyer and Kurt Hornik",
title = "Generalized and Customizable Sets in {R}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "2",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-21; Accepted 2009-06-11",
xxtitle = "Generalized and Customizable Sets in R",
}
@Article{deLeeuw:2009:MSU,
author = "Jan de Leeuw and Patrick Mair",
title = "Multidimensional Scaling Using Majorization: {SMACOF}
in {R}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "3",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-28; Accepted 2009-06-03",
xxtitle = "Multidimensional Scaling Using Majorization: {SMACOF}
in R",
}
@Article{deLeeuw:2009:GMO,
author = "Jan de Leeuw and Patrick Mair",
title = "{Gifi} Methods for Optimal Scaling in {R}: The Package
\pkg{homals}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "4",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-06; Accepted 2009-07-23",
xxtitle = "Gifi Methods for Optimal Scaling in R: The Package
homals",
}
@Article{deLeeuw:2009:SCC,
author = "Jan de Leeuw and Patrick Mair",
title = "Simple and Canonical Correspondence Analysis Using the
{R} Package \pkg{anacor}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "5",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-25; Accepted 2009-06-18",
xxtitle = "Simple and Canonical Correspondence Analysis Using the
R Package anacor",
}
@Article{Unlu:2009:FSR,
author = "Ali {\"U}nl{\"u} and Thomas Kiefer and Ehtibar N.
Dzhafarov",
title = "{Fechnerian} Scaling in {R}: The Package
\pkg{fechner}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "6",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-30; Accepted 2009-07-29",
xxtitle = "Fechnerian Scaling in R: The Package fechner",
}
@Article{Giorgino:2009:CVD,
author = "Toni Giorgino",
title = "Computing and Visualizing Dynamic Time Warping
Alignments in {R}: The \pkg{dtw} Package",
journal = j-J-STAT-SOFT,
volume = "31",
number = "7",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-09-30; Accepted 2009-06-26",
xxtitle = "Computing and Visualizing Dynamic Time Warping
Alignments in R: The dtw Package",
}
@Article{Lorenzo-Seva:2009:CMP,
author = "Urbano Lorenzo-Seva and Michel van de Velden and Henk
A. L. Kiers",
title = "\pkg{CAR}: a {MATLAB} Package to Compute
Correspondence Analysis with Rotations",
journal = j-J-STAT-SOFT,
volume = "31",
number = "8",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v31/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-18; Accepted 2009-07-14",
xxtitle = "{CAR}: A {MATLAB} Package to Compute Correspondence
Analysis with Rotations",
}
@Article{Polzehl:2009:SAS,
author = "J{\"o}rg Polzehl and Karsten Tabelow",
title = "Structural Adaptive Smoothing in Diffusion Tensor
Imaging: The {R} Package \pkg{dti}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "9",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-12; Accepted 2009-06-25",
xxtitle = "Structural Adaptive Smoothing in Diffusion Tensor
Imaging: The R Package dti",
}
@Article{Berens:2009:CMT,
author = "Philipp Berens",
title = "\pkg{CircStat}: a {MATLAB} Toolbox for Circular
Statistics",
journal = j-J-STAT-SOFT,
volume = "31",
number = "10",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v031.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v31/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-27; Accepted 2009-08-26",
xxtitle = "{CircStat}: A {MATLAB} Toolbox for Circular
Statistics",
}
@Article{Christ:2009:BRB,
author = "Aaron Christ",
title = "Book Review: {{\booktitle{Mixed Effects Models and
Extensions in Ecology with R}}}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "BR-1",
pages = "??--??",
month = nov,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-08; Accepted 2009-11-08",
}
@Article{Eddelbuettel:2009:BRBc,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{Computational Statistics: An
Introduction to R}}}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "BR-2",
pages = "??--??",
month = dec,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-22; Accepted 2009-12-22",
}
@Article{Lawson:2009:CSB,
author = "John Lawson and G. Bruce Schaalje and Bruce Jay
Collings",
title = "Code Snippet: Blocking Mixed-Level Factorials with
{SAS}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "CS-1",
pages = "??--??",
month = nov,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v32/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-06-07; Accepted 2009-06-22",
}
@Article{Fox:2009:EDR,
author = "John Fox and Jangman Hong",
title = "Effect Displays in {R} for Multinomial and
Proportional-Odds Logit Models: Extensions to the
\pkg{effects} Package",
journal = j-J-STAT-SOFT,
volume = "32",
number = "1",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-17; Accepted 2009-09-22",
xxtitle = "Effect Displays in R for Multinomial and
Proportional-Odds Logit Models: Extensions to the
effects Package",
}
@Article{Lupi:2009:URC,
author = "Claudio Lupi",
title = "Unit Root {CADF} Testing with {R}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "2",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-29; Accepted 2009-08-10",
xxtitle = "Unit Root {CADF} Testing with R",
}
@Article{Todorov:2009:OOF,
author = "Valentin Todorov and Peter Filzmoser",
title = "An Object-Oriented Framework for Robust Multivariate
Analysis",
journal = j-J-STAT-SOFT,
volume = "32",
number = "3",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v32/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-26; Accepted 2009-08-08",
xxtitle = "An Object-Oriented Framework for Robust Multivariate
Analysis",
}
@Article{Varadhan:2009:BRP,
author = "Ravi Varadhan and Paul Gilbert",
title = "\pkg{BB}: An {R} Package for Solving a Large System of
Nonlinear Equations and for Optimizing a
High-Dimensional Nonlinear Objective Function",
journal = j-J-STAT-SOFT,
volume = "32",
number = "4",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-31; Accepted 2009-06-29",
xxtitle = "{BB}: An R Package for Solving a Large System of
Nonlinear Equations and for Optimizing a
High-Dimensional Nonlinear Objective Function",
}
@Article{deLeeuw:2009:IOR,
author = "Jan de Leeuw and Kurt Hornik and Patrick Mair",
title = "Isotone Optimization in {R}: Pool-Adjacent-Violators
Algorithm ({PAVA}) and Active Set Methods",
journal = j-J-STAT-SOFT,
volume = "32",
number = "5",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-27; Accepted 2009-09-30",
xxtitle = "Isotone Optimization in R: Pool-Adjacent-Violators
Algorithm ({PAVA}) and Active Set Methods",
}
@Article{Benaglia:2009:MRP,
author = "Tatiana Benaglia and Didier Chauveau and David R.
