Table of contents for issues of Journal of Theoretical Biology

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Volume 202, Number 1, January 7, 2000
Volume 202, Number 2, January 21, 2000
Volume 202, Number 3, February 7, 2000
Volume 202, Number 4, February 21, 2000
Volume 203, Number 1, March 7, 2000
Volume 203, Number 2, March 21, 2000
Volume 203, Number 3, April 7, 2000
Volume 203, Number 4, April 21, 2000
Volume 204, Number 1, May 7, 2000
Volume 204, Number 2, May 21, 2000
Volume 204, Number 3, June 7, 2000
Volume 204, Number 4, June 21, 2000
Volume 205, Number 1, July 7, 2000
Volume 205, Number 2, July 21, 2000
Volume 205, Number 3, August 7, 2000
Volume 205, Number 4, August 21, 2000
Volume 206, Number 1, September 7, 2000
Volume 206, Number 2, September 21, 2000
Volume 206, Number 3, October 7, 2000
Volume 206, Number 4, October 21, 2000
Volume 207, Number 1, November 7, 2000
Volume 207, Number 2, November 21, 2000
Volume 207, Number 3, December 7, 2000
Volume 207, Number 4, December 21, 2000
Volume 208, Number 1, January 7, 2001
Volume 208, Number 2, January 21, 2001
Volume 208, Number 3, February 7, 2001
Volume 208, Number 4, February 21, 2001
Volume 209, Number 1, March 7, 2001
Volume 209, Number 2, March 21, 2001
Volume 209, Number 3, April 7, 2001
Volume 209, Number 4, April 21, 2001
Volume 210, Number 1, May 7, 2001
Volume 210, Number 2, May 21, 2001
Volume 210, Number 3, June 7, 2001
Volume 210, Number 4, June 21, 2001
Volume 211, Number 1, July 7, 2001
Volume 211, Number 2, July 21, 2001
Volume 211, Number 3, August 7, 2001
Volume 211, Number 4, August 21, 2001
Volume 212, Number 1, September 7, 2001
Volume 212, Number 2, September 21, 2001
Volume 212, Number 3, October 7, 2001
Volume 212, Number 4, October 21, 2001
Volume 213, Number 1, November 7, 2001
Volume 213, Number 2, November 21, 2001
Volume 213, Number 3, December 7, 2001
Volume 213, Number 4, December 21, 2001
Volume 214, Number 1, January 7, 2002
Volume 214, Number 2, January 21, 2002
Volume 214, Number 3, February 7, 2002
Volume 214, Number 4, February 21, 2002
Volume 215, Number 1, March 7, 2002
Volume 215, Number 2, March 21, 2002
Volume 215, Number 3, April 7, 2002
Volume 215, Number 4, April 21, 2002
Volume 216, Number 1, May 7, 2002
Volume 216, Number 2, May 21, 2002
Volume 216, Number 3, June 7, 2002
Volume 216, Number 4, June 21, 2002
Volume 217, Number 1, July 7, 2002
Volume 217, Number 2, July 21, 2002
Volume 217, Number 3, August 7, 2002
Volume 217, Number 4, August 21, 2002
Volume 218, Number 1, September 7, 2002
Volume 218, Number 2, September 21, 2002
Volume 218, Number 3, October 7, 2002
Volume 218, Number 4, October 21, 2002
Volume 219, Number 1, November 7, 2002
Volume 219, Number 2, November 21, 2002
Volume 219, Number 3, December 7, 2002
Volume 219, Number 4, December 21, 2002
Volume 220, Number 1, January 7, 2003
Volume 220, Number 2, January 21, 2003
Volume 220, Number 3, February 7, 2003
Volume 220, Number 4, February 21, 2003
Volume 221, Number 1, March 7, 2003
Volume 221, Number 2, March 21, 2003
Volume 221, Number 3, April 7, 2003
Volume 221, Number 4, April 21, 2003
