Last update:
Sat Mar 16 11:49:37 MDT 2024
George Cybenko From the Editor-in-Chief: Computational
Culture Shock . . . . . . . . . . . . . 1--3
Ken Haas CSE in Industry: Where the Rubber Meets
the Road . . . . . . . . . . . . . . . . 4--6
Paul F. Dubois Scientific Programming: Ten Good
Practices in Scientific Programming . . 7--11
Jim X. Chen and
Xiaodong Fu Visualization Corner: Integrating
Physics-Based Computing & Visualization:
Modeling Dust Behavior . . . . . . . . . 12--16
Alex F. Burr and
Bruce A. Craig and
Choong-Geun Chung and
Tak-Shing Harry So and
Terry J. Deveau and
Donald L. Shirer Technology News and Reviews: Programs
for Statistics and Data Analysis . . . . 17--21
Carl J. Beckmann and
George Cybenko Guest Editors' Introduction: Computation
in Communication . . . . . . . . . . . . 22--22
Carl J. Beckmann and
Donald D. McManus and
George Cybenko Horizons in Scientific Networking and
Computing . . . . . . . . . . . . . . . 23--30
Marc Kimpe and
Harry Leib and
Olivier Maquelin and
Ted H. Szymanski Fast Computational Techniques for Indoor
Radio Channel Estimation . . . . . . . . 31--41
James H. Cowie and
David M. Nicol and
Andy T. Ogielski Modeling the Global Internet . . . . . . 42--50
Dennis Healey and
Tim Olson and
Ulf Österberg Wavelets in Optical Communications . . . 51--57
Martin W. Lo Satellite-Constellation Design . . . . . 58--67
David J. Kuck and
D. C. Rapaport and
Hans J. Herrmann and
H. Eugene Stanley and
Dietrich Stauffer How Computation Affects Science and
Engineering: 5 Essays . . . . . . . . . 68--80
Bruce Segee Book & Web Reviews: Methods in Neuronal
Modeling: From Ions to Networks, 2nd
edition . . . . . . . . . . . . . . . . 81--81
Francis Sullivan and
William J. Thompson Computing Prescriptions: By Way of
Introduction . . . . . . . . . . . . . . 82--83
Grigori V. Kapoustin and
Jian Ma Computing Simulations: Modeling
Adsorption-Desorption Processes in
Porous Media . . . . . . . . . . . . . . 84--91
Tom Compton Web Mechanics: MathScript, Internet
Connection to Mathematica . . . . . . . 92--95
Norris Parker Smith Interfaces: The Ultimate Merger:
Microsoft and the Postal Service . . . . 96--97
Francis Sullivan From the Editor: Recycling Center . . . 1--1
Donald L. Shirer Technology News & Reviews: HiQ Gets a
High Five for Mathematical Analysis . . 4--5
David L. Lewin Trends: Totally Rad: Planning Radiation
Therapy in 3D . . . . . . . . . . . . . 6--9
Timothy C. Germann and
Peter S. Lomdahl Recent Advances in Large-Scale Atomistic
Materials Simulations . . . . . . . . . 10--11, 16
Toshiyuki Fukushige and
Piet Hut and
Junichiro Makino High-Performance Special-Purpose
Computers in Science . . . . . . . . . . 12--13, 16
John R. Rice A Perspective on Computational Science
in the 21st Century . . . . . . . . . . 14--16
Joel Tohline and
Greg L. Bryan Guest Editors' Introduction: Cosmology
and Computation . . . . . . . . . . . . 17--20
J. Richard Bond and
Robert G. Crittenden and
Andrew H. Jaffe and
Lloyd Knox Computing Challenges of the Cosmic
Microwave Background . . . . . . . . . . 21--35
Simon D. M. White and
Volker Springel Fitting the Universe on a Supercomputer 36--45
Greg L. Bryan Fluids in the Universe: Adaptive Mesh
Refinement in Cosmology . . . . . . . . 46--53
Alexander S. Szalay The Sloan Digital Sky Survey . . . . . . 54--62
Mark G. Gray and
Randy M. Roberts and
Tom M. Evans Scientific Programming: Shadow-Object
Interface between Fortran 95 and C++ . . 63--70
Isabel Beichl and
Francis Sullivan Computing Prescriptions: The Importance
of Importance Sampling . . . . . . . . . 71--73
Normand Mousseau and
Gerard T. Barkema Computer Simulations: Exploring
High-Dimensional Energy Landscapes . . . 74--80, 82
Nikolaos Aravas Book & Web Reviews: Finite Elements:
Theory, Fast Solvers, and Applications
in Solid Mechanics . . . . . . . . . . . 81--82
Jim X. Chen Visualization Corner: a Jump on
Visualization: The Bottoms-Up Approach 83--87
Daniel Frenkel and
Laura Golebiowski and
Renato Portugal Education: Computer Algebra Takes on the
Vibrating Membrane Problem . . . . . . . 88--93
Patricia Daukantas Conferences: SC98 Treats the Past as
Prologue to Computing's Future . . . . . 94--95, 97--97
Norris Parker Smith Interfaces: How the Y1K Problem May Have
Been Resolved in the Year 999 . . . . . 96--97
Rajiv Kalia From the Editors: Consilience through
Information Technology . . . . . . . . . 2--4
Joseph `Roy' North and
Martin Lo and
Gregory S. Vigneault Letters to the editor: You're off Your
Orbit; Internet Time: Why Switch for
Swatch? . . . . . . . . . . . . . . . . 5--5
Keri Schreiner Trends: Creativity is Key to Drug R&D . . 6--9
Kurt Binder and
Marcus Muller and
Friedericke Schmid How Simulations Clarify Complex Material
Phase Transitions . . . . . . . . . . . 10--12
Wolfgang Christian Educational Software and the Sisyphus
Effect . . . . . . . . . . . . . . . . . 13--15
Jill P. Mesirov and
Donna K. Slonim Guest Editor's Introduction:
Computational Biology . . . . . . . . . 16--17
Mark J. Daly The Computational Challenge of Linkage
Analysis: What Causes Diseases? . . . . 18--25
Charles DeLisi and
Sandor Vajda Computational Problems in Cell Biology 26--32
Gene Myers Whole-Genome DNA Sequencing . . . . . . 33--43
Lincoln D. Stein and
Jean Thierry-Mieg AceDB: a Genome Database Management
System . . . . . . . . . . . . . . . . . 44--52
D. E. Stevenson A Critical Look at Quality in
Large-Scale Simulations . . . . . . . . 53--63
Jerzy Karczmarczuk Scientific Programming: Scientific
Computation and Functional Programming 64--72
John T. Betts CSE in Industry: a Direct Approach to
Solving Optimal Control Problems . . . . 73--75
Eugene I. Butikov Education: Parametric Resonance . . . . 76--83
William J. Thompson Computing Prescriptions: Spheroidal Wave
Functions . . . . . . . . . . . . . . . 84--87
Norris Parker Smith Interfaces: Marketing Eau De Skunqoil:
Only on the Internet . . . . . . . . . . 88--89
George Cybenko From the Editors: The Intellectual
Property Lottery . . . . . . . . . . . . 4--4
Alex Kilpatrick Letters to the Editors: Internet Time:
Switch to Swatch? . . . . . . . . . . . 5--5
Alex F. Burr Technology News & Reviews: Mathcad 8: New
Features for a Popular Math Program . . 6--9
Tom Marchioro Interview: With Cleve Moler Putting Math
to Work . . . . . . . . . . . . . . . . 10--13
Michael Creutz Essays: Computers and the Particle
Theorist . . . . . . . . . . . . . . . . 14--15
Michael W. Berry Guest Editor's Introduction: Massive
Data Visualization . . . . . . . . . . . 16--17
William W. Hargrove and
Forrest M. Hoffman Using Multivariate Clustering to Define
Ecoregion Borders . . . . . . . . . . . 18--25
Andrew Booker and
Michelle Condliff and
Mark Greaves and
Frederick B. Holt and
Anne Kao and
Daniel J. Pierce and
Stephen Poteet and
Yuan-Jye Jason Wu Visualizing Text Data Sets . . . . . . . 26--35
Michael L. Norman and
John Shalf and
Stuart Levy and
Greg Daues Diving Deep: Data Management and
Visualization Strategies for Adaptive
Mesh Refinement Simulations . . . . . . 36--47
Hans G. Kaper and
Elizabeth Wiebel and
Sever Tipei Data Sonification and Sound
Visualization . . . . . . . . . . . . . 48--58
Isabel Beichl and
Francis Sullivan Computing Prescriptions: Pay Me Now or
Pay Me Later . . . . . . . . . . . . . . 59--62
Michael Thoresen Web Mechanics: \TeX to Web --- Fast and
Easy . . . . . . . . . . . . . . . . . . 63--65
Scott Haney and
James Crotinger Scientific Programming: How Templates
Enable High-Performance Scientific
Computing in C++ . . . . . . . . . . . . 66--72
Matthew C. Kuntz and
Olga Perkovic and
Karin A. Dahmen and
Bruce W. Roberts and
James P. Sethna Computer Simulations: Hysteresis,
Avalanches, and Noise . . . . . . . . . 73--81
Ying Zhu and
Jim X. Chen and
Shide Xiao and
Edward B. MacMahon Visualization Corner: $3$D Knee Modeling
and Biomechanical Simulation . . . . . . 82--87
Norris Parker Smith Interfaces: Y3K Prevails: Is the Great
Database Deleted Forever? . . . . . . . 88--89
Francis Sullivan From the Editors: Can a Numerical
Computation Prove Anything? . . . . . . 2--3
Douglas W. Muir and
William G. Harter and
Denis Donnelly and
Thomas L. Marchioro II Letters to the Editors: Internet Time
Redux; Educational Software Contest . . 4--9
David P. Landau Essays: Phase Transitions and Critical
Phenomena . . . . . . . . . . . . . . . 10--11
Nancy A. Forbes and
Laura F. Landweber Spotlight: Computer Science and the
Evolution of Genetic Information . . . . 12--15
David I. Lewin Trends: Cruising Digital Ships on
Electronic Seas . . . . . . . . . . . . 16--19
Priya Vashishta and
Aiichiro Nakano Guest Editors' Introduction: Dynamic
Fracture Analysis . . . . . . . . . . . 20--23
Krishnaswamy Ravi-chandar and
Wolfgang Knauss Processes Controlling Fast Fracture of
Brittle Solids . . . . . . . . . . . . . 24--31
Elisabeth Bouchaud and
Florin Paun Fracture and Damage at a Microstructural
Scale . . . . . . . . . . . . . . . . . 32--38
Aiichiro Nakano and
Rajiv K. Kalia and
Priya Vashishta Scalable Molecular-Dynamics,
Visualization, and Data-Management
Algorithms for Material Simulations . . 39--47
Michael Marder Molecular Dynamic of Cracks . . . . . . 48--55
Priya Vashishta and
Rajiv K. Kalia and
Aiichori Nakano Large-Scale Atomistic Simulations of
Dynamic Fracture . . . . . . . . . . . . 56--65
Paul F. Dubois and
T.-Y. Yang Scientific Programming: Extending Python
with Fortran . . . . . . . . . . . . . . 66--73
Enrique Canessa Web Mechanics: Enabling Synchronous Math
Discussions on the Web . . . . . . . . . 74--76
Seymour Trester Education: Computer-Simulated Fresnel
Diffraction Using the Fourier Transform 77--83
William J. Thompson Computing Prescriptions: Don't Subtract
the Background . . . . . . . . . . . . . 84--88
Dirk Helbling and
Martin Treiber Computer Simulations: Numerical
Simulation of Macroscopic Traffic
Equations . . . . . . . . . . . . . . . 89--99
Mark F. Gyure CiSE in Industry: Bridging Time and
Length Scales in Semiconductor Process
Model Development . . . . . . . . . . . 100--103
Norris Parker Smith Interfaces: Terms of Life Defined in
Agreement with Fate.Com --- a Fantasy 104--105
George Cybenko From the Editor: Infrastructure
Immunology . . . . . . . . . . . . . . . 1--3
Nancy A. Forbes Spotlight: Japanese Reforms Foster
Innovative Technology . . . . . . . . . 4--9
Robert Co\"\isson and
Luigi Cristofolini Technology News and Reviews: Real-Time
Toolbox Provides Convenient Lab-Data
Acquisition . . . . . . . . . . . . . . 10--13
Leo Joskowicz and
Elisha Sacks Computer-Aided Mechanical Design Using
Configuration Spaces . . . . . . . . . . 14--21
Kevin Northover and
Andrew W. Lo Guest Editors' Introduction:
Computational Finance . . . . . . . . . 22--23
David Shaw Interview: At the Intersection of
Technology and Finance . . . . . . . . . 24--25
J. Doyne Farmer Physicists Attempt to Scale the Ivory
Towers of Finance . . . . . . . . . . . 26--39
Dimitris Bertsimas and
Paul Hummell and
Andrew W. Lo Optimal Control of Execution Costs for
Portfolios . . . . . . . . . . . . . . . 40--53
James Gatheral and
Yonathan Epelbaum and
Jining Han and
Kishor Laud and
Olga Lubovitsky and
Elaine Kant and
Curt Randall Implementing Option-Pricing Models Using
Software Synthesis . . . . . . . . . . . 54--64
Denis Donnelly Education: Winners of the CiSE Software
Contest . . . . . . . . . . . . . . . . 65--69
Jeremy G. Siek and
Andrew Lumsdaine Scientific Programming: The Matrix
Template Library: Generic Components for
High-performance Scientific Computing 70--78
N. Sanjay Rebello Web Mechanics: How to Distribute Your
Software over the Web . . . . . . . . . 79--81
Jim X. Chen and
Ophir Frieder Visualization Corner: Applications of
Computer Graphics Software Tools . . . . 82--87
Anonymous 1999 Annual Index . . . . . . . . . . . 88--91
James S. Ball Computing Prescriptions: Orthogonal
Polynomials, Gaussian Quadratures, and
PDEs . . . . . . . . . . . . . . . . . . 92--95
Norris Parker Smith Interfaces: The Eureka Anomaly . . . . . 96--96, 95--95
Francis Sullivan From the Editors: The Joy of Algorithms 2--2
Donald L. Shirer Technology News & Reviews: Multimedia cT
Language Is Now Free . . . . . . . . . . 3--5
David I. Lewin Focus: Freedom of Information . . . . . 6--9
J. S. Shang and
Marcus Wagner and
Yi Pan and
Douglas C. Blake Strategies for Adopting FVTD on
Multicomputers . . . . . . . . . . . . . 10--21
Jack Dongarra and
Francis Sullivan Guest Editors' Introduction: The Top 10
Algorithms . . . . . . . . . . . . . . . 22--23
David H. Bailey Integer Relation Detection . . . . . . . 24--28
John C. Nash The (Dantzig) Simplex Method for Linear
Programming . . . . . . . . . . . . . . 29--31
Henk A. van der Vorst Krylov Subspace Iteration . . . . . . . 32--37
Beresford N. Parlett The $ Q R $ Algorithm . . . . . . . . . 38--42
Joseph JaJa A Perspective on Quicksort . . . . . . . 43--49
G. W. Stewart The Decompositional Approach to Matrix
Computation . . . . . . . . . . . . . . 50--59
Daniel N. Rockmore The FFT: An Algorithm the Whole Family
Can Use . . . . . . . . . . . . . . . . 60--64
Isabel Beichl and
Francis Sullivan The Metropolis Algorithm . . . . . . . . 65--69
David Padua The Fortran I Compiler . . . . . . . . . 70--75
John Board and
Klaus Schulten The Fast Multipole Algorithm . . . . . . 76--79
Mark Newman Computer Simulations: Simple Models of
Evolution and Extinction . . . . . . . . 80--86
Chuck Bennett Web Mechanics: Multipart Homework
Problems over the Web . . . . . . . . . 87--91, 95--95
Julian V. Noble Computing Prescriptions: Gauss--Legendre
Principal Value Integration . . . . . . 92--95
Norris Parker Smith Interfaces: Mr. & Mrs. Average America 96--97
George Cybenko From the Editors: The Death of
Disciplines . . . . . . . . . . . . . . 2--3
Anonymous Marketing Survey . . . . . . . . . . . . 4--5
Donald L. Shirer Technology News & Reviews: Basic: The
Little Language That Wouldn't Die . . . 6--10
Raquell Holmes and
Roscoe Giles Essay: Minority Participation in
Computational Science . . . . . . . . . 11--13
Merrell Patrick and
Robert Voigt Guest Editors' Introduction: Advancing
Simulation Science and Engineering at
Disciplinary Interfaces . . . . . . . . 14--16
Gil Weigand and
Paul Messina Interview: Sea Changes in Computational
Power: Testing Our Metal . . . . . . . . 17--20
Michael T. Heath and
William A. Dick Virtual Prototyping of Solid Propellant
Rockets . . . . . . . . . . . . . . . . 21--32
Robert Rosner and
Alan Calder and
Jonathan Dursi and
Bruce Fryxell and
Donald Q. Lamb and
Jens C. Niemeyer and
Kevin Olson and
Paul Ricker and
Frank X. Timmes and
James W. Truran and
Henry Tufo and
Yuan-Nan Young and
Michael Zingale and
Ewing Lusk and
Rick Stevens Flash Code: Studying Astrophysical
Thermonuclear Flashes . . . . . . . . . 33--41
Michael Aivazis and
William A. Goddard and
Dan Meiron and
Michael Ortiz and
James Pool and
Joseph Shepherd A Virtual Test Facility for Simulating
the Dynamic Response of Materials . . . 42--53
William C. Reynolds and
Massimiliano Fatica Stanford Center for Integrated
Turbulence Simulations . . . . . . . . . 54--63
Thomas C. Henderson and
Patrick A. McMurtry and
Philip J. Smith and
Gregory A. Voth and
Charles A. Wight and
David F. Pershing Simulating Accidental Fires and
Explosions . . . . . . . . . . . . . . . 64--76
Dona Crawford and
Donald McCoy and
David Nowak Our Perspective on the Alliance
Program's Benefits . . . . . . . . . . . 77--79
James C. Bean CSE in Industry: a Multiple-Choice
Genetic Algorithm for a Nonlinear
Cutting Stock Problem . . . . . . . . . 80--83
Stanley P. Lipshitz and
Renato Portugal and
John Vanderkooy Scientific Programming: Using Computer
Algebra to Explore Sound-Wave
Propagation in Spherical Cavities . . . 84--94
Jim Gubernatis and
Naomichi Hatano Computer Simulations: The Multicanonical
Monte Carlo Method . . . . . . . . . . . 95--103
Daniel Bilar Book and Web Reviews: To See the World
in a Grain of Sand . . . . . . . . . . . 104--104
Francis Sullivan From the Editors: So Now They Tell Us! 2--3
Jun Makino and
John Board and
Klaus Schulten and
Peter Borcherds and
Rubin D. Orduz Z. Letters to the Editors: ``The Fast
Multipole Algorithm'' and ``The Top 10
Algorithms'' . . . . . . . . . . . . . . 4--5
David I. Lewin Focus: Teaching Techies to Become
Entrepreneurs . . . . . . . . . . . . . 6--9
Donald L. Shirer Technology News & Reviews: Products to
Simplify Your Life . . . . . . . . . . . 10--11
Carl Taswell The What, How, and Why of Wavelet
Shrinkage Denoising . . . . . . . . . . 12--19
John B. Rundle Guest Editor's Introduction:
Computational Earth System Science . . . 20--21
Louis Moresi and
Michael Gurnis and
Shijie Zhong Plate Tectonics and Convection in the
Earth's Mantle: Toward a Numerical
Simulation . . . . . . . . . . . . . . . 22--33
Eric F. Preston and
Jorge S. SáMartins and
John B. Rundle and
Marian Anghel and
William Klein Models of Earthquake Faults with
Long-Range Stress Transfer . . . . . . . 34--41
Bruce D. Malamud and
Donald L. Turcotte Cellular-Automata Models Applied to
Natural Hazards . . . . . . . . . . . . 42--51
Howard A. Zebker Studying the Earth with Interferometric
Radar . . . . . . . . . . . . . . . . . 52--60
Gary A. Glatzmaier and
Thomas Clune Computational Aspects of Geodynamo
Simulations . . . . . . . . . . . . . . 61--67
Marco Lanzagorta and
Robert Rosenberg and
Lawrence J. Rosenblum and
Eddy Y. Kuo Visualization Corner: Rapid Prototyping
of Virtual Environments . . . . . . . . 68--73
Michael Malak Web Mechanics: Adding Video to Your Web
Pages . . . . . . . . . . . . . . . . . 74--77
Burkhard D. Steinmacher-Burow Scientific Programming: Dividing the
Application Definition from the
Execution . . . . . . . . . . . . . . . 78--83
Isabel Beichl and
Francis Sullivan Computing Prescriptions: $ A = B $? . . 84--87
Maurice de Koning and
Wei Cai and
Alex Antonelli and
Sidney Yip Computer Simulations: Efficient
Free-Energy Calculations by the
Simulation of Nonequilibrium Processes 88--96
Norris Parker Smith Interfaces: The Totally Useless Things
Dot.com: Is It the Ultimate Future for
the Web? . . . . . . . . . . . . . . . . 97--97, 87--87
George Cybenk From the Editors: Who Wants More? . . . 3--3
Douglas Tougaw Technology News & Reviews: Sun PCi
Provides the Best of Two Worlds . . . . 4--8
Toby Burnett and
Chris Chaput and
Heather Arrighi and
Jay Norris and
Daniel J. Suson Simulating the Glast Satellite with
Gismo . . . . . . . . . . . . . . . . . 9--18
Andreas Stathopoulos and
Serdar Ögüt and
Yousef Saad and
James Chelikowsky and
Hanchul Kim Parallel Methods and Tools for
Predicting Material Properties . . . . . 19--33
Kevin Amaratunga A Wavelet-Based Approach for Compressing
Kernel Data in Large-Scale Simulations
of $3$D Integral Problems . . . . . . . 34--45
Carlos Alberola and
Lorenzo Tardón and
Juan Ruiz-Alzola Graphical Models for Problem Solving . . 46--57
D. Stott Parker and
Brad Pierce and
Paul R. Eggert Monte Carlo Arithmetic: How to Gamble
with Floating Point and Win . . . . . . 58--68
Steven H. Kleinstein and
Philip E. Seiden Computer Simulations: Simulating the
Immune System . . . . . . . . . . . . . 69--77
Kristi D. Concannon and
William J. Thompson Computing Prescriptions: Regression
Lines: More than Meets the Eye . . . . . 78--81
Paul Dubois Scientific Programming: Extending Maple
with Compiled Routines . . . . . . . . . 82--86
Hermann Härtel and
Michael Lüdke Education: $3$D Simulations of
Interacting Particles . . . . . . . . . 87--90
Richard R. Silbar Web Mechanics: Animating Equations on
the Web . . . . . . . . . . . . . . . . 91--95
Susan R. McKay Book and Web Reviews: Mathematical
Models . . . . . . . . . . . . . . . . . 96--96
Francis Sullivan From the Editors: Simplicity and
Complexity . . . . . . . . . . . . . . . 4--5
Julian V. Noble Technology News & Reviews: Adventures in
the Forth Dimension . . . . . . . . . . 6--10
David I. Lewin Focus: Do Databases Need Protection?
From Whom? . . . . . . . . . . . . . . . 11--13
Martin S. Weinhous and
Joseph M. Rosen Guest Editors' Introduction: Computing
in Medicine . . . . . . . . . . . . . . 14--17
Idith Haber and
Dimitris N. Metaxas and
Leon Axel Using Tagged MRI to Reconstruct a $3$D
Heartbeat . . . . . . . . . . . . . . . 18--30
Christine L. Hartmann Siantar and
Dewey Garrett Photon-Beam Radiation Therapy and Monte
Carlo . . . . . . . . . . . . . . . . . 31--38
Maryellen L. Giger Computer-Aided Diagnosis of Breast
Lesions in Medical Images . . . . . . . 39--45
Scott L. Delp and
J. Peter Loan A Computational Framework for Simulating
and Analyzing Human and Animal Movement 46--55
David Scherer and
Paul Dubois and
Bruce Sherwood Scientific Programming: VPython: $3$D
Interactive Scientific Graphics for
Students . . . . . . . . . . . . . . . . 56--62
Isabel Beichl and
Francis Sullivan Computing Prescriptions: Determining the
Derminant . . . . . . . . . . . . . . . 63--66
Jim X. Chen and
Yonggao Yang Visualization Corner: $3$D Graphics
Formats and Conversions . . . . . . . . 67--73
Osman Yasar and
Kulathur S. Rajasethupathy and
Robert E. Tuzun and
R. Alan McCoy and
Joseph Harkin Education: a New Perspective on
Computational Science Education . . . . 74--79
Debashish Chowdhury and
Ludger Santen and
Andres Schadschneider Computer Simulations: Simulation of
Vehicular Traffic: a Statistical Physics
Perspective . . . . . . . . . . . . . . 80--87
Norris Parker Smith Interfaces: The Long Way from 2.5 Gen to
the Third Generation . . . . . . . . . . 88--89
George Cybenko From the Editors: The New Millennium
Challenge . . . . . . . . . . . . . . . 4
Donald L. Shirer Technology News & Reviews: An Olio of
Almost Obscure Programmers' Products . . 6
Ren-Jye Yang and
Alexander Akkerman and
Daniel F. Anderson and
Omar M. Faruque and
Lei Gu CSE in Industry: Robustness Optimization
for Vehicular Crash Simulations . . . . 8--13
Robert Drach Scientific Programming: Serving
Scientific Data over the Web . . . . . . 14--18
Donald G. Truhlar and
Vincent McKoy Guest Editors' Introduction:
Computational Chemistry . . . . . . . . 19--21
Michele Parrinello Simulating Complex Systems without
Adjustable Parameters . . . . . . . . . 22--27
Tom K. Woo and
Serguei Patchkovskii and
Tom Ziegler Atomic Scale Modeling of Polymerization
Catalysts . . . . . . . . . . . . . . . 28--37
Tamar Schlick and
Daniel A. Beard and
Jing Huang and
Daniel A. Strahs and
Xiaoliang Qian Computational Challenges in Simulating
Large DNA over Long Times . . . . . . . 38--51
Siddharth Dasgupta The Role and Challenges of Computational
Chemistry in Industrial Problems . . . . 52--60
Matthias Schwab and
Martin Karrenbach and
Jon Claerbout Making Scientific Computations
Reproducible . . . . . . . . . . . . . . 61--67
Edward J. Wegman Visualization Corner: Affordable
Environments for $3$D Collaborative Data
Visualization . . . . . . . . . . . . . 68--72, 74
David P. Feldman Book and Web Reviews: Monte Carlo
Methods . . . . . . . . . . . . . . . . 73
Stefan Boettcher Computer Simulations: Extremal
Optimization:Heuristics via
Coevolutionary Avalanches . . . . . . . 75--82
Nancy Forbes Focus: Biologically Inspired Computing 83--87
Panayotis A. Assimakopoulos Education: a Computer-Aided Introductory
Course in Electricity and Magnetism . . 88--93
Anonymous 2000 Annual Index . . . . . . . . . . . 94
William J. Thompson Computing Prescriptions: Visualizing
Transcendental Functions . . . . . . . . 98--103
Norris Parker Smith Interfaces: Janus: The Ideal Patron for
Computing . . . . . . . . . . . . . . . 104
Francis Sullivan From the Editors: Onward and Upward . . 2
Nancy Forbes Focus: Evolution on a Chip: Evolvable
Hardware Aims to Optimize Circuit Design 6--10
Douglas Tougaw Technology News & Reviews: Agilent's
Mixed-Signal Oscilloscopes Provide
Enhanced Measurement Capabilities . . . 11--14
Stephen A. Langer and
Edwin R. Fuller, Jr. and
W. Craig Carter OOF: An Image-Based Finite-Element
Analysis of Material Microstructures . . 15--23
Delores M. Etter and
Charles J. Holland and
John Grosh Export Control of High-Performance
Computing: Analysis and Alternatives . . 24--31
Jack J. Dongarra and
David W. Walker The Quest for Petascale Computing . . . 32--39
George Cybenko and
Francis Sullivan Guest Editors' Introduction: Tomorrow's
Hardest Problems . . . . . . . . . . . . 40--50
Anthony Guttmann Enumerations in Statistical Mechanics
and Combinatorics . . . . . . . . . . . 42--47
Jonathan M. Borwein and
Peter B. Borwein Challenges in Mathematical Computing . . 48--53
Martin B. Haugh and
Andrew W. Lo Computational Challenges in Portfolio
Management . . . . . . . . . . . . . . . 54--59
Dianne P. O'Leary and
Scott T. Weidman Conference Report: The Interface between
Computer Science and the Mathematical
Sciences . . . . . . . . . . . . . . . . 60--65
Regina Hannemann and
Jens Hannemann and
Michael Zellerhoff and
Ludger Klinkenbusch Scientific Programming: Scientific
Programming in Field Theory, Part 1 . . 66--74
Geoffrey Fox Web Computing: Peer-to-Peer Networks . . 75--77
William J. Thompson Computing Prescriptions: Poisson
Distributions . . . . . . . . . . . . . 78--82
André Jaun and
Johan Hedin and
Thomas Johnson Education: Teaching Computational
Methods for Partial Differential
Equations Using the Web . . . . . . . . 83--85
Mark A. Peterson and
Yanir Rubinstein Computer Simulations: Turbulence on a
Desktop . . . . . . . . . . . . . . . . 86--94
George Cybenko Book and Web Reviews: Machine Learning 95--96
Jim X. Chen and
Yonggao Yang and
Xusheng Wang Visualization Corner: Physics-Based
Modeling and Real-Time Simulation . . . 98--102
Norris Parker Smith Interfaces: The Crucial 0.1 Percent
Difference . . . . . . . . . . . . . . . 104
Francis Sullivan From the Editors: Threads and Surprises 3
David I. Lewin Focus: Searching for the Elusive Qubit 4--7
Donald L. Shirer Technology News & Reviews: LabView 6i
Adds Internet Features to Data
Acquisition Environment . . . . . . . . 8--11
Samuel T. Jones and
Scott E. Parker and
Charlson C. Kim Low-Cost High-Performance Scientific
Visualization . . . . . . . . . . . . . 12--17
Renate Dohmen and
Jakob Pichlmeier and
Max Petersen and
Frank Wagner and
Matthias Scheffler Parallel FP-LAPW for Distributed-Memory
Machines . . . . . . . . . . . . . . . . 18--29
Max Schaible Searching the Scientific Database
Literature for Guides to Experiment and
Theory . . . . . . . . . . . . . . . . . 30--39
Mark A. Ratner and
James R. Chelikowsky Guest Editors' Introduction:
Nanoscience, Nanotechnology, and
Modeling . . . . . . . . . . . . . . . . 40--41
Deepak Srivastava and
Madhu Menon and
Kyeongjae Cho Computational Nanotechnology with Carbon
Nanotubes and Fullerenes . . . . . . . . 42--55
Aiichiro Nakano and
Martina E. Bachlechner and
Rajiv K. Kalia and
Elefterios Lidorikis and
Priya Vashishta and
George Z. Voyiadjis and
Timothy J. Campbell and
Shuji Ogata and
Fuyucki Shimojo Multiscale Simulation of Nanosystems . . 56--66
K. Lance Kelly and
Anne A. Lazarides and
George C. Schatz Computational Electromagnetics of Metal
Nanoparticles and Their Aggregates . . . 67--73
Geoffrey Fox and
Dennis Gannon Grid Computing: Computational Grids . . 74--77
Jens Hannemann and
Regina Hannemann and
Michael Zellerhoff and
Ludger Klinkenbusch Scientific Programming: Scientific
Programming in Field Theory,Part 2 . . . 78--85
Timothy C. Black and
William J. Thompson Computing Prescriptions: Bayesian Data
Analysis . . . . . . . . . . . . . . . . 86--91
Wolfgang Windl and
Matthew Laudon and
Neil N. Carlson and
Murray S. Daw CSE in Industry: Predictive Process
Simulation and Stress-Mediated Diffusion
in Silicon . . . . . . . . . . . . . . . 92--95
Norris Parker Smith Interfaces: How Bubbles Pop\ldotsand
Could Pop Once More . . . . . . . . . . 96--97
Francis Sullivan On Certainty . . . . . . . . . . . . . . 5--7
David I. Lewin Keeping Track of the Big Event . . . . . 8--11
Jeff Will Imagenation Frame Grabbers for Computer
Vision Systems . . . . . . . . . . . . . 12--15
Geoff Bradley and
Denis Weaire Instabilities of Two Liquid Drops in
Contact . . . . . . . . . . . . . . . . 16--21
Steve W. Bova and
Clay P. Breshears and
Henry Gabb and
Bob Kuhn and
Bill Magro and
Rudolf Eigenmann and
Greg Gaertner and
Stefano Salvini and
Howard Scott Parallel Programming with Message
Passing and Directives . . . . . . . . . 22--37
C. Ross Ethier Guest Editor's Introduction:
Bioengineering and Biophysics . . . . . 38--39
Jeffrey Skolnick and
Andrzej Kolinski Computational Studies of Protein Folding 40--50
David A. Vorp and
David A. Steinman and
C. Ross Ethier Computational Modeling of Arterial
Biomechanics . . . . . . . . . . . . . . 51--64
Leo Joskowicz and
Russell H. Taylor Computers in Imaging and Guided Surgery 65--72
Norman Chonacky and
Mitchell Lit Computers for Integrative Instruction in
Bioengineering . . . . . . . . . . . . . 73--83
Bert W. Rust Fitting Nature's Basic Function. Part I:
Polynomials and Linear Least Squares . . 84--89
David M. Beazley and
Brian D. Ward and
Ian R. Cooke The Inside Story on Shared Libraries and
Dynamic Loading . . . . . . . . . . . . 90--97
Oliver Vormoor Quick and Easy Interactive Molecular
Dynamics Using Java3D . . . . . . . . . 98--104
Elizabeth A. Lunney Computing in Drug Discovery: The Design
Phase . . . . . . . . . . . . . . . . . 105--108
Oliver Vormoor Data Visualization: Parallel Coordinates
and Dimension Reduction . . . . . . . . 110--113
Francis Sullivan Willing Suspension of Disbelief . . . . 3
Greg Goth Will Terra Be Terrific? . . . . . . . . 4--8
Donald L. Shirer Versatile Laboratory Computer Interfaces 9--13
Efthimios Kaxiras Guest Editor's Introduction: Materials
Science . . . . . . . . . . . . . . . . 14--15
Peter Kratzer and
Matthias Scheffler Surface Knowledge: Toward a Predictive
Theory of Materials . . . . . . . . . . 16--25
Sauro Succi and
Olga Filippova and
Greg Smith and
Efthimios Kaxiras Applying the Lattice Boltzmann Equation
to Multiscale Fluid Problems . . . . . . 26--37
Steven G. Johnson and
Attila Mekis and
Shanhui Fan and
John D. Joannopoulos Molding the Flow of Light . . . . . . . 38--47