Hunter and Derek S. Young",
title = "\pkg{mixtools}: An {R} Package for Analyzing Mixture
Models",
journal = j-J-STAT-SOFT,
volume = "32",
number = "6",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-28; Accepted 2009-08-18",
xxtitle = "mixtools: An R Package for Analyzing Finite Mixture
Models",
}
@Article{Lenth:2009:RSM,
author = "Russell V. Lenth",
title = "Response-Surface Methods in {R}, Using \pkg{rsm}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "7",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-04; Accepted 2009-10-19",
xxtitle = "Response-Surface Methods in R, Using rsm",
}
@Article{Grasman:2009:FCC,
author = "Raoul P. P. P. Grasman and Han L. J. van der Maas and
Eric-Jan Wagenmakers",
title = "Fitting the Cusp Catastrophe in {R}: a \pkg{cusp}
Package Primer",
journal = j-J-STAT-SOFT,
volume = "32",
number = "8",
pages = "??--??",
month = nov,
year = "2009",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-10; Accepted 2009-05-09",
xxtitle = "Fitting the Cusp Catastrophe in R: A cusp Package
Primer",
}
@Article{Soetaert:2010:BRB,
author = "Karline Soetaert",
title = "Book Review: {{\booktitle{A Primer of Ecology with
R}}}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "BR-3",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-06; Accepted 2010-01-06",
}
@Article{Sanchez:2010:BRBa,
author = "Juana Sanchez",
title = "Book Review: {{\booktitle{Introductory Time Series
with R}}}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "BR-4",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.b04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-11; Accepted 2010-01-11",
}
@Article{Zhou:2010:BRB,
author = "Qing Zhou",
title = "Book Review: {{\booktitle{A Guide to QTL Mapping with
R/qtl}}}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "BR-5",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.b05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v32/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-19; Accepted 2010-01-19",
}
@Article{Recchia:2010:CSR,
author = "Anthony Recchia",
title = "Code Snippet: {R}-Squared Measures for Two-Level
Hierarchical Linear Models Using {SAS}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "CS-2",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.c02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v32/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-02; Accepted 2009-12-17",
}
@Article{Mair:2010:GFM,
author = "Patrick Mair and Jan de Leeuw",
title = "A General Framework for Multivariate Analysis with
Optimal Scaling: The {R} Package \pkg{aspect}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "9",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-24; Accepted 2009-11-09",
xxtitle = "A General Framework for Multivariate Analysis with
Optimal Scaling: The R Package aspect",
}
@Article{Yee:2010:VPC,
author = "Thomas W. Yee",
title = "The {VGAM} Package for Categorical Data Analysis",
journal = j-J-STAT-SOFT,
volume = "32",
number = "10",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v32/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-18; Accepted 2009-10-19",
xxtitle = "The {VGAM} Package for Categorical Data Analysis",
}
@Article{Crainiceanu:2010:BFD,
author = "Ciprian M. Crainiceanu and A. Jeffrey Goldsmith",
title = "{Bayesian} Functional Data Analysis Using {WinBUGS}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "11",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v32/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-29; Accepted 2009-11-09",
xxtitle = "Bayesian Functional Data Analysis Using {WinBUGS}",
}
@Article{Muggeo:2010:ATE,
author = "Vito M. R. Muggeo",
title = "Analyzing Temperature Effects on Mortality Within the
{R} Environment: The Constrained Segmented Distributed
Lag Parameterization",
journal = j-J-STAT-SOFT,
volume = "32",
number = "12",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v032.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-16; Accepted 2009-12-11",
xxtitle = "Analyzing Temperature Effects on Mortality Within the
R Environment: The Constrained Segmented Distributed
Lag Parameterization",
}
@Article{Yalta:2010:BRB,
author = "A. Talha Yalta",
title = "Book Review: {{\booktitle{Hands-On Intermediate
Econometrics Using R}}}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "BR-1",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-26; Accepted 2010-01-26",
}
@Article{Ekstrom:2010:BRB,
author = "Joakim Ekstr{\"o}m",
title = "Book Review: {{\booktitle{Computation of Multivariate
Normal and t Probabilities}}}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "BR-2",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v33/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-02; Accepted 2010-02-02",
}
@Article{Gould:2010:BRB,
author = "Robert Gould",
title = "Book Review: {{\booktitle{A Modern Approach to
Regression with R}}}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "BR-3",
pages = "??--??",
month = mar,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-16; Accepted 2010-03-16",
}
@Article{Phillips:2010:CSR,
author = "Kem Phillips",
title = "Code Snippet: {R} Functions to Symbolically Compute
the Central Moments of the Multivariate Normal
Distribution",
journal = j-J-STAT-SOFT,
volume = "33",
number = "CS-1",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-21; Accepted 2009-11-20",
}
@Article{Recchia:2010:CSC,
author = "Anthony Recchia",
title = "Code Snippet: Contiguity-Constrained Hierarchical
Agglomerative Clustering Using {SAS}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "CS-2",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.c02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v33/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-13; Accepted 2010-01-29",
}
@Article{Friedman:2010:RPG,
author = "Jerome Friedman and Trevor Hastie and Rob Tibshirani",
title = "Regularization Paths for Generalized Linear Models via
Coordinate Descent",
journal = j-J-STAT-SOFT,
volume = "33",
number = "1",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v33/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-22; Accepted 2009-12-15",
xxtitle = "Regularization Paths for Generalized Linear Models via
Coordinate Descent",
}
@Article{Hadfield:2010:MMM,
author = "Jarrod D. Hadfield",
title = "{MCMC} Methods for Multi-Response Generalized Linear
Mixed Models: The \pkg{MCMCglmm} {R} Package",
journal = j-J-STAT-SOFT,
volume = "33",
number = "2",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-18; Accepted 2009-12-21",
xxtitle = "{MCMC} Methods for Multi-Response Generalized Linear
Mixed Models: The {MCMCglmm} R Package",
}
@Article{Soetaert:2010:IMS,
author = "Karline Soetaert and Thomas Petzoldt",
title = "Inverse Modelling, Sensitivity and {Monte Carlo}
Analysis in {R} Using Package \pkg{FME}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "3",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-22; Accepted 2010-01-18",
xxtitle = "Inverse Modelling, Sensitivity and Monte Carlo
Analysis in R Using Package {FME}",
}
@Article{Chang:2010:CRP,
author = "Fang Chang and Weiliang Qiu and Ruben H. Zamar and
Ross Lazarus and Xiaogang Wang",
title = "\pkg{clues}: An {R} Package for Nonparametric
Clustering Based on Local Shrinking",
journal = j-J-STAT-SOFT,
volume = "33",
number = "4",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-26; Accepted 2010-01-31",
xxtitle = "clues: An R Package for Nonparametric Clustering Based
on Local Shrinking",
}
@Article{Kugiumtzis:2010:MAT,
author = "Dimitris Kugiumtzis and Alkiviadis Tsimpiris",
title = "Measures of Analysis of Time Series ({MATS}): a
{MATLAB} Toolkit for Computation of Multiple Measures
on Time Series Data Bases",
journal = j-J-STAT-SOFT,
volume = "33",
number = "5",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v33/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-13; Accepted 2010-01-11",
xxtitle = "Measures of Analysis of Time Series ( {MATS} ): A
{MATLAB} Toolkit for Computation of Multiple Measures
on Time Series Data Bases",
}
@Article{Gramacy:2010:CIS,
author = "Robert B. Gramacy and Matthew Alan Taddy",
title = "Categorical Inputs, Sensitivity Analysis, Optimization
and Importance Tempering with \pkg{tgp} Version 2, an
{R} Package for Treed {Gaussian} Process Models",
journal = j-J-STAT-SOFT,
volume = "33",
number = "6",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-17; Accepted 2009-12-23",
xxtitle = "Categorical Inputs, Sensitivity Analysis, Optimization
and Importance Tempering with tgp Version 2, an R
Package for Treed Gaussian Process Models",
}
@Article{Kahm:2010:GFB,
author = "Matthias Kahm and Guido Hasenbrink and Hella
Lichtenberg-Frat{\'e} and Jost Ludwig and Maik
Kschischo",
title = "\pkg{grofit}: Fitting Biological Growth Curves with
{R}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "7",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-14; Accepted 2009-06-18",
xxtitle = "grofit: Fitting Biological Growth Curves with R",
}
@Article{Zang:2010:SAC,
author = "Yong Zang and Wing Kam Fung and Gang Zheng",
title = "Simple Algorithms to Calculate Asymptotic Null
Distributions of Robust Tests in Case-Control Genetic
Association Studies in {R}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "8",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-05; Accepted 2009-11-10",
xxtitle = "Simple Algorithms to Calculate Asymptotic Null
Distributions of Robust Tests in Case-Control Genetic
Association Studies in R",
}
@Article{Soetaert:2010:SDE,
author = "Karline Soetaert and Thomas Petzoldt and R. Woodrow
Setzer",
title = "Solving Differential Equations in {R}: Package
\pkg{deSolve}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "9",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-17; Accepted 2010-02-12",
xxtitle = "Solving Differential Equations in R: Package
{deSolve}",
}
@Article{Gromping:2010:ILE,
author = "Ulrike Gr{\"o}mping",
title = "Inference with Linear Equality and Inequality
Constraints Using {R}: The Package \pkg{ic.infer}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "10",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-08-20; Accepted 2009-12-16",
xxtitle = "Inference with Linear Equality and Inequality
Constraints Using R: The Package ic.infer",
}
@Article{Hankin:2010:GDD,
author = "Robin K. S. Hankin",
title = "A Generalization of the {Dirichlet} Distribution",
journal = j-J-STAT-SOFT,
volume = "33",
number = "11",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v033.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v33/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-09-30; Accepted 2010-02-15",
xxtitle = "A Generalization of the Dirichlet Distribution",
}
@Article{Wickham:2010:BRBa,
author = "Hadley Wickham",
title = "Book Review: {{\booktitle{Making Sense of Data II: A
Practical Guide to Data Visualization, Advanced Data
Mining Methods, and Applications}}}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "BR-1",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v34/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-04-08; Accepted 2010-04-08",
}
@Article{Strobl:2010:BRB,
author = "Carolin Strobl",
title = "Book Review: {{\booktitle{Advances in Social Science
Research Using R}}}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "BR-2",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-04-13; Accepted 2010-04-13",
}
@Article{Bowman:2010:BRB,
author = "Adrian Bowman",
title = "Book Review: {{\booktitle{Functional Data Analysis
with R and MATLAB}}}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "BR-3",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-04-15; Accepted 2010-04-15",
}
@Article{Zeileis:2010:EMF,
author = "Achim Zeileis and Yves Croissant",
title = "Extended Model Formulas in {R}: Multiple Parts and
Multiple Responses",
journal = j-J-STAT-SOFT,
volume = "34",
number = "1",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-23; Accepted 2010-03-23",
xxtitle = "Extended Model Formulas in R: Multiple Parts and
Multiple Responses",
}
@Article{Cribari-Neto:2010:BRR,
author = "Francisco Cribari-Neto and Achim Zeileis",
title = "Beta Regression in {R}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "2",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-14; Accepted 2010-03-14",
xxtitle = "Beta Regression in R",
}
@Article{Sheng:2010:BEM,
author = "Yanyan Sheng",
title = "{Bayesian} Estimation of {MIRT} Models with General
and Specific Latent Traits in {MATLAB}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "3",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v34/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-10-30; Accepted 2010-03-26",
xxtitle = "Bayesian Estimation of {MIRT} Models with General and
Specific Latent Traits in {MATLAB}",
}
@Article{Almiron:2010:NAS,
author = "Marcelo G. Almiron and Bruno Lopes and Alyson L. C.