Volume 222, Number 1, May 7, 2003
Volume 222, Number 2, May 21, 2003
Volume 222, Number 3, June 7, 2003
Volume 222, Number 4, June 21, 2003
Volume 223, Number 1, July 7, 2003
Volume 223, Number 2, July 21, 2003
Volume 223, Number 3, August 7, 2003
Volume 223, Number 4, August 21, 2003
Volume 224, Number 1, September 7, 2003
Volume 224, Number 2, September 21, 2003
Volume 224, Number 3, October 7, 2003
Volume 224, Number 4, October 21, 2003
Volume 225, Number 1, November 7, 2003
Volume 225, Number 2, November 21, 2003
Volume 225, Number 3, December 7, 2003
Volume 225, Number 4, December 21, 2003
Volume 226, Number 1, January 7, 2004
Volume 226, Number 2, January 21, 2004
Volume 226, Number 3, February 7, 2004
Volume 226, Number 4, February 21, 2004
Volume 227, Number 1, March 7, 2004
Volume 227, Number 2, March 21, 2004
Volume 227, Number 3, April 7, 2004
Volume 227, Number 4, April 21, 2004
Volume 228, Number 1, May 7, 2004
Volume 228, Number 2, May 21, 2004
Volume 228, Number 3, June 7, 2004
Volume 228, Number 4, June 21, 2004
Volume 229, Number 1, July 7, 2004
Volume 229, Number 2, July 21, 2004
Volume 229, Number 3, August 7, 2004
Volume 229, Number 4, August 21, 2004
Volume 230, Number 1, September 7, 2004
Volume 230, Number 2, September 21, 2004
Volume 230, Number 3, October 7, 2004
Volume 230, Number 4, October 21, 2004
Volume 231, Number 1, November 7, 2004
Volume 231, Number 2, November 21, 2004
Volume 231, Number 3, December 7, 2004
Volume 231, Number 4, December 21, 2004
Volume 232, Number 1, January 7, 2005
Volume 232, Number 2, January 21, 2005
Volume 232, Number 3, February 7, 2005
Volume 232, Number 4, February 21, 2005
Volume 233, Number 1, March 7, 2005
Volume 233, Number 2, March 21, 2005
Volume 233, Number 3, April 7, 2005
Volume 233, Number 4, April 21, 2005
Volume 234, Number 1, May 7, 2005
Volume 234, Number 2, May 21, 2005
Volume 234, Number 3, June 7, 2005
Volume 234, Number 4, June 21, 2005
Volume 235, Number 1, July 7, 2005
Volume 235, Number 2, July 21, 2005
Volume 235, Number 3, August 7, 2005
Volume 235, Number 4, August 21, 2005
Volume 236, Number 1, September 7, 2005
Volume 236, Number 2, September 21, 2005
Volume 236, Number 3, October 7, 2005
Volume 236, Number 4, October 21, 2005
Volume 237, Number 1, November 7, 2005
Volume 237, Number 2, November 21, 2005
Volume 237, Number 3, December 7, 2005
Volume 237, Number 4, December 21, 2005
Volume 238, Number 1, January 7, 2006
Volume 238, Number 2, January 21, 2006
Volume 238, Number 3, February 7, 2006
Volume 238, Number 4, February 21, 2006
Volume 239, Number 1, March 7, 2006
Volume 239, Number 2, March, 2006
Volume 239, Number 3, April 7, 2006
Volume 239, Number 4, April 21, 2006
Volume 240, Number 1, May 7, 2006
Volume 240, Number 2, May 21, 2006
Volume 240, Number 3, June 7, 2006
Volume 240, Number 4, June 21, 2006
Volume 241, Number 1, July 7, 2006
Volume 241, Number 2, July 21, 2006
Volume 241, Number 3, August 7, 2006
Volume 241, Number 4, August 21, 2006
Volume 242, Number 1, September 7, 2006
Volume 242, Number 2, September 21, 2006
Volume 242, Number 3, October 7, 2006