Enrico Onofri Elementary Celestial Mechanics Using
Matlab . . . . . . . . . . . . . . . . . 48--53
J. Michael Owen An Open-Source Project for Modeling
Hydrodynamics in Astrophysical Systems 54--59
Bert W. Rust Fitting Nature's Basic Functions. Part
II: Estimating Uncertainties and Testing
Hypotheses . . . . . . . . . . . . . . . 60--64
Giovanni Aloisio and
Massimo Cafaro and
Carl Kesselman and
Roy Williams Web Access to Supercomputing . . . . . . 66--72
Andrea Clematis and
Michela Spagnuolo Analyzing Fuzzy Surface Modeling Using
Load-Balanced Computation . . . . . . . 74--81
Albert Y. Zomaya and
James A. Anderson and
David B. Fogel and
Gerard J. Milburn and
Grzegorz Rozenberg Nonconventional Computing Paradigms in
the New Millenium: a Roundtable . . . . 82--99
Anonymous 2001 Annual Index . . . . . . . . . . . 100, c3
Francis Sullivan What's New . . . . . . . . . . . . . . . 3--4
David I. Lewin Computer-Aided Paleontology: a New Look
for Dinosaurs . . . . . . . . . . . . . 5--9
Nancy Forbes and
Paul Messina Computer Science Today in the European
Union . . . . . . . . . . . . . . . . . 10--14
Douglas Tougaw and
Jon Sanders SunRay: a Cost-Effective Desktop
Computer Solution . . . . . . . . . . . 15--17
Srikanta Kumar and
Shankar Sastry Guest Editors' Introduction:
Biocomputation . . . . . . . . . . . . . 18--19
Rajeev Alur and
Calin Belta and
Vijay Kumar and
Max Mintz and
George J. Pappas and
Harvey Rubin and
Jonathan Schug Modeling and Analyzing Biomolecular
Networks . . . . . . . . . . . . . . . . 20--31
John H. Reif DNA Lattices: a Method for
Molecular-Scale Patterning and
Computation . . . . . . . . . . . . . . 32--41
Bud Mishra Comparing Genomes . . . . . . . . . . . 42--49
Ying Xu and
Dong Xu and
Dongsup Kim and
Victor Olman and
Jane Razumovskaya and
Tao Jiang Automated Assignment of Backbone NMR
Peaks Using Constrained Bipartite
Matching . . . . . . . . . . . . . . . . 50--62
Juhani Hämäläinen and
Kari Hirvi and
Hannu Rajaniemi Using Mathematical Models to Cope with
Complex Computer Simulations . . . . . . 64--72
George K. Thiruvathukal Java at Middle Age: Enabling Java for
Computational Science . . . . . . . . . 74--84
Yonggao Yang and
Xusheng Wang and
Jim X. Chen Rendering Avatars in Virtual Reality:
Integrating a $3$D Model with $2$D
Images . . . . . . . . . . . . . . . . . 86--91
Denis Donnelly The Fireworks Effect: Exploring
Trajectory Sets in Time . . . . . . . . 92--97
Francis Sullivan Trust but Verify . . . . . . . . . . . . 3--4
Greg Goth Fans of Hewlett--Packard Calculators Say
``It All Adds Up'' . . . . . . . . . . . 5--8
Donald L. Shirer Mathematica Spins Web Wizardry . . . . . 9--10
Charles J. Holland and
John Grosh Guest Editors' Introduction:
High-Performance Computing: Addressing
Defense Needs of Today and Tomorrow . . 11--14
Stephen J. Schraml and
Kent D. Kimsey and
Jerry A. Clarke High-Performance Computing Applications
for Survivability-Lethality Technologies 16--21
Jay Boris The Threat of Chemical and Biological
Terrorism: Roles for HPC in Preparing a
Response . . . . . . . . . . . . . . . . 22--32
Emily A. Jarvis and
Emily A. Carter The Role of Reactive Elements in the
Bond Coat for Thermal Barrier Coatings 33--41
Robert E. Peterkin and
John W. Luginsland A Virtual Prototyping Environment for
Directed-Energy Concepts . . . . . . . . 42--49
Alan J. Wallcraft and
Jarley E. Hurlburt and
E. Joseph Metzger and
Robert C. Rhodes and
Jay F. Shriver and
Ole Martin Smedstad Real-Time Ocean Modeling Systems . . . . 50--57
Mark A. Manzardo and
Kenneth G. LeSueur An Infrared-Scene Projector Digital
Model . . . . . . . . . . . . . . . . . 58--65
Frans M. Vos and
Hans J. W. Spoelder and
Desmond M. Germans and
Rutger Hofman and
Henri Bal Real-time, Adaptive Measurement of
Corneal Shapes . . . . . . . . . . . . . 66--76
Rubin H. Landau and
David Vediner and
Pornrat Wattanakasiwich and
Kevin R. Kyle Future Scientific Digital Documents with
MathML, XML, and SVG . . . . . . . . . . 77--85
Isabel Beichl and
Francis Sullivan It's Bound to Be Right . . . . . . . . . 86--89
Karen Devine and
Erik Boman and
Robert Heapby and
Bruce Hendrickson and
Courtenay Vaughan Zoltan Data Management Service for
Parallel Dynamic Applications . . . . . 90--97
Francis Sullivan ``\ldots And Next Year, We're Going to
Do $3$D Problems'' . . . . . . . . . . . 3--4
David I. Lewin DNA Computing . . . . . . . . . . . . . 5--8
Doug Tougaw Finding Your Way with the Garmin GPS V 10--13
Douglass E. Post and
Francis Sullivan Guest Editors' Introduction: Limits on
Computation . . . . . . . . . . . . . . 14--15
Michael P. Frank The Physical Limits of Computing . . . . 16--26
Robert B. Laughlin The Physical Basis of Computability . . 27--30
Stephan Mertens Computational Complexity for Physicists 31--47
Charles Blilie Patterns in Scientific Software: An
Introduction . . . . . . . . . . . . . . 48--53
Sune R. Bahn and
Karsten W. Jacobsen An Object-Oriented Scripting Interface
to a Legacy Electronic Structure Code 56--66
Christoph Best and
Hans-Christian Hege Visualizing and Identifying
Conformational Ensembles in Molecular
Dynamics Trajectories . . . . . . . . . 68--75
Julian V. Noble The Full Monte . . . . . . . . . . . . . 76--81
Dave Stainforth and
Jamie Kettleborough and
Myles Allen and
Mat Collins and
Andy Heaps and
James Murphy Distributed Computing for
Public-Interest Climate Modeling
Research . . . . . . . . . . . . . . . . 82--89
Xusheng Wang and
Jim X. Chen and
Daniel B. Carr and
B. Sue Bell and
Linda Williams Pickle Geographic Statistics Visualization:
Web-Based Linked Micromap Plots . . . . 90--94
Geoffrey Fox XML and the Importance of Being an
Object . . . . . . . . . . . . . . . . . 96--98
Nicholas Giordano On Hearing the ``Shape'' of a Vibrating
String . . . . . . . . . . . . . . . . . 100, C3
Francis Sullivan Oh, What a Tangled Web We Weave . . . . 3--5
Anonymous Focus . . . . . . . . . . . . . . . . . 6--11
George Karypis Guest Editor's Introduction: Data Mining 12--13
Auroop R. Ganguly A Hybrid Approach to Improving Rainfall
Forecasts . . . . . . . . . . . . . . . 14--21
David S. Thompson and
Jaya Sreevalsan Nair and
Satya Sridhar Dusi Venkata and
Raghu K. Machiraju and
Ming Jiang and
Gheorghe Craciun Physics-Based Feature Mining for Large
Data Exploration . . . . . . . . . . . . 22--30
Naren Ramakrishnan and
Chris Bailey-Kellogg Sampling Strategies for Mining in
Data-Scarce Domains . . . . . . . . . . 31--43
Robert Grossman and
Marco Mazzucco DataSpace: a Data Web for the
Exploratory Analysis and Mining of Data 44--51
Chandrika Kamath and
Erick Cantú-Paz and
Imola K. Fodor and
Nu Ai Tang Classifying of Bent-Double Galaxies . . 52--60
Madhu Chetty and
Rajkumar Buyya Weaving Computational Grids: How
Analogous Are They with Electrical
Grids? . . . . . . . . . . . . . . . . . 61--71
Bert W. Rust Fitting Nature's Basic Functions. Part
III: Exponentials, Sinusoids, and
Nonlinear Least Squares . . . . . . . . 72--77
Emil Ong MPI Ruby: Scripting in a Parallel
Environment . . . . . . . . . . . . . . 78--82
Geoffrey Fox E-Science Meets Computational Science
and Information Technology . . . . . . . 84--85
Dale R. Shires and
William Green and
Shawn Walsh Designing, Controlling, and Visualizing
Composite Material Manufacturing . . . . 86--91
George Cybenko Understanding Quantum Computing . . . . 92--93
Matt Marone The Mercer Online Interactive Chaotic
Pendulum . . . . . . . . . . . . . . . . 94, C3
Francis Sullivan It All Comes Down To $ \mbox {B \_ NEW}
\Leftarrow B_0 \oplus (B_1 \vee B_2) $ 2--3
Greg Goth Infrastructure Simulation Effort Has
High Hopes, Faces High Hurdles . . . . . 4--11
Nancy Forbes Treading New Ground . . . . . . . . . . 12--13
Donald L. Shirer Planetarium and Observer Software . . . 14--23
William F. Spotz and
Paul Swarztrauber Guest Editors' Introduction: Climate
Modeling . . . . . . . . . . . . . . . . 24--25
Stephen J. Thomas and
Richard D. Loft and
John M. Dennis Parallel Implementation Issues: Global
versus Local Methods . . . . . . . . . . 26--31
David A. Randall and
Todd D. Ringler and
Ross P. Heikes and
Phil Jones and
John Baumgardner Climate Modeling with Spherical Geodesic
Grids . . . . . . . . . . . . . . . . . 32--41
Mohamed Iskandarani and
Dale B. Haidvogel and
Julia C. Levin and
Enrique Curchitser and
Christopher A. Edwards Multiscale Geophysical Modeling Using
the Spectral Element Method . . . . . . 42--48
Kao-San Yeh and
Shian-Jiann Lin and
Richard B. Rood Applying Local Discretization Methods in
the NASA Finite-Volume General
Circulation Model . . . . . . . . . . . 49--54
Johann Feichter and
Martin Schultz and
Thomas Diehl Modeling Chemical Constituents of the
Atmosphere . . . . . . . . . . . . . . . 56--63
Vicky Pope and
Terry Davies Testing and Evaluating Atmospheric
Climate Models . . . . . . . . . . . . . 64--69
Geoffrey Fox Message Passing: From Parallel Computing
to the Grid . . . . . . . . . . . . . . 70--73
Richard R. Silbar Web Delivery of Interactive
Laboratories: Comparing Three Authoring
Tools . . . . . . . . . . . . . . . . . 74--78
David H. Bailey and
George Cybenko Book and Web Reviews: a Reclusive Kind
of Science; a New Kind of Teleology . . 79--83
Paul F. Dubois Designing Scientific Components . . . . 84--90
Julian V. Noble The Right Angle: Precise Numerical
Orthogonality in Eigenstates . . . . . . 91--96, c3
Francis Sullivan EWD: Making It Simple Is Not Easy . . . 2--3
David Lewin Vintage Computing . . . . . . . . . . . 4--10
Douglas Tougaw The Samsung SVP-6000 Presents Several
Benefits . . . . . . . . . . . . . . . . 11--13
Fionn Murtagh and
Jean-Luc Starck and
Mireille Louys Distributed Visual Information
Management in Astronomy . . . . . . . . 14--23
Reiko Suzuki and
Hiroshi Sato and
Mineo Kimura Antiproton-Hydrogen Atom Collision at
Intermediate Energy . . . . . . . . . . 24--33
Xing Dongshan and
Shen Junyi A New Markov Model For Web Access
Prediction . . . . . . . . . . . . . . . 34--39
D. E. Stevenson The Michelson--Morley Experiment: a Case
Study in Validation . . . . . . . . . . 40--51
Fahri Basegmez Extending Scientific Application with
Scripting Capabilities . . . . . . . . . 52--59
Hai Zhuge Clustering Soft-Devices in the Semantic
Grid . . . . . . . . . . . . . . . . . . 60--62
Charles Patterson Two Approaches to Teaching Computational
Physics . . . . . . . . . . . . . . . . 64--68
Isabel Beichl Dealing with Degeneracy in Triangulation 70--74
Marco Lanzagorta Interactive Visualization of a
High-Resolution Reconstruction of the
Moon . . . . . . . . . . . . . . . . . . 78--82
Anonymous 2002 Annual Index . . . . . . . . . . . 83, C3
Francis Sullivan From the Editors: Frankenstein Jr. . . . 2--3
David I. Lewin and
Greg Goth News . . . . . . . . . . . . . . . . . . 4--13
Don Shirer Out on a LIMS (And Other Arboreal
Features) . . . . . . . . . . . . . . . 14--16
Nancy Forbes and
Mike Foster Guest Editors' Introduction: The End of
Moore's Law? . . . . . . . . . . . . . . 18--19
James D. Meindl Beyond Moore's Law: The Interconnect Era 20--24
Thomas N. Theis Beyond the Silicon Transistor: Personal
Observations . . . . . . . . . . . . . . 25--29
Charles Wessner Sustaining Moore's Law and the US
Economy . . . . . . . . . . . . . . . . 30--38
Keith Stein and
Tayfun Tezduyar and
Richard Benney Computational Methods for Modeling
Parachute Systems . . . . . . . . . . . 39--46
April K. Andreas and
Isabel Beichl Estimating the Work in Integer
Partitioning . . . . . . . . . . . . . . 48--56
Geoffrey Fox Java and Grande Applications . . . . . . 60--62
Ulrich H. E. Hansmann Protein Folding in Silico: An Overview 64--69
Thilo Ernst and
Tom Rother and
Franz Schreier and
Jochen Wauer and
Wolfgang Balzer DLR's VirtualLab: Scientific Software
Just a Mouse Click Away . . . . . . . . 70--79
Dario Benedetto and
Emanuele Caglioti and
Vittorio Loreto Zipping Out Relevant Information . . . . 80--85
Peter M. Ketcham and
David L. Feder Visualizing Bose--Einstein Condensates 86--89
Mario Belloni and
Wolfgang Christian Physlets for Quantum Mechanics . . . . . 90--96, c3
Francis Sullivan From the Editors: Less Is More (Is Less) 3--3
Pam Frost Gorder and
Anne Jacobson News . . . . . . . . . . . . . . . . . . 4--8
L. Alan Kraft Making Home DVDs: Dell's Movie Studio
Bundle . . . . . . . . . . . . . . . . . 9--10
Jim X. Chen and
Aiichiro Nakano Guest Editors' Introduction:
High-Dimensional Data Acquisition,
Computing, and Visualization . . . . . . 12--13
Alexander Hinneburg and
Daniel Keim and
Markus Wawryniuk Using Projections to Visually Cluster
High-Dimensional Data . . . . . . . . . 14--25
Ashish Sharma and
Rajiv K. Kalia and
Aiichiro Nakano and
Priya Vashishta Large Multidimensional Data
Visualization for Materials Science . . 26--33
Kwan-Liu Ma Visualizing Time-Varying Volume Data . . 34--42
Ruixin Yang and
Menas Kafatos and
Brian Doty and
James L. Kinter, III and
Long Pham A Distributed Enhanced Server for
Multidimensional Scientific Data . . . . 44--52
Yonggao Yang and
Jim X. Chen and
Woosung Kim and
Changjin Kee Nonlinear Projection: Using Deformations
in $3$D Viewing . . . . . . . . . . . . 54--59
Kurt Binder and
Jürgen Horbach and
Walter Kob and
Anke Winkler The Interplay Between Structure and
Ionic Motions in Glasses . . . . . . . . 60--66
Geoffrey Fox Grid Computing Environments . . . . . . 68--72
Bert W. Rust Fitting Nature's Basic Functions. Part
IV: The Variable Projection Algorithm 74--79
Kevin Craig The Role of Computers in Mechatronics 80--85
Bruce M. Boghosian A Look at Lattice Boltzmann Equations 86--87
Teresa L. Cottom Using SWIG to Bind C++ to Python . . . . 88--96, c3
Francis Sullivan How Right You Are! . . . . . . . . . . . 2--3
Pam Frost Gorder and
Anne Jacobson News . . . . . . . . . . . . . . . . . . 4--8
Norman Chonacky and
Dante Choi Science and Engineering Databases in an
Open-Source Software World . . . . . . . 10--13
Norman Chonacky Guest Editor's Introduction: Scientific
Databases . . . . . . . . . . . . . . . 14--15
Cornelia Büchen-Osmond The Universal Virus Database ICTVdB . . 16--25
Stephen W. Gaarenstroom Surface Science Spectra: a Hybrid
Journal-Database . . . . . . . . . . . . 26--30
Roman Dial and
Barbara Bond and
Judith Bayard Cushing and
Nalini Nadkarni How Trees and Forests Inform
Biodiversity and Ecosystem Informatics 32--43
James D. Myers and
Alan Chappell and
Matthew Elder and
Al Geist and
Jens Schwidder Re-Integrating the Research Record . . . 44--50
Shiang-Woei Chyuan and
Yunn-Shiuan Liao and
Jeng-Tzong Chen An Efficient Method for Solving
Electrostatic Problems . . . . . . . . . 52--58
Bryan Carpenter and
Geoffrey Fox HPJava: a Data Parallel Programming
Alternative . . . . . . . . . . . . . . 60--64
Robert C. Kirby A New Look at Expression Templates for
Matrix Computation . . . . . . . . . . . 66--70
Dietrich Stauffer Sociophysics Simulations . . . . . . . . 71--75
Julian V. Noble Recurses! . . . . . . . . . . . . . . . 76--81
James G. Nagy and
Dianne P. O'Leary Image Deblurring: I Can See Clearly Now 82--84
Jim X. Chen New Graphics Pipeline Approach Speeds Up
Atomic Primitives Rendering . . . . . . 86--88, c3
Francis Sullivan Computational Science: We'll Know It
When We See It . . . . . . . . . . . . . 2--2
Anne Jacobson and
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 3--7
Doug Tougaw and
Jeff Will Visualizing the Future of Virtual
Reality . . . . . . . . . . . . . . . . 8--11
William L. Hase and
Gustavo E. Scuseria Guest Editors' Introduction:
Computational Chemistry . . . . . . . . 12--13
Stefan Goedecker and
Gustavo E. Scuseria Linear Scaling Electronic Structure
Methods in Chemistry and Physics . . . . 14--21
Robert E. Wyatt and
Eric R. Bittner Using Quantum Trajectories and Adaptive
Grids to Solve Quantum Dynamical
Problems . . . . . . . . . . . . . . . . 22--30
Srinivasan S. Iyengar and
Christian J. Burnham and
Matt K. Petersen and
Gregory A. Voth Modeling Condensed-Phase Chemistry
Through Molecular Dynamics Simulation 31--35
William L. Hase and
Kihyung Song and
Mark S. Gordon Direct Dynamics Simulations . . . . . . 36--44
Christoph Lossen Singular: a Computer Algebra System . . 45--55
R. Bowen Loftin Multisensory Perception: Beyond the
Visual in Visualization . . . . . . . . 56--58
John Reid The Future of Fortran . . . . . . . . . 59--67
Dianne O'Leary and
Yalin E. Sagduyu Robot Control: Swinging Like a Pendulum 68--74
Muhammad Sahimi Large-Scale Porous Media and Wavelet
Transformations . . . . . . . . . . . . 75--87, 92--93
David M. Smith Using Multiple-Precision Arithmetic . . 88--93
Geoffrey Fox Integrating Computing and Information on
Grids . . . . . . . . . . . . . . . . . 94--96
Francis Sullivan From the Editors: Reproduced and
Reproducible Results . . . . . . . . . . 3--4
Anne Jacobson News . . . . . . . . . . . . . . . . . . 6--9
Joseph DiDio III Opening Doors with OpenOffice.org . . . 10--13
Aiichiro Nakano and
Jim X. Chen Guest Editors' Introduction:
High-Dimensional Data Acquisition,
Computing, and Visualization . . . . . . 14--15
Ani Thakar and
Alex Szalay and
Peter Kunszt and
Jim Gray Migrating a Multiterabyte Archive from
Object to Relational Databases . . . . . 16--29
Kerby Shedden and
Ker-Chau Li Dimension Reduction and Spatiotemporal
Regression: Applications to Neuroimaging 30--36
Yonggao Yang and
Jim X. Chen and
Woosung Kim Gene Expression Clustering and $3$D
Visualization . . . . . . . . . . . . . 37--43
François Major Building Three-Dimensional Ribonucleic
Acid Structures . . . . . . . . . . . . 44--53
Nargess Memarsadeghi and
Dianne P. O'Leary Classified Information: The Data
Clustering Problem . . . . . . . . . . . 54--60
Joan Adler Visualization in Atomistic and Spin
Simulations . . . . . . . . . . . . . . 61--65
James A. Ballas and
Derek Brock and
Justin Nevitt Using Audio to Enhance Information Tasks 66--71
George L. Donohue Undergraduate Use of Complex Simulation
Tools for Airspace Design . . . . . . . 72--75
Geoffrey Fox Data and Metadata on the Semantic Grid 76--78
John B. Rundle Scaling and Critical Phenomena In Nature 80--82
Paul F. Dubois and
Thomas Epperly and
Gary Kumfert Why Johnny Can't Build . . . . . . . . . 83--88
Francis Sullivan From the Editors: Ask the Hard Questions 3--5
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 6--9
Doug Tougaw National Instruments Records a Hit with
ELVIS . . . . . . . . . . . . . . . . . 10--12
Matthew A. Kupinski Guest Editor's Introduction: Computing
in Optics . . . . . . . . . . . . . . . 13--14
Aramais R. Zakharian and
Jerome V. Moloney and
Masud Mansuripur Simulating Near-Field Effects in
High-Density Optical-Disk Data Storage 15--21
Kurt Edmund Oughstun Computational Methods in Ultrafast
Time-Domain Optics . . . . . . . . . . . 22--32
Martin Schweiger and
Adam Gibson and
Simon R. Arridge Computational Aspects of Diffuse Optical
Tomography . . . . . . . . . . . . . . . 33--41
E. Keith Hege and
Stuart M. Jefferies and
Michael Lloyd-Hart Computing and Telescopes at the
Frontiers of Optical Astronomy . . . . . 42--51
Jacob Kogan and
Charles Nicholas and
Vladimir Volkovich Text Mining with Information-Theoretic
Clustering . . . . . . . . . . . . . . . 52--59
Dianne P. O'Leary and
Nargess Memarsadeghi The Direction-of-Arrival Problem: Coming
at You . . . . . . . . . . . . . . . . . 60--70
Jeffrey N. Johnson and
Paul F. Dubois Issue Tracking . . . . . . . . . . . . . 71--77
Lucilla de Arcangelis Modeling the Sol-Gel Transition . . . . 78--87
Anonymous Computing in Science & Engineering 2003
Annual Index, Volume 5 . . . . . . . . . 88--91
Michael E. Peskin Numerical Problem Solving for
Undergraduate Core Courses . . . . . . . 92--96, C3
Francis Sullivan From the Editors: Say Every Word on
Every Slide . . . . . . . . . . . . . . 3--4
Joseph DiDio III and
Norman Chonacky Caveat Emptor: What to Know Before
Trying to Beat a Consumer System into a
Scientific Instrument . . . . . . . . . 5--11
Ghassem R. Asrar Guest Editor's Introduction: a Pathway
to Decisions on Earth's Environment and
Natural Resources . . . . . . . . . . . 13--16
Chris Hill and
Cecelia DeLuca and
Balaji and
Max Suarez and
Arlindo da Silva The Architecture of the Earth System
Modeling Framework . . . . . . . . . . . 18--28
Shian-Jiann Lin and
Robert Atlas and
Kao-San Yeh Global Weather Prediction and High-End
Computing at NASA . . . . . . . . . . . 29--35
Andrea Donnellan and
John Rundle and
John Ries and
Geoffrey Fox and
Marlon Pierce and
Jay Parker and
Robert Crippen and
Eric DeJong and
Ben Chao and
Weijia Kuang and
Dennis McLeod and
Mitsuhiro Matu'ura and
Jeremy Bloxham Illuminating Earth's Interior through
Advanced Computing . . . . . . . . . . . 36--44
Roger L. King and
Ronald J. Birk Developing Earth System Science
Knowledge to Manage Earth's Natural
Resources . . . . . . . . . . . . . . . 45--51
Chris Hoffmann and
Voicu Popescu and
Sami Kilic and
Mete Sozen Modeling, Simulation, and Visualization:
The Pentagon on September 11th . . . . . 52--60
Andrzej Pekalski A Short Guide to Predator--Prey Lattice
Models . . . . . . . . . . . . . . . . . 62--66
Dianne P. O'Leary Models of Infection: Person to Person 68--73
George K. Thiruvathukal and
David Beazley XML and Computational Science . . . . . 74--80
Fernando Díez and
Roberto Moriyón Solving Mathematical Exercises that
Involve Symbolic Computations . . . . . 81--84
Marjorie G. Hahn New Exposition on Probability and
Statistics . . . . . . . . . . . . . . . 85--88
Chris Harding Modeling Geoscience Data in a
Multisensory Virtual Environment . . . . 89--92
Marlon Pierce and
Geoffrey Fox Making Scientific Applications as Web
Services . . . . . . . . . . . . . . . . 93--96
Francis Sullivan From the Editors: Sez Who? . . . . . . . 4--5
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 6--11
Douglass Post Guest Editor's Introduction: Frontiers
of Simulation . . . . . . . . . . . . . 12--13
Tamas I. Gombosi and
Kenneth G. Powell and
Darren L. De Zeeuw and
C. Robert Clauer and
Kenneth C. Hansen and
Ward B. Manchester and
Aaron J. Ridley and
Ilia I. Roussev and
Igor V. Sokolov and
Quentin F. Stout and
Gábor Tóth Solution-Adaptive Magnetohydrodynamics
for Space Plasmas: Sun-to-Earth
Simulations . . . . . . . . . . . . . . 14--35
Fernando F. Grinstein and
Christer Fureby From Canonical to Complex Flows: Recent
Progress on Monotonically Integrated LES 36--49
Dianne P. O'Leary More Models of Infection: It's Epidemic 50--56
Leo P. Kadanoff Excellence in Computer Simulation . . . 57--67
Rubin H. Landau Computational Physics for
Undergraduates: The CPUG Degree Program
at Oregon State University . . . . . . . 68--75
Eugenio Roanes-Lozano and
Eugenio Roanes-Macías and
Luis M. Laita The Geometry of Algebraic Systems and
Their Exact Solving Using Gröbner Bases 76--79
Michael Creutz Simulating Quarks . . . . . . . . . . . 80--85
George K. Thiruvathukal and
Konstantin Läufer Natural XML for Data Binding,
Processing, and Persistence . . . . . . 86--92
Geoffrey Fox Software Development Around a
Millisecond . . . . . . . . . . . . . . 93--96
Francis Sullivan From the Editors: Computational Science
and Pathological Science . . . . . . . . 2--3
Pam Frost Gorder and
Lissa E. Harris News . . . . . . . . . . . . . . . . . . 4--7
Norman Chonacky Stella: Growing Upward, Downward, and
Outward . . . . . . . . . . . . . . . . 8--15
Douglass Post Guest Editor's Introduction: Frontiers
of Simulation, Part II . . . . . . . . . 16--17
C. L. Winter and
Everett P. Springer and
Keeley Costigan and
Patricia Fasel and
Sue Mniewski and
George Zyvoloski Virtual Watersheds: Simulating the Water
Balance of the Rio Grande Basin . . . . 18--26
Rainald Löhner and
Juan Cebral and
Chi Yang and
Joseph D. Baum and
Eric Mestreau and
Charles Charman and
Daniele Pelessone Large-Scale Fluid-Structure Interaction
Simulations . . . . . . . . . . . . . . 27--37
Ricardo Cortez and
Lisa Fauci and
Nathaniel Cowen and
Robert Dillon Simulation of Swimming Organisms:
Coupling Internal Mechanics with
External Fluid Dynamics . . . . . . . . 38--45
Galen R. Gisler and
Robert P. Weaver and
Charles L. Mader and
Michael L. Gittings Two- and Three-Dimensional Asteroid
Impact Simulations . . . . . . . . . . . 46--55
Eugenio Roanes-Lozano and
Eugenio Roanes-Macías and
Luis M. Laita Some Applications of Gröbner Bases . . . 56--60
Jonathan C. Roberts Visualization Equivalence for
Multisensory Perception: Learning from
the Visual . . . . . . . . . . . . . . . 61--65
Dianne P. O'Leary Fitting Exponentials: An Interest in
Rates . . . . . . . . . . . . . . . . . 66--72
Suzana Moss de Oliveira and
Jorge S. Sá Martins and
Paulo Murilo C. de Oliveira and
Karen Luz-Burgoa and
Armando Ticona and
Thadeu J. P. Penna The Penna Model for Biological Aging and
Speciation . . . . . . . . . . . . . . . 74--81
Guy Ashkenazi and
Ronnie Kosloff String, Ring, Sphere: Visualizing
Wavefunctions on Different Topologies 82--86
Glenn Downing and
Paul F. Dubois and
Teresa Cottom Data Sharing in Scientific Simulations 87--96
Francis Sullivan From the Editors: P $ \not = $ NP . . . 2
Anonymous Letters to the Editors . . . . . . . . . 3--5
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 6--9
Athena I. Vakali and
Georgios I. Papadimitriou Guest Editors' Introduction: Web
Engineering--The Evolution of New
Technologies . . . . . . . . . . . . . . 10--11
Juliana Freire and
Michael Benedikt Managing XML Data: An Abridged Overview 12--19
Demetrios Zeinalipour-Yazti and
Vana Kalogeraki and
Dimitrios Gunopulos Information Retrieval Techniques for
Peer-to-Peer Networks . . . . . . . . . 20--26
Elisa Bertino and
Elena Ferrari and
Anna Squicciarini Trust Negotiations: Concepts, Systems,
and Languages . . . . . . . . . . . . . 27--34
Noureddine Boudriga and
Mohammad S. Obaidat Intelligent Agents on the Web: a Review 35--42
Jaroslav Pokorný Web Searching and Information Retrieval 43--48
Pranam Kolari and
Anupam Joshi Web Mining: Research and Practice . . . 49--53
Jianliang Xu and
Jiangchuan Liu and
Bo Li and
Xiaohua Jia Caching and Prefetching for Web Content
Distribution . . . . . . . . . . . . . . 54--59
Antonio Leal and
Franciso Sánchez-Doblado and
María Perucha and
Ester Carrasco and
Magnolia Rincón and
Rafael Arrans and
Carlos Bernal Monte Carlo Simulation of Complex
Radiotherapy Treatments . . . . . . . . 60--68
Yonggao Yang and
Changqian Zhu and
Hua Zhang Real-Time Simulation: Water Droplets on
Glass Windows . . . . . . . . . . . . . 69--73
Dianne P. O'Leary Elastoplastic Torsion: Twist and Stress 74--83
Geoffrey Fox Grids of Grids of Simple Services . . . 84--87
George K. Thiruvathukal and
Konstantin Läufer Plone and Content Management . . . . . . 88--95
Peter Love Book Reviews: The Legacy of Alan Turing:
\booktitleAlan Turing: Life and Legacy
of a Great Thinker, edited by Christof
Teuscher . . . . . . . . . . . . . . . . 97--99
Rodrigo Carboni and
Francisco Frutos-Alfaro PCell: a $2$D Program for Visualizing
Convective Plasma Cells . . . . . . . . 101--104
Francis Sullivan From the Editors: The Future Ain't What
It Used to Be . . . . . . . . . . . . . 3--3
Lissa E. Harris News . . . . . . . . . . . . . . . . . . 4--7
Timothy Trucano and
Douglass Post Guest Editors' Introduction:
Verification and Validation in
Computational Science and Engineering 8--9
Alan Calder and
Jonathan Dursi and
Bruce Fryxell and
Tomek Plewa and
Greg Weirs and
Todd Dupont and
Harry Robey and
Jave Kane and
Bruce Remington and
Frank Timmes and
Guy Dimonte and
John Hayes and
Mike Zingale and
Paul Drake and
Paul Ricker and
Jim Stone and
Kevin Olson Validating Astrophysical Simulation
Codes . . . . . . . . . . . . . . . . . 10--20
David W. Pierce Beyond the Means: Validating Climate
Models with Higher-Order Statistics . . 22--29
Patrick J. Roache Building PDE Codes to be Verifiable and
Validatable . . . . . . . . . . . . . . 30--38
Robert F. Benjamin An Experimenter's Perspective on
Validating Codes and Models with
Experiments Having Shock-Accelerated
Fluid Interfaces . . . . . . . . . . . . 40--49
Wilfried N. Gansterer and
Yihua Bai and
Robert M. Day and
Robert C. Ward A Framework for Approximating Eigenpairs
in Electronic Structure Computations . . 50--59
Dianne P. O'Leary and
David A. Schug Achieving a Common Viewpoint: Yaw,
Pitch, and Roll . . . . . . . . . . . . 60--65
George K. Thiruvathukal Gentoo Linux: The Next Generation of
Linux . . . . . . . . . . . . . . . . . 66--74
Jonathan Chin and
Peter V. Coveney and
Shantenu Jha The Current State of the Grid . . . . . 75--77
Jan J. Zebrowski and
Rafal Baranowski Nonlinear Instabilities and
Nonstationarity in Human Heart-Rate
Variability . . . . . . . . . . . . . . 78--83
André Skupin A Picture from a Thousand Words . . . . 84--88
Francis Sullivan From the Editors: Good, Bad, or
Indifferent? . . . . . . . . . . . . . . 3--3
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 4--7
Charles J. Holland and
Robert E. Peterkin, Jr. Guest Editors' Introduction:
High-Performance Computing . . . . . . . 8--10
Jerry Bernholc and
Serge M. Nakhmanson and
Marco Buongiorno Nardelli and
Vincent Meunier Understanding and Enhancing Polarization
in Complex Materials . . . . . . . . . . 12--21
Thomas S. Anderson and
Mark L. Moran and
Stephen A. Ketcham and
James Lacombe Tracked Vehicle Simulations and Seismic
Wavefield Synthesis in Seismic Sensor
Systems . . . . . . . . . . . . . . . . 22--28
Robert Hansen and
James Forsythe A Grid Convergence Study of a Highly
Separated Turbulent Flow . . . . . . . . 30--37
Donghyun You and
Meng Wang and
Parviz Moin and
Rajat Mittal Study of Tip-Clearance Flow in
Turbomachines Using Large-Eddy
Simulation . . . . . . . . . . . . . . . 38--46
Timothy J. Madden and
James H. Miller Simulation of Unsteadiness in Chemical
Oxygen-Iodine Laser Flowfields . . . . . 47--54
Dianne P. O'Leary Multidimensional Integration: Partition
and Conquer . . . . . . . . . . . . . . 58--66
Paul Dubois Cafe Dubois, Polling Place Edition . . . 67--71
Desmond J. Higham Black--Scholes for Scientific Computing
Students . . . . . . . . . . . . . . . . 72--79
Donald A. Washburn and
Lauriann M. Jones Could Olfactory Displays Improve Data