Oliveira and Antonio C. Medeiros and Alejandro C.
Frery",
title = "On the Numerical Accuracy of Spreadsheets",
journal = j-J-STAT-SOFT,
volume = "34",
number = "4",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v34/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-11; Accepted 2010-01-31",
xxtitle = "On the Numerical Accuracy of Spreadsheets",
}
@Article{Pateiro-Lopez:2010:GCH,
author = "Beatriz Pateiro-L{\'o}pez and Alberto
Rodr{\'\i}guez-Casal",
title = "Generalizing the Convex Hull of a Sample: The {R}
Package \pkg{alphahull}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "5",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-03; Accepted 2009-07-07",
xxtitle = "Generalizing the Convex Hull of a Sample: The R
Package alphahull",
}
@Article{Boik:2010:RPA,
author = "John C. Boik and Balasubramanian Narasimhan",
title = "An {R} Package for Assessing Drug Synergism\slash
Antagonism",
journal = j-J-STAT-SOFT,
volume = "34",
number = "6",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-10-03; Accepted 2010-01-27",
xxtitle = "An R Package for Assessing Drug Synergism/Antagonism",
}
@Article{Archer:2010:RRP,
author = "Kellie J. Archer",
title = "\pkg{rpartOrdinal}: An {R} Package for Deriving a
Classification Tree for Predicting an Ordinal
Response",
journal = j-J-STAT-SOFT,
volume = "34",
number = "7",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-07; Accepted 2010-03-18",
xxtitle = "{rpartOrdinal}: An R Package for Deriving a
Classification Tree for Predicting an Ordinal
Response",
}
@Article{Kuiper:2010:FPC,
author = "Rebecca M. Kuiper and Irene Klugkist and Herbert
Hoijtink",
title = "A {Fortran 90} Program for Confirmatory Analysis of
Variance",
journal = j-J-STAT-SOFT,
volume = "34",
number = "8",
pages = "??--??",
month = may,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v34/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-12; Accepted 2009-12-17",
xxtitle = "A Fortran 90 Program for Confirmatory Analysis of
Variance",
}
@Article{Kojadinovic:2010:MMD,
author = "Ivan Kojadinovic and Jun Yan",
title = "Modeling Multivariate Distributions with Continuous
Margins Using the \pkg{copula} {R} Package",
journal = j-J-STAT-SOFT,
volume = "34",
number = "9",
pages = "??--??",
month = may,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-07; Accepted 2010-04-23",
xxtitle = "Modeling Multivariate Distributions with Continuous
Margins Using the copula R Package",
}
@Article{Leibovici:2010:STM,
author = "Didier G. Leibovici",
title = "Spatio-Temporal Multiway Data Decomposition Using
Principal Tensor Analysis on $k$-Modes: The {R} Package
\pkg{PTAk}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "10",
pages = "??--??",
month = may,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-08; Accepted 2009-08-19",
xxtitle = "Spatio-Temporal Multiway Decompositions Using
Principal Tensor Analysis on k -Modes: The R Package
{PTAk}",
}
@Article{Chausse:2010:CGM,
author = "Pierre Chauss{\'e}",
title = "Computing Generalized Method of Moments and
Generalized Empirical Likelihood with {R}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "11",
pages = "??--??",
month = may,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-26; Accepted 2010-01-29",
xxtitle = "Computing Generalized Method of Moments and
Generalized Empirical Likelihood with R",
}
@Article{Calcagno:2010:GRP,
author = "Vincent Calcagno and Claire de Mazancourt",
title = "\pkg{glmulti}: An {R} Package for Easy Automated Model
Selection with (Generalized) Linear Models",
journal = j-J-STAT-SOFT,
volume = "34",
number = "12",
pages = "??--??",
month = may,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v034.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-19; Accepted 2010-01-29",
xxtitle = "glmulti: An R Package for Easy Automated Model
Selection with (Generalized) Linear Models",
}
@Article{Valero-Mora:2010:BRB,
author = "Pedro M. Valero-Mora",
title = "Book Review: {{\booktitle{\pkg{ggplot2}: Elegant
Graphics for Data Analysis}}}",
journal = j-J-STAT-SOFT,
volume = "35",
number = "BR-1",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v35/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-29; Accepted 2010-07-29",
}
@Article{Dhand:2010:CSU,
author = "Navneet K. Dhand",
title = "Code Snippet: {UniLogistic}: a {SAS} Macro for
Descriptive and Univariable Logistic Regression
Analyses",
journal = j-J-STAT-SOFT,
volume = "35",
number = "CS-1",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v35/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-06; Accepted 2010-04-18",
}
@Article{Xia:2010:CSP,
author = "Xiao-Qin Xia and Michael McClelland and Yipeng Wang",
title = "Code Snippet: \pkg{PypeR}, a {Python} Package for
Using {R} in {Python}",
journal = j-J-STAT-SOFT,
volume = "35",
number = "CS-2",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.c02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-10-23; Accepted 2010-03-23",
}
@Article{Piras:2010:SSM,
author = "Gianfranco Piras",
title = "\pkg{sphet}: Spatial Models with Heteroskedastic
Innovations in {R}",
journal = j-J-STAT-SOFT,
volume = "35",
number = "1",
pages = "??--??",
month = jun,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-10-26; Accepted 2010-03-31",
xxtitle = "sphet: Spatial Models with Heteroskedastic Innovations
in R",
}
@Article{Kim:2010:PQS,
author = "Hanjoo Kim and Justine Shults",
title = "\pkg{{\%QLS}} {SAS} Macro: a {SAS} Macro for Analysis
of Correlated Data Using Quasi-Least Squares",
journal = j-J-STAT-SOFT,
volume = "35",
number = "2",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v35/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-08-01; Accepted 2009-01-05",
xxtitle = "{\%}{QLS} {SAS} Macro: A {SAS} Macro for Analysis of
Correlated Data Using Quasi-Least Squares",
}
@Article{Scutari:2010:LBN,
author = "Marco Scutari",
title = "Learning {Bayesian} Networks with the \pkg{bnlearn}
{R} Package",
journal = j-J-STAT-SOFT,
volume = "35",
number = "3",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-30; Accepted 2010-05-13",
xxtitle = "Learning Bayesian Networks with the bnlearn R
Package",
}
@Article{Patil:2010:PBS,
author = "Anand Patil and David Huard and Christopher J.