Volume 242, Number 4, October 21, 2006
Volume 243, Number 1, November 7, 2006
Volume 243, Number 2, November 21, 2006
Volume 243, Number 3, December 7, 2006
Volume 243, Number 4, December 21, 2006
Volume 244, Number 1, January 7, 2007
Volume 244, Number 2, January 21, 2007
Volume 244, Number 3, February 7, 2007
Volume 244, Number 4, February 21, 2007
Volume 245, Number 1, March 7, 2007
Volume 245, Number 2, March 21, 2007
Volume 245, Number 3, April 7, 2007
Volume 245, Number 4, April 21, 2007
Volume 246, Number 1, May 7, 2007
Volume 246, Number 2, May 21, 2007
Volume 246, Number 3, June 7, 2007
Volume 246, Number 4, June 21, 2007
Volume 247, Number 1, July 7, 2007
Volume 247, Number 2, July 21, 2007
Volume 247, Number 3, August 7, 2007
Volume 247, Number 4, August 21, 2007
Volume 248, Number 1, September 7, 2007
Volume 248, Number 2, September 21, 2007
Volume 248, Number 3, October 7, 2007
Volume 248, Number 4, October 21, 2007
Volume 249, Number 1, November 7, 2007
Volume 249, Number 2, November 21, 2007
Volume 249, Number 3, December 7, 2007
Volume 249, Number 4, December 21, 2007
Volume 250, Number 1, January 7, 2008
Volume 250, Number 2, January 21, 2008
Volume 250, Number 3, February 7, 2008
Volume 250, Number 4, February 21, 2008
Volume 251, Number 1, March 7, 2008
Volume 251, Number 2, March 21, 2008
Volume 251, Number 3, April 7, 2008
Volume 251, Number 4, April 21, 2008
Volume 252, Number 1, May 7, 2008
Volume 252, Number 2, May 21, 2008
Volume 252, Number 3, June, 2008
Volume 252, Number 4, June 21, 2008
Volume 253, Number 1, July 7, 2008
Volume 253, Number 2, July 21, 2008
Volume 253, Number 3, August 7, 2008
Volume 253, Number 4, August 21, 2008
Volume 254, Number 1, September 7, 2008
Volume 254, Number 2, September 21, 2008
Volume 254, Number 3, October 7, 2008
Volume 254, Number 4, October 21, 2008
Volume 255, Number 1, November 7, 2008
Volume 255, Number 2, November 21, 2008
Volume 255, Number 3, December 7, 2008
Volume 255, Number 4, December 21, 2008
Volume 256, Number 1, January 7, 2009
Volume 256, Number 2, January 21, 2009
Volume 256, Number 3, February 7, 2009
Volume 256, Number 4, February 21, 2009
Volume 257, Number 1, March 7, 2009
Volume 257, Number 2, March 21, 2009
Volume 257, Number 3, April 7, 2009
Volume 257, Number 4, April 21, 2009
Volume 258, Number 1, May 7, 2009
Volume 258, Number 2, May 21, 2009
Volume 258, Number 3, June, 2009
Volume 258, Number 4, June 21, 2009
Volume 259, Number 1, July 7, 2009
Volume 259, Number 2, July 21, 2009
Volume 259, Number 3, August 7, 2009
Volume 259, Number 4, August 21, 2009
Volume 260, Number 1, September 7, 2009
Volume 260, Number 2, September 21, 2009
Volume 260, Number 3, October 7, 2009
Volume 260, Number 4, October 21, 2009
Volume 261, Number 1, November 7, 2009
Volume 261, Number 2, November 21, 2009
Volume 261, Number 3, December 7, 2009
Volume 261, Number 4, December 21, 2009
Volume 262, Number 2, January 21, 2010
Volume 273, Number 1, March 21, 2011
Volume 289, Number ??, November 21, 2011
Volume 297, Number ??, March 21, 2012
Volume 303, Number ??, June 21, 2012
Volume 313, Number ??, November 21, 2012