Visualization? . . . . . . . . . . . . . 80--83
Debora Donato and
Luigi Laura and
Stefano Leonardi and
Stefano Millozzi Simulating the Webgraph: a Comparative
Analysis of Models . . . . . . . . . . . 84--89
Anonymous 2004 Annual Index . . . . . . . . . . . 91--96
Norman Chonacky From the Editors: An Evolving Mission 3--4
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 5--7
Norman Chonacky and
David Winch Maple, Mathematica, and Matlab: The 3M's
without the Tape . . . . . . . . . . . . 8--16
Bruce Boghosian A Crash Course on Computing . . . . . . 17--20
Anonymous Special Thanks to CiSE's Reviewers . . . 21
Yingping Huang and
Xiaorong Xiang and
Gregory Madey and
Steve E. Cabaniss Agent-Based Scientific Simulation . . . 22--29
Tsutomu Saito and
Kazuyoshi Takayama Applying Shock-Wave Research to
Volcanology . . . . . . . . . . . . . . 30--35
Robert W. Keyes After the Transistor, the Qubit? . . . . 36--41
Dror G. Feitelson The Supercomputer Industry in Light of
the Top500 Data . . . . . . . . . . . . 42--47
Zhigen Xu and
Yusong Yan and
Jim X. Chen OpenGL Programming in Java . . . . . . . 51--55
Dianne P. O'Leary Blind Deconvolution: Errors, Errors
Everywhere . . . . . . . . . . . . . . . 56--63
Ioannis N. Athanasiadis and
Pericles A. Mitkas Social Influence and Water Conservation:
An Agent-Based Approach . . . . . . . . 65--70
Hasan Dag and
Gürkan Soykan and
Senol Piskin and
Osman Yasar Computational Science and Engineering at
Istanbul Technical University . . . . . 72--77
Steven Knight Building Software with SCons . . . . . . 79--88
Norman Chonacky Staking New Ground . . . . . . . . . . . 3--4
Pam Frost Gorder Digital Detectives Reveal Art Forgeries 5--8
Norman Chonacky and
David Winch Reviews of Maple, Mathematica, and
Matlab: Coming Soon to a Publication
Near You . . . . . . . . . . . . . . . . 9--10
George K. Thiruvathukal Guest Editors' Introduction: Cluster
Computing . . . . . . . . . . . . . . . 11--13
Matthias K. Gobbert Configuration and Performance of a
Beowulf Cluster for Large-Scale
Scientific Simulations . . . . . . . . . 14--26
Dean E. Dauger and
Viktor K. Decyk Plug-and-Play Cluster Computing:
High-Performance Computing for the
Mainstream . . . . . . . . . . . . . . . 27--33
Philip Hatcher and
Mathew Reno and
Gabriel Antoniu and
Luc Bougé Cluster Computing with Java . . . . . . 34--39
James D. Teresco and
Jamal Faik and
Joseph E. Flaherty Resource-Aware Scientific Computation on
a Heterogeneous Cluster . . . . . . . . 40--50
Jack Dongarra and
Thomas Sterling and
Horst Simon and
Erich Strohmaier High-Performance Computing: Clusters,
Constellations, MPPs, and Future
Directions . . . . . . . . . . . . . . . 51--59
Dianne P. O'Leary Blind Deconvolution: a Matter of Norm 60--66
Gigi Karmous-Edwards Global E-Science Collaboration . . . . . 67--74
Pei-Dong Dai and
Tian-Yu Zhang and
Zheng-Min Wang and
Jim X. Chen and
Ke-Qiang Wang A Virtual Laboratory for Temporal Bone
Microanatomy . . . . . . . . . . . . . . 75--79
Denis Donnelly and
Bert Rust The Fast Fourier Transform for
Experimentalists, Part I: Concepts . . . 80--88
Norman Chonacky The Way Forward: Learning from Our Past 2--2
Pam Frost Gorder Computing Life's Family Tree . . . . . . 3--6
Norman Chonacky and
David Winch 3Ms for Instruction: Reviews of Maple,
Mathematica, and Matlab . . . . . . . . 7--13
Daniel M. Tartakovsky and
Francis J. Alexander Guest Editors' Introduction:
Multiphysics Modeling . . . . . . . . . 14--15
Dongbin Xiu and
Ioannis G. Kevrekidis and
Roger Ghanem An Equation-Free, Multiscale Approach to
Uncertainty Quantification . . . . . . . 16--23
Daniel F. Martin and
Phillip Colella and
Marian Anghel and
Francis J. Alexander Adaptive Mesh Refinement for Multiscale
Nonequilibrium Physics . . . . . . . . . 24--31
Francis J. Alexander and
Daniel M. Tartakovsky and
Alejandro L. Garcia Noise in Algorithm Refinement Methods 32--38
Vasileios Symeonidis and
George Em Karniadakis and
Bruce Caswell A Seamless Approach to Multiscale
Complex Fluid Simulation . . . . . . . . 39--46
James M. Hyman Patch Dynamics for Multiscale Problems 47--53
David H. Bailey High-Precision Floating-Point Arithmetic
in Scientific Computation . . . . . . . 54--61
George F. Viamontes and
Igor L. Markov and
John P. Hayes Is Quantum Search Practical? . . . . . . 62--70
Denis Donnelly and
Bert Rust The Fast Fourier Transform for
Experimentalists . . . . . . . . . . . . 71--71
Dianne P. O'Leary Finite Differences and Finite Elements:
Getting to Know You . . . . . . . . . . 72--79
Paul F. Dubois Maintaining Correctness in Scientific
Programs . . . . . . . . . . . . . . . . 80--85
Kerstin Hoef-Emden Molecular Phylogenetic Analyses and
Real-Life Data . . . . . . . . . . . . . 86--91
Beifang Yi and
Frederick C. Harris, Jr. and
Ling Wang and
Yusong Yan Real-Time Natural Hand Gestures . . . . 92--96, c3
N. Chonacky Over-the-Horizon: Not Just for Radar
Anymore . . . . . . . . . . . . . . . . 4--5
N. Chonacky and
D. Winch 3Ms for Instruction, Part 2: Maple,
Mathematica, and Matlab . . . . . . . . 14--23
J. B. Rundle Guest Editor's Introduction:
iSERVO---The International Solid Earth
Research Virtual Observatory . . . . . . 24--26
P. Mora and
H. Muhlhaus and
L. Gross and
Huilin Xing and
D. Weatherly and
S. Abe and
S. Latham and
L. Moresi ACcESS: Australia's contribution to the
iSERVO Institute's development . . . . . 27--37
Xiang-Chu Yin and
Zhonghua Lu and
Xuebin Chi and
Huihui Zhang The China ACES-iSERVO grid node . . . . 38--42
M. Matsu'ura Quest for predictability of geodynamic
processes through computer simulation 43--50
L. B. Grant and
M. M. Gould and
A. Donnellan and
D. McLeod and
A. Yun-An Chen and
Sang-Soo Sung and
M. Pierce and
G. C. Fox and
P. Rundle A Web services-based universal approach
to heterogeneous fault databases . . . . 51--57
A. W. Isenor and
J. R. Keeley Modeling generic oceanographic data
objects in XML . . . . . . . . . . . . . 58--66
F. Sullivan Book Review: Is that Your Final Answer? 67--67
D. P. O'Leary Eigenvalues: valuable principles . . . . 68--70
J. Behrens Adaptive atmospheric modeling:
scientific computing at its best . . . . 76--83
M. Tobis PyNSol: objects as scaffolding . . . . . 84--91
D. Donnelly and
B. Rust The Fast Fourier Transform for
experimentalists. Part II. Convolutions 92--95
F. Sullivan Let a Hundred Flowers Bloom and a
Hundred Schools of Thought Contend! . . 96--96
N. Chonacky Lots of Headroom . . . . . . . . . . . . 2--2
N. Chonacky and
D. Winch 3Ms: a Response . . . . . . . . . . . . 7--9
B. Boghosian and
P. Coveney Guest Editors' Introduction: Scientific
Applications of Grid Computing . . . . . 10--13
Suchuan Dong and
G. E. Karniadakis and
N. T. Karonis Cross-Site Computations on the TeraGrid 14--23
J. Chin and
M. J. Harvey and
S. Jha and
P. V. Coveney Scientific Grid Computing: The First
Generation . . . . . . . . . . . . . . . 24--32
B. Plale and
D. Gannon and
Yi Huang and
G. Kandaswamy and
S. Lee Pallickara and
A. Slominski Cooperating Services for Data-Driven
Computational Experimentation . . . . . 34--43
Dali Wang and
E. Carr and
L. J. Gross and
M. W. Berry Toward Ecosystem Modeling on Computing
Grids . . . . . . . . . . . . . . . . . 44--52
J. Fernandez and
S. Li Anisotropic Nonlinear Filtering of
Cellular Structures in Cryoelectron
Tomography . . . . . . . . . . . . . . . 54--61
D. P. O'Leary Solving Sparse Linear Systems: Taking
the Direct Approach . . . . . . . . . . 62--70
Lin Yang and
J. X. Chen and
Yanling Liu Virtual Human Anatomy . . . . . . . . . 71--73
B. Rust and
D. Donnelly The Fast Fourier Transform for
Experimentalists. Part III: Classical
Spectral Analysis . . . . . . . . . . . 74--78
K. Laufer A Hike through Post-EJB J2EE Web
Application Architecture . . . . . . . . 80--88
A. Hansen Physics and Fracture . . . . . . . . . . 90--95
D. P. O'Leary George Dantzig: a Remembrance . . . . . 96--96
Norman Chonacky From the Editors: This Is the Year that
Was . . . . . . . . . . . . . . . . . . 4
Pam Frost Gorder News . . . . . . . . . . . . . . . . . . 6--9
Bruce M. Boghosian and
Peter V. Coveney Guest Editors' Introduction: Scientific
Applications of Grid Computing, Part II 10--11
Kelvin K. Droegemeier and
Dennis Gannon and
Daniel Reed and
Beth Plale and
Jay Alameda and
Tom Baltzer and
Keith Brewster and
Richard Clark and
Ben Domenico and
Sara Graves and
Everette Joseph and
Donald Murray and
Rahul Ramachandran and
Mohan Ramamurthy and
Lavanya Ramakrishnan and
John A. Rushing and
Daniel Weber and
Robert Wilhelmson and
Anne Wilson and
Ming Xue and
Sepideh Yalda Service-Oriented Environments for
Dynamically Interacting with Mesoscale
Weather . . . . . . . . . . . . . . . . 12--29
Richard P. Bruin and
Martin T. Dove and
Mark Calleja and
Matthew G. Tucker Building and Managing the eMinerals
Clusters: a Case Study in Grid-Enabled
Cluster Operation . . . . . . . . . . . 30--37
Harvey Newman and
Richard Cavanaugh and
Julian James Bunn and
Iosif Legrand and
Steven H. Low and
Dan Nae and
Sylvain Ravot and
Conrad D. Steenberg and
Xun Su and
Michael Thomas and
Frank van Lingen and
Yang Xia and
Shawn McKee The UltraLight Project: The Network as
an Integrated and Managed Resource for
Data-Intensive Science . . . . . . . . . 38--47
Sauro Succi and
Federico Toschi and
Mario P. Tosi and
Patrizia Vignolo Bose--Einstein Condensates and the
Numerical Solution of the
Gross--Pitaevskii Equation . . . . . . . 48--57
George H. Rawitscher and
Israel Koltracht An Efficient Numerical Spectral Method
for Solving the Schrödinger Equation . . 58--66
Maxi San Miguel and
Victor M. Eguíluz and
Raul Toral and
Konstantin Klemm Binary and Multivariate Stochastic
Models of Consensus Formation . . . . . 67--73
Dianne P. O'Leary Fast Solvers and Sylvester Equations:
Both Sides Now . . . . . . . . . . . . . 74--80
Paul F. Dubois A Nest of Pythons . . . . . . . . . . . 81--84
Bert Rust and
Denis Donnelly The Fast Fourier Transform for
Experimentalists, Part IV:
Autoregressive Spectral Analysis . . . . 85--90
Anonymous 2005 Annual Index, Computing in Science
and Engineering, Volume 7, Number 6 . . 91--95
Paul F. Dubois Bean-Counted Research Is Smelly . . . . 96
Norman Chonacky The Spread Spectrum in Computing . . . . 2--3
Pam Frost Gorder En Route to Artificial Intelligence,
Software Learns Language . . . . . . . . 4--7
Tobias Haist and
Marcus Reicherter and
Min Wu and
Lars Seifert Using Graphics Boards to Compute
Holograms . . . . . . . . . . . . . . . 8--13
Norman Chonacky Special Thanks to CiSE's Peer Reviewers 14
Steven Gottlieb Guest Editor's Introduction:
Special-Purpose Computing . . . . . . . 15--17
Francesco Belletti and
Sebastiano Fabio Schifano and
Raffaele Tripiccione and
François Bodin and
Philippe Boucaud and
Jacques Micheli and
Olivier P\`ene and
France Nicola Cabibbo and
Sergio de Luca and
Alessandro Lonardo and
Davide Rossetti and
Piero Vicini and
Maxim Lukyanov and
Laurent Morin and
Norbert Paschedag and
Hubert Simma and
Vincent Morenas and
Dirk Pleiter and
Federico Rapuano Computing for LQCD: apeNEXT . . . . . . 18--29
Junichiro Makino The GRAPE Project . . . . . . . . . . . 30--40
Francesco Belletti and
Filippo Mantovani and
Giorgio Poli and
Sebastiano Fabio Schifano and
R. Tripiccione and
Isabel Campos and
Andres Cruz Flor and
Denis Navarro and
Sergio Perez Gaviro and
Daniele Sciretti and
Alfonso Tarancon and
José Luis Velasco and
Pedro Tellez and
Luis Antonio Fernandez and
Victor Martin-Mayor and
Antonio Munoz Sudupe and
Sergio Jimenez and
Andrea Maiorano and
Enzo Marinari and
Juan Jesus Ruiz-Lorenzo Ianus: An Adaptive FPGA Computer . . . . 41--49
Feng-Hsiung Hsu Chess Hardware in Deep Blue . . . . . . 50--60
Roeland M. H. Merks and
Alfons G. Hoekstra and
Jaap A. Kaandorp and
Peter M. A. Sloot and
Paulien Hogeweg Problem-Solving Environments for
Biological Morphogenesis . . . . . . . . 61--72
Raymond G. Jacquot and
Cameron H. G. Wright and
Thomas V. Edgar and
Robert F. Kubichek Visualization of Partial Differential
Equation Solutions . . . . . . . . . . . 73--77
Dianne P. O'Leary Computational Software: Writing Your
Legacy . . . . . . . . . . . . . . . . . 78--83
George K. Thiruvathukal Home Networking . . . . . . . . . . . . 84--91
Denis Donnelly The Fast Fourier Transform for
Experimentalists, Part V: Filters . . . 92--95
Francis Sullivan What Is It Like to Be a Bot? . . . . . . 96
Norman Chonacky And Now\ldots . . . . . . . . . . . . . 2
Sara Robinson Recent Research Provides New Picture of
Router-Level Internet . . . . . . . . . 3--6
Isabel Beichl and
Francis Sullivan Guest Editors' Introduction: Monte Carlo
Methods . . . . . . . . . . . . . . . . 7--8
Jacques G. Amar The Monte Carlo Method in Science and
Engineering . . . . . . . . . . . . . . 9--19
Erik Luijten Fluid Simulation with the Geometric
Cluster Monte Carlo Algorithm . . . . . 20--29
Dana Randall Rapidly Mixing Markov Chains with
Applications in Computer Science and
Physics . . . . . . . . . . . . . . . . 30--41
Isabel Beichl and
Francis Sullivan The Other Monte Carlo Method . . . . . . 42--47
Ben Shneiderman A Telescope for High-Dimensional Data 48--53
Mohammad Reza Rahimi Tabar and
Fatemeh Ghasemi and
Joachim Peinke and
Rudolf Friedrich and
Kamran Kaviani and
Fatemeh Taghavi and
Sara Sadeghi and
Golnoosh Bizhani and
Muhammad Sahimi New Computational Approaches to the
Analysis of Interbeat Intervals in Human
Subjects . . . . . . . . . . . . . . . . 54--65
Dianne P. O'Leary Updating and Downdating Matrix
Factorizations: a Change in Plans . . . 66--71
Denis Donnelly The Fast Fourier Transform for
Experimentalists, Part VI: Chirp of a
Bat . . . . . . . . . . . . . . . . . . 72--78
Konstantin Läufer A Hike through Post-EJB J2EE Web
Application Architecture, Part II . . . 79--87
Charles Day Engineering in Computing and Science . . 88
Norman Chonacky Evolution: It's not Just for Biology . . 2
Pam Frost Gorder Not Just for the Birds: Archiving
Massive Data Sets . . . . . . . . . . . 3--7
Rachel Kuske Noise and Signal Interaction . . . . . . 8--9
Grant Lythe and
Salman Habib Kink Stochastics . . . . . . . . . . . . 10--15
Gilles Hennenfent and
Felix J. Herrmann Seismic Denoising with Nonuniformly
Sampled Curvelets . . . . . . . . . . . 16--25
Edwin Kreuzer and
Wolfgang Sichermann The Effect of Sea Irregularities on Ship
Rolling . . . . . . . . . . . . . . . . 26--34
Rachel Kuske Multiple-Scales Approximation of a
Coherence Resonance Route to Chatter . . 35--43
James Brown Seeing into the Quantum World . . . . . 44--45
Norman Chonacky and
David Winch We're Listening to You! Results from Our
Recent Reader Survey . . . . . . . . . . 46--53
Dianne P. O'Leary Computer Memory and Arithmetic: a Look
under the Hood . . . . . . . . . . . . . 54--57
Dianne P. O'Leary Partial Solution to Last Issue's
Homework Assignment: Updating and
Downdating Matrix Factorizations: a
Change in Plans . . . . . . . . . . . . 58--59
Christian Schulze and
Dietrich Stauffer Recent Developments in Computer
Simulations of Language Competition . . 60--67
Hua Zhang and
Changqian Zhu and
Qiang Peng and
Jim X. Chen Using Geometric Algebra for $3$D Linear
Transformations . . . . . . . . . . . . 68--75
Osman Yasar and
Jose Maliekal and
Leigh J. Little and
Dawn Jones A Computational Technology Approach to
Education . . . . . . . . . . . . . . . 76--81
Paul Gray and
Thomas Murphy Something Wonderful this Way Comes . . . 82--87
Charles Day Turn on Your Computer and Simulate the
Future! . . . . . . . . . . . . . . . . 88
Norman Chonacky A Change of Landscape and a Broadened
Scope . . . . . . . . . . . . . . . . . 4--5
Pam Frost Gorder Computing in Biological Time: The Design
of an Anticocaine Molecule . . . . . . . 6--9
Aasim Azooz Analog Data Acquisition for Obtaining
I-V Characteristics Using Sound Cards 10--15
Martin Bernreuther and
Hans-Joachim Bungartz First Experiences with Group Projects in
CSE Education . . . . . . . . . . . . . 16--25
Mensur Omerbashich Gauss--Vanícek Spectral Analysis of the
Sepkoski Compendium: No New Life Cycles 26--30
Curt A. Moyer Numerical Solution of the Stationary
State Schrödinger Equation Using
Transparent Boundary Conditions . . . . 32--40
Zeng Zhe-Zhao and
Wang Yao-Nan and
Wen Hui Numerical Integration Based on a Neural
Network Algorithm . . . . . . . . . . . 42--48
Gregory R. Watson and
Nathan A. DeBardeleben Developing Scientific Applications Using
Eclipse . . . . . . . . . . . . . . . . 50--61
Bruce Mason Digital Libraries in Support of Science
Education: a Case for Computational
Physics . . . . . . . . . . . . . . . . 62--65
Robert Moorhead and
Chris Johnson and
Tamara Munzner and
Hanspeter Pfister and
Penny Rheingans and
Terry S. Yoo Visualization Research Challenges: a
Report Summary . . . . . . . . . . . . . 66--73
Dianne P. O'Leary Iterative Methods for Linear Systems:
Following the Meandering Way . . . . . . 74--80
Leonardo C. Ribeiro and
Ricardo M. Ruiz and
Eduardo M. Albuquerque and
Américo T. Bernardes Science in the Developing World: Running
Twice as Fast? . . . . . . . . . . . . . 81--87
Francis Sullivan Born to Compute . . . . . . . . . . . . 88
Norman Chonacky Has Computing Changed Physics Courses? 4--5
Pam Frost Gardner Digital Libraries Come of Age . . . . . 6--10
David Winch Guest Editor's Introduction: Computation
in Physics Courses . . . . . . . . . . . 11--15
Robert G. Fuller Numerical Computations in US
Undergraduate Physics Courses . . . . . 16--21
Rubin Landau Computational Physics: a Better Model
for Physics Education? . . . . . . . . . 22--30
Marty Johnston Implementing Curricular Change . . . . . 32--37
Jaime R. Taylor and
B. Alex King, III Using Computational Methods to
Reinvigorate an Undergraduate Physics
Curriculum . . . . . . . . . . . . . . . 38--43
Kelly R. Roos An Incremental Approach to Computational
Physics Education . . . . . . . . . . . 44--50
Wolfgang Christian and
Mario Belloni and
Douglas Brown An Open-Source XML Framework for
Authoring Curricular Material . . . . . 51--58
Mendel Schmiedekamp and
Aparna Subbu and
Shashi Phoha The Clustered Causal State Algorithm:
Efficient Pattern Discovery for Lossy
Data-Compression Applications . . . . . 59--67
Paul Dubois He's Baaack! . . . . . . . . . . . . . . 68--69
Sudarshan Raghunathan Making a Supercomputer Do What You Want:
High-Level Tools for Parallel
Programming . . . . . . . . . . . . . . 70--80
Shengjun Liu and
Xiaogang Jin and
Charlie C. L. Wang and
Jim X. Chen Water Wave Animation on Mesh Surfaces 81--87
Pau Amengual and
Raúl Toral Truels, or Survival of the Weakest . . . 88--95
Dianne P. O'Leary Multigrid Methods: Managing Massive
Meshes . . . . . . . . . . . . . . . . . 96--103
Charles Day My Computational Education . . . . . . . 104
Norman Chonacky Novelty, Utility, \ldots and More . . . 3
Pam Frost Gorder Neural Networks Show New Promise for
Machine Vision . . . . . . . . . . . . . 4--8
Steve McCormick and
Ulrich Rüde Guest Editors' Introduction: Multigrid
Computing . . . . . . . . . . . . . . . 10--11
Irad Yavneh Why Multigrid Methods Are So Efficient 12--22
Robert D. Falgout An Introduction to Algebraic Multigrid 24--33
Cornelis W. Oosterlee and
Francisco José Gaspar Lorenz Multigrid Methods for the Stokes System 34--43
Peter Bastian and
Christian Wieners Multigrid Methods on Adaptively Refined
Grids . . . . . . . . . . . . . . . . . 44--54
Benjamin Bergen and
Tobias Gradl and
Frank Hülsemann and
Ulrich Rüde A Massively Parallel Multigrid Method
for Finite Elements . . . . . . . . . . 56--62
Paul Dubois So Sue Me . . . . . . . . . . . . . . . 64--65
Greg Wilson Software Carpentry: Getting Scientists
to Write Better Code by Making Them More
Productive . . . . . . . . . . . . . . . 66--69
Dianne P. O'Leary Sensitivity Analysis: When a Little
Means a Lot . . . . . . . . . . . . . . 70--75
George K. Thiruvathukal and
Konstantin Läufer and
Benjamin Gonzalez Unit Testing Considered Useful . . . . . 76--87
Thomas Fent Counting (on) an Aging Population . . . 88--96
Anonymous 2006 Annual Index . . . . . . . . . . . 98--103
Francis Sullivan Is Numerical Analysis Boring? . . . . . 104
Norman Chonacky The Year that Was \ldots and Yet to Be 3--5
Pam Frost Gorder Grid Computing Yields Earthquake
Forecast . . . . . . . . . . . . . . . . 6--10
Jim X. Chen and
Tianyu Zhang Guest Editors' Introduction: Anatomic
Rendering and Visualization . . . . . . 11--12
Tong-Yee Lee and
Chung-Ren Yan and
Ming-Te Chi Stylized Rendering for Anatomic
Visualization . . . . . . . . . . . . . 13--19
Jinman Kim and
Stefan Eberl and
Dagan Feng Visualizing Dual-Modality Rendered
Volumes Using a Dual-Lookup Table
Transfer Function . . . . . . . . . . . 20--25
Tian-Yu Zhang and
Pei-Dong Dai and
Zheng-Min Wang and
Ke-Qiang Wang and
Jim X. Chen and
Le Xie A Contour Map of the Ear's Vestibular
Apparatus Based on $3$D Reconstruction 26--31
Wang Qiang and
Zhigeng Pan and
Chen Chun and
Bu Jianjun Surface Rendering for Parallel Slices of
Contours from Medical Imaging . . . . . 32--37
Richard P. Sharp and
Randall Ridgway and
Kishore Mosaliganti and
Pamela Wenzel and
Tony Pan and
Alain de Bruin and
Raghu Machiraju and
Kun Huang and
Gustavo Leone and
Joel H. Saltz Volume Rendering Phenotype Differences
in Mouse Placenta Microscopy Data . . . 38--47
David C. Banks and
Kevin Beason Fast Global Illumination for Visualizing
Isosurfaces with a $3$D Illumination
Grid . . . . . . . . . . . . . . . . . . 48--54
Dan Lubin and
Robert Massom Remote Sensing of Earth's Polar Regions:
Opportunities for Computational Science 58--71
Isabel Beichl and
Dianne P. O'Leary and
Francis Sullivan Monte Carlo Minimization and Counting:
One, Two, \ldots, Too Many . . . . . . . 72--80
Konstantin Läufer and
George K. Thiruvathukal and
Benjamín González A Hike through a Post-EJB J2EE Web
Application Architecture, Part III . . . 82--95
Paul F. Dubois Djange Me . . . . . . . . . . . . . . . 96--97
Martin Berzins and
Bradley A. Shadwick and
Denis Donnelly On the Role and Place of Computation in
Science and Engineering . . . . . . . . 98--103
Charles Day The Death of Distance Has Been
Exaggerated . . . . . . . . . . . . . . 104
Norman Chonacky The Neutrino Strikes Again . . . . . . . 2
Pam Frost Gorder Multicore Processors for Science and
Engineering . . . . . . . . . . . . . . 3--7
Daniel M. Tartakovsky and
Dongbin Xiu Guest Editors' Introduction: Stochastic
Modeling of Complex Systems . . . . . . 8--9
Leon M. Arriola and
James M. Hyman Being Sensitive to Uncertainty . . . . . 10--20
Guang Lin and
Xiaoliang Wan and
Chau-Hsing Su and
George Em Karniadakis Stochastic Computational Fluid Mechanics 21--29
Nicholas Zabaras and
Sethuraman Sankaran An Information-Theoretic Approach to
Stochastic Materials Modeling . . . . . 30--39
Timothy R. Ginn and
Frank J. Loge and
Timothy D. Scheibe Explaining `Noise' as Environmental
Variations in Population Dynamics . . . 40--49
Zuo-Jun (Max) Shen Integrated Stochastic Supply-Chain
Design Models . . . . . . . . . . . . . 50--59
Uma S. Bhatt and
Jing Zhang and
Craig S. Lingle and
Lisa M. Phillips and
Wendell V. Tangborn Examining Glacier Mass Balances with a
Hierarchical Modeling Approach . . . . . 60--67
Paul F. Dubois The Future that Never Was . . . . . . . 68--69
George K. Thiruvathukal Project Hosting: Expanding the
Scientific Programmer's Toolbox . . . . 70--75
Hiroshi Akiba and
Kwan-Liu Ma and
Jacqueline H. Chen and
Evatt R. Hawkes Visualizing Multivariate Volume Data
from Turbulent Combustion Simulations 76--83
Ehsan Nedaaee Oskoee Computing Properties of Materials Based
on the Ginzburg--Landau Equation . . . . 84--95
Dianne P. O'Leary Beetles, Cannibalism, and Chaos:
Analyzing a Dynamical System Model . . . 96--103
Charles Day Quantum Computing Is Exciting and
Important--Really! . . . . . . . . . . . 104
Norman Chonacky You're Recommending What?! . . . . . . . 2
Michael Jay Schillaci Computationally Complete . . . . . . . . 3--6
Paul F. Dubois Guest Editor's Introduction: Python:
Batteries Included . . . . . . . . . . . 7--9
Travis E. Oliphant Python for Scientific Computing . . . . 10--20
Fernando Pérez and
Brian E. Granger IPython: a System for Interactive
Scientific Computing . . . . . . . . . . 21--29
Arnd Bäcker Computational Physics Education with
Python . . . . . . . . . . . . . . . . . 30--33
Christopher R. Myers and
Ryan N. Gutenkunst and
James P. Sethna Python Unleashed on Systems Biology . . 34--37
Perry Greenfield Reaching for the Stars with Python . . . 38--40
Ryan W. Krauss and
Wayne J. Book A Python Module for Modeling and Control
Design of Flexible Robots . . . . . . . 41--45
Peter Bienstman and
Lieven Vanholme and
Wim Bogaerts and
Pieter Dumon and
Peter Vandersteegen Python in Nanophotonics Research . . . . 46--47
Kent-Andre Mardal and
Ola Skavhaug and
Glenn T. Lines and
Gunnar A. Staff and
Åsmund Òdegård Using Python to Solve Partial
Differential Equations . . . . . . . . . 48--51
K. Jarrod Millman and
Matthew Brett Analysis of Functional Magnetic
Resonance Imaging in Python . . . . . . 52--55
Xuan Shi Python for Internet GIS Applications . . 56--59
Arnd Bäcker Quantum Chaos in Billiards . . . . . . . 60--64
L. Bruno Tremblay and
Marika M. Holland and
Irina V. Gorodetskaya and
Gavin A. Schmidt An Ice-Free Arctic? Opportunities for
Computational Science . . . . . . . . . 65--74
Christopher R. Myers and
James P. Sethna Python for Education: Computational
Methods for Nonlinear Systems . . . . . 75--79
Dianne P. O'Leary A Partial Solution to Last Issue's
Homework Assignment: Beetles,
Cannibalism, and Chaos--Analyzing a
Dynamical System Model . . . . . . . . . 80--83
Julian V. Noble Making the Complex Simple . . . . . . . 84--89
John D. Hunter Matplotlib: a $2$D Graphics Environment 90--95
Francis Sullivan Wrong Again! . . . . . . . . . . . . . . 96
Norman Chonacky The Past, Present, and Future . . . . . 2--3
Anonymous Letters to the Editor . . . . . . . . . 4--6
Pam Frost Gorder Building Better Search Engines . . . . . 7--11
Howard E. Epstein and
Jed O. Kaplan and
Heike Lischke and
Qin Yu Simulating Future Changes in Arctic and
Subarctic Vegetation . . . . . . . . . . 12--23
Mario Belloni and
Wolfgang Christian and
Douglas Brown Open Source Physics Curricular Material
for Quantum Mechanics . . . . . . . . . 24--31
Zhigeng Pan and
Jianfeng Lu A Bayes-Based Region-Growing Algorithm
for Medical Image Segmentation . . . . . 32--38
Michael M. Fuller and
Dali Wang and
Louis J. Gross and
Michael W. Berry Computational Science for Natural
Resource Management . . . . . . . . . . 40--48
Trevor Cickovski and
Kedar Aras and
Maciej Swat and
Roeland M. H. Merks and
Tilmann Glimm and
H. George E. Hentschel and
Mark S. Alber and
James A. Glazier and
Stuart A. Newman and
Jesus A. Izaguirre From Genes to Organisms Via the Cell: a
Problem-Solving Environment for
Multicellular Development . . . . . . . 50--60
James L. Cornette Gauss--Vaní\vcek and Fourier Transform
Spectral Analyses of Marine Diversity 61--63
Sudarshan Raghunathan Parallel Computing Algorithms and
Applications . . . . . . . . . . . . . . 64--65
Paul F. Dubois Customer Service Says the Darnedest
Things . . . . . . . . . . . . . . . . . 66--67
Viktor K. Decyk and
Charles D. Norton and
Henry J. Gardner Why Fortran? . . . . . . . . . . . . . . 68--71
William R. Dieter and
Henry G. Dietz Designing a Cluster for Your Application 72--79
Krzysztof Kulakowski Some Recent Attempts to Simulate the
Heider Balance Problem . . . . . . . . . 80--85
Zhanping Liu and
Robert J. Moorhead, II Robust Loop Detection for Interactively
Placing Evenly Spaced Streamlines . . . 86--91
Rebecca Lippmann Kung and
Cedric Linder Improving Students' Self-Assessment of
Numerical Analysis Projects . . . . . . 92--95
Charles Day When Bits Bite . . . . . . . . . . . . . 96
Norman Chonacky Musings on a Metaphysics of Modeling . . 2--3
Maik Flanagin and
Aurélien Grenotton and
Jay Ratcliff and
Kevin B. Shaw and
John Sample and
Mahdi Abdelguerfi Hydraulic Splines: a Hybrid Approach to
Modeling River Channel Geometries . . . 4--15
Giovanni Danese and
Francesco Leporati and
Marco Bera and
Mauro Giachero and
Nelson Nazzicari and
Alvaro Spelgatti An Accelerator for Physics Simulations 16--25
William Franklin Algorithmic Design of a Fuzzy-Neural
Method . . . . . . . . . . . . . . . . . 26--31
Ian J. Grimstead and
David W. Walker and
Nick J. Avis and
Frederic Kleinermann and
John McClure $3$D Anatomical Model Visualization
within a Grid-Enabled Environment . . . 32--38
Xiaosong Yang and
Jian Chang and
Jian J. Zhang Animating the Human Muscle Structure . . 39--45
\vSimon Kos and
Marina Hru\vska and
Scott A. Crooker and
Avadh Saxena and
Darryl L. Smith Modeling Spin-Polarized Electron
Transport in Semiconductors for
Spintronics Applications . . . . . . . . 46--52
Dirk Lummerzheim Modeling and Forecasting Aurora . . . . 53--61
Dimitri Kusnezov How Big Can You Think? Challenges at the
Frontier . . . . . . . . . . . . . . . . 62--67
Paul F. Dubois Into the Future . . . . . . . . . . . . 68--69
Volodymyr V. Kindratenko and
Craig P. Steffen and
Robert J. Brunner Accelerating Scientific Applications
with Reconfigurable Computing: Getting
Started . . . . . . . . . . . . . . . . 70--77
Chenglie Hu Integrating Modern Research into
Numerical Computation Education . . . . 78--81
Claudio T. Silva and
Juliana Freire and
Steven P. Callahan Provenance for Visualizations:
Reproducibility and Beyond . . . . . . . 82--89
Kourosh Malek Transport in Protein Crystals, Part I:
Insights from Molecular Simulations . . 90--95
Francis Sullivan Is This the Party to Whom I Am Speaking? 96
Norman Chonacky The Web: For Sharing or Snaring? . . . . 3--4
Pam Frost Gorder Physics Experiment Could Spawn Permanent
Computing Grid . . . . . . . . . . . . . 5--9
Douglass E. Post Guest Editor's Introduction:
Computational Science and Engineering
for the US Department of Defense . . . . 10--11
Steven E. Gorrell and
Allan van de Wall and
Fu-Lin Tsung Understanding Unsteady Flow Features in
Transonic Compressors . . . . . . . . . 12--17
Timothy P. Fleming and
Peter J. Mardahl and
Lester Bowers and
Keith L. Cartwright and
Matthew T. Bettencourt and