Fonnesbeck",
title = "\pkg{PyMC}: {Bayesian} Stochastic Modelling in
{Python}",
journal = j-J-STAT-SOFT,
volume = "35",
number = "4",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v35/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-22; Accepted 2010-01-22",
xxtitle = "{PyMC}: Bayesian Stochastic Modelling in Python",
}
@Article{Hahsler:2010:REM,
author = "Michael Hahsler and Margaret H. Dunham",
title = "\pkg{rEMM}: Extensible {Markov} Model for Data Stream
Clustering in {R}",
journal = j-J-STAT-SOFT,
volume = "35",
number = "5",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-26; Accepted 2010-05-10",
xxtitle = "{rEMM}: Extensible Markov Model for Data Stream
Clustering in R",
}
@Article{Hu:2010:COD,
author = "Jiaqiao Hu and Wei Zhu and Yi Su and Weng Kee Wong",
title = "Controlled Optimal Design Program for the Logit Dose
Response Model",
journal = j-J-STAT-SOFT,
volume = "35",
number = "6",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v35/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-04; Accepted 2009-11-20",
xxtitle = "Controlled Optimal Design Program for the Logit Dose
Response Model",
}
@Article{Santana:2010:MMP,
author = "Roberto Santana and Concha Bielza and Pedro
Larra{\~n}aga and Jose A. Lozano and Carlos Echegoyen
and Alexander Mendiburu and Rub{\'e}n Arma{\~n}anzas
and Siddartha Shakya",
title = "\pkg{Mateda-2.0}: a {MATLAB} Package for the
Implementation and Analysis of Estimation of
Distribution Algorithms",
journal = j-J-STAT-SOFT,
volume = "35",
number = "7",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v35/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-15; Accepted 2009-12-17",
xxtitle = "Mateda-2.0: A {MATLAB} Package for the Implementation
and Analysis of Estimation of Distribution Algorithms",
}
@Article{Harte:2010:PRP,
author = "David Harte",
title = "\pkg{PtProcess}: An {R} Package for Modelling Marked
Point Processes Indexed by Time",
journal = j-J-STAT-SOFT,
volume = "35",
number = "8",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-11; Accepted 2010-05-03",
xxtitle = "{PtProcess}: An R Package for Modelling Marked Point
Processes Indexed by Time",
}
@Article{Rizopoulos:2010:JRP,
author = "Dimitris Rizopoulos",
title = "\pkg{JM}: An {R} Package for the Joint Modelling of
Longitudinal and Time-to-Event Data",
journal = j-J-STAT-SOFT,
volume = "35",
number = "9",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-31; Accepted 2010-07-07",
xxtitle = "{JM}: An R Package for the Joint Modelling of
Longitudinal and Time-to-Event Data",
}
@Article{Kohl:2010:RPD,
author = "Matthias Kohl and Peter Ruckdeschel",
title = "{R} Package \pkg{distrMod}: {S4} Classes and Methods
for Probability Models",
journal = j-J-STAT-SOFT,
volume = "35",
number = "10",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-07; Accepted 2010-04-19",
xxtitle = "R Package {distrMod}: S 4 Classes and Methods for
Probability Models",
}
@Article{Liu:2010:ICR,
author = "Hai Liu and Kung-Sik Chan",
title = "Introducing {COZIGAM}: An {R} Package for
Unconstrained and Constrained Zero-Inflated Generalized
Additive Model Analysis",
journal = j-J-STAT-SOFT,
volume = "35",
number = "11",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-25; Accepted 2009-07-13",
xxtitle = "Introducing {COZIGAM}: An R Package for Unconstrained
and Constrained Zero-Inflated Generalized Additive
Model Analysis",
}
@Article{Weeks:2010:PRP,
author = "Jonathan P. Weeks",
title = "\pkg{plink}: An {R} Package for Linking Mixed-Format
Tests Using {IRT}-Based Methods",
journal = j-J-STAT-SOFT,
volume = "35",
number = "12",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v035.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-30; Accepted 2010-05-10",
xxtitle = "plink: An R Package for Linking Mixed-Format Tests
Using {IRT}-Based Methods",
}
@Article{Hilbe:2010:BRBb,
author = "Joseph Hilbe",
title = "Book Review: {{\booktitle{Bayesian Analysis for
Population Ecology}}}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-1",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v36/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-08-08; Accepted 2010-08-08",
}
@Article{Leong:2010:BRB,
author = "Chee Kian Leong",
title = "Book Review: {{\booktitle{R in a Nutshell}}}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-2",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-08-19; Accepted 2010-08-19",
}
@Article{Wickham:2010:BRBb,
author = "Hadley Wickham and Garrett Grolemund",
title = "Book Review: {{\booktitle{Graphics for Statistics and
Data Analysis with R}}}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-3",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-01; Accepted 2010-09-01",
}
@Article{Hilbe:2010:BRBa,
author = "Joseph Hilbe",
title = "Book Review: {{\booktitle{Introduction to Scientific
Programming and Scientific Simulation Using R}}}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-4",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.b04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-16; Accepted 2010-09-16",
}
@Article{Derquenne:2010:BRB,
author = "Christian Derquenne",
title = "Book Review: {{\booktitle{Regression Modeling:
Methods, Theory, and Computation with SAS}}}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-5",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.b05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v36/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-21; Accepted 2010-09-21",
}
@Article{Sanchez:2010:BRBb,
author = "Juana Sanchez",
title = "Book Review: {{\booktitle{Data Analysis and Graphics
Using R --- An Example-Based Approach}} (3rd
Edition)}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-6",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.b06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-21; Accepted 2010-09-21",
}
@Article{Curtis:2010:CSB,
author = "S. McKay Curtis",
title = "Code Snippet: {BUGS} Code for Item Response Theory",
journal = j-J-STAT-SOFT,
volume = "36",
number = "CS-1",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v36/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-30; Accepted 2010-07-07",
}
@Article{Ferstl:2010:ZCY,
author = "Robert Ferstl and Josef Hayden",
title = "Zero-Coupon Yield Curve Estimation with the Package
\pkg{termstrc}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "1",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v36/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-21; Accepted 2010-06-06",
xxtitle = "Zero-Coupon Yield Curve Estimation with the Package
termstrc",
}
@Article{Fay:2010:EAW,
author = "Michael P. Fay and Pamela A. Shaw",
title = "Exact and Asymptotic Weighted Logrank Tests for
Interval Censored Data: The \pkg{interval} {R}
Package",
journal = j-J-STAT-SOFT,
volume = "36",
number = "2",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-02; Accepted 2010-03-18",
xxtitle = "Exact and Asymptotic Weighted Logrank Tests for
Interval Censored Data: The interval R Package",
}
@Article{Viechtbauer:2010:CMA,
author = "Wolfgang Viechtbauer",
title = "Conducting Meta-Analyses in {R} with the \pkg{metafor}
Package",
journal = j-J-STAT-SOFT,
volume = "36",
number = "3",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-16; Accepted 2010-06-24",
xxtitle = "Conducting Meta-Analyses in R with the metafor
Package",
}
@Article{Brouste:2010:SMI,
author = "Alexandre Brouste and Jacques Istas and Sophie
Lambert-Lacroix",
title = "On Simulation of Manifold Indexed Fractional
{Gaussian} Fields",
journal = j-J-STAT-SOFT,
volume = "36",
number = "4",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v36/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-10-02; Accepted 2010-06-06",
xxtitle = "On Simulation of Manifold Indexed Fractional Gaussian
Fields",
}
@Article{Young:2010:TRP,
author = "Derek S. Young",
title = "\pkg{tolerance}: An {R} Package for Estimating
Tolerance Intervals",
journal = j-J-STAT-SOFT,
volume = "36",
number = "5",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-01; Accepted 2010-06-24",
xxtitle = "tolerance: An R Package for Estimating Tolerance
Intervals",
}
@Article{Merl:2010:ARP,
author = "Daniel Merl and Leah R. Johnson and Robert B. Gramacy
and Marc Mangel",
title = "\pkg{amei}: An {R} Package for the Adaptive Management
of Epidemiological Interventions",
journal = j-J-STAT-SOFT,
volume = "36",
number = "6",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-22; Accepted 2010-06-24",
xxtitle = "amei: An R Package for the Adaptive Management of
Epidemiological Interventions",
}
@Article{Visser:2010:DRP,
author = "Ingmar Visser and Maarten Speekenbrink",
title = "\pkg{depmixS4}: An {R} Package for Hidden {Markov}
Models",
journal = j-J-STAT-SOFT,
volume = "36",
number = "7",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-19; Accepted 2010-06-21",
xxtitle = "{depmixS}4: An R Package for Hidden Markov Models",
}
@Article{Glaab:2010:VRP,
author = "Enrico Glaab and Jonathan M. Garibaldi and Natalio
Krasnogor",
title = "\pkg{vrmlgen}: An {R} Package for {$3$D} Data
Visualization on the {Web}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "8",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-25; Accepted 2010-06-06",
xxtitle = "vrmlgen: An R Package for 3D Data Visualization on the
Web",
}
@Article{Iam-on:2010:LMP,