Journal of Theoretical Biology
Volume 202, Number 1, January 7, 2000

             David B. Dusenbery   Selection for High Gamete Encounter
                                  Rates Explains the Success of Male and
                                  Female Mating Types  . . . . . . . . . . 1--10
           Yutaka Kobayashi and   
                 Norio Yamamura   Evolution of Seed Dormancy Due to Sib
                                  Competition: Effect of Dispersal and
                                  Inbreeding . . . . . . . . . . . . . . . 11--24
               Jon D. Pelletier   Model Assessments of the Optimal Design
                                  of Nature Reserves for Maximizing
                                  Species Longevity  . . . . . . . . . . . 25--32
               James H.-C. Wang   Substrate Deformation Determines Actin
                                  Cytoskeleton Reorganization: a
                                  Mathematical Modeling and Experimental
                                  Study  . . . . . . . . . . . . . . . . . 33--41
         Igor Rojdestvenski and   
              Michael G. Cottam   Mapping of Statistical Physics to
                                  Information Theory with Application to
                                  Biological Systems . . . . . . . . . . . 43--54
              Richard Green and   
                  E. B. Keverne   The Disparate Maternal Aunt--Uncle Ratio
                                  in Male Transsexuals: an Explanation
                                  Invoking Genomic Imprinting  . . . . . . 55--63
           Jonathan C. K. Wells   Natural Selection and Sex Differences in
                                  Morbidity and Mortality in Early Life    65--76
         Leighton Pritchard and   
                 Mark J. Dufton   Do Proteins Learn to Evolve? The
                                  Hopfield Network as a Basis for the
                                  Understanding of Protein Evolution . . . 77--86
          Kevin R. Anderson and   
          Neil H. Mendelson and   
              Joseph C. Watkins   A New Mathematical Approach Predicts
                                  Individual Cell Growth Behavior using
                                  Bacterial Population Information . . . . 87--94
                      Anonymous   Pages 1--94 (7 January 2000) . . . . . . ??

Journal of Theoretical Biology
Volume 202, Number 2, January 21, 2000

               M. J. Holmes and   
                  B. D. Sleeman   A Mathematical Model of Tumour
                                  Angiogenesis Incorporating Cellular
                                  Traction and Viscoelastic Effects  . . . 95--112
            Hans H. Diebner and   
             Martin Eichner and   
            Louis Molineaux and   
         William E. Collins and   
        Geoffrey M. Jeffery and   
                    Klaus Dietz   Modelling the Transition of Asexual
                                  Blood Stages of \bionamePlasmodium
                                  falciparum to Gametocytes  . . . . . . . 113--127
                   Jean Lehmann   Physico-chemical Constraints Connected
                                  with the Coding Properties of the
                                  Genetic System . . . . . . . . . . . . . 129--144
                Axel Kowald and   
          Thomas B. L. Kirkwood   Accumulation of Defective Mitochondria
                                  through Delayed Degradation of Damaged
                                  Organelles and Its Possible Role in the
                                  Ageing of Post-mitotic and Dividing
                                  Cells  . . . . . . . . . . . . . . . . . 145--160
              Sean A. Rands and   
        Alasdair I. Houston and   
            Catherine E. Gasson   Prey Processing in Central Place
                                  Foragers . . . . . . . . . . . . . . . . 161--174
                  T. Lesnik and   
              J. Solomovici and   
                   A. Deana and   
                 R. Ehrlich and   
                       C. Reiss   Ribosome Traffic in \bionameE. coli and
                                  Regulation of Gene Expression  . . . . . 175--185
                      Anonymous   Pages 95--185 (21 January 2000)  . . . . ??