Michael D. Haworth Virtual Prototyping of Novel Cathode
Designs for the Relativistic Magnetron 18--28
Wieslaw Maslowski and
Jaclyn Clement Kinney and
Jaromir Jakacki Toward Prediction of Environmental
Arctic Change . . . . . . . . . . . . . 29--34
Larry P. Davis and
Roy L. Campbell, Jr. and
William A. Ward, Jr. and
Cray J. Henry High-Performance Computing Acquisitions
Based on the Factors that Matter . . . . 35--44
David E. Newman and
Paul W. Terry and
Andrew S. Ware Shear Flows and Turbulence in Nature . . 45--52
Paul F. Dubois Career Contradictions . . . . . . . . . 53--54
Thomas Luu and
Ron Soltz and
Pavlos Vranas and
Christopher M. Frenz and
Francis Sullivan Petaflop Essay Contest . . . . . . . . . 55--59
Eric Ayars A Versatile Text for the Introductory
Computational Physics Course . . . . . . 60--61
Michael A. Gray Discrete Event Simulation: a Review of
SimEvents . . . . . . . . . . . . . . . 62--66
Michael Dennin and
Steven Barrett Turning Over a New Leaf . . . . . . . . 67--69
Kourosh Malek Transport in Protein Crystals, Part II:
Diffusion Simulation and Chiral
Recognition . . . . . . . . . . . . . . 70--75
Joel E. Tohline Scientific Visualization: a Necessary
Chore . . . . . . . . . . . . . . . . . 76--81
Konrad Hinsen Parallel Scripting with Python . . . . . 82--89
Mohankumar Nandagopal and
Natarajan Arunajadai On the Evaluation of Finite Hilbert
Transforms . . . . . . . . . . . . . . . 90--95
Charles Day The Computation of Poetry . . . . . . . 96
Norman Chonacky Where in this World Are You? . . . . . . 3--6
Robert G. Gregerson and
Tim H. Lindblom A Unique Textbook for Teaching Courses
in Bioinformatics . . . . . . . . . . . 7--8
Ani R. Thakar The Sloan Digital Sky Survey: Drinking
from the Fire Hose . . . . . . . . . . . 9--12
Eric H. Neilsen, Jr. The Sloan Digital Sky Survey Data
Archive Server . . . . . . . . . . . . . 13--17
Nolan Li and
Ani R. Thakar CasJobs and MyDB: a Batch Query
Workbench . . . . . . . . . . . . . . . 18--29
Ani R. Thakar and
Alex Szalay and
George Fekete and
Jim Gray The Catalog Archive Server Database
Management System . . . . . . . . . . . 30--37
Alex Szalay and
Ani R. Thakar and
Jim Gray The sqlLoader Data-Loading Pipeline . . 38--48
Barend J. Thijsse and
Bert W. Rust Freestyle Data Fitting and Global
Temperatures . . . . . . . . . . . . . . 49--59
Jordan Kyriakidis A Generic Approach to Electronic
Structure Calculations in Nanoscopic
Systems . . . . . . . . . . . . . . . . 60--69
Paul F. Dubois Sprinting Ain't Easy . . . . . . . . . . 70--71
Shan-Ho Tsai and
David P. Landau Spin Dynamics: An Atomistic Simulation
Tool for Magnetic Systems . . . . . . . 72--79
Michele Vallisneri and
Stanislav Babak Python and XML for Agile Scientific
Computing . . . . . . . . . . . . . . . 80--87
Steven P. Callahan and
Jason H. Callahan and
Carlos E. Scheidegger and
Claudio T. Silva Direct Volume Rendering: a $3$D Plotting
Technique for Scientific Data . . . . . 88--92
Matthias K. Gobbert and
Nagaraj K. Neerchal Preparing Graduate Students for
Interdisciplinary Careers . . . . . . . 93--95
Francis Sullivan Curb Your Enthusiasm . . . . . . . . . . 96
Norman Chonacky Turning a Page and Learning Something
Useful . . . . . . . . . . . . . . . . . 4--5
Pam Frost Gorder Computer Vision, Inspired by the Human
Brain . . . . . . . . . . . . . . . . . 6--11
Isabel Beichl and
Francis Sullivan Combinatorics in Computing . . . . . . . 12--13
Bruce Hendrickson and
Jonathan W. Berry Graph Analysis with High-Performance
Computing . . . . . . . . . . . . . . . 14--19
John R. Gilbert and
Steve Reinhardt and
Viral B. Shah A Unified Framework for Numerical and
Combinatorial Computing . . . . . . . . 20--25
Ivona Bezáková Sampling Binary Contingency Tables . . . 26--31
Heiko Bauke Passing Messages to Lonely Numbers . . . 32--40
Yanling Liu and
Jim X. Chen and
Lin Yang Real-Time Photorealistic Virtual Human
Anatomy . . . . . . . . . . . . . . . . 41--47
Lei Shi and
Xin Yang and
Hailang Pan $3$D Face Visualization Using Grid Light 48--54
Gaël Varoquaux Agile Computer Control of a Complex
Experiment . . . . . . . . . . . . . . . 55--59
Bill Feiereisen and
George K. Thiruvathukal At Issue . . . . . . . . . . . . . . . . 60--64
Joe Kaylor and
George K. Thiruvathukal A Virtual Computing Laboratory . . . . . 65--69
Debashish Chowdhury Molecular Motors: Design, Mechanism, and
Control . . . . . . . . . . . . . . . . 70--77
Kyungmin Ham and
Heath A. Barnett and
Leslie G. Butler Burning Issues in Tomography Analysis 78--81
Michael A. Gray Multiphysics Technologies . . . . . . . 82--84
R. Torsten Clay and
Richard Gass Books . . . . . . . . . . . . . . . . . 85--87
Charles Day The Irony of Craigslist . . . . . . . . 88
Norman Chonacky Back to the Future? . . . . . . . . . . 3--4
Greg Wilson Those Who Will Not Learn From History
\ldots . . . . . . . . . . . . . . . . . 5--6
Paul F. Dubois Brain Cancer May Be the Least of Our
Worries . . . . . . . . . . . . . . . . 7--8
Cláudio T. Silva and
Joel E. Tohline Computational Provenance . . . . . . . . 9--10
Juliana Freire and
David Koop and
Emanuele Santos and
Cláudio T. Silva Provenance for Computational Tasks: a
Survey . . . . . . . . . . . . . . . . . 11--21
Andrew Dolgert and
Lawrence Gibbons and
Christopher D. Jones and
Valentin Kuznetsov and
Mirek Riedewald and
Daniel Riley and
Gregory J. Sharp and
Peter Wittich Provenance in High-Energy Physics
Workflows . . . . . . . . . . . . . . . 22--29
Erik W. Anderson and
James P. Ahrens and
Katrin Heitmann and
Salman Habib and
Cláudio T. Silva Provenance in Comparative Analysis: a
Study in Cosmology . . . . . . . . . . . 30--37
Simon Miles and
Paul Groth and
Ewa Deelman and
Karan Vahi and
Gaurang Mehta and
Luc Moreau Provenance: The Bridge Between
Experiments and Data . . . . . . . . . . 38--46
Jose Manuel Gómez-Pérez and
Oscar Corcho Problem-Solving Methods for
Understanding Process Executions . . . . 47--52
António Baptista and
Bill Howe and
Juliana Freire and
David Maier and
Cláudio T. Silva Scientific Exploration in the Era of
Ocean Observatories . . . . . . . . . . 53--58
Cosmin Pancratov and
Jacob M. Kurzer and
Kelly A. Shaw and
Matthew L. Trawick Why Computer Architecture Matters . . . 59--63
Javier E. Hasbun How Do Nerve Cells Compute? . . . . . . 64--65
Muhammad Sahimi and
S. Mehdi Vaez Allaei Numerical Simulation of Wave
Propagation, Part I: Sequential
Computing . . . . . . . . . . . . . . . 66--75
Konstantin Läufer A Stroll through Domain-Driven
Development with Naked Objects . . . . . 76--83
Jakub Kurzak and
Alfredo Buttari and
Piotr Luszczek and
Jack Dongarra The PlayStation 3 for High-Performance
Scientific Computing . . . . . . . . . . 84--87
Francis Sullivan I Wandered Lonely as a Cloud . . . . . . 88
Norman Chonacky Ten Years and Counting\ldots . . . . . . 3
Pam Frost Gorder Medical Software has Astronomers Seeing
Stars . . . . . . . . . . . . . . . . . 4--9
Maria Fyta and
Simone Melchionna and
Efthimios Kaxiras and
Sauro Succi Multiscale Simulation of Nanobiological
Flows . . . . . . . . . . . . . . . . . 10--19
Chad Jones and
Kwan-Liu Ma and
Stéphane Ethier and
Wei-Li Lee An Integrated Exploration Approach to
Visualizing Multivariate Particle Data 20--29
Chuan Zhou and
Xiaogang Jin and
Charlie C. L. Wang Efficient and Stable Simulation of Cloth
Undergoing Large Rotations . . . . . . . 30--40
Raquel S. Macedo and
Marcelo F. Alfradique and
Marcelo Castier Automatic Generation of Matlab Functions
Using Mathematica and Thermath . . . . . 41--49
Natividad Duro and
Raquel Dormido and
Héctor Vargas and
Sebastián Dormido-Canto and
José Sánchez and
Gonzalo Farias and
Francisco Esquembre and
Sebastián Dormido An Integrated Virtual and Remote Control
Lab: The Three-Tank System as a Case
Study . . . . . . . . . . . . . . . . . 50--59
Mohamed Sayeed and
Hansang Bae and
Yili Zheng and
Brian Armstrong and
Rudolf Eigenmann and
Faisal Saied Measuring High-Performance Computing
with Real Applications . . . . . . . . . 60--70
Cosmin Pancratov and
Jacob M. Kurzer and
Kelly A. Shaw and
Matthew L. Trawick Why Computer Architecture Matters:
Memory Access . . . . . . . . . . . . . 71--75
Muhammad Sahimi and
S. Mehdi Vaez Allaei Numerical Simulation of Wave
Propagation, Part II: Parallel Computing 76--83
Joel E. Tohline Where Is My Digital Holographic Display? 84--85
Alexander Pletzer and
Douglas McCune and
Stefan Muszala and
Srinath Vadlamani and
Scott Kruger Exposing Fortran Derived Types to C and
Other Languages . . . . . . . . . . . . 86--92
Paul F. Dubois Goodbye to All That . . . . . . . . . . 93--95
Charles Day From First Principles---Gauging the
Web's Impact on Scientific Journals . . 96
Norman Chonacky Coming to a Digital Library Near You . . 3--4
Stephen Weppner Computational Methods with Depth and
Flair . . . . . . . . . . . . . . . . . 5--8
Scott Lathrop and
Thomas Murphy High-Performance Computing Education . . 9--11
Steven I. Gordon and
Kate Carey and
Ignatios Vakalis A Shared, Interinstitutional
Undergraduate Minor Program in
Computational Science . . . . . . . . . 12--16
Gerhard Klimeck and
Michael McLennan and
Sean P. Brophy and
George B. Adams III and
Mark S. Lundstrom nanoHUB.org: Advancing Education and
Research in Nanotechnology . . . . . . . 17--23
Robert F. Tinker and
Qian Xie Applying Computational Science to
Education: The Molecular Workbench
Paradigm . . . . . . . . . . . . . . . . 24--27
Deana D. Pennington and
William K. Michener and
Samantha Katz and
Laura L. Downey and
Mark Schildhauer Transforming Scientists through
Technical Education: a View from the
Trenches . . . . . . . . . . . . . . . . 28--33
Shawn C. Sendlinger and
Don J. DeCoste and
Thom H. Dunning and
Diana Avalos Dummitt and
Eric Jakobsson and
Dave R. Mattson and
Edee Norman Wiziecki Transforming Chemistry Education through
Computational Science . . . . . . . . . 34--39
David Joiner and
Charles Peck and
Thomas Murphy and
Paul Gray Education, Outreach, and Training for
High-Performance Computing . . . . . . . 40--45
Ahmed K. Elmagarmid and
Arjmand Samuel and
Mourad Ouzzani Community-Cyberinfrastructure-Enabled
Discovery in Science and Engineering . . 46--53
Hamid Reza Naji Solving Complex Computational Problems
Using Multiagents Implemented in
Hardware . . . . . . . . . . . . . . . . 54--63
Elena Villalon High-Dimensionality Data Reduction with
Java . . . . . . . . . . . . . . . . . . 64--69
Peter Messmer and
Paul J. Mullowney and
Brian E. Granger GPULib: GPU Computing in High-Level
Languages . . . . . . . . . . . . . . . 70--73
Cosmin Pancratov and
Jacob M. Kurzer and
Kelly A. Shaw and
Matthew L. Trawick Why Computer Architecture Matters:
Thinking through Trade-offs in Your Code 74--79
Francis Sullivan This Time for Sure . . . . . . . . . . . 80
Norman Chonacky Ave Atque Vale . . . . . . . . . . . . . 3--5
Pam Frost Gorder Coming Soon: Research in a Cloud . . . . 6--10
Timothy P. Chartier A Googol of Information about Google . . 11--12
Volodymyr Kindratenko and
George K. Thiruvathukal and
Steven Gottlieb High-Performance Computing Applications
on Novel Architectures . . . . . . . . . 13--15
Paul R. Woodward and
Jagan Jayaraj and
Pei-Hung Lin and
Pen-Chung Yew Moving Scientific Codes to Multicore
Microprocessor CPUs . . . . . . . . . . 16--25
Ivan S. Ufimtsev and
Todd J. Martinez Graphical Processing Units for Quantum
Chemistry . . . . . . . . . . . . . . . 26--34
Martin C. Herbordt and
Yongfeng Gu and
Tom VanCourt and
Josh Model and
Bharat Sukhwani and
Matt Chiu Computing Models for FPGA-Based
Accelerators . . . . . . . . . . . . . . 35--45
Gottfried Goldrian and
Thomas Huth and
Benjamin Krill and
Jack Lauritsen and
Heiko Schick and
Ibrahim Ouda and
Simon Heybrock and
Dieter Hierl and
Thilo Maurer and
Nils Meyer and
Andreas Schafer and
Stefan Solbrig and
Thomas Streuer and
Tilo Wettig and
Dirk Pleiter and
Karl-Heinz Sulanke and
Frank Winter and
Hubert Simma and
Sebastiano Fabio Schifano and
Raffaele Tripiccione and
Andrea Nobile and
Matthias Drochner and
Thomas Lippert and
Zoltan Fodor QPACE: Quantum Chromodynamics Parallel
Computing on the Cell Broadband Engine 46--54
David Matthews and
Greg Wilson and
Steve Easterbrook Configuration Management for Large-Scale
Scientific Computing at the UK Met
Office . . . . . . . . . . . . . . . . . 56--64
Ani R. Thakar Lessons Learned from the SDSS Catalog
Archive Server . . . . . . . . . . . . . 65--71
Michael A. Gray Sage: a New Mathematics Software System 72--75
George K. Thiruvathukal and
Konstantin Laufer What I Did on My Summer Vacation . . . . 76--81
Fabio F. Bernardon and
Linh K. Ha and
Steven P. Callahan and
Joao L. D. Comba and
Claudio T. Silva Transfer-Function Specification for
Rendering Disparate Volumes . . . . . . 82--89
Ras B. Pandey and
Kelly L. Anderson and
Barry L. Farmer Sheets: Entropy Dissipation, Multiscale
Dynamics, Dispersion, and Intercalation 90--98
Daniel Tofan Drawing Chemical Equipment with Adobe
Illustrator, Part 1: Basic Drawing and
Selection Tools . . . . . . . . . . . . 100--102
Charles Day Software Makes Hardware . . . . . . . . 104
Anonymous Annual Index . . . . . . . . . . . . . . ??
Isabel Beichl Begin at the Beginning . . . . . . . . . 3
Sergey Fomel and
Jon F. Claerbout Guest Editors' Introduction:
Reproducible Research . . . . . . . . . 5--7
David L. Donoho and
Arian Maleki and
Inam Ur Rahman and
Morteza Shahram and
Victoria Stodden Reproducible Research in Computational
Harmonic Analysis . . . . . . . . . . . 8--18
Randall J. LeVeque Python Tools for Reproducible Research
on Hyperbolic Problems . . . . . . . . . 19--27
Roger D. Peng and
Sandrah P. Eckel Distributed Reproducible Research Using
Cached Computations . . . . . . . . . . 28--34
Victoria Stodden The Legal Framework for Reproducible
Scientific Research: Licensing and
Copyright . . . . . . . . . . . . . . . 35--40
Roberto Olivares-Amaya and
Romelia Salomon-Ferrer and
William A. Lester Jr. and
Carlos Amador-Bedolla Creating a GUI for Zori, a Quantum Monte
Carlo Program . . . . . . . . . . . . . 41--47
Francesco Belletti and
Maria Cotallo and
Andres Cruz and
Luis Antonio Fernandez and
Antonio Gordillo-Guerrero and
Marco Guidetti and
Andrea Maiorano and
Filippo Mantovani and
Enzo Marinari and
Victor Martin-Mayor and
Antonio Munoz-Sudupe and
Denis Navarro and
Giorgio Parisi and
Sergio Perez-Gaviro and
Mauro Rossi and
Juan Jesus Ruiz-Lorenzo and
Sebastiano Fabio Schifano and
Daniele Sciretti and
Alfonso Tarancon and
Raffaele (lele) Tripiccione and
Jose Luis Velasco and
David Yllanes and
Gianpaolo Zanier Janus: An FPGA-Based System for
High-Performance Scientific Computing 48--58
Daniel Tofan Drawing Chemical Equipment with Adobe
Illustrator, Part 2: Creating and
Modifying Shapes . . . . . . . . . . . . 59--61
Mark Sich Interactive Holography: Pursuit of a
Dream . . . . . . . . . . . . . . . . . 62--65
Mohammad Saadatfar Computer Simulation of Granular
Materials . . . . . . . . . . . . . . . 66--74
Julie Mullen and
Nadya Bliss and
Robert Bond and
Jeremy Kepner and
Hahn Kim and
Albert Reuther High-Productivity Software Development
with pMatlab . . . . . . . . . . . . . . 75--79
Francis Sullivan That Was Then, This Is Now . . . . . . . 80
Isabel Beichl We'll Take Care of All Your Problems . . 3--4
Anonymous Special Thanks to CiSE's Peer Reviewers 5
Jeffrey C. Carver First International Workshop on Software
Engineering for Computational Science &
Engineering . . . . . . . . . . . . . . 7--11
Michael Jay Schillaci Total Tomography . . . . . . . . . . . . 12--13
Alan C. Calder and
Richard T. Kouzes Advances in Computational Astrophysics 15--17
Dean M. Townsley Treating Unresolvable Flame Physics in
Simulations of Thermonuclear Supernovae 18--23
Ann S. Almgren and
John B. Bell and
Andy Nonaka and
Michael Zingale A New Low Mach Number Approach in
Astrophysics . . . . . . . . . . . . . . 24--33
Eric S. Myra and
F. Douglas Swesty and
Dennis C. Smolarski Stellar Core Collapse: a Case Study in
the Design of Numerical Algorithms for
Scalable Radiation Hydrodynamics . . . . 34--44
Enrico Vesperini and
David M. Goldberg and
Stephen L. W. McMillan and
James Dura and
Douglas Jones The Beowulf Analysis Symbolic INterface:
Interactive Parallel Data Analysis for
Everyone . . . . . . . . . . . . . . . . 45--51
George Stantchev and
Derek Juba and
William Dorland and
Amitabh Varshney Using Graphics Processors for
High-Performance Computation and
Visualization of Plasma Turbulence . . . 52--59
Daniel Tofan Drawing Chemical Equipment with Adobe
Illustrator, Part 3: Gradients,
Retouching, and More Objects . . . . . . 60--61
Konstantin Laufer and
George K. Thiruvathukal and
Ryohei Nishimura and
Carlos Ramirez Martinez-Eiroa Putting a Slug to Work . . . . . . . . . 62--68
Jianwei Ma and
Gerlind Plonka Computing with Curvelets: From Image
Processing to Turbulent Flows . . . . . 72--80
Carlos A. Dietrich and
Carlos E. Scheidegger and
Joao L. D. Comba and
Luciana P. Nedel and
Claudio T. Silva Marching Cubes without Skinny Triangles 82--87
Charles Day ``Compute? No, Mr. Bond, I Expect You to
Die!'' . . . . . . . . . . . . . . . . . 88
Douglass Post The Promise of Science-Based
Computational Engineering . . . . . . . 3--4
Jonathan E. Guyer and
Daniel Wheeler and
James A. Warren FiPy: Partial Differential Equations
with Python . . . . . . . . . . . . . . 6--15
Wen-Mei Hwu and
Christopher Rodrigues and
Shane Ryoo and
John Stratton Compute Unified Device Architecture
Application Suitability . . . . . . . . 16--26
Yang Zhang and
Edward Luke Concurrent Composition Using Loci . . . 27--35
Hector Vargas and
Jose Sanchez-Moreno and
Sebastian Dormido and
Christophe Salzmann and
Denis Gillet and
Francisco Esquembre Web-Enabled Remote Scientific
Environments . . . . . . . . . . . . . . 36--46
Hong Tang and
Yusheng Dou and
Mingze Bai Molecular Response to Ultrashort Laser
Pulses . . . . . . . . . . . . . . . . . 47--53
Volodymyr Kindratenko Novel Computing Architectures . . . . . 54--57
Joel Falcou Parallel Programming with Skeletons . . 58--63
Peter A. Knipp and
S. Raj Chaudhury Postprocessing in Automated Grading
Systems, Part 1 . . . . . . . . . . . . 64--67
Joel E. Tohline and
Jinghya Ge and
Wesley Even and
Erik Anderson A Customized Python Module for CFD Flow
Analysis within VisTrails . . . . . . . 68--73
Isabel Beichl and
Francis Sullivan Cut It Out! . . . . . . . . . . . . . . 74--79
Norman Chonacky A Modern Tower of Babel . . . . . . . . 80
Jim X. Chen A Personal Reflection . . . . . . . . . 3
Rubin Landau and
Jose E. Castillo Computational Science Research and
Graduate Studies at San Diego State
University . . . . . . . . . . . . . . . 5
Norman Chonacky Computation in Modern Physics . . . . . 6--7
George K. Thiruvathukal Introducing Computing Now . . . . . . . 8--10
Francis Sullivan Guest Editor's Introduction: Cloud
Computing for the Sciences . . . . . . . 10--11
James L. Johnson SQL in the Clouds . . . . . . . . . . . 12--28
Jonathan Cohen Graph Twiddling in a MapReduce World . . 29--41
Thomas Sterling and
Dylan Stark A High-Performance Computing Forecast:
Partly Cloudy . . . . . . . . . . . . . 42--49
Stergios Papadimitriou and
Konstantinos Terzidis and
Seferina Mavroudi and
Spiridon Likothanassis Scientific Scripting for the Java
Platform with jLab . . . . . . . . . . . 50--60
Michael A. Gray Getting Started with GPU Programming . . 61--64
Mahyar Madadi and
Anthony C. Jones and
Christoph H. Arns and
Mark A. Knackstedt $3$D Imaging and Simulation of Elastic
Properties of Porous Materials . . . . . 65--73
You-Zhou Xie and
Lin Yang and
Li-Fen Chen and
Pei-Dong Dai and
Tian-Yu Zhang and
Jim X. Chen and
Zheng-Min Wang A Virtual Platform for Auditory Organ
Mechanics Analysis . . . . . . . . . . . 74--80
Peter A. Knipp and
S. Raj Chaudhury Postprocessing in Automated Grading
Systems, Part 2 . . . . . . . . . . . . 82--85
Konrad Hinsen The Promises of Functional Programming 86--90
Paul Henning and
Andrew B. White, Jr. Trailblazing with Roadrunner . . . . . . 91--95
Charles Day Vets 1, Docs 1 . . . . . . . . . . . . . 96
Isabel Beichl Where the Rubber Meets the Road . . . . 3
William H. Press That Perfect Algorithm for Any Occasion 5--6
Thom H. Dunning Guest Editor's Introduction: Science and
Engineering on Petascale Computers . . . 7--9
Peter M. Kogge The Challenges of Petascale
Architectures . . . . . . . . . . . . . 10--16
William D. Gropp Software for Petascale Computing Systems 17--21
Sharon C. Glotzer and
Bob Panoff and
Scott Lathrop Challenges and Opportunities in
Preparing Students for Petascale
Computational Science and Engineering 22--27
Thom H. Dunning and
Klaus Schulten and
Jeroen Tromp and
Jeremiah P. Ostriker and
Kelvin Droegemeier and
Ming Xue and
Paul Fussell Science and Engineering in the Petascale
Era . . . . . . . . . . . . . . . . . . 28--37
Daniel Muller and
Bernhard Fleck and
George Dimitoglou and
Benjamin W. Caplins and
Desmond E. Amadigwe and
Juan Pablo Garcia Ortiz and
Benjamin Wamsler and
Alen Alexanderian and
V. Keith Hughitt and
Jack Ireland JHelioviewer: Visualizing Large Sets of
Solar Images Using JPEG 2000 . . . . . . 38--47
Diane Kelly and
Daniel Hook and
Rebecca Sanders Five Recommended Practices for
Computational Scientists Who Write
Software . . . . . . . . . . . . . . . . 48--53
Ernst Mucke Quickhull: Computing Convex Hulls
Quickly . . . . . . . . . . . . . . . . 54--57
Jonathan Cohen and
Michael Garland Solving Computational Problems with GPU
Computing . . . . . . . . . . . . . . . 58--63
Peter A. Knipp and
S. Raj Chaudhury Postprocessing in Automated Grading
Systems, Part 3 . . . . . . . . . . . . 64--67
Konstantin Laufer and
George K. Thiruvathukal The Promises of Typed, Pure, and Lazy
Functional Programming: Part II . . . . 68--75
Gerassimos Orkoulas An Overview of Monte Carlo Methods for
Fluid Simulation . . . . . . . . . . . . 76--87
Attila Gyulassy and
Luis Gustavo Nonato and
Peer-Timo Bremer and
Claudio Silva and
Valerio Pascucci Robust Topology-Based Multiscale
Analysis of Scientific Data . . . . . . 88--95
Charles Day Advice from Uncle Charles . . . . . . . 96
Hans-Joachim Bungartz and
Donald Estep and
Ulrich Rude and
Peter Turner Computational Science and Engineering
Education: SIAM's Perspective . . . . . 5--11
George K. Thiruvathukal Computational Thinking --- and Doing . . 4
Greg Wilson and
Andrew Lumsdaine Software Engineering and Computational
Science . . . . . . . . . . . . . . . . 12--13
Jeffrey C. Carver Report: The Second International
Workshop on Software Engineering for CSE 14--19
Sarah Killcoyne and
John Boyle Managing Chaos: Lessons Learned
Developing Software in the Life Sciences 20--29
Stuart Faulk and
Eugene Loh and
Michael L. Van De Vanter and
Susan Squires and
Lawrence G. Votta Scientific Computing's Productivity
Gridlock: How Software Engineering Can
Help . . . . . . . . . . . . . . . . . . 30--39
Daniel Hook and
Diane Kelly Mutation Sensitivity Testing . . . . . . 40--47
Steven L. Eddins Automated Software Testing for Matlab 48--55
Field G. Van Zee and
Ernie Chan and
Robert A. van de Geijn and
Enrique S. Quintana-Orti and
Gregorio Quintana-Orti The \tt libflame Library for Dense
Matrix Computations . . . . . . . . . . 56--63
Steve M. Easterbrook and
Timothy C. Johns Engineering the Software for
Understanding Climate Change . . . . . . 65--74
Thomas C. McMail Next-Generation Research and
Breakthrough Innovation . . . . . . . . 76--84
Charles Day Lessons from Little Dorrit . . . . . . . 104
Konrad Hinsen and
Konstantin Laufer and
George K. Thiruvathukal Essential Tools: Version Control Systems 84--91
Amr Bayoumi and
Michael Chu and
Yasser Hanafy and
Patricia Harrell and
Gamal Refai-Ahmed Scientific and Engineering Computing
Using ATI Stream Technology . . . . . . 92--97
Werner Benger On Safari in the File Format Jungle ---
Why Can't You Visualize My Data? . . . . 98--102
Larry Engelhardt Descriptions and Comparisons of Monte
Carlo Algorithms . . . . . . . . . . . . 103
Anonymous Annual Index . . . . . . . . . . . . . . 0
Isabel Beichl Ephemera . . . . . . . . . . . . . . . . 3
Pam Frost Gorder Computational Epidemiology . . . . . . . 4--6
Jim X. Chen Geographic Information Systems . . . . . 8--9
Jianrong Fan and
Jim X. Chen and
Bingwei Tian and
Dong Yan and
Genwei Cheng and
Peng Cui and
Wen Zhang Rapid Assessment of Secondary Disasters
Induced by the Wenchuan Earthquake . . . 10--19
Xiang Guo and
Dong Yan and
Jianrong Fan and
Wanze Zhu and
Mai-He Li Using GIS and Fuzzy Sets to Evaluate the
Olive Tree's Ecological Suitability in
Sichuan Province . . . . . . . . . . . . 20--27
Siyuan Liu and
Gaojin Wen and
Jianping Fan A $3$D Geosciences Modeling System for
Large-Scale Water-Diversion Projects . . 28--35
Xiaobo Jiang and
Wei Ji and
Hongcheng Zeng and
Leiting Chen Using GIS to Quantify Mountains in China 36--43
Jalal M. Fadili and
Jean-Luc Starck and
Michael Elad and
David L. Donoho MCALab: Reproducible Research in Signal
and Image Decomposition and Inpainting 44--63
Arnab Das and
Anjan K. Chandra and
Bikas K. Chakrabarti A Zero-Temperature Quantum Monte Carlo
Algorithm and Quantum Spin Glasses . . . 64--72
Francis Sullivan Whip Until Solved . . . . . . . . . . . 73--75
Guochun Shi and
Volodymyr Kindratenko and
Frederico Pratas and
Pedro Trancoso and
Michael Gschwind Application Acceleration with the Cell
Broadband Engine . . . . . . . . . . . . 76--81
Claudio Silva and
David Ebert and
Hanspeter Pfister and
Sheelagh Carpendale An Update from VisWeek 2009 . . . . . . 82--87
Thomas J. Bensky and
Catherine A. Taff Computer-Guided Solutions to Physics
Problems Using Prolog . . . . . . . . . 88--95
Charles Day My CiSEiest Stories . . . . . . . . . . 96
Isabel Beichl You Say You Want a Revolution . . . . . 5
Rubin Landau and
Steven Gottlieb Advancing the Cause of Computation in
the Physics Curriculum . . . . . . . . . 6--7
Max Hailperin Books . . . . . . . . . . . . . . . . . 8--11
Alejandro Strachan and
Gerhard Klimeck and
Mark Lundstrom Cyber-Enabled Simulations in Nanoscale
Science and Engineering . . . . . . . . 12--17
Yosuke Kanai and
Jeffrey B. Neaton and
Jeffrey C. Grossman Theory and Simulation of Nanostructured
Materials for Photovoltaic Applications 18--27
Gerhard Klimeck and
Mathieu Luisier Atomistic Modeling of Realistically
Extended Semiconductor Devices with NEMO
and OMEN . . . . . . . . . . . . . . . . 28--35
Yumi Park and
Ya Zhou and
Janam Jhaveri and
Alejandro Strachan Molecular Dynamics Simulations of Strain
Engineering and Thermal Transport in
Nanostructured Materials . . . . . . . . 36--42
Reza Toghraee and
Kyu-Il Lee and
Umberto Ravaioli Simulation of Ion Permeation in
Biological Membranes . . . . . . . . . . 43--47
Michael McLennan and
Rick Kennell HUBzero: a Platform for Dissemination
and Collaboration in Computational
Science and Engineering . . . . . . . . 48--53
Yu-Cheng Chou and
Stephen S. Nestinger and
Harry H. Cheng Ch MPI: Interpretive Parallel Computing
in C . . . . . . . . . . . . . . . . . . 54--67
Francesc Alted Why Modern CPUs Are Starving and What
Can Be Done about It . . . . . . . . . . 68--71
Steven Barrett and
Daniel Pack Textbooks 101 . . . . . . . . . . . . . 72--77
Craig Steffen and
Gildas Genest Nallatech In-Socket FPGA Front-Side Bus
Accelerator . . . . . . . . . . . . . . 78--83
Fatemeh Ebrahimi Invasion Percolation: a Computational
Algorithm for Complex Phenomena . . . . 84--93
Anonymous Special Thanks to CiSE's Peer Reviewers 94--95
Francis Sullivan The Shape of Things to Come . . . . . . 96
Isabel Beichl Good Policy Makes Good Science . . . . . 5
David D. Meisel Bringing Computation to the Classroom 6--11
Douglass E. Post Computational Engineering: Its Promise
and Challenges . . . . . . . . . . . . . 12--13
Loren K. Miller Simulation-Based Engineering for
Industrial Competitive Advantage . . . . 14--21
Richard P. Kendall and
Andrew Mark and
Susan E. Squires and
Christine A. Halverson Condor: Case Study of a Large-Scale,
Physics-Based Code Development Project 22--27
Richard P. Kendall and
Douglass E. Post and
Andrew Mark Case Study of the Nene Code Project . . 28--33
John J. Rehr and
Fernando D. Vila and
Jeffrey P. Gardner and
Lucas Svec and
Micah Prange Scientific Computing in the Cloud . . . 34--43
Yonggao Yang and
Jian-ao Lian Making $3$D Object Surfaces Smoother . . 44--51
Xiaoyu Yang and
Richard P. Bruin and
Martin T. Dove Developing an End-to-End Scientific
Workflow . . . . . . . . . . . . . . . . 52--61
Kaveh R. Ghazi and
Vincent Lefevre and
Philippe Theveny and
Paul Zimmermann Why and How to Use Arbitrary Precision 5
John E. Stone and
David Gohara and
Guochun Shi OpenCL: a Parallel Programming Standard
for Heterogeneous Computing Systems . . 66--73
Denis Donnelly Elliptic Trainer Wattage: Fitting to
Find a Function . . . . . . . . . . . . 74--77
Joel E. Tohline and
Emanuele Santos Visualizing a Journal that Serves the
Computational Sciences Community . . . . 78--81
Charles Day My Petaflops Challenge . . . . . . . . . 82
George K. Thiruvathukal Your Local Cloud-Enabled Library . . . . 5--6
Anonymous Books . . . . . . . . . . . . . . . . . 7--11
Volodymyr Kindratenko and
Robert Wilhelmson and
Robert Brunner and
Todd J. Martinez and
Wen-mei Hwu High-Performance Computing with
Accelerators . . . . . . . . . . . . . . 12--16
Adrian Pope and
Salman Habib and
Zarija Lukic and
David Daniel and
Patricia Fasel and
Nehal Desai and
Katrin Heitmann The Accelerated Universe . . . . . . . . 17--25
Rory Kelly GPU Computing for Atmospheric Modeling 26--33
Peter Eastman and
Vijay Pande OpenMM: a Hardware-Independent Framework
for Molecular Simulations . . . . . . . 34--39
Mark Watson and
Roberto Olivares-Amaya and
Richard G. Edgar and
Alan Aspuru-Guzik Accelerating Correlated Quantum
Chemistry Calculations Using Graphical
Processing Units . . . . . . . . . . . . 40--51
George K. Thiruvathukal and
Konrad Hinsen and
Konstantin Laufer and
Joe Kaylor Virtualization for Computational
Scientists . . . . . . . . . . . . . . . 52--61
Steven F. Barrett and
Mitchell A. Thornton To PE or not to PE: the Sequel . . . . . 62--65
Todd C. Scofield and
Jeffrey A. Delmerico and
Vipin Chaudhary and