author = "Natthakan Iam-on and Simon Garrett",
title = "\pkg{LinkCluE}: a {MATLAB} Package for Link-Based
Cluster Ensembles",
journal = j-J-STAT-SOFT,
volume = "36",
number = "9",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v36/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-11; Accepted 2010-06-24",
xxtitle = "{LinkCluE}: A {MATLAB} Package for Link-Based Cluster
Ensembles",
}
@Article{Furrer:2010:SSM,
author = "Reinhard Furrer and Stephan R. Sain",
title = "\pkg{spam}: a Sparse Matrix {R} Package with Emphasis
on {MCMC} Methods for {Gaussian Markov} Random Fields",
journal = j-J-STAT-SOFT,
volume = "36",
number = "10",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-04; Accepted 2010-05-31",
xxtitle = "spam: A Sparse Matrix R Package with Emphasis on
{MCMC} Methods for Gaussian Markov Random Fields",
}
@Article{Kursa:2010:FSB,
author = "Miron B. Kursa and Witold R. Rudnicki",
title = "Feature Selection with the \pkg{Boruta} Package",
journal = j-J-STAT-SOFT,
volume = "36",
number = "11",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v36/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-03; Accepted 2010-07-29",
xxtitle = "Feature Selection with the Boruta Package",
}
@Article{Petris:2010:RPD,
author = "Giovanni Petris",
title = "An {R} Package for Dynamic Linear Models",
journal = j-J-STAT-SOFT,
volume = "36",
number = "12",
pages = "??--??",
month = oct,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-20; Accepted 2010-03-05",
xxtitle = "An R Package for Dynamic Linear Models",
}
@Article{Bowman:2010:ITT,
author = "Adrian W. Bowman and Iain Gibson and Ewan Marian Scott
and Ewan Crawford",
title = "Interactive Teaching Tools for Spatial Sampling",
journal = j-J-STAT-SOFT,
volume = "36",
number = "13",
pages = "??--??",
month = oct,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v036.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v36/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-15; Accepted 2010-02-03",
xxtitle = "Interactive Teaching Tools for Spatial Sampling",
}
@Article{Hamilton:2010:BRB,
author = "Cody Hamilton",
title = "Book Review: {{\booktitle{Bayesian Adaptive Methods
for Clinical Trials}}}",
journal = j-J-STAT-SOFT,
volume = "37",
number = "BR-1",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v37/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-11-08; Accepted 2010-11-08",
}
@Article{Gromping:2010:BRB,
author = "Ulrike Gr{\"o}mping",
title = "Book Review: {{\booktitle{Design and Analysis of
Experiments with SAS}}}",
journal = j-J-STAT-SOFT,
volume = "37",
number = "BR-2",
pages = "??--??",
month = dec,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v37/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-18; Accepted 2010-12-18",
}
@Article{Ooms:2010:BRB,
author = "Jeroen Ooms",
title = "Book Review: {{\booktitle{SAS and R}}}",
journal = j-J-STAT-SOFT,
volume = "37",
number = "BR-3",
pages = "??--??",
month = dec,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v37/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-01-03; Accepted 2011-01-03",
}
@Article{Abreu:2010:HDG,
author = "Gabriel C. G. Abreu and David Edwards and Rodrigo
Labouriau",
title = "High-Dimensional Graphical Model Search with the
\pkg{gRapHD} {R} Package",
journal = j-J-STAT-SOFT,
volume = "37",
number = "1",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-19; Accepted 2010-08-23",
xxtitle = "High-Dimensional Graphical Model Search with the
{gRapHD} R Package",
}
@Article{Unlu:2010:PDR,
author = "Ali {\"U}nl{\"u} and Anatol Sargin",
title = "\pkg{DAKS}: An {R} Package for Data Analysis Methods
in Knowledge Space Theory",
journal = j-J-STAT-SOFT,
volume = "37",
number = "2",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-22; Accepted 2010-08-20",
xxtitle = "{DAKS}: An R Package for Data Analysis Methods in
Knowledge Space Theory",
}
@Article{Alfons:2010:OOF,
author = "Andreas Alfons and Matthias Templ and Peter
Filzmoser",
title = "An Object-Oriented Framework for Statistical
Simulation: The {R} Package \pkg{simFrame}",
journal = j-J-STAT-SOFT,
volume = "37",
number = "3",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-31; Accepted 2010-09-24",
xxtitle = "An Object-Oriented Framework for Statistical
Simulation: The R Package {simFrame}",
}
@Article{Friendly:2010:PRM,
author = "Michael Friendly",
title = "{HE} Plots for Repeated Measures Designs",
journal = j-J-STAT-SOFT,
volume = "37",
number = "4",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v37/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-22; Accepted 2010-06-19",
xxtitle = "{HE} Plots for Repeated Measures Designs",
}
@Article{Marley:2010:NSS,
author = "Jennifer K. Marley and Matthew P. Wand",
title = "Non-Standard Semiparametric Regression via {BRugs}",
journal = j-J-STAT-SOFT,
volume = "37",
number = "5",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v37/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-15; Accepted 2010-06-21",
xxtitle = "Non-Standard Semiparametric Regression via {BRugs}",
}
@Article{Almquist:2010:UCS,
author = "Zack W. Almquist",
title = "{US} Census Spatial and Demographic Data in {R}: The
\pkg{UScensus2000} Suite of Packages",
journal = j-J-STAT-SOFT,
volume = "37",
number = "6",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-29; Accepted 2010-10-04",
xxtitle = "{US} Census Spatial and Demographic Data in R: The
{UScensus}2000 Suite of Packages",
}
@Article{Moreira:2010:DRP,
author = "Carla Moreira and Jacobo de U{\~n}a-{\'A}lvarez and
Rosa M. Crujeiras",
title = "\pkg{DTDA}: An {R} Package to Analyze Randomly
Truncated Data",
journal = j-J-STAT-SOFT,
volume = "37",
number = "7",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-11; Accepted 2010-07-07",
xxtitle = "{DTDA}: An R Package to Analyze Randomly Truncated
Data",
}
@Article{Lawrence:2010:RGU,
author = "Michael Lawrence and Duncan Temple Lang",
title = "{RGtk2}: a Graphical User Interface Toolkit for {R}",
journal = j-J-STAT-SOFT,
volume = "37",
number = "8",
pages = "??--??",
month = dec,
year = "2010",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v037.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-30; Accepted 2009-09-23",
xxtitle = "{RGtk}2: A Graphical User Interface Toolkit for R",
}
@Article{Putter:2011:SIA,
author = "Hein Putter",
title = "Special Issue about Competing Risks and Multi-State
Models",
journal = j-J-STAT-SOFT,
volume = "38",
number = "1",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v038.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v38/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-01-03; Accepted 2011-01-03",
xxtitle = "Special Issue about Competing Risks and Multi-State
Models",
}
@Article{Scheike:2011:ACR,
author = "Thomas H. Scheike and Mei-Jie Zhang",
title = "Analyzing Competing Risk Data Using the {R}
\pkg{timereg} Package",
journal = j-J-STAT-SOFT,
volume = "38",
number = "2",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v038.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-25; Accepted 2010-06-22",
xxtitle = "Analyzing Competing Risk Data Using the R timereg
Package",
}
@Article{Meira-Machado:2011:PPM,
author = "Lu{\'\i}s Meira-Machado and Javier Roca-Pardi{\~n}as",
title = "\pkg{p3state.msm}: Analyzing Survival Data from an
Illness-Death Model",
journal = j-J-STAT-SOFT,
volume = "38",
number = "3",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v038.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v38/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-30; Accepted 2010-03-02",
xxtitle = "p3state.msm: Analyzing Survival Data from an
Illness-Death Model",
}
@Article{Allignol:2011:ETM,
author = "Arthur Allignol and Martin Schumacher and Jan
Beyersmann",
title = "Empirical Transition Matrix of Multi-State Models: The
\pkg{etm} Package",
journal = j-J-STAT-SOFT,
volume = "38",
number = "4",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v038.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v38/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-08; Accepted 2010-03-11",
xxtitle = "Empirical Transition Matrix of Multi-State Models: The
etm Package",
}
@Article{Plummer:2011:LRC,
author = "Martyn Plummer and Bendix Carstensen",
title = "{Lexis}: An {R} Class for Epidemiological Studies with
Long-Term Follow-Up",
journal = j-J-STAT-SOFT,
volume = "38",
number = "5",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v038.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-09; Accepted 2010-09-16",
xxtitle = "Lexis: An R Class for Epidemiological Studies with
Long-Term Follow-Up",
}
@Article{Carstensen:2011:ULO,
author = "Bendix Carstensen and Martyn Plummer",
title = "Using {Lexis} Objects for Multi-State Models in {R}",
journal = j-J-STAT-SOFT,
volume = "38",
number = "6",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v038.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-09; Accepted 2010-09-16",
xxtitle = "Using Lexis Objects for Multi-State Models in R",
}
@Article{deWreede:2011:MRP,
author = "Liesbeth C. de Wreede and Marta Fiocco and Hein
Putter",
title = "\pkg{mstate}: An {R} Package for the Analysis of
Competing Risks and Multi-State Models",
journal = j-J-STAT-SOFT,
volume = "38",
number = "7",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v038.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-17; Accepted 2010-08-20",