Journal of Theoretical Biology
Volume 202, Number 3, February 7, 2000

                      Anonymous   ANNOUNCEMENT: Digital Object Identifier  i--i
                L. Valandro and   
                 B. Salvato and   
                  R. Caimmi and   
                    L. Galzigna   Isomorphism of Quasispecies and
                                  Percolation Models . . . . . . . . . . . 187--194
              Wayne P. Maddison   Testing Character Correlation using
                                  Pairwise Comparisons on a Phylogeny  . . 195--204
             Jin-Sheng Wang and   
              Tetsuya Araki and   
         Masayoshi Matsuoka and   
                 Takahira Ogawa   A Model of Photoinhibition Related to
                                  mRNA Instability in Ethylene Production
                                  by a Recombinant Cyanobacterium  . . . . 205--211
               P. D. Powell and   
            J. C. Demartini and   
                   P. Azari and   
             L. A. Stargell and   
                 L. Cordain and   
                      A. Tucker   Evolutionary Stable Strategy: a Test for
                                  Theories of Retroviral Pathology which
                                  are Based upon the Concept of Molecular
                                  Mimicry  . . . . . . . . . . . . . . . . 213--229
                James N. Mcnair   Turbulent Transport of Suspended
                                  Particles and Dispersing Benthic
                                  Organisms: The Hitting-time Distribution
                                  for the Local Exchange Model . . . . . . 231--246
                      Anonymous   Pages 187--246 (7 February 2000) . . . . ??

Journal of Theoretical Biology
Volume 202, Number 4, February 21, 2000

Pierre-André Cornillon and   
          Dominique Pontier and   
       Marie-Joëlle Rochet   Autoregressive Models for Estimating
                                  Phylogenetic and Environmental Effects:
                                  Accounting for Within-species Variations 247--256
        Brigitte Tenhumberg and   
             Andrew J. Tyre and   
                Bernie Roitberg   Stochastic Variation in Food
                                  Availability Influences Weight and Age
                                  at Maturity  . . . . . . . . . . . . . . 257--272
       Nikolay V. Dokholyan and   
         Sergey V. Buldyrev and   
              Shlomo Havlin and   
              H. Eugene Stanley   Distributions of Dimeric Tandem Repeats
                                  in Non-coding and Coding DNA Sequences   273--282
                Steven A. Frank   Specific and Non-specific Defense
                                  against Parasitic Attack . . . . . . . . 283--304
          Agnieszka Gierlik and   
            Maria Kowalczuk and   
          Pawe\l Mackiewicz and   
         Miros\law R. Dudek and   
              Stanis\law Cebrat   Is there Replication-associated
                                  Mutational Pressure in the Saccharomyces
                                  cerevisiae Genome? . . . . . . . . . . . 305--314
                      Anonymous   Pages 247--314 (21 February 2000)  . . . ??


Journal of Theoretical Biology
Volume 203, Number 1, March 7, 2000

               Patrick A. Riley   Tyrosinase Kinetics: a Semi-quantitative
                                  Model of the Mechanism of Oxidation of
                                  Monohydric and Dihydric Phenolic
                                  Substrates . . . . . . . . . . . . . . . 1--12
                John Tschirhart   General Equilibrium of an Ecosystem  . . 13--32
          Rampal S. Etienne and   
           J. A. P. Heesterbeek   On Optimal Size and Number of Reserves
                                  for Metapopulation Persistence . . . . . 33--50
            Matt J. Keeling and   
              Bryan T. Grenfell   Individual-based Perspectives on $ R_0 $ 51--61
                      Anonymous   Pages 1--61 (7 March 2000) . . . . . . . ??

Journal of Theoretical Biology
Volume 203, Number 2, March 21, 2000

               Akiko Satake and   
                      Yoh Iwasa   Pollen Coupling of Forest Trees: Forming
                                  Synchronized and Periodic Reproduction
                                  out of Chaos . . . . . . . . . . . . . . 63--84
        Yoshihiro Haraguchi and   
                   Akira Sasaki   The Evolution of Parasite Virulence and
                                  Transmission Rate in a Spatially
                                  Structured Population  . . . . . . . . . 85--96
                   F. Seebacher   Heat Transfer in a Microvascular
                                  Network: the Effect of Heart Rate on
                                  Heating and Cooling in Reptiles
                                  (\bionamePogona barbata and
                                  \bionameVaranus varius)  . . . . . . . . 97--109
       Richard H. Thornhill and   
                David W. Ussery   A Classification of Possible Routes of
                                  Darwinian Evolution  . . . . . . . . . . 111--116
           Joshua L. Cherry and   
             Frederick R. Adler   How to make a Biological Switch  . . . . 117--133
           Ezequiel A. Di Paolo   Ecological Symmetry Breaking can Favour
                                  the Evolution of Altruism in an
                                  Action-response Game . . . . . . . . . . 135--152
                     Jeff Hersh   Mathematical Analysis of the Relative
                                  Contributions of Decreased Production
                                  and Increased Peripheral Destruction in
                                  Idiopathic Thrombocytopenic Purpura and
                                  Implications in Splenectomy  . . . . . . 153--162
      Günter P. Wagner and   
                    Jason Mezey   Modeling the Evolution of Genetic
                                  Architecture: a Continuum of Alleles
                                  Model with Pairwise A$ \times $A
                                  Epistasis  . . . . . . . . . . . . . . . 163--175
                   K. Iwata and   
                K. Kawasaki and   
                   N. Shigesada   A Dynamical Model for the Growth and
                                  Size Distribution of Multiple Metastatic
                                  Tumors . . . . . . . . . . . . . . . . . 177--186
                      Anonymous   ERRATUM  . . . . . . . . . . . . . . . . 187--187
                      Anonymous   Pages 63--187 (21 March 2000)  . . . . . ??