Geno Valente XtremeData dbX: An FPGA-Based Data
Warehouse Appliance . . . . . . . . . . 66--73
Muhammad Sahimi and
Hossein Hamzehpour Efficient Computational Strategies for
Solving Global Optimization Problems . . 74--83
Mohankumar Nandagopal and
Soubhadra Sen and
Ajay Rawat A Note on the Error Function . . . . . . 84--88
Erik W. Anderson and
Gilbert A. Preston and
Claudio T. Silva Using Python for Signal Processing and
Visualization . . . . . . . . . . . . . 90--95
Charles Day Chihuahua Jackets, Lego Weapons, and
Vintage Bags . . . . . . . . . . . . . . 96
Isabel Beichl Revitalizing Work in CiSE . . . . . . . 4--4
Dave Bacon Books . . . . . . . . . . . . . . . . . 5--7
Anonymous Reproducible Research . . . . . . . . . 8--13
Jeanie Osburn and
Aram Kevorkian and
Balu Sekar Defense Applications . . . . . . . . . . 14--17
Steven Ellison and
John Dean and
Michael Johnson and
Cindy Prebola and
Charles Fabozzi and
Alexis Cenko Supplying Air Warfare Capability Through
High-Performance Computing . . . . . . . 18--26
Roger Strawn High-Performance Computing for
Rotorcraft Modeling and Simulation . . . 27--35
Tim Campbell and
Richard Allard and
Ruth Preller and
Lucy Smedstad and
Alan Wallcraft and
Sue Chen and
Hao Jin and
Sasa Gabersek and
Richard Hodur and
Joseph Reich Integrated Modeling of the Battlespace
Environment . . . . . . . . . . . . . . 36--45
Anders Wallqvist and
Nela Zavaljevski and
Ravi Vijaya Satya and
Rajkumar Bondugula and
Valmik Desai and
Xin Hu and
Kamal Kumar and
Michael Lee and
In-Chul Yeh and
Chenggang Yu Accelerating Biomedical Research in
Designing Diagnostic Assays, Drugs, and
Vaccines . . . . . . . . . . . . . . . . 46--55
David Horner and
Owen Eslinger and
Stacy Howington and
Steve Ketcham and
John Peters and
Jerry Ballard Integrated High-Fidelity Geoscience
Simulations for Enhanced Terrain-Related
Target Detection . . . . . . . . . . . . 56--63
Jianguo Xin and
Larisa Beilina and
Michael Klibanov Globally Convergent Numerical Methods
for Some Coefficient Inverse Problems 64--77
Jinghua Ge and
Andrei Hutanu and
Cornelius Toole and
Robert Kooima and
Imtiaz Hossain and
Gabrielle Allen An Experimental Distributed
Visualization System for Petascale
Computing . . . . . . . . . . . . . . . 78--83
Marc Poinot Five Good Reasons to Use the
Hierarchical Data Format . . . . . . . . 84--90
Xin Jin and
Mikel Lujan and
Luis A. Plana and
Sergio Davies and
Steve Temple and
Steve B. Furber Modeling Spiking Neural Networks on
SpiNNaker . . . . . . . . . . . . . . . 91--97
Cameron H. G. Wright Technical Writing Tools for Engineers
and Scientists . . . . . . . . . . . . . 98--103
Charles Day We're All Celebrities Now . . . . . . . 104
Isabel Beichl Dystopia . . . . . . . . . . . . . . . . 4
Steven P. Lewis A How-to Guide for Predicting Properties
of Materials with DFT . . . . . . . . . 5--7
Scott Hemmert Green HPC: From Nice to Necessity . . . 8--10
Dale Sartor and
Mark Wilson Money for Research, Not Energy Bills:
Finding Energy and Cost Savings in
High-Performance Computer Facility
Designs . . . . . . . . . . . . . . . . 11--19
David Jensen and
Arun Rodrigues Embedded Systems and Exascale Computing 20--29
Torsten Hoefler Software and Hardware Techniques for
Power-Efficient HPC Networking . . . . . 30--37
Richard Murphy and
Thomas Sterling and
Chirag Dekate Advanced Architectures and Execution
Models to Support Green Computing . . . 38--47
Oliver Rohrle Simulating the Electro-Mechanical
Behavior of Skeletal Muscles . . . . . . 48--58
Francis Sullivan The Art of Approximation . . . . . . . . 59--61
Marc Tajchman Programming Experiences Using the X10
Language . . . . . . . . . . . . . . . . 62--69
Steven Barrett and
Cameron H. G. Wright For Students By Students . . . . . . . . 70--73
Yongquan Jiang and
Li Chen and
Qishu Chen and
Qiang Peng and
Jim X. Chen Computing Discrete Minimal Surfaces
Using a Nonlinear Spring Model . . . . . 74--79
Jason D. Bakos High-Performance Heterogeneous Computing
with the Convey HC-1 . . . . . . . . . . 80--87
Charles Day Fixing Internet Advertising: What Would
Donald Draper Do? . . . . . . . . . . . 88
Isabel Beichl Changes . . . . . . . . . . . . . . . . 4
George K. Thiruvathukal An Exceptionally Useful Exploration . . 5--8
Fuqing Zhang The Future of Hurricane Prediction . . . 9--12
Xuejin Zhang and
Thiago Quirino and
Kao-San Yeh and
Sundararaman Gopalakrishnan and
Frank Marks and
Stanley Goldenberg and
Sim Aberson HWRFx: Improving Hurricane Forecasts
with High-Resolution Modeling . . . . . 13--21
Christopher Davis and
Wei Wang and
Steven Cavallo and
James Done and
Jimy Dudhia and
Sherrie Fredrick and
John Michalakes and
Ginger Caldwell and
Thomas Engel and
Ryan Torn High-Resolution Hurricane Forecasts . . 22--30
James Doyle and
Carolyn Reynolds and
Clark Amerault Diagnosing Tropical Cyclone Sensitivity 31--39
Yonghui Weng and
Meng Zhang and
Fuqing Zhang Advanced Data Assimilation for
Cloud-Resolving Hurricane Initialization
and Prediction . . . . . . . . . . . . . 40--49
Dilip Gayen and
Arunava Bhattacharyya and
Rajat Pal and
Jitendra Nath Roy All-Optical Binary-Coded Decimal Adder
with a Terahertz Optical Asymmetric
Demultiplexer . . . . . . . . . . . . . 50--57
Mohankumar Nandagopal On the Evaluation of Correction Terms of
Gaussian Integration . . . . . . . . . . 58--61
Yann Pouillon and
Jean-Michel Beuken and
Thierry Deutsch and
Marc Torrent and
Xavier Gonze Organizing Software Growth and
Distributed Development: The Case of
Abinit . . . . . . . . . . . . . . . . . 62--69
Steven F. Barrett Mentoring and Making a Difference: What
Can One Person Do? . . . . . . . . . . . 70--73
Jose S. Andrade, Jr. and
Saulo D. S. Reis and
Erneson A. Oliveira and
Eric Fehr and
Hans J. Herrmann Ubiquitous Fractal Dimension of Optimal
Paths . . . . . . . . . . . . . . . . . 74--81
Alan George and
Herman Lam and
Greg Stitt Novo-G: At the Forefront of Scalable
Reconfigurable Supercomputing . . . . . 82--86
Anonymous Special Thanks to CiSE's Peer Reviewers 87
Charles Day Computational Thinking Is Becoming One
of the Three Rs . . . . . . . . . . . . 88
Isabel Beichl Watchful Waiting . . . . . . . . . . . . 3--4
Anonymous Books . . . . . . . . . . . . . . . . . 5--8
K. Jarrod Millman and
Michael Aivazis Python for Scientists and Engineers . . 9--12
Fernando Perez and
Brian E. Granger and
John D. Hunter Python: An Ecosystem for Scientific
Computing . . . . . . . . . . . . . . . 13--21
Stefan van der Walt and
S. Chris Colbert and
Gael Varoquaux The NumPy Array: a Structure for
Efficient Numerical Computation . . . . 22--30
Stefan Behnel and
Robert Bradshaw and
Craig Citro and
Lisandro Dalcin and
Dag Sverre Seljebotn and
Kurt Smith Cython: The Best of Both Worlds . . . . 31--39
Prabhu Ramachandran and
Gael Varoquaux Mayavi: $3$D Visualization of Scientific
Data . . . . . . . . . . . . . . . . . . 40--51
Ming Liu A High-End Reconfigurable Computation
Platform for Nuclear and Particle
Physics Experiments . . . . . . . . . . 52--63
Massimo Di Pierro \tt web2py for Scientific Applications 64--69
Carlos Scheidegger and
Claudio T. Silva and
Daniel Weiskopf A Report From VisWeek 2010 . . . . . . . 70--77
Andy R. Terrel From Equations to Code: Automated
Scientific Computing . . . . . . . . . . 78--82
Mike Showerman and
Jeremy Enos and
Craig Steffen and
Sean Treichler and
William Gropp and
Wen-mei W. Hwu EcoG: a Power-Efficient GPU Cluster
Architecture for Scientific Computing 83--87
Charles Day Buying a House, Then and Now . . . . . . 88
George K. Thiruvathukal Beyond CiSE and Back to the Future . . . 4--5
Aura Conci and
Angel Sanchez Scientific Image Processing . . . . . . 6--8
Luiz Oliveira and
Marcelo Mansano and
Alessandro Koerich and
Alceu de Souza Britto, Jr. $2$D Principal Component Analysis for
Face and Facial-Expression Recognition 9--13
Denis Salvadeo and
Nelson Mascarenhas and
Jander Moreira and
Alexandre Levada and
Debora C. Correa Improving Face Recognition Performance
Using RBPCA MaxLike and Information
Fusion . . . . . . . . . . . . . . . . . 14--21
Juan-Bernardo Gomez-Mendoza and
Flavio Prieto and
Tanneguy Redarce Automatic Lip-Contour Extraction and
Mouth-Structure Segmentation in Images 22--30
Raul Queiroz Feitosa and
Dario Augusto Borges Oliveira and
Alvaro de Lima Veiga-Filho and
Raphael Pithan Brito and
Jose Luiz Buonomo de Pinho and
Antonio Carlos Censi Weighting Estimation for Texture-Based
Face Recognition Using the Fisher
Discriminant . . . . . . . . . . . . . . 31--37
Angel Sanchez and
Pedro D. Suarez and
Aura Conci and
Eldman Nunes Video-Based Distance Traffic Analysis:
Application to Vehicle Tracking and
Counting . . . . . . . . . . . . . . . . 38--45
Karin S. Komati and
Evandro O. T. Salles and
Mario Sarcinelli-Filho KSS: Using Region and Edge Maps to
Detect Image Boundaries . . . . . . . . 46--52
Emmanuel Lambert and
Martin Fiers and
Shavkat Nizamov and
Martijn Tassaert and
Steven G. Johnson and
Peter Bienstman and
Wim Bogaerts Python Bindings for the Open Source
Electromagnetic Simulator Meep . . . . . 53--65
Eric Schulte and
Dan Davison Active Documents with Org-Mode . . . . . 66--73
Reza Sepehrinia and
Ameneh Sheikhan Numerical Simulation of Anderson
Localization . . . . . . . . . . . . . . 74--83
Filip Sadlo and
Markus Üffinger and
Christian Pagot and
Daniel Osmari and
Joao Comba and
Thomas Ertl and
Claus-Dieter Munz and
Daniel Weiskopf Visualization of Cell-Based Higher-Order
Fields . . . . . . . . . . . . . . . . . 84--91
Volodymyr Kindratenko and
Pedro Trancoso Trends in High-Performance Computing . . 92--95
Charles Day The Demise of Borders Group and the
Challenge of Browsing . . . . . . . . . 96, 95
Douglass Post The Future of Computing Performance . . 4--5
Francisco Esquembre There Is Parallel Life for Java
Scientific Programmers! . . . . . . . . 6--10
Rudolf Eigenmann and
Ayhan Irfanoglu Computational Earthquake and Tsunami
Research . . . . . . . . . . . . . . . . 11--13
Ricardo Taborda and
Jacobo Bielak Large-Scale Earthquake Simulation:
Computational Seismology and Complex
Engineering Systems . . . . . . . . . . 14--27
Swaminathan Krishnan and
Matthew Muto and
Ramses Mourhatch and
Arnar Bjorn Bjornsson and
Hemanth Siriki Rupture-to-Rafters Simulations: Unifying
Science and Engineering for Earthquake
Hazard Mitigation . . . . . . . . . . . 28--43
Takuzo Yamashita and
Hori Muneo and
Koichi Kajiwara Petascale Computation for Earthquake
Engineering . . . . . . . . . . . . . . 44--49
Patrick Lynett and
Philip Lui Numerical Simulation of Complex Tsunami
Behavior . . . . . . . . . . . . . . . . 50--57
Frank McKenna OpenSees: a Framework for Earthquake
Engineering Simulation . . . . . . . . . 58--66
Thomas J. Hacker and
Rudi Eigenmann and
Saurabh Bagchi and
Ayhan Irfanoglu and
Santiago Pujol and
Ann Catlin and
Ellen Rathje The NEEShub Cyberinfrastructure for
Earthquake Engineering . . . . . . . . . 67--78
Sergey Andreyev Into the World of Movable Objects . . . 79--84
Thomas Muller and
Daniel Weiskopf Special-Relativistic Visualization . . . 85--93
Gabriel Peyre The Numerical Tours of Signal Processing 94--97
Alexander Utz and
Lutz Gendrisch and
Holger Vogt Simulating Far-Infrared Scenarios with
the Radiance Synthetic Imaging System 98--103
Charles Day Earthquakes, Soft Bombs, and Internet
Vulnerability . . . . . . . . . . . . . 104
Isabel Beichl Top of the Charts . . . . . . . . . . . 4
Martin Weigel The GPU Revolution at Work . . . . . . . 5--6
Diane Kelly and
Spencer Smith and
Nicholas Meng Software Engineering for Scientists . . 7--11
Lena Stromback and
Juliana Freire XML Management for Bioinformatics
Applications . . . . . . . . . . . . . . 12--23
Poonam S. Verma and
Huanmei Wu and
Mark P. Langer and
Indra J. Das and
George Sandison Survey: Real-Time Tumor Motion
Prediction for Image-Guided Radiation
Treatment . . . . . . . . . . . . . . . 24--35
Dali Wang and
Wilfred M. Post and
Bruce E. Wilson Climate Change Modeling: Computational
Opportunities and Challenges . . . . . . 36--42
Stergios Papadimitriou and
Konstantinos Terzidis and
Seferina Mavroudi and
Spiridon Likothanassis ScalaLab: An Effective Scala-Based
Scientific Programming Environment for
Java . . . . . . . . . . . . . . . . . . 43--55
Bo-Wen Shen and
Wei-Kuo Tao and
Bryan Green Coupling Advanced Modeling and
Visualization to Improve High-Impact
Tropical Weather Prediction . . . . . . 56--67
Gabriel Peyre The Numerical Tours of Signal Processing
Part 2: Multiscale Processings . . . . . 68--71
Huy T. Vo and
Joao L. D. Comba and
Berk Geveci and
Claudio T. Silva Streaming-Enabled Parallel Data Flow
Framework in the Visualization ToolKit 72--83
Konstantin Laufer and
George K. Thiruvathukal and
David Dennis Moving Academic Department Functions to
Social Networks and Clouds: Initial
Experiences . . . . . . . . . . . . . . 84--89
Jeffrey S. Vetter and
Richard Glassbrook and
Jack Dongarra and
Karsten Schwan and
Bruce Loftis and
Stephen McNally and
Jeremy Meredith and
James Rogers and
Philip Roth and
Kyle Spafford and
Sudhakar Yalamanchili Keeneland: Bringing Heterogeneous GPU
Computing to the Computational Science
Community . . . . . . . . . . . . . . . 90--95
Charles Day Standards Rule OK . . . . . . . . . . . 96
Isabel Beichl Just Try . . . . . . . . . . . . . . . . 4--5
Anonymous Books . . . . . . . . . . . . . . . . . 6--9
Francis J. Alexander and
Adolfy Hoisie and
Alexander Szalay Big Data . . . . . . . . . . . . . . . . 10--13
James Ahrens and
Bruce Hendrickson and
Gabrielle Long and
Steve Miller and
Rob Ross and
Dean Williams Data-Intensive Science in the US DOE:
Case Studies and Future Challenges . . . 14--24
Randal E. Bryant Data-Intensive Scalable Computing for
Scientific Applications . . . . . . . . 25--33
Alex Szalay Extreme Data-Intensive Scientific
Computing . . . . . . . . . . . . . . . 34--41
Dan Chen and
Lizhe Wang and
Gaoxiang Ouyang and
Xiaoli Li Massively Parallel Neural Signal
Processing on a Many-Core Platform . . . 42--51
Cheng-Kai Chen and
Chris Ho and
Carlos Correa and
Kwan-Liu Ma and
Ahmed Elgamal Visualizing $3$D Earthquake Simulation
Data . . . . . . . . . . . . . . . . . . 52--63
Thomas Muller and
Daniel Weiskopf General-Relativistic Visualization . . . 64--71
Gabriel Peyre The Numerical Tours of Signal Processing
Part 3: Image and Surface Restoration 72--75
Nargess Memarsadeghi and
Brent J. Bos NASA Computational Case Study
Characterizing Moving Particles . . . . 76--78
Matthias Gries and
Ulrich Hoffmann and
Michael Konow and
Michael Riepen SCC: a Flexible Architecture for
Many-Core Platform Research . . . . . . 79--83
Gholamreza Jafari and
Amir Hossein Shirazi and
Ali Namaki and
Reza Raei Coupled Time Series Analysis: Methods
and Applications . . . . . . . . . . . . 84--89
Michael D. Galloy Using the Data Access Protocol with IDL 90--95
Charles Day It's More Fun to Compose . . . . . . . . 96
Anonymous CiSE 2011 Annual Index . . . . . . . . . i--i
Isabel Beichl Of Art and CS Education . . . . . . . . 4
Anonymous Books . . . . . . . . . . . . . . . . . 5--8
Norman Chonacky Crosstalk: Computation as a Language for
Research Conversations among Scientists
and Engineers . . . . . . . . . . . . . 9--11
Christopher Johnson Biomedical Visual Computing: Case
Studies and Challenges . . . . . . . . . 12--21
Anne Matsuura and
Nicola Thrupp and
Xavier Gonze and
Yann Pouillon and
Gaelle Bruant and
Giovanni Onida The ETSF: An e-Infrastructure That
Bridges Simulations and Experiments . . 22--32
Woosong Choi and
Yong S. Chen and
Stefanos Papanikolaou and
James P. Sethna Is Dislocation Flow Turbulent in
Deformed Crystals? . . . . . . . . . . . 33--39
Kenneth P. Esler and
Jeongnim Kim and
David M. Ceperley and
Luke Shulenburger Accelerating Quantum Monte Carlo
Simulations of Real Materials on GPU
Clusters . . . . . . . . . . . . . . . . 40--51
Pilsung Kang and
Naren Ramakrishnan and
Calvin J. Ribbens and
Srinidhi Varadarajan and
Michael Heffner Adaptive Code Collage: a Framework to
Transparently Modify Scientific Codes 52--63
Kai Diethelm The Limits of Reproducibility in
Numerical Simulation . . . . . . . . . . 64--72
Alejandra J. Magana and
Jyoti I. Mathur Motivation, Awareness, and Perceptions
of Computational Science . . . . . . . . 74--79
Konrad Hinsen Managing State . . . . . . . . . . . . . 80--86
Anonymous Computing in Science & Engineering
Commends Volunteer Reviewers . . . . . . 87
Charles Day ``Supercomputers are awesome and why I
love what I DO!!!'' . . . . . . . . . . 88
George K. Thiruvathukal Digging into Data . . . . . . . . . . . 4--5
Alex Small Scientific Python for Both Expert and
Novice Programmers . . . . . . . . . . . 6--7
Jeffrey C. Carver Software Engineering for Computational
Science and Engineering . . . . . . . . 8--11
Ian Gorton and
Chandrika Sivaramakrishnan and
Gary Black and
Signe White and
Sumit Purohit and
Carina Lansing and
Michael Madison and
Karen Schuchardt and
Yan Liu Velo: a Knowledge-Management Framework
for Modeling and Simulation . . . . . . 12--23
Magnus Thorstein Sletholt and
Jo Erskine Hannay and
Dietmar Pfahl and
Hans Petter Langtangen What Do We Know about Scientific
Software Development's Agile Practices? 24--37
Hanna Remmel and
Barbara Paech and
Peter Bastian and
Christian Engwer System Testing a Scientific Framework
Using a Regression-Test Environment . . 38--45
Damian Rouson and
Karla Morris and
Jim Xia This Isn't Your Parents' Fortran:
Managing C++ Objects with Modern Fortran 46--54
Derek Stewart A Cautionary Tale of Two Basis Sets and
Graphene . . . . . . . . . . . . . . . . 55--59
Venkatasubramanian Viswanathan and
Frank Wang and
Heinz Pitsch Monte Carlo-Based Approach for
Simulating Nanostructured Catalytic and
Electrocatalytic Systems . . . . . . . . 60--69
Helmut Doleisch and
Helwig Hauser Interactive Visual Exploration and
Analysis of Multivariate Simulation Data 70--77
Alexander Heinecke and
Michael Klemm and
Hans-Joachim Bungartz From GPGPU to Many-Core: Nvidia Fermi
and Intel Many Integrated Core
Architecture . . . . . . . . . . . . . . 78--83
Jessica Howard and
Omar Padron and
Patricia Morreale and
David Joiner Applications of Computational Science:
Data-Intensive Computing for Student
Projects . . . . . . . . . . . . . . . . 84--89
Dianne P. O'Leary and
Bert W. Rust Light a Single Candle: Studying
Supernovae . . . . . . . . . . . . . . . 90--96
Leili Javidpour Computer Simulations of Protein Folding 97--103
Charles Day Germany's CiSE-Reading Chancellor . . . 104
Isabel Beichl Is My Car Smarter than My Cat? . . . . . 4--5
Javier E. Hasbun Unifying Two
Popular-but-Seemingly-Dissimilar
Platforms: Matlab and Java . . . . . . . 6--7
Volodymyr Kindratenko Scientific Computing with GPUs . . . . . 8--9
Ali Khajeh-Saeed and
J. Blair Perot Computational Fluid Dynamics Simulations
Using Many Graphics Processors . . . . . 10--19
Jiadong Wu and
Chunlei Chen and
Bo Hong A GPU-Based Approach to Accelerate
Computational Protein-DNA Docking . . . 20--29
Rio Yokota and
Lorena A. Barba Hierarchical $N$-body Simulations with
Autotuning for Heterogeneous Systems . . 30--39
Javier Baladron and
Diego Fasoli and
Olivier Faugeras Three Applications of GPU Computing in
Neuroscience . . . . . . . . . . . . . . 40--47
Didem Unat and
Jun Zhou and
Yifeng Cui and
Scott B. Baden and
Xing Cai Accelerating a 43$D$ Finite-Difference
Earthquake Simulation with a C-to-CUDA
Translator . . . . . . . . . . . . . . . 48--59
Marc Joliveau and
Michel Gendreau Using Bilevel Feature Extractors to
Reduce Dimensionality in Images . . . . 60--67
Francisco Javier Casas and
Juan Pablo Pascual and
Luisa de la Fuente and
Eduardo Artal and
Joaquin Portilla Frequency-Domain Identification and
Model-Order Selection for Efficiently
Simulating Microwave Radiometers . . . . 68--77
Stephan Wenger and
Marco Ament and
Wolfgang Steffen and
Nico Koning and
Daniel Weiskopf and
Marcus Magnor Interactive Visualization and Simulation
of Astronomical Nebulae . . . . . . . . 78--87
Matthew Rocklin and
Andy R. Terrel Symbolic Statistics with SymPy . . . . . 88--93
Christian G. Parigger Computational Physics Activities at the
University of Tennessee Space Institute 94--97
Weldon Vlasak Analyzing Atoms Using the Spice Computer
Program . . . . . . . . . . . . . . . . 98--103
Charles Day The Future of Computational Science ---
in 1977 . . . . . . . . . . . . . . . . 104
George K. Thiruvathukal Accelerating Learning with Distance
Education and Open Courseware . . . . . 4--5
George F. Luger and
Norman Chonacky Programming from the bottom up [Books] 6--10
Victoria Stodden Reproducible Research: Tools and
Strategies for Scientific Computing . . 11--12
Victoria Stodden and
Randall LeVeque and
Ian Mitchell Reproducible Research for Scientific
Computing: Tools and Strategies for
Changing the Culture . . . . . . . . . . 13--17
Juliana Freire and
Claudio T. Silva Making Computations and Publications
Reproducible with VisTrails . . . . . . 18--25
David Donoho and
Matan Gavish Three Dream Applications of Verifiable
Computational Results . . . . . . . . . 26--31
Philip Guo CDE: a Tool for Creating Portable
Experimental Software Packages . . . . . 32--35
Bill Howe Virtual Appliances, Cloud Computing, and
Reproducible Research . . . . . . . . . 36--41
Patrick Vandewalle Code Sharing Is Associated with Research
Impact in Image Processing . . . . . . . 42--47
Andrew Davison Automated Capture of Experiment Context
for Easier Reproducibility in
Computational Research . . . . . . . . . 48--56
Baoshe Zhang and
Mirek Fatyga and
William C. Sleeman Designing and Implementing a Computing
Framework for Image-Guided Radiation
Therapy Research . . . . . . . . . . . . 57--68
Paul F. Dubois Testing Scientific Programs . . . . . . 69--73
Luis Gustavo Nonato and
Claudio T. Silva and
Fernando V. Paulovich User-Centered Multidimensional
Projection Techniques . . . . . . . . . 74--81
Luis Eduardo Mesa and
Ignacio Gonzalez-Franco and
Eugenio Roanes-Lozano and
Alberto Garcia-Alvarez and
Antonio Hernando Optimal Route Finding and Rolling-Stock
Selection for the Spanish Railways . . . 82--89
Steven F. Barrett Book Writing: Not for the Faint Hearted 90--91
Thomas Doggett and
Nargess Memarsadeghi NASA Computational Case Study,
Hyperspectral Data Processing:
Cryospheric Change Detection . . . . . . 92--97
Oliver Pell and
Vitali Averbukh Maximum Performance Computing with
Dataflow Engines . . . . . . . . . . . . 98--103
Charles Day Mind-Reading Computers . . . . . . . . . 104--104
Isabel Beichl Counting on Today's Students . . . . . . 4
Jacob Moldenhauer Fortranning It with Style [review of \em
Modern Fortran: Style and Usage
(Clerman, N. S. and Spector, W.; 2012)] 5--6
John Rundle and
Geoffrey Fox Computational Earthquake Science . . . . 7--9
Eric M. Heien and
Michael Sachs Understanding Long-Term Earthquake
Behavior through Simulation . . . . . . 10--20
Jun Wang and
Marlon Pierce and
Yu Ma and
Geoffrey Fox and
Andrea Donnellan and
Jay Parker and
Margaret Glasscoe Using Service-Based GIS to Support
Earthquake Research and Disaster
Response . . . . . . . . . . . . . . . . 21--30
Andrea Donnellan and
Jay Parker and
Margaret Glasscoe and
Eric De Jong and
Marlon Pierce and
Geoffrey Fox and
Dennis McLeod and
John Rundle and
Lisa Grant Ludwig A Distributed Approach to Computational
Earthquake Science: Opportunities and
Challenges . . . . . . . . . . . . . . . 31--42
Michael Sachs and
Donald L. Turcotte and
James R. Holliday and
John Rundle Forecasting Earthquakes: The RELM Test 43--48
Xianmei Wan and
Shengjun Liu and
Jim X. Chen and
Xiaogang Jin Geodesic Distance-Based Realistic Facial
Animation Using RBF Interpolation . . . 49--55
Mina Sohrabi and
Esmat Rashedi A High-Speed, Performance-Optimization
Algorithm Based on a Gravitational
Approach . . . . . . . . . . . . . . . . 56--62
Yanlin Luo Distance-Based Focus $+$ Context Models
for Exploring Large Volumetric Medical
Datasets . . . . . . . . . . . . . . . . 63--71
Pierre Esterie and
Mathias Gaunard and
Joel Falcou and
Jean-Thierry Lapreste Exploiting Multimedia Extensions in C++:
a Portable Approach . . . . . . . . . . 72--77
Tino Weinkauf and
Holger Theisel Flow Visualization and Analysis Using
Streak and Time Lines . . . . . . . . . 78--84
Mitchell A. Thornton Professional Licensure for Software
Engineers: An Update . . . . . . . . . . 85--87
Charles Day Gaming in Meatspace . . . . . . . . . . 88
Isabel Beichl Hail and Farewell . . . . . . . . . . . 4
Ed Pegg, Jr. Number-Crunching Could Have Crunched
More . . . . . . . . . . . . . . . . . . 6--7
Massimo Di Pierro and
David Skinner Concurrency in Modern Programming
Languages . . . . . . . . . . . . . . . 8--10
Martin Kalin and
David Miller Clojure for Number Crunching on
Multicore Machines . . . . . . . . . . . 12--23
Steve Vinoski Concurrency and Message Passing in
Erlang . . . . . . . . . . . . . . . . . 24--34
Duncan Coutts and
Andres Loh Deterministic Parallel Programming with
Haskell . . . . . . . . . . . . . . . . 36--43
Xusheng Wang and
Beifang Yi The Application of Data Cubes in
Business Data Visualization . . . . . . 44--50
David D. Landis and
Jens S. Hummelshòj and
Svetlozar Nestorov and
Jeff Greeley and
Marcin Du\lak and
Thomas Bligaard and
Jens K. Nòrskov and
Karsten W. Jacobsen The Computational Materials Repository 51--57
Leopold Grinberg and
Joseph A. Insley and
Dmitry A. Fedosov and
Vitali Morozov and
Michael E. Papka and
George Em Karniadakis Tightly Coupled Atomistic-Continuum
Simulations of Brain Blood Flow on
Petaflop Supercomputers . . . . . . . . 58--67
Konrad Hinsen Caring for Your Data . . . . . . . . . . 70--74
Dianne P. O'Leary Variable-Geometry Trusses: What's Your
Angle? . . . . . . . . . . . . . . . . . 76--79
Grzegorz K. Karch and
Filip Sadlo and
Daniel Weiskopf and
Charles D. Hansen and
Guo-Shi Li and
Thomas Ertl Dye-Based Flow Visualization . . . . . . 80--86
Charles Day Nobel prizes for computational science
[The Last Word] . . . . . . . . . . . . 88
George K. Thiruvathukal Who Needs Tablets? We Do . . . . . . . . 4--6
Jeffrey Carver and
Dustin Heaton and
Lorin Hochstein and
Roscoe Bartlett Self-Perceptions about Software
Engineering: A Survey of Scientists and
Engineers . . . . . . . . . . . . . . . 7--11
William J. Feiereisen and
James D. Myers Computing in Science and Engineering ---
in Manufacturing . . . . . . . . . . . . 12--15
Mark S. Shephard and
Cameron Smith and
John E. Kolb Bringing HPC to Engineering Innovation 16--25
Rey DeLeon and
Dana Jacobsen and
Inanc Senocak Large-Eddy Simulations of Turbulent
Incompressible Flows on GPU Clusters . . 26--33
Manuel Freiberger and
Florian Knoll and
Kristian Bredies and
Hermann Scharfetter and
Rudolf Stollberger The Agile Library for Biomedical Image
Reconstruction Using GPU Acceleration 34--44
A. Wendell O. Rodrigues and
Frédéric Guyomarc'h and
Jean-Luc Dekeyser An MDE Approach for Automatic Code
Generation from UML/MARTE to OpenCL . . 46--55
Michela Taufer and
Narayan Ganesan and
Sandeep Patel GPU-Enabled Macromolecular Simulation:
Challenges and Opportunities . . . . . . 56--57
Nareg Sinenian and
Alex B. Zylstra and
Mario J.-E. Manuel and
Johan A. Frenje and
Atma D. Kanojia and
Joshua Stillerman and
Richard D. Petrasso A Multithreaded Modular Software Toolkit
for Control of Complex Experiments . . . 66--75
Heidi J. C. Ellis and
Gerard Weatherby and
Ronald J. Nowling and
Jay Vyas and
Matt Fenwick and
Michael Gryk A Pipeline Software Architecture for NMR
Spectrum Data Translation . . . . . . . 76--83
Konrad Hinsen A Glimpse of the Future of Scientific
Programming . . . . . . . . . . . . . . 84--88
Steven I. Gordon Advancing Computational Science
Education through Xsede . . . . . . . . 90--92
Emanuele Santos and
Jorge Poco and
Yaxing Wei and
Shishi Liu and
Bob Cook and
Dean N. Williams and
Claudio T. Silva UV-CDAT: Analyzing Climate Datasets from
a User's Perspective . . . . . . . . . . 94--103
Charles Day Computing Hell . . . . . . . . . . . . . 104
George K. Thiruvathukal Computational Science, Demystified ---
the Future, Revealed --- and CiSE, 2013 4--5
John Ludlam \booktitleR by Example: Numerical
Solutions to Differential Equations
(Soetaert, K., et al; 2012) [Book
Review] . . . . . . . . . . . . . . . . 6--7
Jim X. Chen and
Yanlin Li and
Tianyu Zhang Medical Simulations [Guest Editors'
introduction] . . . . . . . . . . . . . 8--9
Qi Xing and
Rui Han and
Yanlin Li and
Wenzhen Yang and
Jim X. Chen Automatically Assessing Limb Alignment
and Hip Fracture Using $3$D Models . . . 10--20
Jihui Li and
Felasfa Wodajo and
Mark Theiss and
Michelle Kew and
Alison Jarmas Computer Simulation Techniques in Giant
Cell Tumor Curettage and Defect
Reconstruction . . . . . . . . . . . . . 21--26
Lin Yang and
Tian-Yu Zhang and
Jim X. Chen and
Pei-Dong Dai and
Wei Quan and
Ke-Qiang Wang and
Zheng-Min Wang Motion Simulation of Inner Hair Cell
Stereocilia . . . . . . . . . . . . . . 27--33
Yao-yao Fu and
Tianyu Zhang and
Peidong Dai and
Lin Yang Evaluating Potential Ear Canal
Reconstruction for Congenital Aural
Atresia Patients . . . . . . . . . . . . 34--40
Yan-Lin Luo Effectively Visualizing the Spatial
Structure of Cerebral Blood Vessels . . 41--46
Bo-Wen Shen and
Bron Nelson and
Wei-Kuo Tao and
Yuh-Lang Lin Advanced Visualizations of Scale
Interactions of Tropical Cyclone
Formation and Tropical Waves . . . . . . 47--59
Luis Lehner and
Steven L. Liebling Simulations to Usher in the Era of
Gravitational Wave Astronomy . . . . . . 60--65
Arch D. Robison Composable Parallel Patterns with Intel
Cilk Plus . . . . . . . . . . . . . . . 66--71
David G. Simpson NASA Computational Case Study: The
Flight of Friendship 7 . . . . . . . . . 72--78
J. L. Salinet and
G. N. Oliveira and
F. J. Vanheusden and
J. L. D. Comba and
G. A. Ng and
F. S. Schlindwein Visualizing intracardiac atrial
fibrillation electrograms using spectral
analysis . . . . . . . . . . . . . . . . 79--87
Charles Day Monte Carlo, Colloids, and Public Health 88
George K. Thiruvathukal Productivity in the Cognitive Overload
Era . . . . . . . . . . . . . . . . . . 4--5
Wesley Snyder Book Review: \booktitleComputer Vision
with Theme-Based Learning, by Simon J.