xxtitle = "mstate: An R Package for the Analysis of Competing
Risks and Multi-State Models",
}
@Article{Jackson:2011:MSM,
author = "Christopher H. Jackson",
title = "Multi-State Models for Panel Data: The \pkg{msm}
Package for {R}",
journal = j-J-STAT-SOFT,
volume = "38",
number = "8",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v038.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-21; Accepted 2010-08-18",
xxtitle = "Multi-State Models for Panel Data: The msm Package for
R",
}
@Article{Christou:2011:BRB,
author = "Nicolas Christou",
title = "Book Review: {{\booktitle{Statistical Methods in
e-Commerce Research}}}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "BR-1",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v39/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-03-01; Accepted 2011-03-01",
}
@Article{Hoffmann:2011:CSP,
author = "Thomas J. Hoffmann",
title = "Code Snippet: Passing in Command Line Arguments and
Parallel Cluster\slash Multicore Batching in {R} with
\pkg{batch}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "CS-1",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-16; Accepted 2010-08-09",
}
@Article{Beliakov:2011:CSF,
author = "Gleb Beliakov",
title = "Code Snippet: Fast Computation of Trimmed Means",
journal = j-J-STAT-SOFT,
volume = "39",
number = "CS-2",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.c02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v39/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-06-07; Accepted 2010-10-28",
}
@Article{Davies:2011:SAS,
author = "Tilman M. Davies and Martin L. Hazelton and Jonathan
C. Marshall",
title = "\pkg{sparr}: Analyzing Spatial Relative Risk Using
Fixed and Adaptive Kernel Density Estimation in {R}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "1",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-05-02; Accepted 2010-08-10",
xxtitle = "sparr: Analyzing Spatial Relative Risk Using Fixed and
Adaptive Kernel Density Estimation in R",
}
@Article{Tusell:2011:KFR,
author = "Fernando Tusell",
title = "{Kalman} Filtering in {R}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "2",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-12; Accepted 2010-08-17",
xxtitle = "Kalman Filtering in R",
}
@Article{Cook:2011:LPL,
author = "R. Dennis Cook and Liliana M. Forzani and Diego R.
Tomassi",
title = "{LDR}: a Package for Likelihood-Based Sufficient
Dimension Reduction",
journal = j-J-STAT-SOFT,
volume = "39",
number = "3",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v39/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-27; Accepted 2010-09-11",
xxtitle = "{LDR}: A Package for Likelihood-Based Sufficient
Dimension Reduction",
}
@Article{OConnell:2011:HSM,
author = "Jared O'Connell and S{\o}ren H{\o}jsgaard",
title = "Hidden Semi {Markov} Models for Multiple Observation
Sequences: The \pkg{mhsmm} Package for {R}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "4",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-02; Accepted 2010-09-29",
xxtitle = "Hidden Semi Markov Models for Multiple Observation
Sequences: The mhsmm Package for R",
}
@Article{Simon:2011:RPC,
author = "Noah Simon and Jerome H. Friedman and Trevor Hastie
and Rob Tibshirani",
title = "Regularization Paths for {Cox}'s {Proportional Hazards
Model} via Coordinate Descent",
journal = j-J-STAT-SOFT,
volume = "39",
number = "5",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v39/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-06-15; Accepted 2010-10-02",
xxtitle = "Regularization Paths for Cox's Proportional Hazards
Model via Coordinate Descent",
}
@Article{Dumbgen:2011:PLC,
author = "Lutz D{\"u}mbgen and Kaspar Rufibach",
title = "\pkg{logcondens}: Computations Related to Univariate
Log-Concave Density Estimation",
journal = j-J-STAT-SOFT,
volume = "39",
number = "6",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v39/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-11; Accepted 2010-10-06",
xxtitle = "logcondens: Computations Related to Univariate
Log-Concave Density Estimation",
}
@Article{Dinges:2011:OSA,
author = "Gerlinde Dinges and Alexander Kowarik and Bernhard
Meindl and Matthias Templ",
title = "An Open Source Approach for Modern Teaching Methods:
The Interactive {TGUI} System",
journal = j-J-STAT-SOFT,
volume = "39",
number = "7",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v39/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-19; Accepted 2010-04-23",
xxtitle = "An Open Source Approach for Modern Teaching Methods:
The Interactive {TGUI} System",
}
@Article{Choi:2011:LRP,
author = "Seung W. Choi and Laura E. Gibbons and Paul K. Crane",
title = "\pkg{lordif}: An {R} Package for Detecting
Differential Item Functioning Using Iterative Hybrid
Ordinal Logistic Regression\slash Item Response Theory
and {Monte Carlo} Simulations",
journal = j-J-STAT-SOFT,
volume = "39",
number = "8",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-02; Accepted 2010-10-23",
xxtitle = "lordif: An R Package for Detecting Differential Item
Functioning Using Iterative Hybrid Ordinal Logistic
Regression/Item Response Theory and Monte Carlo
Simulations",
}
@Article{Hofert:2011:NAC,
author = "Marius Hofert and Martin M{\"a}chler",
title = "Nested {Archimedean} Copulas Meet {R}: The
\pkg{nacopula} Package",
journal = j-J-STAT-SOFT,
volume = "39",
number = "9",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-01; Accepted 2010-11-15",
xxtitle = "Nested Archimedean Copulas Meet R: The nacopula
Package",
}
@Article{Wang:2011:DEM,
author = "Xiao-Feng Wang and Bin Wang",
title = "Deconvolution Estimation in Measurement Error Models:
The {R} Package \pkg{decon}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "10",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-21; Accepted 2010-11-04",
xxtitle = "Deconvolution Estimation in Measurement Error Models:
The R Package decon",
}
@Article{Simard:2011:CTS,
author = "Richard Simard and Pierre L'Ecuyer",
title = "Computing the Two-Sided {Kolmogorov--Smirnov}
Distribution",
journal = j-J-STAT-SOFT,
volume = "39",
number = "11",
pages = "1--18",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v39/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-17; Accepted 2010-12-13",
xxtitle = "Computing the Two-Sided Kolmogorov-Smirnov
Distribution",
}
@Article{DeBoeck:2011:EIR,
author = "Paul {De Boeck} and Marjan Bakker and Robert Zwitser
and Michel Nivard and Abe Hofman and Francis Tuerlinckx
and Ivailo Partchev",
title = "The Estimation of Item Response Models with the
\pkg{lmer} Function from the \pkg{lme4} Package in
{R}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "12",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-01; Accepted 2010-12-13",
xxtitle = "The Estimation of Item Response Models with the lmer
Function from the lme4 Package in R",
}
@Article{Molas:2011:HGL,
author = "Marek Molas and Emmanuel Lesaffre",
title = "Hierarchical Generalized Linear Models: The {R}
Package \pkg{HGLMMM}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "13",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v039.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-03; Accepted 2010-12-06",
xxtitle = "Hierarchical Generalized Linear Models: The R Package
{HGLMMM}",
}
@Article{Eddelbuettel:2011:BRB,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{R in a Nutshell}}}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "BR-1",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-04; Accepted 2011-04-04",
}
@Article{Evans:2011:BRB,
author = "Gary Evans",
title = "Book Review: {{\booktitle{Exploratory Multivariate
Analysis by Example Using R}}}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "BR-2",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-20; Accepted 2011-04-20",
}
@Article{Howard:2011:BRB,
author = "James P. Howard",
title = "Book Review: {{\booktitle{R Cookbook}}}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "BR-3",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-27; Accepted 2011-04-27",
}
@Article{Wickham:2011:SAC,
author = "Hadley Wickham",
title = "The Split-Apply-Combine Strategy for Data Analysis",
journal = j-J-STAT-SOFT,
volume = "40",
number = "1",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v40/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-24; Accepted 2010-12-27",
xxtitle = "The Split-Apply-Combine Strategy for Data Analysis",
}
@Article{Wickham:2011:TRP,
author = "Hadley Wickham and Dianne Cook and Heike Hofmann and
Andreas Buja",
title = "\pkg{tourr}: An {R} Package for Exploring Multivariate
Data with Projections",
journal = j-J-STAT-SOFT,
volume = "40",
number = "2",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-31; Accepted 2010-10-07",
xxtitle = "tourr: An R Package for Exploring Multivariate Data
with Projections",
}
@Article{Grolemund:2011:DTM,
author = "Garrett Grolemund and Hadley Wickham",
title = "Dates and Times Made Easy with \pkg{lubridate}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "3",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v40/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-23; Accepted 2010-11-29",
xxtitle = "Dates and Times Made Easy with lubridate",
}
@Article{Gabadinho:2011:AVS,
author = "Alexis Gabadinho and Gilbert Ritschard and Nicolas S.