Journal of Theoretical Biology
Volume 203, Number 3, April 7, 2000

               Samuel J. Landry   Helper T-cell Epitope Immunodominance
                                  Associated with Structurally Stable
                                  Segments of Hen Egg Lysozyme and HIV
                                  gp120  . . . . . . . . . . . . . . . . . 189--201
              Massimo Di Giulio   The Universal Ancestor Lived in a
                                  Thermophilic or Hyperthermophilic
                                  Environment  . . . . . . . . . . . . . . 203--213
                 Haruhiko Ishii   A Statistical-Mechanical Model for
                                  Regulation of Long-range Chromatin
                                  Structure and Gene Expression  . . . . . 215--228
    Christophe H. Schilling and   
             David Letscher and   
     Bernhard Ò. Palsson   Theory for the Systemic Definition of
                                  Metabolic Pathways and their use in
                                  Interpreting Metabolic Function from a
                                  Pathway-Oriented Perspective . . . . . . 229--248
    Christophe H. Schilling and   
     Bernhard Ò. Palsson   Assessment of the Metabolic Capabilities
                                  of \bionameHaemophilus influenzae Rd
                                  through a Genome-scale Pathway Analysis  249--283
            Max A. Stafford and   
             Lawrence Corey and   
                Yunzhen Cao and   
               Eric S. Daar and   
                David D. Ho and   
               Alan S. Perelson   Modeling Plasma Virus Concentration
                                  during Primary HIV Infection . . . . . . 285--301
            Bernard Derrida and   
        Susanna C. Manrubia and   
       Damián H. Zanette   On the Genealogy of a Population of
                                  Biparental Individuals . . . . . . . . . 303--315
                      Anonymous   Pages 189--315 (7 April 2000)  . . . . . ??