D. Prince . . . . . . . . . . . . . . . 6--7
Judith Bayard Cushing and
James French Science Data Management: Maximizing the
Yield [Guest Editors' introduction] . . 8--10
Tamas Budavari and
Laszlo Dobos and
Alexander S. Szalay SkyQuery: Federating Astronomy Archives 12--20
Bill Howe and
Daniel Halperin and
François Ribalet and
Sagar Chitnis and
E. Virginia Armbrust Collaborative Science Workflows in SQL 22--31
Milena Ivanova and
Martin Kersten and
Stefan Manegold and
Yagiz Kargin Data Vaults: Database Technology for
Scientific File Repositories . . . . . . 32--42
V. M. Megler and
David Maier Data Near Here: Bringing Relevant Data
Closer to Scientists . . . . . . . . . . 44--53
Michael Stonebraker and
Paul Brown and
Donghui Zhang and
Jacek Becla SciDB: A Database Management System for
Applications with Complex Analytics . . 54--62
Teong Han Chew and
Kwee Hong Joyce-Tan and
Zeti Azura Mohamed Hussein and
Pek Iee Elizabeth-Chia and
Mohd Shahir Shamsir Improving Molecular Dynamics Simulation
Performance on Low-Cost Systems . . . . 64--70
Gennady Andrienko and
Natalia Andrienko and
Harald Bosch and
Thomas Ertl and
Georg Fuchs and
Piotr Jankowski and
Dennis Thom Thematic Patterns in Georeferenced
Tweets through Space-Time Visual
Analytics . . . . . . . . . . . . . . . 72--82
Cliff Reiter Math-Style Experiments in J . . . . . . 84--88
Eugenio Roanes-Lozano and
Antonio Hernando and
Alberto Garcia-Alvarez and
Luis Eduardo Mesa and
Ignacio Gonzalez-Franco Calculating the Exploitation Costs of
Trains in the Spanish Railways . . . . . 89--95
Rubin H. Landau and
Manuel J. Paez and
Cristian C. Bordeianu A Blended, Multimodal Access eTextBook
in Computational Physics . . . . . . . . 96--103
Charles Day Knowing Me, Knowing You: Networks of
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George K. Thiruvathukal What's in an Algorithm? . . . . . . . . 4--5
Natalie Enright Jerger Explaining Parallel Architecture Design 6--7
George K. Thiruvathukal and
Manish Parashar Cloud Computing . . . . . . . . . . . . 8--9
Manish Parashar and
Moustafa AbdelBaky and
Ivan Rodero and
Aditya Devarakonda Cloud Paradigms and Practices for
Computational and Data-Enabled Science
and Engineering . . . . . . . . . . . . 10--18
Gideon Juve and
Mats Rynge and
Ewa Deelman and
Jens-S. Vockler and
G. Bruce Berriman Comparing FutureGrid, Amazon EC2, and
Open Science Grid for Scientific
Workflows . . . . . . . . . . . . . . . 20--29
D. K. Krishnappa and
D. Irwin and
E. Lyons and
M. Zink CloudCast: Cloud Computing for
Short-Term Weather Forecasts . . . . . . 30--37
Yogesh Simmhan and
Saima Aman and
Alok Kumbhare and
Rongyang Liu and
Sam Stevens and
Qunzhi Zhou and
Viktor Prasanna Cloud-Based Software Platform for Big
Data Analytics in Smart Grids . . . . . 38--47
Mingze Bai and
Shixin Sun and
Hong Tang and
Yusheng Dou and
Glenn V. Lo An SPMD-Like Algorithm for Parallelizing
Molecular Dynamics Using OpenMP . . . . 48--56
Dianne P. O'Leary Phantom Measurements . . . . . . . . . . 57--59
Konrad Hinsen Software Development for Reproducible
Research . . . . . . . . . . . . . . . . 60--63
Steffen Koch and
Florian Heimerl and
Thomas Ertl Visual Document Retrieval: Supporting
Text Search and Analysis with Visual
Analytics . . . . . . . . . . . . . . . 66--74
Jacqueline Beckvermit and
Joseph Peterson and
Todd Harman and
Scott Bardenhagen and
Charles Wight and
Qingyu Meng and
Martin Berzins Multiscale Modeling of Accidental
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Judith Bayard Cushing Beyond Big Data? . . . . . . . . . . . . 4--5
Thomas Vogel \booktitleAll the Way to CUDA [Book
review] . . . . . . . . . . . . . . . . 6--8
Francis J. Alexander Machine Learning [Guest Editor's
introduction] . . . . . . . . . . . . . 9--11
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Manuel M. Oliveira Towards More Accessible Visualizations
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Peter Kogge and
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D. Post and
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K. Newmeyer and
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D. E. Post and
C. A. Atwood and
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R. L. Meakin and
M. M. Hurwitz and
S. Dey and
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S. A. Morton and
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for Improving DoD Acquisition Efficiency 25--31
S. Dey and
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S. I. Gordon and
J. Demmel and
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O. Arcas-Abella and
A. Armejach and
T. Hayes and
G. A. Malazgirt and
O. Palomar and
B. Salami and
N. Sonmez Hardware Acceleration for Query
Processing: Leveraging FPGAs, CPUs, and
Memory . . . . . . . . . . . . . . . . . 80--87
E. Gedenk Researchers Mine Information from
Next-Generation Subsurface Flow
Simulations . . . . . . . . . . . . . . 88--91
A. Dasgupta and
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Anonymous Watch the World's Leading Experts Take
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M. Contrastin and
A. Rice and
M. Danish and
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Charles Day Our Black, Imperfect Mirrors . . . . . . 108
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Dale Reed The Impact of the Exploring Computer
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James C. Lester Collaboration and Gender Equity in
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Portia K. Botchway Addressing Negative Racial and Gendered
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Carsten Dachsbacher Ambient Volume Illumination . . . . . . 90--97
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Douglass E. Post The Periodic Table of Elements, an Early
Example of ``Big Data'' . . . . . . . . 4--7
Vivienne Tien Python and Physical Modeling . . . . . . 8--10
Jeff Forbes Best of RESPECT, Part 2 . . . . . . . . 11--13
Glenda Scales African-American Middle School Girls:
Influences on Attitudes toward Computer
Science . . . . . . . . . . . . . . . . 14--23
Heather M. Wright Lesbian, Gay, Bisexual, Transgender, and
Queer Students' Sense of Belonging in
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Lawrence Dennis STARS Computing Corps: Enhancing
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and Building Community in Computing . . 44--57
Janet M. Smith Enacting Agency: The Strategies of Women
of Color in Computing . . . . . . . . . 58--68
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Rodrigo Castro Discrete Event Modeling and
Simulation-Driven Engineering for the
ATLAS Data Acquisition Network . . . . . 70--83
Michael E. Papka Expanding the Scope of High-Performance
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Bruno Raffin Parallel Voronoi Computation for
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Gabriel A. Wainer Discrete Modeling and Simulation [Guest
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Dhananjai M. Rao Eliciting Characteristics of H5N1 in
High-Risk Regions Using Phylogeography
and Phylodynamic Simulations . . . . . . 11--24
Daejin Park A Scalable Modeling and Simulation
Environment for Chemical Gas Emergencies 25--33
Cezary Piskor-Ignatowicz Agent-Based Creation and Simulation of
Artificial Social Networks and the
Analysis of Their Properties . . . . . . 34--41
Kimmo Ikkala A Conceptual Modeling and Simulation
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Ru Zhu Speedup of Micromagnetic Simulations
with C++ AMP on Graphics Processing
Units . . . . . . . . . . . . . . . . . 53--59
Andreas Putz OpenPNM: A Pore Network Modeling Package 60--74
Konrad Hinsen The Power to Create Chaos . . . . . . . 75--79
Eric Gedenk Illuminating the Universe's Ignition . . 80--83
Charles Day Faraday's Tablet . . . . . . . . . . . . 84
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Infrastructure Revisited . . . . . . . . 4--7
Ravi Madduri and
Ian Foster Science as a Service [Guest Editors'
introduction] . . . . . . . . . . . . . 8--9
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Susumu Mori and
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Sandeep K. Sood and
Sunil Kumar Gupta A Cloud-Based Seizure Alert System for
Epileptic Patients That Uses
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Cole Freniere and
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Mehdi Raessi and
Gaurav Khanna The Feasibility of Amazon's Cloud
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Christian D. Ott Massive Computation for Understanding
Core-Collapse Supernova Explosions . . . 78--92
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Laura Wolf Multiyear Simulation Study Provides
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Renato R. O. da Silva and
Paulo E. Rauber and
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Charles Day Computers in Cars . . . . . . . . . . . 108
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Douglass Post and
Kevin Newmeyer and
Sandra Landsberg and
Forrest Shull and
Scott Sundt The Computational Research and
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Environments (CREATE) Program, Part 2 7--9
Thomas Moyer and
Jonathan Stergiou and
Garth Reese and
James Luton and
Najib Abboud Navy Enhanced Sierra Mechanics (NESM):
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Nathan Hariharan and
Andrew Wissink and
Mark Potsdam and
Roger Strawn First-Principles Physics-Based
Rotorcraft Flowfield Simulation Using
HPCMP CREATE-AV Helios . . . . . . . . . 19--26
Keegan Delaney and
Joseph Gorski and
Aaron Katz Development and Application of an
Incompressible Strand Solver . . . . . . 27--34
Richard P. Kendall and
Lawrence G. Votta and
Douglass E. Post and
Chris A. Atwood and
Nathan Hariharan and
Scott A. Morton and
Michael Gilbert and
E. Thomas Moyer and
Robert P. McNally and
Anthony J. Wilson Risk-Based Software Development
Practices for CREATE Multiphysics HPC
Software Applications . . . . . . . . . 35--46
Wesley Wilson and
Tony Quezon and
Vu Trinh and
Cullen Sarles and
Jun Li and
Joseph Gorski HPCMP CREATE-SH Integrated Hydrodynamic
Design Environment . . . . . . . . . . . 47--56
Anonymous IEEE Computer Society . . . . . . . . . 57
Nargess Memarsadeghi NASA Computational Case Study: Golomb
Rulers and Their Applications . . . . . 58--62
Matthew Turk Risks . . . . . . . . . . . . . . . . . 63--65
Michael Jay Schillaci Maximum Mechanics . . . . . . . . . . . 66--67
Franz Sauer and
Tyson Neuroth and
Jacqueline Chu and
Kwan-Liu Ma Audience-Targeted Design Considerations
for Effective Scientific Storytelling 68--76
Greg Cunningham and
Katie Elyce Jones Argonne Discovery Yields Self-Healing
Diamond-Like Carbon . . . . . . . . . . 77--79
Scott Lathrop A Call to Action to Prepare the
High-Performance Computing Workforce . . 80--83
Charles Day Writing Fiction . . . . . . . . . . . . 84
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Jim X. Chen Plans for CiSE . . . . . . . . . . . . . 4
Jim X. Chen Transparent Computing . . . . . . . . . 5--6
Yaoxue Zhang and
Kehua Guo and
Ju Ren and
Yuezhi Zhou and
Jianxin Wang and
Jianer Chen Transparent Computing: A Promising
Network Computing Paradigm . . . . . . . 7--20
Shuang Li and
Yuezhi Zhou and
Yaoxue Zhang NSAP+: Supporting Transparent Computing
Applications with a Service-Oriented
Protocol . . . . . . . . . . . . . . . . 21--28
Letian Yi and
Jianbin Li and
Yaoxue Zhang Improving the Scalability of Wearable
Devices via Transparent Computing
Technology . . . . . . . . . . . . . . . 29--37
Kehua Guo and
Yujian Huang and
Li Kuang and
Yaoxue Zhang CASP: A Context-Aware Transparent Active
Service Provision Architecture in a
Mobile Internet Environment . . . . . . 38--45
Tao Peng and
Qin Liu and
Guojun Wang A Multilevel Access Control Scheme for
Data Security in Transparent Computing 46--53
Jiaqing Dong and
Hao Yin and
Lyu Yongqiang and
Hao Li and
Wei Wang TAM: A Transparent Agent Architecture
for Measuring Mobile Applications . . . 54--61
Mauricio Marin and
Veronica Gil-Costa and
Carolina Bonacic and
Alonso Inostrosa Simulating Search Engines . . . . . . . 62--73
Osman Yasar Modeling and Simulation: How Everything
Seems to Form and Grow . . . . . . . . . 74--77
Konrad Hinsen The Roles of Code in Computational
Science . . . . . . . . . . . . . . . . 78--82
Markus Eisenbach Large-Scale Calculations for Material
Sciences Using Accelerators to Improve
Time- and Energy-to-Solution . . . . . . 83--85
Francis Sullivan Learning Monte Carlo . . . . . . . . . . 86--87
Charles Day Pervasive Computing on Fictional Farms 88
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Elie Track and
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George Strawn The End of Moore's Law . . . . . . . . . 4--6
R. Stanley Williams What's Next? . . . . . . . . . . . . . . 7--13
Kwabena Boahen A Neuromorph's Prospectus . . . . . . . 14--28
Kenneth Flamm Has Moore's Law Been Repealed? An
Economist's Perspective . . . . . . . . 29--40
Thomas N. Theis and
H.-S. Philip Wong The End of Moore's Law: A New Beginning
for Information Technology . . . . . . . 41--50
Paolo A. Gargini How to Successfully Overcome Inflection
Points, or Long Live Moore's Law . . . . 51--62
Yasser M. K. Omar and
Hoda Osama and
Amr Badr Double Hashing Sort Algorithm . . . . . 63--69
Richard F. Martin Undergraduate Computational Physics
Education: Uneven History and Promising
Future . . . . . . . . . . . . . . . . . 70--78
Justin H. S. Breaux Cancer's Big Data Problem . . . . . . . 79--81
Joao Comba and
Filip Sadlo and
Daniel Weiskopf A Report from VIS 2016 . . . . . . . . . 82--90
Jeffrey C. Carver and
Neil Chue Hong and
Selim Ciraci The 4th International Workshop on
Software Engineering for HPC in
Computational Science and Engineering 91--95
Melinda Baldwin Hidden Computers . . . . . . . . . . . . 96
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Steven Gottlieb Changes at the NSF and Computing in the
Physics Curriculum . . . . . . . . . . . 4--5
Adrienne Decker and
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Steven McGee and
Randi McGee-Tekula and
Jennifer Duck and
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Lucia Dettori and
Dale F. Reed and
Brenda Wilkerson and
Don Yanek and
Andrew M. Rasmussen and
Gail Chapman Does a Taste of Computing Increase
Computer Science Enrollment? . . . . . . 8--18
Anonymous IEEE Computer Society . . . . . . . . . 19
Helen H. Hu and
Patricia B. Campbell A Framework for Levels of Student
Participation and Stages of Relevant
Curriculum . . . . . . . . . . . . . . . 20--29
Wendy DuBow and
Alexis Kaminsky and
Joanna Weidler-Lewis Multiple Factors Converge to Influence
Women's Persistence in Computing: A
Qualitative Analysis . . . . . . . . . . 30--39
Sarah Wille and
Jeanne Century and
Miriam Pike Exploratory Research to Expand
Opportunities in Computer Science for
Students with Learning Differences . . . 40--50
Anonymous 2017 B. Ramakrishna Rau Award Call for
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Jack Dongarra and
Stanimire Tomov and
Piotr Luszczek and
Jakub Kurzak and
Mark Gates and
Ichitaro Yamazaki and
Hartwig Anzt and
Azzam Haidar and
Ahmad Abdelfattah With Extreme Computing, the Rules Have
Changed . . . . . . . . . . . . . . . . 52--62
Paul Messina The Exascale Computing Project . . . . . 63--67
Bernard P. Zeigler Using the Parallel DEVS Protocol for
General Robust Simulation with Near
Optimal Performance . . . . . . . . . . 68--77
Konrad Hinsen A Dream of Simplicity: Scientific
Computing on Turing Machines . . . . . . 78--85
Blaine Willhoft and
Rob Willhoft Decoding Software Design . . . . . . . . 86--87
Charles Day Computer-Aided Fashion . . . . . . . . . 88
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Yingjuan Ma and
C. T. Russell and
Andrew Nagy and
Gabor Toth Understanding the Solar Wind--Mars
Interaction with Global
Magnetohydrodynamic Modeling . . . . . . 6--17
Jacob A. Englander and
Matthew A. Vavrina and
Lucy F. Lim and
Lucy A. McFadden and
Alyssa R. Rhoden and
Keith S. Noll Trajectory Optimization for Missions to
Small Bodies with a Focus on Scientific
Merit . . . . . . . . . . . . . . . . . 18--28
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Shangbing Gao and
Qiaolin Ye and
Limin Luo and
Zhigeng Pan and
Yunyang Yan and
Hao Zheng Recursive Orthogonal Label Regression: A
Framework for Semisupervised Dimension
Reduction . . . . . . . . . . . . . . . 30--43
Olivier Mesnard and
Lorena A. Barba Reproducible and Replicable
Computational Fluid Dynamics: It's
Harder Than You Think . . . . . . . . . 44--55
Yan Wang and
Laurent Navarro and
Yue Zhang and
Evan Kao and
Yuemin Zhu and
Guy Courbebaisse Intracranial Aneurysm Phantom
Segmentation Using a $4$D Lattice
Boltzmann Method . . . . . . . . . . . . 56--67
Katie Bethea Earth Scientists Shake Things up on
Titan . . . . . . . . . . . . . . . . . 68--71
Andres Kwasinski Signals, Systems, and Design [Book
review] . . . . . . . . . . . . . . . . 72--73
Osman Yasar The Essence of Computational Thinking 74--82
Marcus P. Foster Quantity Correctness in Fortran Programs 83--87
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Barry I. Schneider Looking Back at 45 Years of
Computational Physics and Chemistry . . 4--5
J. Robert Neely and
Bronis R. de Supinski and
Charles H. Still Application Modernization for the
Exascale Era . . . . . . . . . . . . . . 6--8
J. Robert Neely and
Bronis R. de Supinski Application Modernization at LLNL and
the Sierra Center of Excellence . . . . 9--18
Hai Ah Nam and
Gabriel Rockefeller and
Mike Glass and
Shawn Dawson and
John Levesque and
Victor Lee The Trinity Center of Excellence
Co-Design Best Practices . . . . . . . . 19--26
Hans Johansen and
Arthur Rodgers and
N. Anders Petersson and
David McCallen and
Bjorn Sjogreen and
Mamun Miah Toward Exascale Earthquake Ground Motion
Simulations for Near-Fault Engineering
Analysis . . . . . . . . . . . . . . . . 27--37
Shahnaz Habibkhah and
Jalal Arasi and
Hossein Bolandi SPACSSIM: Simulation and Analysis
Software for Mathematical Modeling of
Satellite Position and Attitude Control
Systems . . . . . . . . . . . . . . . . 38--48
Bo-Wen Shen and
Samson Cheung and
Yu-Ling Wu and
Jui-Lin F. Li and
David Kao Parallel Implementation of the Ensemble
Empirical Mode Decomposition and Its
Application for Earth Science Data
Analysis . . . . . . . . . . . . . . . . 49--57
Giora Alexandron and
Michal Armoni and
Michal Gordon and
David Harel Teaching Scenario-Based Programming: An
Additional Paradigm for the High School
Computer Science Curriculum, Part 1 . . 58--67
Giancarlo Fortino and
Raffaele Gravina and
Wilma Russo and
Claudio Savaglio Modeling and Simulating
Internet-of-Things Systems: A Hybrid
Agent-Oriented Approach . . . . . . . . 68--76
John Goodacre Innovating the Delivery of Server
Technology with Kaleao KMAX . . . . . . 77--81
Laura Wolf and
Jim Collins Merging the Machines of Modern Science 82--84
Alcebiades Dal Col and
Paola Valdivia and
Fabiano Petronetto and
Fabio Dias and
Claudio T. Silva and
L. Gustavo Nonato Wavelet-Based Visual Analysis for Data
Exploration . . . . . . . . . . . . . . 85--91
Massimo Di Pierro What Is the Blockchain? . . . . . . . . 92--95
Charles Day Find Your Summer Soulmate with Blur! . . 96
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Jack S. Hale and
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Timothy C. Burt From Experts Guiding Data to Data
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Bert Debusschere How Do We Create More Equitable,
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Timothy J. Williams Early Science on Theta . . . . . . . . . 73--77
Konrad Hinsen Reusable Versus Re-editable Code . . . . 78--83
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Harbir Antil and
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Parampreet Singh Glimpses of Space-Time Beyond the
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Debanjan Datta and
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Mellissa S. C. Warner Introduction to PySPLIT: A Python
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Yanhua Wang and
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Shukuan Lin and
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Sibendu Som and
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Prabhu Ramachandran automan: A Python-Based Automation
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D. Qian and
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D. Kothe and
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A. Muzy Exploiting Activity for the Modeling and
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A. Terrel Introduction to Accelerating Scientific
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D. S. Katz and
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V. Lanore Fostering Reuse in Scientific Computing
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K. Ram and
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M. Salmon and
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Siyu Zhu and
Yongle Li and
Koffi Togbenou and
Tianyu Xiang An Efficient Optimization Algorithm to
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Yuanchen Zeng and
Weihua Zhang and
Dongli Song and
Zhenchen Chang and
Haifeng Zhang Response Prediction of Stochastic
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Application on Railway Vehicle . . . . . 18--30
Tian Li and
Deng Qin and
Jiye Zhang and
Ming Li Aerodynamic Drag Reduction of High-Speed
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Lanxin Jiang and
Shoune Xiao and
Bing Yang and
Guangwu Yang and
Tao Zhu and
Dawei Dong and
Jingke Zhang Finite Element Analysis of Tensile
Properties for Single-Strap Butt Joint
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Jianjin Yang and
Kai Lan and
Shengyang Zhu and
Kaiyun Wang and
Wanming Zhai and
Xuancheng Yuan Dynamic Analysis on Stiffness
Enhancement Measures of Slab End for
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Zigang Deng and
Jipeng Li and
Hongdi Wang and
Yanxing Li and
Jun Zheng Dynamic Simulation of the Vehicle/Bridge
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Hou Yue and
Song Yadong and
Wu Guosong and
Luo Yun and
Yao Yuan Simulation and Experimental Study on
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Xun Wu and
Tefang Chen and
Yating Chen and
Chaoqun Xiang and
Zhi Liu and
Kaidi Li An Online Diagnostic Method for
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Inverter Based on Output Voltage
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Kaidi Li and
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Shu Cheng and
Tianjian Yu and
Chaoqun Xiang and
Xun Wu A Novel Fault-Tolerant Control Technique
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Jonathan Alvarsson and
Ola Spjuth SciPipe --- Turning Scientific Workflows
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S. Jha and
S. Lathrop and
J. Nabrzyski and
L. Ramakrishnan Incorporating Scientific Workflows in
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H. Oliver and
M. Shin and
D. Matthews and
O. Sanders and
S. Bartholomew and
A. Clark and
B. Fitzpatrick and
R. van Haren and
N. Drost and
R. Hut Workflow Automation for Cycling Systems 7--21
E. Deelman and
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M. Rynge and
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G. Papadimitriou and
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I. Altintas and
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Ann Christine Catlin and
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Andres Bejarano Lifecycle Support for Scientific
Investigations: Integrating Data,
Computing, and Workflows . . . . . . . . 49--61
M. Turilli and
V. Balasubramanian and
A. Merzky and
I. Paraskevakos and
S. Jha Middleware Building Blocks for Workflow
Systems . . . . . . . . . . . . . . . . 62--75
O. Yildiz and
J. Ejarque and
H. Chan and
S. Sankaranarayanan and
R. M. Badia and
T. Peterka Heterogeneous Hierarchical Workflow
Composition . . . . . . . . . . . . . . 76--86
Anonymous Keep Your Career Options Open: Upload
Your Resume Today! . . . . . . . . . . . 87--87
J. Barrett and
V. E. Taylor and
M. A. Leung The ACM Richard Tapia Celebration of
Diversity in Computing Conferences,
Presented by CMD-IT . . . . . . . . . . 88--92
Anonymous IEEE Computer Society . . . . . . . . . C3--C3
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Anonymous Table of Contents . . . . . . . . . . . 2--3
J. X. Chen Applications of Extreme Learning
Machines . . . . . . . . . . . . . . . . 4--5
M. Li and
S. Wibowo and
W. Guo Nonlinear Curve Fitting Using Extreme
Learning Machines and Radial Basis
Function Networks . . . . . . . . . . . 6--15
X. Niu and
Z. Wang and
Z. Pan Extreme Learning Machine-Based Deep
Model for Human Activity Recognition
With Wearable Sensors . . . . . . . . . 16--25
Q. Li and
Q. Peng and
J. Chen and
C. Yan Improving Image Classification Accuracy
With ELM and CSIFT . . . . . . . . . . . 26--34
W. He and
Z. Li and
S. Yang and
W. Quan SV-FVDM: A Synthetic Vision Based Full
Velocity Difference Model for
Interactive Traffic Simulation . . . . . 35--45
S. Xiao and
K. Zhang and
G. Liu and
Y. Wang and
J. Duan and
L. Kong Multivariable Electromagnetic
Optimization Design Exploiting Hybrid
Kriging . . . . . . . . . . . . . . . . 46--54
W. Zhang and
F. Zhang and
W. Chen and
Y. Jiang and
D. Song Fault State Recognition of Rolling
Bearing Based Fully Convolutional
Network . . . . . . . . . . . . . . . . 55--63
Y. Li and
K. Nomura and
J. A. Insley and
V. Morozov and
K. Kumaran and
N. A. Romero and
W. A. Goddard and
R. K. Kalia and
A. Nakano and
P. Vashishta Scalable Reactive Molecular Dynamics
Simulations for Computational Synthesis 64--75
Y. Deng and
T. Li and
Y. Luo and
X. Zhao CUDA-Based Volume Rendering and
Inspection for Time-Varying Ultrasonic
Testing Datasets . . . . . . . . . . . . 76--86
C. Pradal and
S. Cohen-Boulakia and
P. Valduriez and
D. Shasha VersionClimber: Version Upgrades Without
Tears . . . . . . . . . . . . . . . . . 87--93
Anonymous \booktitleIEEE Security & Privacy . . . . 94--94
Anonymous IEEE DataPort . . . . . . . . . . . . . 95--95
Anonymous Stay Connected . . . . . . . . . . . . . 96--96
Anonymous IEEE Computer Society . . . . . . . . . C3--C3
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W. Quan Intelligent Information Processing . . . 4--5
Y. Yang and
L. Ma and
D. Huang and
N. Qin Output Feedback Repetitive Learning
Control of an Electrohydraulic Actuator
of a Lower Limb Rehabilitation
Exoskeleton . . . . . . . . . . . . . . 6--19
Q. Jiang and
D. Liang and
F. Yan and
D. Liu Force Sensor Model Based on FEA for the
Electromagnetic Levitation System . . . 20--25
H. Zhang and
D. Li and
T. Wang and
T. Li and
X. Yu and
A. Bouras Uncertainty and Equivalence Relation
Analysis for Hesitant Fuzzy Rough Sets
and Their Applications in Classification 26--39
Z. Hua and
Z. Sun and
H. Jia and
Z. Zhao and
L. Hou Track Occupation Detection Based on a
Maximum Posterior Probability Model
Using Multisensor Data Fusion . . . . . 40--54
C. Jin-qiang Fault Prediction of a Transformer
Bushing Based on Entropy Weight TOPSIS
and Gray Theory . . . . . . . . . . . . 55--62
J. Fernández-Macho Package \pkgWavemulcor: Wavelet Multiple
Regression and Correlation in R . . . . 63--73
K. E. Jones Supercomputing Improves Predictions of
Fluid Flow in Rock . . . . . . . . . . . 74--76
Anonymous IEEE Computer Society . . . . . . . . . C3--C3
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Anonymous Keep Your Career Options Open . . . . . C2--C2
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Anonymous Table of contents . . . . . . . . . . . 2--3
Y. Deng and
T. Li and
Y. Luo and
X. Zhao Corrections to ``CUDA-Based Volume
Rendering and Inspection for
Time-Varying Ultrasonic Testing
Datasets'' . . . . . . . . . . . . . . . 4--4
M. F. Wofford and
B. M. Boscoe and
C. L. Borgman and
I. V. Pasquetto and
M. S. Golshan Jupyter Notebooks as Discovery
Mechanisms for Open Science: Citation
Practices in the Astronomy Community . . 5--15
L. J. Hwang and
R. A. Pauloo and
J. Carlen Assessing the Impact of Outreach Through
Software Citation for Community Software
in Geodynamics . . . . . . . . . . . . . 16--25
F. Krüger and