M{\"u}ller and Matthias Studer",
title = "Analyzing and Visualizing State Sequences in {R} with
\pkg{TraMineR}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "4",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-12; Accepted 2011-01-03",
xxtitle = "Analyzing and Visualizing State Sequences in R with
{TraMineR}",
}
@Article{Jara:2011:DBS,
author = "Alejandro Jara and Timothy E. Hanson and Fernando A.
Quintana and Peter M{\"u}ller and Gary L. Rosner",
title = "\pkg{DPpackage}: {Bayesian} Semi- and Nonparametric
Modeling in {R}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "5",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-10-28; Accepted 2010-12-27",
xxtitle = "{DPpackage}: Bayesian Semi- and Nonparametric Modeling
in R",
}
@Article{Mullen:2011:DRP,
author = "Katharine M. Mullen and David Ardia and David L. Gil
and Donald Windover and James Cline",
title = "\pkg{DEoptim}: An {R} Package for Global Optimization
by Differential Evolution",
journal = j-J-STAT-SOFT,
volume = "40",
number = "6",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-27; Accepted 2011-02-04",
xxtitle = "{DEoptim}: An R Package for Global Optimization by
Differential Evolution",
}
@Article{Taylor:2011:RPW,
author = "Julian Taylor and Arunas Verbyla",
title = "{R} Package wgaim: {QTL} Analysis in Bi-Parental
Populations Using Linear Mixed Models",
journal = j-J-STAT-SOFT,
volume = "40",
number = "7",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-13; Accepted 2011-02-25",
xxtitle = "R Package wgaim: {QTL} Analysis in Bi-Parental
Populations Using Linear Mixed Models",
}
@Article{Eddelbuettel:2011:RSR,
author = "Dirk Eddelbuettel and Romain Fran{\c{c}}ois",
title = "\pkg{Rcpp}: Seamless {R} and {C++} Integration",
journal = j-J-STAT-SOFT,
volume = "40",
number = "8",
pages = "1--18",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-11-15; Accepted 2011-03-21",
}
@Article{Wang:2011:SRP,
author = "Ji-Ping Wang",
title = "{SPECIES}: An {R} Package for Species Richness
Estimation",
journal = j-J-STAT-SOFT,
volume = "40",
number = "9",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-11; Accepted 2011-03-27",
xxtitle = "{SPECIES}: An R Package for Species Richness
Estimation",
}
@Article{Culp:2011:SSS,
author = "Mark Culp",
title = "\pkg{spa}: Semi-Supervised Semi-Parametric Graph-Based
Estimation in {R}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "10",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-23; Accepted 2010-01-11",
xxtitle = "spa: A Semi-Supervised R Package for Semi-Parametric
Graph-Based Estimation",
}
@Article{Zarraga:2011:SAP,
author = "Amaya Z{\'a}rraga and Beatriz Goitisolo",
title = "Simultaneous Analysis in {S-PLUS}: The \pkg{SimultAn}
Package",
journal = j-J-STAT-SOFT,
volume = "40",
number = "11",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-22; Accepted 2011-04-13",
xxtitle = "Simultaneous Analysis in S-{PLUS}: The {SimultAn}
Package",
}
@Article{Scharpf:2011:URP,
author = "Robert B. Scharpf and Rafael A. Irizarry and Matthew
E. Ritchie and Benilton Carvalho and Ingo Ruczinski",
title = "Using the {R} Package \pkg{crlmm} for Genotyping and
Copy Number Estimation",
journal = j-J-STAT-SOFT,
volume = "40",
number = "12",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-09; Accepted 2011-04-18",
xxtitle = "Using the R Package crlmm for Genotyping and Copy
Number Estimation",
}
@Article{Grun:2011:PTR,
author = "Bettina Gr{\"u}n and Kurt Hornik",
title = "\pkg{topicmodels}: An {R} Package for Fitting Topic
Models",
journal = j-J-STAT-SOFT,
volume = "40",
number = "13",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-23; Accepted 2011-04-26",
xxtitle = "topicmodels: An R Package for Fitting Topic Models",
}
@Article{Causeur:2011:FAM,
author = "David Causeur and Chloe Friguet and Magalie
Houee-Bigot and Maela Kloareg",
title = "Factor Analysis for Multiple Testing ({FAMT}): An {R}
Package for Large-Scale Significance Testing under
Dependence",
journal = j-J-STAT-SOFT,
volume = "40",
number = "14",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v040.i14",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-09; Accepted 2011-04-01",
xxtitle = "Factor Analysis for Multiple Testing ( {FAMT} ): An R
Package for Large-Scale Significance Testing under
Dependence",
}
@Article{Commandeur:2011:SSS,
author = "Jacques J. F. Commandeur and Siem Jan Koopman and
Marius Ooms",
title = "Statistical Software for State Space Methods",
journal = j-J-STAT-SOFT,
volume = "41",
number = "1",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-22; Accepted 2010-12-20",
xxtitle = "Statistical Software for State Space Methods",
}
@Article{Mendelssohn:2011:SSS,
author = "Roy Mendelssohn",
title = "The {STAMP} Software for State Space Models",
journal = j-J-STAT-SOFT,
volume = "41",
number = "2",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-15; Accepted 2010-12-20",
xxtitle = "The {STAMP} Software for State Space Models",
}
@Article{Pelagatti:2011:SSM,
author = "Matteo M. Pelagatti",
title = "State Space Methods in \pkg{Ox\slash SsfPack}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "3",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-15; Accepted 2010-11-11",
xxtitle = "State Space Methods in Ox / {SsfPack}",
}
@Article{Petris:2011:SSM,
author = "Giovanni Petris and Sonia Petrone",
title = "State Space Models in {R}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "4",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v41/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-26; Accepted 2010-11-10",
xxtitle = "State Space Models in R",
}
@Article{Zivot:2011:SSM,
author = "Eric W. Zivot",
title = "State Space Modeling Using \pkg{SsfPack} in
{S+FinMetrics 3.0}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "5",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-25; Accepted 2010-11-18",
xxtitle = "State Space Modeling Using {SsfPack} in
S$\mathplus${FinMetrics} 3.0",
}
@Article{Peng:2011:SSM,
author = "Jyh-Ying Peng and John A. D. Aston",
title = "The State Space Models Toolbox for {MATLAB}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "6",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib",
URL = "http://www.jstatsoft.org/v41/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-18; Accepted 2010-11-17",
xxtitle = "The State Space Models Toolbox for {MATLAB}",
}
@Article{Bell:2011:RFP,
author = "William R. Bell",
title = "\pkg{REGCMPNT} --- a {Fortran} Program for Regression
Models with {ARIMA} Component Errors",
journal = j-J-STAT-SOFT,
volume = "41",
number = "7",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-04; Accepted 2010-11-26",
xxtitle = "{REGCMPNT} - A Fortran Program for Regression Models
with {ARIMA} Component Errors",
}
@Article{VandenBossche:2011:FSS,
author = "Filip A. M. {Van den Bossche}",
title = "Fitting State Space Models with \pkg{EViews}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "8",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-07; Accepted 2010-12-08",
xxtitle = "Fitting State Space Models with {EViews}",
}
@Article{Doan:2011:SSM,
author = "Thomas Doan",
title = "State Space Methods in \pkg{RATS}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "9",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-01; Accepted 2010-12-08",
xxtitle = "State Space Methods in {RATS}",
}
@Article{Drukker:2011:SSM,
author = "David M. Drukker and Richard B. Gates",
title = "State Space Methods in \pkg{Stata}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "10",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-15; Accepted 2010-09-29",
xxtitle = "State Space Methods in Stata",
}
@Article{Lucchetti:2011:SSM,
author = "Riccardo Lucchetti",
title = "State Space Methods in \pkg{gretl}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "11",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-13; Accepted 2010-12-01",
xxtitle = "State Space Methods in gretl",
}
@Article{Selukar:2011:SSM,
author = "Rajesh Selukar",
title = "State Space Modeling Using {SAS}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "12",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
URL = "http://www.jstatsoft.org/v41/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-23; Accepted 2010-08-17",
xxtitle = "State Space Modeling Using {SAS}",
}
@Article{Bos:2011:BAU,
author = "Charles S. Bos",
title = "A {Bayesian} Analysis of Unobserved Component Models
Using \pkg{Ox}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "13",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v041.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v41/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-29; Accepted 2010-11-29",
xxtitle = "A Bayesian Analysis of Unobserved Component Models
Using Ox",
}
@Article{Bailey:2011:CSI,
author = "Delia Bailey and Jonathan N. Katz",
title = "Code Snippet: Implementing Panel-Corrected Standard
Errors in {R}: The \pkg{pcse} Package",
journal = j-J-STAT-SOFT,
volume = "42",
number = "CS-1",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.c01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-22; Accepted 2007-10-16",
}
@Article{Altman:2011:ISV,
author = "Micah Altman and John Fox and Simon Jackman and Achim
Zeileis",
title = "An Introduction to the {Special Volume on 'Political
Methodology'}",
journal = j-J-STAT-SOFT,
volume = "42",
number = "1",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v42/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-05-21; Accepted 2011-05-21",
xxtitle = "An Introduction to the Special Volume on ``Political
Methodology''",
}
@Article{Altman:2011:NWL,
author = "Micah Altman and Simon Jackman",
title = "Nineteen Ways of Looking at Statistical Software",
journal = j-J-STAT-SOFT,
volume = "42",
number = "2",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v42/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-07; Accepted 2008-04-30",
xxtitle = "Nineteen Ways of Looking at Statistical Software",
}
@Article{Wand:2011:ASA,
author = "Jonathan Wand and Gary King and Olivia Lau",
title = "\pkg{anchors}: Software for Anchoring Vignette Data",
journal = j-J-STAT-SOFT,
volume = "42",
number = "3",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v42/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-09; Accepted 2008-04-27",
xxtitle = "anchors: Software for Anchoring Vignette Data",
}
@Article{Altman:2011:BBL,
author = "Micah Altman and Michael P. McDonald",
title = "{BARD}: Better Automated Redistricting",
journal = j-J-STAT-SOFT,
volume = "42",
number = "4",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v42/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-03-01; Accepted 2008-04-27",
xxtitle = "{BARD}: Better Automated Redistricting",
}
@Article{Imai:2011:ERP,
author = "Kosuke Imai and Ying Lu and Aaron Strauss",
title = "\pkg{eco}: {R} Package for Ecological Inference in $ 2
\times 2 $ Tables",
journal = j-J-STAT-SOFT,
volume = "42",
number = "5",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-06; Accepted 2007-06-18",
xxtitle = "eco: R Package for Ecological Inference in 2
{\texttimes} 2 Tables",
}
@Article{Ocana:2011:ISA,
author = "Francisco A. Oca{\~n}a and Pablo O{\~n}ate",
title = "{IndElec}: a Software for Analyzing Party Systems and
Electoral Systems",
journal = j-J-STAT-SOFT,
volume = "42",
number = "6",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i06",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v42/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-05; Accepted 2007-08-07",
xxtitle = "{IndElec}: A Software for Analyzing Party Systems and
Electoral Systems",
}
@Article{Sekhon:2011:MPS,
author = "Jasjeet S. Sekhon",
title = "Multivariate and Propensity Score Matching Software
with Automated Balance Optimization: The Matching
package for {R}",
journal = j-J-STAT-SOFT,
volume = "42",
number = "7",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i07",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-07; Accepted 2007-06-16",
xxtitle = "Multivariate and Propensity Score Matching Software
with Automated Balance Optimization: The Matching
Package for R",
}
@Article{Ho:2011:MNP,
author = "Daniel E. Ho and Kosuke Imai and Gary King and
Elizabeth A. Stuart",
title = "{MatchIt}: Nonparametric Preprocessing for Parametric
Causal Inference",
journal = j-J-STAT-SOFT,
volume = "42",
number = "8",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i08",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v42/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-28; Accepted 2008-01-17",
xxtitle = "{MatchIt}: Nonparametric Preprocessing for Parametric
Causal Inference",
}
@Article{Martin:2011:MMC,
author = "Andrew D. Martin and Kevin M. Quinn and Jong Hee
Park",
title = "{MCMCpack}: {Markov} Chain {Monte Carlo} in {R}",
journal = j-J-STAT-SOFT,
volume = "42",
number = "9",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i09",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-15; Accepted 2007-11-24",
xxtitle = "{MCMCpack}: Markov Chain Monte Carlo in R",
}
@Article{Linzer:2011:PRP,
author = "Drew A. Linzer and Jeffrey B. Lewis",
title = "\pkg{poLCA}: An {R} Package for Polytomous Variable
Latent Class Analysis",
journal = j-J-STAT-SOFT,
volume = "42",
number = "10",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i10",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-15; Accepted 2007-08-02",
xxtitle = "{poLCA}: An R Package for Polytomous Variable Latent
Class Analysis",
}
@Article{Mebane:2011:GOU,
author = "Walter R. {Mebane, Jr.} and Jasjeet S. Sekhon",
title = "Genetic Optimization Using Derivatives: The
\pkg{rgenoud} Package for {R}",
journal = j-J-STAT-SOFT,
volume = "42",
number = "11",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i11",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-11; Accepted 2007-11-21",
xxtitle = "Genetic Optimization Using Derivatives: The rgenoud
Package for R",
}
@Article{Pemstein:2011:SSL,
author = "Daniel Pemstein and Kevin M. Quinn and Andrew D.
Martin",
title = "The {Scythe Statistical Library}: An Open Source {C++}
Library for Statistical Computation",
journal = j-J-STAT-SOFT,
volume = "42",
number = "12",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i12",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v42/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-15; Accepted 2007-08-15",
xxtitle = "The Scythe Statistical Library: An Open Source
C$\mathplus\mathplus$ Library for Statistical
Computation",
}
@Article{Abadie:2011:SRP,
author = "Alberto Abadie and Alexis Diamond and Jens
Hainmueller",
title = "{Synth}: An {R} Package for Synthetic Control Methods
in Comparative Case Studies",
journal = j-J-STAT-SOFT,
volume = "42",
number = "13",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i13",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-01; Accepted 2007-12-17",
xxtitle = "Synth: An R Package for Synthetic Control Methods in
Comparative Case Studies",
}
@Article{Poole:2011:SRC,
author = "Keith Poole and Jeffrey Lewis and James Lo and Royce
Carroll",
title = "Scaling Roll Call Votes with \pkg{wnominate} in {R}",
journal = j-J-STAT-SOFT,
volume = "42",
number = "14",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v042.i14",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-01; Accepted 2007-08-07",
xxtitle = "Scaling Roll Call Votes with wnominate in R",
}
@Article{Shentu:2011:BRB,
author = "Yue Shentu",
title = "Book Review: {{\booktitle{Clinical Trial Data Analysis
Using R}}}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "BR-1",
pages = "??--??",
month = jul,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v043.b01",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-07-18; Accepted 2011-07-18",
}
@Article{Demirtas:2011:BRB,
author = "Hakan Demirtas",
title = "Book Review: {{\booktitle{Statistical Simulation:
Power Method Polynomials and Other Transformations}}}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "BR-2",
pages = "??--??",
month = sep,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v043.b02",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib",
URL = "http://www.jstatsoft.org/v43/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-11; Accepted 2011-09-11",
}
@Article{Cook:2011:BRB,
author = "Dianne Cook and Heike Hofmann",
title = "Book Review: {{\booktitle{R Graphics}} (2nd
Edition)}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "BR-3",
pages = "??--??",
month = sep,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v043.b03",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-13; Accepted 2011-09-13",
}
@Article{Sanchez:2011:BRB,
author = "Juana Sanchez",
title = "Book Review: {{\booktitle{Hidden Markov Models for
Time Series --- An Introduction Using R}}}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "BR-4",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v043.b04",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-10-04; Accepted 2011-10-04",
}
@Article{Gromping:2011:BRB,
author = "Ulrike Gr{\"o}mping",
title = "Book Review: {{\booktitle{Optimal Experimental Design
with R}}}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "BR-5",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
DOI = "https://doi.org/10.18637/jss.v043.b05",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = 