D. Schindler A Literature Review on Methods for the
Extraction of Usage Statements of
Software and Data . . . . . . . . . . . 26--38
P. Alliez and
R. D. Cosmo and
B. Guedj and
A. Girault and
M. Hacid and
A. Legrand and
N. Rougier Attributing and Referencing (Research)
Software: Best Practices and Outlook
From Inria . . . . . . . . . . . . . . . 39--52
Anonymous IEEE Computer Society Has You Covered! 52--52
C. Chen and
C. Xiang and
S. Cheng and
L. Zhi and
K. Li and
Y. Chen and
X. Li A Novel Transition Strategy of Hybrid
Direct Torque Control . . . . . . . . . 53--63
C. Guo and
Y. Yang and
Y. Jiang and
T. Li Condition Analysis of a High-Speed Train
Based on Similarity Ratio and MDBN . . . 64--76
P. Zhao and
G. Wu and
S. Yao and
H. Liu A Transductive Transfer Learning
Approach Based on Manifold Learning . . 77--87
D. Rangasamy and
S. Rajappan and
M. Natesan A Multi-Objective Evolutionary Approach
for Preprocessing Imbalanced Microarray
Datasets . . . . . . . . . . . . . . . . 88--100
Anonymous COMPSAC 2020 . . . . . . . . . . . . . . 101--101
O. Mesnard and
L. A. Barba Reproducible Workflow on a Public Cloud
for Computational Fluid Dynamics . . . . 102--116
N. Heinonen Predicting the Risk of Cancer With
Computational Electrodynamics . . . . . 117--120
Anonymous IEEE Computer Society . . . . . . . . . C3--C3
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Anonymous COMPSAC 2020 . . . . . . . . . . . . . . C2--C2
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Anonymous Table of Contents . . . . . . . . . . . 2--3
D. S. Katz and
N. P. C. Hong and
T. Clark and
M. Fenner and
M. E. Martone Software and Data Citation . . . . . . . 4--7
Anonymous Call for Articles \booktitleIEEE
Pervasive Computing . . . . . . . . . . 7--7
S. Druskat Software and Dependencies in Research
Citation Graphs . . . . . . . . . . . . 8--21
C. Hsu and
A. E. Bandrowski and
T. H. Gillespie and
J. Udell and
K. Lin and
I. B. Ozyurt and
J. S. Grethe and
M. E. Martone Comparing the Use of Research Resource
Identifiers and Natural Language
Processing for Citation of Databases,
Software, and Other Digital Artifacts 22--32
R. D. Cosmo and
M. Gruenpeter and
S. Zacchiroli Referencing Source Code Artifacts: A
Separate Concern in Software Citation 33--43
A. Biswas and
C. M. Biwer and
D. J. Walters and
J. Ahrens and
D. Francom and
E. Lawrence and
R. L. Sandberg and
D. A. Fredenburg and
C. Bolme An Interactive Exploration Tool for
High-Dimensional Datasets: A Shock
Physics Case Study . . . . . . . . . . . 44--54
Anonymous Top Technology Trends for 2020 Featured
in \booktitleComputer . . . . . . . . . 54--54
P. A. Quezada-Sarmiento and
L. E. Enciso-Quispe and
L. A. Jumbo-Flores and
W. Hernandez Knowledge Representation Model for
Bodies of Knowledge Based on Design
Patterns and Hierarchical Graphs . . . . 55--63
G. Aldrich and
J. Lukasczyk and
J. D. Hyman and
G. Srinivasan and
H. Viswanathan and
C. Garth and
H. Leitte and
J. P. Ahrens and
B. Hamann A Query-Based Framework for Searching,
Sorting, and Exploring Data Ensembles 64--76
Anonymous IEEE Quantum Week 2020 Is Open for
Submissions . . . . . . . . . . . . . . 77--77
X. Lin and
M. Simon and
N. Niu Exploratory Metamorphic Testing for
Scientific Software . . . . . . . . . . 78--87
Anonymous CGA Ad . . . . . . . . . . . . . . . . . 87--87
A. Trisovic and
C. R. Jones and
B. Couturier and
M. Clemencic Provenance Tracking in the LHCb Software 88--94
Anonymous IEEE IRI 2020 Call for Papers . . . . . 95--95
Anonymous HOST 2020 Register Now . . . . . . . . . 96--96
Anonymous IEEE Computer Society . . . . . . . . . C3--C3
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Anonymous IEEE Computer Society Has You Covered! C2--C2
Anonymous Masthead . . . . . . . . . . . . . . . . 1--1
Anonymous Table of Contents . . . . . . . . . . . 2--3
N. Memarsadeghi and
A. Varshney Virtual and Augmented Reality
Applications in Science and Engineering 4--6
A. Shaker and
X. Lin and
D. Y. Kim and
J. Kim and
G. Sharma and
M. A. Devine Design of a Virtual Reality Tour System
for People With Intellectual and
Developmental Disabilities: a Case Study 7--17
M. R. Desselle and
R. A. Brown and
A. R. James and
M. J. Midwinter and
S. K. Powell and
M. A. Woodruff Augmented and Virtual Reality in Surgery 18--26
S. Su and
V. Perry and
L. Bravo and
S. Kase and
H. Roy and
K. Cox and
V. R. Dasari Virtual and Augmented Reality
Applications to Support Data Analysis
and Assessment of Science and
Engineering . . . . . . . . . . . . . . 27--39
Anonymous \booktitleIEEE Transactions on
Sustainable Computing . . . . . . . . . 39--39
R. Ali and
J. Chen and
G. Qu and
M. Pekarek and
Y. Cai and
F. Zhou and
M. Huang Pain Marker Evaluation Application in
Augmented Reality and Mobile Platforms 40--50
Anonymous Call for Nominations . . . . . . . . . . 51--51
S. S. Gill and
R. Buyya Failure Management for Reliable Cloud
Computing: a Taxonomy, Model, and Future
Directions . . . . . . . . . . . . . . . 52--63
Anonymous Call for Papers . . . . . . . . . . . . 63--63
A. B. Wilson and
J. Wang and
E. W. Jenkins and
S. M. Husson Numerical Simulation of Solid Phase
Adsorption Models Using Time-Integrated,
Up-Winded Finite Element Strategies . . 64--78
M. Parashar and
A. Simonet and
I. Rodero and
F. Ghahramani and
G. Agnew and
R. Jantz and
V. Honavar The Virtual Data Collaboratory: a
Regional Cyberinfrastructure for
Collaborative Data-Driven Research . . . 79--92
Anonymous IEEE Computer Society Volunteer Service
Awards . . . . . . . . . . . . . . . . . 93--93
J. Comba and
D. Weiskopf The Past and Future of Visualization for
Computing in Science and Engineering . . 94--99
M. P. Linares and
L. Montero and
J. Casanovas A Traffic Simulation Tool for Assessing
Smart City Policies (CitScale) . . . . . 100--112
K. Hinsen The Magic of Content-Addressable Storage 113--119
Anonymous \booktitleIEEE Security & Privacy . . . . 119--119
Anonymous Call for 2020 Major Awards Nominations 120--120
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Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Society . . C4--C4
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Anonymous IEEE Computer Society Has You Covered! C2--C2
Anonymous Masthead . . . . . . . . . . . . . . . . 1--1
Anonymous Table of Contents . . . . . . . . . . . 2--3
J. Adler Computational Science and Engineering
Education . . . . . . . . . . . . . . . 4--6
S. A. Lathrop and
K. Cahill and
S. I. Gordon and
J. Houchins and
R. M. Panoff and
A. Weeden Preparing a Computationally Literate
Workforce . . . . . . . . . . . . . . . 7--16
N. A. Barriga and
F. Besoaín Artificial Intelligence and Mobile
Programming Courses for a Video Game
Development Program in Chile . . . . . . 17--25
Anonymous \booktitleIEEE Pervasive Computing . . . 25--25
L. A. Barba Engineers Code: Reusable Open Learning
Modules for Engineering Computations . . 26--35
C. Peoples Research-Based Education on a Master of
Science Degree in Professional Software
Development . . . . . . . . . . . . . . 36--44
P. Pine and
L. I. Paina Computational Methods in Chemistry and
Biochemistry Education: Visualization of
Proteins . . . . . . . . . . . . . . . . 45--49
A. L. Graves and
A. D. Light Hitting the Ground Running:
Computational Physics Education to
Prepare Students for Computational
Physics Research . . . . . . . . . . . . 50--60
Anonymous \booktitleIEEE Transactions on
Sustainable Computing . . . . . . . . . 60--60
Anonymous IEEE Computer Society Volunteer Service
Awards . . . . . . . . . . . . . . . . . 61--61
S. Forouzandeh and
A. R. Aghdam and
S. Forouzandeh and
S. Xu Addressing the Cold-Start Problem Using
Data Mining Techniques and Improving
Recommender Systems by Cuckoo Algorithm:
A Case Study of Facebook . . . . . . . . 62--73
R. Pari and
M. Sandhya and
S. Sankar A Multitier Stacked Ensemble Algorithm
for Improving Classification Accuracy 74--85
T. Przedzinski and
M. Malawski and
Z. Wa s Software Development Strategies for
High-Energy Physics Simulations Based on
Quantum Field Theory . . . . . . . . . . 86--98
K. Hinsen Staged Computation: The Technique You
Did Not Know You Were Using . . . . . . 99--103
Anonymous \booktitleComputer Graphics and
Applications . . . . . . . . . . . . . . 103--103
R. Venkatakrishnan and
A. Misra and
V. Kindratenko High-Level Synthesis-Based Approach for
Accelerating Scientific Codes on FPGAs 104--109
Anonymous Call for Articles . . . . . . . . . . . 109--109
J. Kunkel and
W. Filinger and
C. Meesters and
A. Gerbes The HPC Certification Forum: Toward a
Globally Acknowledged HPC Certification 110--114
Anonymous IEEE Computer Society . . . . . . . . . C3--C3
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Anonymous Masthead . . . . . . . . . . . . . . . . 1--1
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T. Barnes and
J. Payton and
N. Washington and
F. Stukes and
A. Peterfreund and
S. Dunton Featured Research on Equity and
Sustained Participation in Engineering,
Computing, and Technology . . . . . . . 4--6
R. Santo and
L. A. DeLyser and
J. Ahn Negotiating Equity Priorities Within
Systems Change: a Case Study of a
District-Level Initiative to Implement
K12 Computer Science Education . . . . . 7--19
G. J. Washington and
M. Meijias and
L. Burge Understanding How to Engage Black HS
Boys in Computer Science Through Tech
Innovation and Entrepreneurship . . . . 20--28
Anonymous IEEE Computer Society: Call for Papers 28--28
R. T. Cummings and
E. H. Huff and
N. A. Mack and
K. Womack and
A. Reid and
B. Ghoram and
K. Gosha and
J. E. Gilbert An Exploration of Black Students
Interacting With Computing College and
Career Readiness Vlog Commentary Social
Media Influencers . . . . . . . . . . . 29--40
T. M. Nakajima and
J. Goode Lighting Up Learning: Teachers'
Pedagogical Approaches for Mak(e)ing
Computing Culturally Responsive in
Electronic-Textiles Classrooms . . . . . 41--50
J. Goode and
K. Peterson and
J. Malyn-Smith and
G. Chapman Online Professional Development for High
School Computer Science Teachers:
Features That Support an Equity-Based
Professional Learning Community . . . . 51--59
I. Rodero and
M. Parashar Data Cyberinfrastructure for End-to-End
Science . . . . . . . . . . . . . . . . 60--71
Anonymous Computer Graphics and Applications . . . 71--71
S. Barkley and
T. G. Dimiduk and
J. Fung and
D. M. Kaz and
V. N. Manoharan and
R. McGorty and
R. W. Perry and
A. Wang Holographic Microscopy With Python and
HoloPy . . . . . . . . . . . . . . . . . 72--82
Anonymous Call for Papers: \booktitleIEEE
Transactions on Computers . . . . . . . 82--82
Anonymous Harlan D. Mills Award: Call for Software
Engineering Award Nominations . . . . . 83--83
S. R. Johnson and
A. Prokopenko and
K. J. Evans Automated Fortran C++ Bindings for
Large-Scale Scientific Applications . . 84--94
Anonymous Call for Articles . . . . . . . . . . . 94--94
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Society . . 95--95
K. M. Thyng The Importance of Colormaps . . . . . . 96--102
O. Marques and
A. Barker Training Efforts in the Exascale
Computing Project . . . . . . . . . . . 103--107
Anonymous IEEE Computer Society . . . . . . . . . C3--C3
Anonymous IEEE Quantum Week . . . . . . . . . . . C4--C4
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Anonymous Table of Contents . . . . . . . . . . . 2--3
Anonymous IEEE Computer Society . . . . . . . . . 4--4
L. A. Barba Computational Science and Engineering in
2020 . . . . . . . . . . . . . . . . . . 5--7
Anonymous Stay connected . . . . . . . . . . . . . 8--8
F. Foertter and
K. Gaither and
K. Hinsen and
J. West Computational Science in the Battle
Against COVID-19 . . . . . . . . . . . . 9--10
F. González-Arias and
T. Reddy and
J. E. Stone and
J. A. Hadden-Perilla and
J. R. Perilla Scalable Analysis of Authentic Viral
Envelopes on FRONTERA . . . . . . . . . 11--20
Anonymous \booktitleIEEE Security & Privacy . . . . 20--20
Y. Xie and
D. Du and
C. B. Karki and
W. Guo and
A. E. Lopez-Hernandez and
S. Sun and
B. Y. Juarez and
H. Li and
J. Wang and
L. Li Revealing the Mechanism of SARS-CoV-2
Spike Protein Binding With ACE2 . . . . 21--29
Anonymous IEEE Computer Society: Call for Papers 29--29
R. E. Amaro and
A. J. Mulholland Biomolecular Simulations in the Time of
COVID-19, and After . . . . . . . . . . 30--36
M. Kaplan and
C. Kneifel and
V. Orlikowski and
J. Dorff and
M. Newton and
A. Howard and
D. Shinn and
M. Bishawi and
S. Chidyagwai and
P. Balogh and
A. Randles Cloud Computing for COVID-19: Lessons
Learned From Massively Parallel Models
of Ventilator Splitting . . . . . . . . 37--47
A. Reinert and
L. S. Snyder and
J. Zhao and
A. S. Fox and
D. F. Hougen and
C. Nicholson and
D. S. Ebert Visual Analytics for Decision-Making
During Pandemics . . . . . . . . . . . . 48--59
Anonymous \booktitleIEEE Computer Graphics and
Applications . . . . . . . . . . . . . . 59--59
Anonymous IEEE Computer Society Volunteer Service
Awards . . . . . . . . . . . . . . . . . 60--60
K. Bana and
F. Kru el and
J. Biela ski Optimal Kernel Design for Finite-Element
Numerical Integration on GPUs . . . . . 61--74
J. J. Hack and
M. E. Papka The U.S. High-Performance Computing
Consortium in the Fight Against COVID-19 75--80
J. L. D. Comba Data Visualization for the Understanding
of COVID-19 . . . . . . . . . . . . . . 81--86
Anonymous \booktitleIEEE Transactions on
Sustainable Computing . . . . . . . . . 86--86
M. D. Schuster Lattice Gas Cellular Automata Fluid
Dynamics Case Study . . . . . . . . . . 87--91
M. A. Leung Diversity and Inclusion Through
Leadership During Challenging Times . . 92--96
J. D. Pinto and
C. Quintana and
R. M. Quintana Exemplifying Computational Thinking
Scenarios in the Age of COVID-19:
Examining the Pandemic's Effects in a
Project-Based MOOC . . . . . . . . . . . 97--102
Anonymous Call for Articles: \booktitleIEEE
Pervasive Computing . . . . . . . . . . 102--102
D. R. Musk A Comparison of Quantum and Traditional
Fourier Transform Computations . . . . . 103--110
Anonymous \booktitleIEEE Transactions on Big Data 111--111
R. T. Cummings and
E. W. Huff and
N. A. Mack and
K. Womack and
A. Reid and
B. Ghoram and
K. Gosha and
J. E. Gilbert Corrections to An Exploration of Black
Students Interacting With Computing
College and Career Readiness Vlog
Commentary Social Media Influencers . . 112--112
Anonymous IEEE Computer Society Jobs Board . . . . 113--113
Anonymous Call for Papers: \booktitleIEEE
Transactions on Computers . . . . . . . 114--114
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Society . . C3--C3
Anonymous \booktitleComputingEdge . . . . . . . . C4--C4
Anonymous Front Cover . . . . . . . . . . . . . . C1--C1
Anonymous \booktitleComputingEdge . . . . . . . . C2--C2
Anonymous IEEE Computer Society . . . . . . . . . 1--1
Anonymous Masthead . . . . . . . . . . . . . . . . 2--2
Anonymous Table of Contents . . . . . . . . . . . 3--4
G. Wainer and
K. Hinsen and
K. Gaither Computational Science in the Battle
Against COVID-19: Part II . . . . . . . 5--6
J. V. Vermaas and
A. Sedova and
M. B. Baker and
S. Boehm and
D. M. Rogers and
J. Larkin and
J. Glaser and
M. D. Smith and
O. Hernandez and
J. C. Smith Supercomputing Pipelines Search for
Therapeutics Against COVID-19 . . . . . 7--16
A. Tolk and
C. Glazner and
J. Ungerleider Computational Decision Support for the
COVID-19 Healthcare Coalition . . . . . 17--24
K. A. Pierce and
E. Ho and
X. Wang and
R. Pasco and
Z. Du and
G. Zynda and
J. Song and
G. Wells and
S. J. Fox and
L. Ancel Meyers Early COVID-19 Pandemic Modeling: Three
Compartmental Model Case Studies From
Texas, USA . . . . . . . . . . . . . . . 25--34
Anonymous Call for Articles . . . . . . . . . . . 34--34
M. Bergonzi and
E. Pecker-Marcosig and
E. Kofman and
R. Castro Discrete-Time Modeling of COVID-19
Propagation in Argentina with Explicit
Delays . . . . . . . . . . . . . . . . . 35--45
Anonymous IEEE Computer Society Jobs Board . . . . 46--46
S. Smith and
M. Sayari Nejad and
A. Wassyng Raising the Bar: Assurance Cases for
Scientific Software . . . . . . . . . . 47--57
L. A. Barba Trustworthy Computational Evidence
Through Transparency and Reproducibility 58--64
S. Ploeg and
H. Gunther and
R. M. Camacho Simphony: An Open-Source Photonic
Integrated Circuit Simulation Framework 65--74
Anonymous \booktitleComputer Graphics and
Applications . . . . . . . . . . . . . . 74--74
A. Biswas and
J. P. Ahrens and
S. Dutta and
J. M. Musser and
A. S. Almgren and
T. L. Turton Feature Analysis, Tracking, and Data
Reduction: An Application to Multiphase
Reactor Simulation MFiX-Exa for In-Situ
Use Case . . . . . . . . . . . . . . . . 75--82
Anonymous IEEE Computer Society: Call for Papers 82--82
M. D. Schuster Infection Modeling Case Study: Discrete
Spatial Susceptible-Infected-Recovered
Model . . . . . . . . . . . . . . . . . 83--88
Anonymous \booktitleIEEE Annals of the History of
Computing . . . . . . . . . . . . . . . 88--88
J. West Large-Scale Scientific Computing in the
Fight Against COVID-19 . . . . . . . . . 89--92
Anonymous \booktitleSecurity & Privacy . . . . . . 92--92
A. Mandanici and
S. Alessandro Sar\`a and
G. Fiumara and
G. Mandaglio Studying Physics, Getting to Know
Python: RC Circuit, Simple Experiments,
Coding, and Data Analysis With Raspberry
Pi . . . . . . . . . . . . . . . . . . . 93--96
L. M. Frehill and
M. A. Leung Twitter Gone Wrong: How Constructive
Dialog and Collaboration Enable
Innovation . . . . . . . . . . . . . . . 97--101
Anonymous \booktitleIEEE Transactions on Big Data 101--101
A. C. Elster The European Factor: From ARM to Atos 102--105
A. Reinert and
L. S. Snyder and
J. Zhao and
A. S. Fox and
D. F. Hougen and
C. Nicholson and
D. S. Ebert Corrections to Visual Analytics for
Decision-Making During Pandemics . . . . 106--106
Anonymous Call for Articles: \booktitleIEEE
Pervasive Computing . . . . . . . . . . 106--106
Anonymous \booktitleIEEE Transactions on
Sustainable Computing . . . . . . . . . 107--107
Anonymous Call for 2021 Major Awards Nominations 108--108
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Society . . C3--C3
Anonymous IEEE Computer Society Has You Covered! C4--C4
Anonymous Front Cover . . . . . . . . . . . . . . C1--C1
Anonymous \booktitleComputingEdge . . . . . . . . C2--C2
Anonymous IEEE Computer Society: Call for Papers 1--1
Anonymous Masthead . . . . . . . . . . . . . . . . 2--2
Anonymous Table of Contents . . . . . . . . . . . 3--4
H. Fangohr and
T. Kluyver and
M. DiPierro Jupyter in Computational Science . . . . 5--6
B. E. Granger and
F. Pérez Jupyter: Thinking and Storytelling With
Code and Data . . . . . . . . . . . . . 7--14
S. Juneau and
K. Olsen and
R. Nikutta and
A. Jacques and
S. Bailey Jupyter-Enabled Astrophysical Analysis
Using Data-Proximate Computing Platforms 15--25
R. P. Abernathey and
T. Augspurger and
A. Banihirwe and
C. C. Blackmon-Luca and
T. J. Crone and
C. L. Gentemann and
J. J. Hamman and
N. Henderson and
C. Lepore and
T. A. McCaie and
N. H. Robinson and
R. P. Signell Cloud-Native Repositories for Big
Scientific Data . . . . . . . . . . . . 26--35
M. Beg and
J. Taka and
T. Kluyver and
A. Konovalov and
M. Ragan-Kelley and
N. M. Thiéry and
H. Fangohr Using Jupyter for Reproducible
Scientific Workflows . . . . . . . . . . 36--46
Anonymous \booktitleIEEE Transactions on Computers 46--46
B. H. M. Mooers A PyMOL Snippet Library for Jupyter to
Boost Researcher Productivity . . . . . 47--53
A. R. Watters Shader-Like Computations in WebGL for
Advanced Graphics and General Purposes 54--63
Anonymous IEEE Computer Society Jobs Board . . . . 64--64
X. Lin and
M. Simon and
Z. Peng and
N. Niu Discovering Metamorphic Relations for
Scientific Software From User Forums . . 65--72
D. A. Brown and
K. Vahi and
M. Taufer and
V. Welch and
E. Deelman Reproducing GW150914: The First
Observation of Gravitational Waves From
a Binary Black Hole Merger . . . . . . . 73--82
Anonymous Hans Karlsson Standards Award . . . . . 83--83
S. Dutta and
T. L. Turton and
J. P. Ahrens A Confidence-Guided Technique for
Tracking Time-Varying Features . . . . . 84--92
Anonymous \booktitleIEEE Annals of the History of
Computing . . . . . . . . . . . . . . . 92--92
R. Thomas and
S. Cholia Interactive Supercomputing With Jupyter 93--98
Anonymous \booktitleTransactions on Big Data . . . 98--98
J. Piazentin Ono and
J. Freire and
C. T. Silva Interactive Data Visualization in
Jupyter Notebooks . . . . . . . . . . . 99--106
C. -R. Tan The Nascent Case for Adopting Jupyter
Notebooks as a Pedagogical Tool for
Interdisciplinary Humanities, Social
Science, and Arts Education . . . . . . 107--113
M. Emani and
V. Vishwanath and
C. Adams and
M. E. Papka and
R. Stevens and
L. Florescu and
S. Jairath and
W. Liu and
T. Nama and
. Sujeeth Accelerating Scientific Applications
With SambaNova Reconfigurable Dataflow
Architecture . . . . . . . . . . . . . . 114--119
Anonymous Harlan D. Mills Award . . . . . . . . . 120--120
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Society . . C3--C3
Anonymous IEEE Computer Society Has You Covered! C4--C4
Anonymous [Front cover] . . . . . . . . . . . . . C1--C1
Anonymous \booktitleComputingEdge . . . . . . . . C2--C2
Anonymous IEEE Computer Society: Call for Papers 1--1
Anonymous [Masthead] . . . . . . . . . . . . . . . 2--2
Anonymous Table of Contents . . . . . . . . . . . 3--4
Lorena A. Barba The Python/Jupyter Ecosystem: Today's
Problem-Solving Environment for
Computational Science . . . . . . . . . 5--9
John West and
Paul A. Navrátil and
Maytal Dahan and
Matthew Vaughn Large Scale Science on NSF's Frontera
System . . . . . . . . . . . . . . . . . 10--13
Anonymous \booktitleIEEE Transactions on Big Data 13--13
Leigh Orf Modeling the World's Most Violent
Thunderstorms . . . . . . . . . . . . . 14--24
David E. DeMarle and
Andrew C. Bauer In Situ Visualization With Temporal
Caching . . . . . . . . . . . . . . . . 25--33
Stephen G. Yeager and
Ping Chang and
Gokhan Danabasoglu and
James Edwards and
Nan Rosenbloom and
Qiuying Zhang and
Dan Fu and
Xue Liu and
Fred Castruccio Bringing the Future Into Focus: Benefits
and Challenges of High-Resolution Global
Climate Change Simulations . . . . . . . 34--41
Anonymous \booktitleComputer Graphics and
Applications . . . . . . . . . . . . . . 41--41
John Cazes and
Richard Todd Evans and
Aaron Dubrow and
Lei Huang and
Si Liu and
Robert McLay Preparing Frontera for Texascale Days 42--47
Ganesh Balasubramanian and
Joydeep Munshi and
Wei Chen and
TeYu Chien Towards Improving the Efficiency of
Organic Solar Cells by Coarse-Grained
Atomistic Modeling of Processing
Dependent Morphologies . . . . . . . . . 48--55
William P. Reinhardt Relationships Between the Zeros,
Weights, and Weight Functions of
Orthogonal Polynomials: Derivative Rule
Conjecture (the DRC) Applied to
Stieltjes and Spectral Imaging . . . . . 56--64
Willem A. Smit and
Johan A. du Preez and
Guy A. E. Vandenbosch Mobile Processor Energy Usage in the
Scientific Environment . . . . . . . . . 65--72
Anonymous Call for Articles: \booktitleIEEE
Pervasive Computing . . . . . . . . . . 72--72
Patrick Diehl and
Dominic Marcello and
Parsa Amini and
Hartmut Kaiser and
Sagiv Shiber and
Geoffrey C. Clayton and
Juhan Frank and
Gregor Daiß and
Dirk Pflüger and
David Eder and
Alice Koniges and
Kevin Huck Performance Measurements Within
Asynchronous Task-Based Runtime Systems:
a Double White Dwarf Merger as an
Application . . . . . . . . . . . . . . 73--81
Mohammad Akhlaghi and
Raúl Infante-Sainz and
Boudewijn F. Roukema and
Mohammadreza Khellat and
David Valls-Gabaud and
Roberto Baena-Gallé Toward Long-Term and Archivable
Reproducibility . . . . . . . . . . . . 82--91
Anshu Dubey Insights From the Software Design of a
Multiphysics Multicomponent Scientific
Code . . . . . . . . . . . . . . . . . . 92--95
Ann E. Jeffers The COVID-19 Pandemic is Widening the
Gap for Women in STEM . . . . . . . . . 96--98
David S. Ebert and
Audrey Reinert and
Brian Fisher Visual Analytics Review: an Early and
Continuing Success of Convergent
Research With Impact . . . . . . . . . . 99--108
Anonymous IEEE Computer Society: Call for Papers 108--108
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Society . . C3--C3
Anonymous IEEE Computer Society Has You Covered! C4--C4
Anonymous Front Cover . . . . . . . . . . . . . . C1--C1
Anonymous \booktitleComputingEdge . . . . . . . . C2--C2
Anonymous IEEE Computer Society . . . . . . . . . 1--1
Anonymous Masthead . . . . . . . . . . . . . . . . 2--2
Anonymous Table of Contents . . . . . . . . . . . 3--4
Lorena A. Barba and
Andreas Klöckner and
Prabhu Ramachandran and
Rollin Thomas Scientific Computing With Python on
High-Performance Heterogeneous Systems 5--7
Jack D. Betteridge and
Patrick E. Farrell and
David A. Ham Code Generation for Productive,
Portable, and Scalable Finite Element
Simulation in Firedrake . . . . . . . . 8--17
Anonymous \booktitleIT Professional: CALL FOR
ARTICLES . . . . . . . . . . . . . . . . 17--17
Timo Betcke and
Matthew W. Scroggs Designing a High-Performance Boundary
Element Library With OpenCL and Numba 18--28
Anonymous \booktitleIEEE Transactions on Big Data 28--28
Freddie D. Witherden Python at Petascale With PyFR or: How I
Learned to Stop Worrying and Love the
Snake . . . . . . . . . . . . . . . . . 29--37
John Bartlett and
Chris Uchytil and
Duane Storti High-Productivity Parallelism With
Python Plus Packages (But Without a
Cluster) . . . . . . . . . . . . . . . . 38--46
Anonymous Call for Articles: \booktitleIEEE
Pervasive Computing . . . . . . . . . . 46--46
Lisandro Dalcin and
Yao-Lung L. Fang mpi4py: Status Update After 12 Years of
Development . . . . . . . . . . . . . . 47--54
Anonymous \booktitleIEEE Transactions on
Sustainable Computing . . . . . . . . . 54--54
Zachary J. Weiner Stencil Solvers for PDEs on GPUs: an
Example From Cosmology . . . . . . . . . 55--64
Anonymous Call for Papers: \booktitleIEEE
Transactions on Computers . . . . . . . 64--64
Roberto Iacono Bounding the Error Function . . . . . . 65--68
Anonymous Richard E. Merwin Student Scholarship 68--68
M. A. Heroux The Collegeville Workshops on Scientific
Software: Looking Back and Forward . . . 69--72
Michael Bauer and
Wonchan Lee and
Manolis Papadakis and
Marcin Zalewski and
Michael Garland Supercomputing in Python With Legate . . 73--79
Gabriel Wainer and
Román Cárdenas and
Kevin Henares and
Cristina Ruiz-Martín Modeling and Simulation of Space-Based
Pandemic Scenarios Using an Open-Source
Platform . . . . . . . . . . . . . . . . 80--84
Cyrille Rossant and
Nicolas P. Rougier High-Performance Interactive Scientific
Visualization With Datoviz via the
Vulkan Low-Level GPU API . . . . . . . . 85--90
Anonymous IEEE Computer Society: Call for Papers 90--90
William P. Reinhardt Erratum to Relationships Between the
Zeros, Weights, and Weight Functions of
Orthogonal Polynomials: Derivative Rule
Conjecture (the DRC) Applied to
Stieltjes and Spectral Imaging . . . . . 91--91
Anonymous Harlan D. Mills Award: Call for Software
Engineering Award Nominations . . . . . 92--92
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Scoiety . . C3--C3
Anonymous IEEE Computer Society Has You Covered! C4--C4
Anonymous [Front cover] . . . . . . . . . . . . . C1--C1
Anonymous \booktitleComputingEdge . . . . . . . . C2--C2
Anonymous IEEE Computer Society . . . . . . . . . 1--1
Anonymous Masthead . . . . . . . . . . . . . . . . 2--2
Anonymous Table of Contents . . . . . . . . . . . 3--4
Manish Parashar and
David Abramson Translational Computer Science for
Science and Engineering . . . . . . . . 5--6
Douglas Doerfler and
Steven Gottlieb and
William Gropp and
Barry I. Schneider and
Alan Sussman Performance Portability for Advanced
Architectures . . . . . . . . . . . . . 7--9
Anonymous Call for articles . . . . . . . . . . . 9--9
Christian Trott and
Luc Berger-Vergiat and
David Poliakoff and
Sivasankaran Rajamanickam and
Damien Lebrun-Grandie and
Jonathan Madsen and
Nader Al Awar and
Milos Gligoric and
Galen Shipman and
Geoff Womeldorff The Kokkos EcoSystem: Comprehensive
Performance Portability for High
Performance Computing . . . . . . . . . 10--18
Patrick Schmitz and
Scott Yockel and
Claire Mizumoto and
Thomas Cheatham and
Dana Brunson Advancing the Workforce That Supports
Computationally and Data Intensive
Research . . . . . . . . . . . . . . . . 19--27
S. John Pennycook and
Jason D. Sewall and
Douglas W. Jacobsen and
Tom Deakin and
Simon McIntosh-Smith Navigating Performance, Portability, and
Productivity . . . . . . . . . . . . . . 28--38
Anonymous \booktitleIEEE Transactions on Big Data 38--38
Michael Wolfe Performant, Portable, and Productive
Parallel Programming With Standard
Languages . . . . . . . . . . . . . . . 39--45
Anshu Dubey and
Lois Curfman McInnes and
Rajeev Thakur and
Erik W. Draeger and
Thomas Evans and
Timothy C. Germann and
William E. Hart Performance Portability in the Exascale
Computing Project: Exploration Through a
Panel Series . . . . . . . . . . . . . . 46--54
Beth A. Plale and
Tanu Malik and
Line C. Pouchard Reproducibility Practice in
High-Performance Computing: Community
Survey Results . . . . . . . . . . . . . 55--60
Anonymous IEEE Computer Society Has You Covered! 61--61
Anshu Dubey and
Martin Berzins and
Carsten Burstedde and
Michael L. Norman and
Didem Unat and
Mohammed Wahib Structured Adaptive Mesh Refinement
Adaptations to Retain Performance
Portability With Increasing
Heterogeneity . . . . . . . . . . . . . 62--66
Tessa Durham Brooks and
Raychelle Burks and
Mark Meysenburg and
Erin Doyle and
Chris Huber Building a Culture of Computing in the
Sciences Using Images as Data Within a
Community of Practice . . . . . . . . . 67--71
Anonymous Call for 2021 Major Awards Nominations 72--72
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Scoiety . . C3--C3
Anonymous IEEE Computer Society Jobs Board . . . . C4--C4
Anonymous [Front cover] . . . . . . . . . . . . . C1--C1
Anonymous \booktitleComputingEdge . . . . . . . . C2--C2
Anonymous IEEE Computer Society . . . . . . . . . 1--1
Anonymous Masthead . . . . . . . . . . . . . . . . 2--2
Anonymous Table of Contents . . . . . . . . . . . 3--4
Jaydeep Bardhan and
Mary Ann Leung and
Eileen Martin and
Amanda Randles 2Guest Editor's Introduction: DOE
Computational Science Graduate
Fellowship Research Showcase . . . . . . 5--8
David Brown and
James Hack and
Robert Voigt The Early Years and Evolution of the DOE
Computational Science Graduate
Fellowship Program . . . . . . . . . . . 9--15
Anonymous \booktitleIEEE Computer Graphics and
Applications . . . . . . . . . . . . . . 15--15
Allison H. Baker On Preserving Scientific Integrity for
Climate Model Data in the HPC Era . . . 16--24
Anonymous Call for Papers: \booktitleIEEE
Transactions on Computers . . . . . . . 24--24
Julianne Chung Research in Inverse Problems and
Training in Computational Science: a
Reflection on the Importance of
Community . . . . . . . . . . . . . . . 25--33
Anonymous \booktitleIEEE Transactions on
Sustainable Computing . . . . . . . . . 33--33
Mala L. Radhakrishnan How to Model for a Living: The CSGF as a
Catalyst for Supermodels . . . . . . . . 34--41
Anonymous \booktitleIEEE Transactions on Big Data 41--41
Eric C. Chi Discovering Geometry in Data Arrays . . 42--51
Anonymous \booktitleIEEE Annals of the History of
Computing . . . . . . . . . . . . . . . 51--51
Jarrod R. McClean From Molecules to Quantum Computers: a
Research Retrospective . . . . . . . . . 52--57
Anonymous IEEE Computer Society: Call for Papers 57--57
Joseph Michael Barton High Performance Computing for Science
and Engineering in the Department of
Defense . . . . . . . . . . . . . . . . 58--62
Bradley Settlemyer and
George Amvrosiadis and
Philip Carns and
Robert Ross It's Time to Talk About HPC Storage:
Perspectives on the Past and Future . . 63--68
Mark C. Miller Inclusivity Bugs and the Language We Use 69--71
Miriam Leeser and
Suranga Handagala and
Michael Zink FPGAs in the Cloud . . . . . . . . . . . 72--76
Timothy G. Mattson and
Todd A. Anderson and
Giorgis Georgakoudis \pkgPyOMP: Multithreaded Parallel
Programming in Python . . . . . . . . . 77--80
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Society . . C3--C3
Anonymous IEEE Computer Society Jobs Board . . . . C4--C4
Anonymous [Front cover] . . . . . . . . . . . . . C1--C1
Anonymous \booktitleComputingEdge . . . . . . . . C2--C2
Anonymous Table of Contents . . . . . . . . . . . 1--2
Anonymous Masthead . . . . . . . . . . . . . . . . 3--3
Anonymous IEEE Computer Society . . . . . . . . . 4--4
Timo Betcke and
Hans-Joachim Bungartz and
Garth Wells and
Scott Woodley ExCALIBUR: U.K.'s Preparation for the
Arrival of the Next Generation of HPC 5--7
Anonymous \booktitleIEEE Annals of the History of
Computing . . . . . . . . . . . . . . . 7--7
Mich\`ele Weiland and
Mark Parsons EPCC's Exascale Journey: a Retrospective
of the Past 10 Years and a Vision of the
Future . . . . . . . . . . . . . . . . . 8--13
Anonymous \booktitleIT Professional: Call for
Articles . . . . . . . . . . . . . . . . 13--13
Richard Bower and
Benedict D. Rogers and
Matthieu Schaller Massively Parallel Particle
Hydrodynamics at Exascale . . . . . . . 14--25
Anonymous \booktitleIEEE Transactions on
Sustainable Computing . . . . . . . . . 25--25
Gábor D. Balogh and
Tobias S. Flynn and
Sylvain Laizet and
Gihan R. Mudalige and
István Z. Reguly Scalable Many-Core Algorithms for
Tridiagonal Solvers . . . . . . . . . . 26--35
Thomas W. Keal and
Alin-Marin Elena and
Alexey A. Sokol and
Karen Stoneham and
Matt I. J. Probert and
Clotilde S. Cucinotta and
David J. Willock and
Andrew J. Logsdail and
Andrea Zen and
Phil J. Hasnip and
Ian J. Bush and
Matthew Watkins and
Dario Alf\`e and
Chris-Kriton Skylaris and
Basile F. E. Curchod and
Qiong Cai and
Scott M. Woodley Materials and Molecular Modeling at the
Exascale . . . . . . . . . . . . . . . . 36--45
Anonymous \booktitleIEEE Computer Graphics and
Applications . . . . . . . . . . . . . . 45--45
Matthew Smith and
Arjen Tamerus and
Phil Hasnip Portable Acceleration of Materials
Modeling Software: CASTEP, GPUs, and
OpenACC . . . . . . . . . . . . . . . . 46--55
Anonymous \booktitleIEEE Transactions on Big Data 55--55
Anonymous IEEE Computer Society D&I Fund . . . . . 56--56
Charlie Catlett and
Pete Beckman and
Nicola Ferrier and
Michael E. Papka and
Rajesh Sankaran and
Jeff Solin and
Valerie Taylor and
Douglas Pancoast and
Daniel Reed Hands-On Computer Science: The Array of
Things Experimental Urban Instrument . . 57--63
Andrew Cary and
John Chawner and
Earl Duque and
William Gropp and
Bil Kleb and
Ray Kolonay and
Eric Nielsen and
Brian Smith Realizing the Vision of CFD in 2030 . . 64--70
Anonymous IEEE Computer Society Has You Covered! 71--71
Barry C. Husowitz Modeling of Phase Coexistence via
Thermodynamic Potentials . . . . . . . . 72--77
Anonymous \booktitleIEEE Security & Privacy . . . . 77--77
Jim Brase and
Nancy Campbell and
Barbara Helland and
Thuc Hoang and
Manish Parashar and
Michael Rosenfield and
James Sexton and
John Towns The COVID-19 High-Performance Computing
Consortium . . . . . . . . . . . . . . . 78--85
Anonymous Publications Seek 2023 Editors in Chief 86--86
Anonymous 2023 IEEE CS Charles Babbage Award . . . 87--87
Anonymous AI's 10 to Watch: Call for Nominations 88--88
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Society . . C3--C3
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Anonymous Front Cover . . . . . . . . . . . . . . C1--C1
Anonymous \booktitleComputingEdge . . . . . . . . C2--C2
Anonymous Masthead . . . . . . . . . . . . . . . . 1--1
Anonymous Table of Contents . . . . . . . . . . . 2--3
Paul Navrátil and
Christiaan Gribble and
Pascal Grosset and
John E. Stone Analytic Rendering and
Hardware-Accelerated Simulation for
Scientific Applications . . . . . . . . 4--6
Anonymous Call for Articles: \booktitleIEEE
Pervasive Computing . . . . . . . . . . 6--6
John E. Stone and
Kevin S. Griffin and
Jefferson Amstutz and
David E. DeMarle and
William R. Sherman and
Johannes Günther ANARI: a 3-D Rendering API Standard . . 7--18
Anonymous IEEE Computer Society: Call for Papers 18--18
Gabriele Bozzola and
Chi-kwan Chan and
Vasileios Paschalidis Black Hole Physics and Computer Graphics 19--30
Anonymous \booktitleIEEE Annals of the History of
Computing . . . . . . . . . . . . . . . 30--30
Gregory Abram and
Andrew Solis and
Yong Liang and
Krishna Kumar In Situ Visualization of Regional-Scale
Natural Hazards With Galaxy and Material
Point Method . . . . . . . . . . . . . . 31--39
Stefan Zellmann and
Daniel Seifried and
Nate Morrical and
Ingo Wald and
Will Usher and
Jamie A. P. Law-Smith and
Stefanie Walch-Gassner and
André Hinkenjann Point Containment Queries on Ray-Tracing
Cores for AMR Flow Visualization . . . . 40--51
Patrick C. Shriwise and
Paul P. H. Wilson and
Andrew Davis and
Paul K. Romano Hardware-Accelerated Ray Tracing of
CAD-Based Geometry for Monte Carlo
Radiation Transport . . . . . . . . . . 52--61
Anonymous \booktitleIEEE Computer Graphics and
Applications . . . . . . . . . . . . . . 61--61
Anonymous IEEE Computer Society D&I Fund . . . . . 62--62
Laurence J. Kedward and
Bálint Aradi and
Ond\vrej \vCertík and
Milan Curcic and
Sebastian Ehlert and
Philipp Engel and
Rohit Goswami and
Michael Hirsch and
Asdrubal Lozada-Blanco and
Vincent Magnin and
Arjen Markus and
Emanuele Pagone and
Ivan Pribec and
Brad Richardson and
Harris Snyder and
John Urban and
Jérémie Vandenplas The State of Fortran . . . . . . . . . . 63--72
Anonymous IEEE Computer Society . . . . . . . . . 73--73
Andrea Mandanici and
Giuseppe Mandaglio and
Giovanni Pirrotta and
Valeria Conti Nibali and
Giacomo Fiumara Simple Physics With Python: a Workbook
on Introductory Physics With Open-Source
Software . . . . . . . . . . . . . . . . 74--78
Rosa M. Badia and
Javier Conejero and
Jorge Ejarque and
Daniele Lezzi and
Francesc Lordan PyCOMPSs as an Instrument for
Translational Computer Science . . . . . 79--84
Satoshi Matsuoka and
Jens Domke and
Mohamed Wahib and
Aleksandr Drozd and
Andrew A. Chien and
Raymond Bair and
Jeffrey S. Vetter and
John Shalf Preparing for the Future Rethinking
Proxy Applications . . . . . . . . . . . 85--90
Anonymous Over the Rainbow: 21st Century Security &
Privacy Podcast . . . . . . . . . . . . 90--90
Ann E. Jeffers The Field of Computing Needs to Take
Care of Its Mental Health . . . . . . . 91--94
Anonymous \booktitleIEEE Security & Privacy . . . . 94--94
Anne C. Elster and
Tor A. Haugdahl Nvidia Hopper GPU and Grace CPU
Highlights . . . . . . . . . . . . . . . 95--100
Anonymous Get Published in the New \booktitleIEEE
Open Journal of the Computer Society . . C3--C3
Anonymous IEEE Computer Society Jobs Board . . . . C4--C4
Anonymous Front Cover . . . . . . . . . . . . . . C1--C1
Anonymous IEEE Quantum Week . . . . . . . . . . . C2--C2
Anonymous \booktitleComputing in Science &
Engineering Publication Information . . 1--1
Anonymous Table of Contents . . . . . . . . . . . 2--3
Michael A. Heroux and
Jeffrey C. Carver and
Sarah Knepper Collegeville Workshop 2021: Scientific
Software Teams . . . . . . . . . . . . . 4--5
Mark Adams and
Satish Balay and
Oana Marin and
Lois Curfman McInnes and
Richard Tran Mills and
Todd Munson and
Hong Zhang and
Junchao Zhang and
Jed Brown and
Victor Eijkhout and
Jacob Faibussowitsch and
Matthew Knepley and
Fande Kong and
Scott Kruger and
Patrick Sanan and
Barry F. Smith and
Hong Zhang The PETSc Community as Infrastructure 6--15
Cody J. Balos and
Piotr Luszczek and
Sarah Osborn and
James Willenbring and
Ulrike M. Yang Challenges of and Opportunities for a
Large Diverse Software Team . . . . . . 16--24
Anonymous Call for Papers: IEEE Computer Society 24--24
Carlos Martinez-Ortiz and
Rena Bakhshi and
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Maarten van Meersbergen and
Niels Drost and
Sven van der Burg and
Fakhereh Alidoost Structured and Unstructured Teams for
Research Software Development at The
Netherlands eScience Center . . . . . . 25--32
Jay Lofstead Experiences Integrating Interns Into
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Miranda R. Mundt and
Reed M. Milewicz and
Elaine M. Raybourn In Their Shoes: Persona-Based Approaches
to Software Quality Practice
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Anonymous IEEE Computer Society D&I Fund . . . . . 51--51
Yubo Qin and
Ivan Rodero and
Manish Parashar Toward Democratizing Access to
Facilities Data: a Framework for
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Humayra Tasnim and
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Anonymous IEEE Computer Society Information . . . 71--71
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T. Daniel Crawford and
Ashley Ringer McDonald MolSSI Education: Empowering the Next
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Anonymous \booktitleIEEE Transactions on
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Ludovic Court\`es Reproducibility and Performance: Why
Choose? . . . . . . . . . . . . . . . . 77--80
Andrea Delgado and
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P. Fonseca I Casas and
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Manish Parashar Jack Dongarra: Catalyzing the
Transformation of High-Performance
Computing . . . . . . . . . . . . . . . 4--5
Sven Hammarling and
Nicholas J. Higham The Influence and Contribution of Jack
Dongarra to Numerical Linear Algebra . . 6--11
Anonymous Call for Papers: IEEE Computer Society 11--11
Hatem Ltaief and
Marc G. Genton and
Damien Gratadour and
David E. Keyes and
Matteo Ravasi Responsibly Reckless Matrix Algorithms
for HPC Scientific Applications . . . . 12--22
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Richard W. Vuduc Jack, The Autotuner . . . . . . . . . . 24--27
Yousef Saad The Origin and Development of Krylov
Subspace Methods . . . . . . . . . . . . 28--39
Patrick Heimbach The Computational Science of Klaus
Hasselmann . . . . . . . . . . . . . . . 40--53
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Anonymous Get Published in the New \booktitleIEEE
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Dorian Leroy and
June Sallou and
Johann Bourcier and
Benoit Combemale On the Role of Computer Languages in
Scientific Computing . . . . . . . . . . 55--59
Martin Schulz and
Martin Ruefenacht and
Dieter Kranzlmüller and
Laura Brandon Schulz Accelerating HPC With Quantum Computing:
It Is a Software Challenge Too . . . . . 60--64
Anonymous \booktitleIEEE Computer Graphics and
Applications . . . . . . . . . . . . . . 64--64
Reed Milewicz and
Jeffrey Carver and
Samuel Grayson and
Travis Atkison A Secure Future for Open-Source
Computational Science and Engineering 65--69
Manish Parashar and
David Abramson Accidental Translationists: a
Perspective From the Trenches . . . . . 70--75
Anonymous IEEE Computer Society: Publications Seek
2024 Editors in Chief . . . . . . . . . 76--76
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Anonymous Masthead . . . . . . . . . . . . . . . . 3--3
Jeffrey C. Carver and
Nasir Eisty and
Hai Ah Nam and
Irina Tezaur Special Issue on the Future of Research
Software Engineers in the United States.
Part I . . . . . . . . . . . . . . . . . 4--5
William F. Godoy and
Ritu Arora and
Keith Beattie and
David E. Bernholdt and
Sarah E. Bratt and
Daniel S. Katz and
Ignacio Laguna and
Amiya K. Maji and
Addi Malviya- Thakur and
Rafael M. Mudafort and
Nitin Sukhija and
Damian Rouson and
Cindy Rubio-González and
Karan Vahi Giving Research Software Engineers a
Larger Stage Through the Better
Scientific Software Fellowship . . . . . 6--13
Addi Malviya-Thakur and
David E. Bernholdt and
William F. Godoy and
Gregory R. Watson and
Mathieu Doucet and
Mark A. Coletti and
David M. Rogers and
Marshall McDonnell and
Jay Jay Billings and
Barney Maccabe Research Software Engineering at Oak
Ridge National Laboratory . . . . . . . 14--23
Ian A. Cosden The Princeton University Research
Software Engineering Group Model:
Operational and Organizational
Approaches . . . . . . . . . . . . . . . 24--31
Anonymous IEEE Computer Society Has You Covered! 31--31
Anonymous Call for Papers: IEEE Quantum Week . . . 32--32
Ricardo Vinuesa and
Steven L. Brunton Emerging Trends in Machine Learning for
Computational Fluid Dynamics . . . . . . 33--41
Ria Patel and
Brandan Roachell and
Silvina Caíno-Lores and
Ross Ketron and
Jacob Leonard and
Nigel Tan and
Karan Vahi and
Duncan A. Brown and
Ewa Deelman and
Michela Taufer Reproducibility of the First Image of a
Black Hole in the Galaxy M87 From the
Event Horizon Telescope Collaboration 42--52
Matt Stack and
Paul Macklin and
Robert Searles and
Sunita Chandrasekaran OpenACC Acceleration of an Agent-Based
Biological Simulation Framework . . . . 53--63
Anonymous Computer Society Information . . . . . . 64--64
Allen D. Malony and
Sameer S. Shende Translating High-Performance Computing
Tools From Research to Practice:
Experiences With the TAU Performance
System . . . . . . . . . . . . . . . . . 65--71
Philippe J. Giabbanelli Hybrid Models That Combine Machine
Learning and Simulations . . . . . . . . 72--76
Srinath Kailasa and
Tingyu Wang and
Lorena A. Barba and
Timo Betcke PyExaFMM: an Exercise in Designing
High-Performance Software With Python
and Numba . . . . . . . . . . . . . . . 77--84
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Anonymous 2023 IEEE Conference on Artificial
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Anonymous Table of Contents . . . . . . . . . . . 1--2
Anonymous Masthead . . . . . . . . . . . . . . . . 3--3
Jeffrey C. Carver and
Nasir Eisty and
Hai Ah Nam and
Irina Tezaur Special Issue on the Future of Research
Software Engineers in the United States
Part II . . . . . . . . . . . . . . . . 4--5
Anonymous IEEE Computer Society Call for Papers 5--5
Miranda R. Mundt and
Keith Beattie and
Jonathan Bisila and
Charles R. Ferenbaugh and
William F. Godoy and
Rinku Gupta and
Jonathan E. Guyer and
Miriam Kiran and
Addi Malviya-Thakur and
Reed Milewicz and
Benjamin H. Sims and
Vanessa Sochat and
Joshua B. Teves For the Public Good: Connecting,
Retaining, and Recognizing Current and
Future RSEs at U.S. National Research
Laboratories and Agencies . . . . . . . 6--13
Ian A. Cosden and
Kenton McHenry and
Daniel S. Katz Research Software Engineers: Career
Entry Points and Training Gaps . . . . . 14--21
Michael A. Heroux Research Software Science: Expanding the
Impact of Research Software Engineering 22--27
Anonymous IEEE Computer Society Information . . . 28--28
Nils Wedi and
Peter Bauer and
Irina Sandu and
Jörn Hoffmann and
Sophia Sheridan and
Rafael Cereceda and
Tiago Quintino and
Daniel Thiemert and
Thomas Geenen Destination Earth: High-Performance
Computing for Weather and Climate . . . 29--37
Anonymous Over the Rainbow: 21st Century Security &
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Victorino Sanz and
Alfonso Urquia Agent-Based Modeling of Traffic Systems
Using \pkgModelica . . . . . . . . . . . 38--43
Anonymous IEEE Computer Society Has You Covered! 43--43
Dali Wang and
Peter Schwartz and
Fengming Yuan and
Peter Thornton and
Weijian Zheng Toward Ultrahigh-Resolution E3SM Land
Modeling on Exascale Computers . . . . . 44--53
Todd Gamblin and
Daniel S. Katz Overcoming Challenges to Continuous
Integration in HPC . . . . . . . . . . . 54--59
Yong Wan and
Holly A. Holman and
Charles Hansen FluoRender Script: A Case Study of
Lingua Franca in Translational Computer
Science . . . . . . . . . . . . . . . . 60--65
Sonia Lopez Alarcon and
Anne C. Elster Quantum Computing and High-Performance
Computing: Compilation Stack
Similarities . . . . . . . . . . . . . . 66--71
Anshu Dubey Good Practices for High-Quality
Scientific Computing . . . . . . . . . . 72--76
Anonymous Watts S. Humphrey Software Quality Award 76--76
Anonymous IEEE Computer Society Career Center . . C3--C3
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Anonymous Drive Diversity & Inclusion in Computing 4--4
Patrick Diehl and
Rafael Ferreira da Silva Science Gateways: Accelerating Research
and Education: Part I . . . . . . . . . 5--6
Donatello Elia and
Fabrizio Antonio and
Sandro Fiore and
Paola Nassisi and
Giovanni Aloisio A Data Space for Climate Science in the
European Open Science Cloud . . . . . . 7--15
Anonymous IEEE Computer Society Has You Covered! 15--15
Anonymous IEEE Computer Society . . . . . . . . . 16--16
Maura McLaughlin and
Nicholas Kisseberth and
Sue Ann Heatherly and
Harsha Blumer and
Timothy Olszanski and
Claire Stirm and
Jack A. Smith and
Duncan Lorimer The Pulsar Science Collaboratory:
Exploring Pulsars Through a Science
Gateway . . . . . . . . . . . . . . . . 17--24
Kerk F. Kee and
Cassandra Hayes and
Sandra Gesing and
Annelie Rugg and
Shannon Bradley and
Steven R. Brandt and
Natalie K. Meyers and
Richard P. Johnson and
Quinn Dombrowski Science Gateways and the Humanities: an
Exploratory Study of Their Rare
Partnership . . . . . . . . . . . . . . 25--33
Sandra Gesing and
Claire Stirm and
Gerhard Klimeck and
Lynn Zentner and
Su Wang and
Braulio M. Villegas-Martinez and
Hector M. Moya-Cessa and
Carrie Diaz Eaton and
Sam Donovan and
Carol Song and
Lan Zhao and
I Luk Kim and
Alejandro Strachan and
Michael Zentner and
Rajesh Kalyanam Hubzero: Community Growth for Four
Science Gateways Supporting Open Science 34--42
Joe Stubbs and
Anagha Jamthe and
Nathan Freeman and
Mike Packard and
Gilbert Curbelo and
Cody Hammock Scalable Scientific Interactive Research
Computing With Project Scinco . . . . . 43--50
Anonymous IEEE Quantum Week: Call for
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Cornelia Travnicek and
Veronika Nowak and
Rudolf Ramler and
Lukas Fischer and
Katja Bühler Examples of Long-Term Science Industry
Partnerships for Translational Computer
Science . . . . . . . . . . . . . . . . 52--56
Anonymous IEEE Computer Society Call for Papers 56--56
Raquell Holmes and
Roscoe Giles and
Dorian Arnold Diversity, Equity, and Inclusion for
Computer and Information Science and
Engineering Conferences: How Change
Happens and Four Things You Can Do Now 57--60
Konrad Hinsen The Nature of Computational Models . . . 61--66
Omair M. Zubairi and
Micah D. Schuster Numerical Modeling of Neutron Stars . . 67--71
Anonymous Over the Rainbow: 21st Century Security &
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Anonymous IEEE Computer Society Volunteer Service
Awards . . . . . . . . . . . . . . . . . 72--72
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new options upload your resume today . . C3--C3
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Patrick Diehl and
Rafael Ferreira da Silva Science Gateways: Accelerating Research
and Education Part II . . . . . . . . . 4--5
Anonymous IEEE Computer Society --- Call for
Papers . . . . . . . . . . . . . . . . . 5--5
Anonymous IEEE Quantum Week: Register Today! . . . 6--6
Sandra Gesing and
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Mary Ann McDowell and
Natalie K. Meyers and
Douglas Thain VisDict: Improving Communication Via a
Visual Dictionary in a Science Gateway 7--11
Leonardo Candela and
Donatella Castelli and
Pasquale Pagano The D4Science Experience on Virtual
Research Environment Development . . . . 12--19
Sam Donovan and
M. Drew LaMar Using Science Education Gateways to
Improve Undergraduate STEM Education:
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Anonymous \booktitleIEEE Security & Privacy . . . . 29--29
Alex Olshansky and
Cassandra Hayes and
Kerk F. Kee The Characteristics of Influencers and
Opinion Leaders of Science Gateways and
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Anonymous IEEE Computer Society Information . . . 40--40
Damian Rouson and
Konrad Hinsen and
Jeffrey Carver and
Irina Tezaur and
John Shalf and
Rio Yokota and
Anshu Dubey The 2023 Society for Industrial and
Applied Mathematics Conference on
Computational Science and Engineering 41--43
Lauren E. Margulieux and
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Masoumeh Rahimi and
Gozde Cetin Uzun Leverage Biology to Learn Rapidly From
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Anonymous \booktitleIEEE Computer Graphics and
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Anonymous IEEE Computer Society Volunteer Service
Awards . . . . . . . . . . . . . . . . . 57--57
João L. D. Comba and
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Jonathan C. Rivera and
Regis K. Romeu and
Mara Abel Data Visualization for Digital Twins . . 58--63
Micah D. Schuster Lattice Gas Cellular Automata Fluid
Dynamics: The Model of Frisch,
Hasslacher, and Pomeau . . . . . . . . . 64--68
Anonymous \booktitleIEEE Annals of the History of
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Irina Tezaur and
Josefin Ahlkrona and
Matthew Hoffman and
Mauro Perego Computational Modeling of Ice Sheets and
Glaciers . . . . . . . . . . . . . . . . 4--6
Anonymous Over the Rainbow: 21st Century Security &
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Anonymous IEEE Computer Society Has You Covered! 7--7
Yuxiang Gao and
Gourab Ghosh and
Stephen Jiménez and
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Propagation in Floating Ice Tongues . . 8--16
Anonymous IEEE Computer Society Information . . . 17--17
Douglas J. Brinkerhoff Compatible Finite Elements for Glacier
Modeling . . . . . . . . . . . . . . . . 18--28
Anonymous \booktitleIEEE Transactions on
Sustainable Computing . . . . . . . . . 28--28
Anonymous IEEE Computer Society Volunteer Service
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Shivaprakash Muruganandham and
Alexander A. Robel and
Matthew J. Hoffman and
Stephen F. Price Statistical Generation of Ocean Forcing
With Spatiotemporal Variability for Ice
Sheet Models . . . . . . . . . . . . . . 30--41
Anonymous IEEE Computer Society Call for Papers 41--41
Nathan W. Schoedl and
Emma J. MacKie and
Michael J. Field and
Eric A. Stubbs and
Allan Zhang and
Matthew Hibbs and
Mathieu Gravey A Python Multiprocessing Approach for
Fast Geostatistical Simulations of
Subglacial Topography . . . . . . . . . 42--49
Anonymous \booktitleIEEE Computer Graphics and
Applications . . . . . . . . . . . . . . 49--49
Torsten Hoefler and
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Andreas F. Prein and
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Thomas F. Stocker and
John Taylor and
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Hartwig Anzt and
Claudia Frauen and
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Milan Klöwer and
Karthik Kashinath and
Christoph Schär and
Oliver Fuhrer and
Bryan N. Lawrence Earth Virtualization Engines: a
Technical Perspective . . . . . . . . . 50--59
Akash Dhruv and
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Reproducibility in Computational
Research . . . . . . . . . . . . . . . . 60--65
Anonymous Publications Seek: 2025 Editors in Chief 66--66
Anonymous Get Published in the New \booktitleIEEE
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Kathryn R. Hamilton and
Klaus Bartschat and
Nicolas Douguet and
Sudhakar V. Pamidighantam and
Barry I. Schneider Simulation for All: The Atomic,
Molecular, and Optical Science Gateway 68--72
Philip J. Guo Six Opportunities for Scientists and
Engineers to Learn Programming Using AI
Tools Such as ChatGPT . . . . . . . . . 73--78
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Erik W. Draeger and
Andrew Siegel Exascale Was Not Inevitable; Neither Is
What Comes Next . . . . . . . . . . . . 79--83
Anonymous \booktitleIEEE Transactions on Computers 83--83
Anne Fouilloux and
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Alok Kumar Gupta and
Hamish Struthers and
Oskar Landgren and
Prashanth Dwarakanath and
Tommi Bergman and
Yanchun He Building on Communities to Further
Software Sustainability . . . . . . . . 84--88
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Jie Wang An Intuitive Tutorial to Gaussian
Process Regression . . . . . . . . . . . 4--11
William J. Harrod The Intelligence Advanced Research
Projects Activity Advanced Graph
Intelligent Logical Computing
Environment Program: Reinventing
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Anonymous IEEE Computer Society Has You Covered! 24--24
Marc Thomas Schönborn Adopting Software Engineering Concepts
in Scientific Research: Insights from
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Anonymous IEEE Computer Society Information . . . 34--34
Philip Carns and
Matthieu Dorier and
Rob Latham and
Robert B. Ross and
Shane Snyder and
Jerome Soumagne Mochi: a Case Study in Translational
Computer Science for High-Performance
Computing Data Management . . . . . . . 35--41
Curran D. Muhlberger Challenges and Techniques for
Reproducible Simulations . . . . . . . . 42--46
Anonymous IEEE Computer Society Call for Papers 46--46
Micah D. Schuster Discrete Wildfire Simulation Case Study 47--52
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