Journal of Theoretical Biology
Volume 203, Number 4, April 21, 2000

                     P. Hogeweg   Evolving Mechanisms of Morphogenesis: on
                                  the Interplay between Differential
                                  Adhesion and Cell Differentiation  . . . 317--333
           David P. Kraines and   
              Vivian Y. Kraines   Natural Selection of Memory-one
                                  Strategies for the Iterated Prisoner's
                                  Dilemma  . . . . . . . . . . . . . . . . 335--355
                 N. A. Hill and   
                 L. A. Plumpton   Control Strategies for the Polarotactic
                                  Orientation of the Microorganism Euglena
                                  gracilis . . . . . . . . . . . . . . . . 357--365
               A. R. Kansal and   
                S. Torquato and   
                G. R. Harsh and   
              E. A. Chiocca and   
                T. S. Deisboeck   Simulated Brain Tumor Growth Dynamics
                                  Using a Three-Dimensional Cellular
                                  Automaton  . . . . . . . . . . . . . . . 367--382
                  Buyong Ma and   
              Sandeep Kumar and   
            Chung-Jung Tsai and   
                Zengjian Hu and   
                  Ruth Nussinov   Transition-state Ensemble in Enzyme
                                  Catalysis: Possibility, Reality, or
                                  Necessity? . . . . . . . . . . . . . . . 383--397
          L. H. A. Monteiro and   
  C. H. O. Gonçalves and   
              J. R. C. Piqueira   A Condition for Successful Escape of a
                                  Mutant after Primary HIV Infection . . . 399--406
             Peter D. Munro and   
           Craig M. Jackson and   
               Donald J. Winzor   Consequences of the Non-specific Binding
                                  of a Protein to a Linear Polymer:
                                  Reconciliation of Stoichiometric and
                                  Equilibrium Titration Data for the
                                  Thrombin--Heparin Interaction  . . . . . 407--418
      Christopher F. Taylor and   
                  Paul G. Higgs   A Population Genetics Model for Multiple
                                  Quantitative Traits Exhibiting
                                  Pleiotropy and Epistasis . . . . . . . . 419--437
               Kouji Harada and   
                Takashi Ikegami   Evolution of Specificity in an Immune
                                  Network  . . . . . . . . . . . . . . . . 439--449
              J. E. I. Hokkanen   Chaotic or Periodic Variation? Looking
                                  at Crustacea Hearts  . . . . . . . . . . 451--454
                      Anonymous   Pages 317--454 (21 April 2000) . . . . . ??


Journal of Theoretical Biology
Volume 204, Number 1, May 7, 2000

           D. J. T. Sumpter and   
                D. S. Broomhead   Shape and Dynamics of Thermoregulating
                                  Honey Bee Clusters . . . . . . . . . . . 1--14
André R. O. Cavalcanti and   
Benício De Barros Neto and   
               Ricardo Ferreira   On the Classes of Aminoacyl-tRNA
                                  Synthetases and the Error Minimization
                                  in the Genetic Code  . . . . . . . . . . 15--20
             Rubin R. Aliev and   
           William Richards and   
                 John P. Wikswo   A Simple Nonlinear Model of Electrical
                                  Activity in the Intestine  . . . . . . . 21--28
           Alfredo Colosimo and   
                   Aldo De Luca   Special Factors in Biological Strings    29--46
          Peter P. Thumfort and   
           David B. Layzell and   
                Craig A. Atkins   A Simplified Approach for Modeling
                                  Diffusion into Cells . . . . . . . . . . 47--65
              George I. Zahalak   The Two-state Cross-bridge Model of
                                  Muscle is an Asymptotic Limit of
                                  Multi-state Models . . . . . . . . . . . 67--82
              John K. Kelly and   
                Michael J. Wade   Molecular Evolution near a Two-locus
                                  Balanced Polymorphism  . . . . . . . . . 83--101
               Yves Chapron and   
         Jean-Michel Peyrin and   
               Serge Crouzy and   
           Alexandre Jaegly and   
              Dominique Dormont   Theoretical Analysis of the Implication
                                  of PrP in Neuronal Death during
                                  Transmissible Subacute Spongiform
                                  Encephalopathies: Hypothesis of a PrP
                                  Oligomeric Channel . . . . . . . . . . . 103--111
              S. Kranenbarg and   
                  M. Muller and   
            J. L. W. Gielen and   
              J. H. G. Verhagen   Physical Constraints on Body Size in
                                  Teleost Embryos  . . . . . . . . . . . . 113--133
          B. R. Pittendrigh and   
                 P. Gaffney and   
                  L. L. Murdock   Deterministic Modeling of Negative
                                  Cross-resistance Strategies for use in
                                  Transgenic Host-plant Resistance . . . . 135--150
                      Anonymous   International Conference on Mathematics
                                  in Biology and Annual Meeting of the
                                  Society for Mathematical Biology ``SMB
                                  2000'' . . . . . . . . . . . . . . . . . 151--151
                      Anonymous   Pages 1--151 (7 May 2000)  . . . . . . . ??

Journal of Theoretical Biology
Volume 204, Number 2, May 21, 2000

            Jordi Bascompte and   
     Miguel A. Rodríguez   Self-disturbance as a Source of
                                  Spatiotemporal Heterogeneity: the Case
                                  of the Tallgrass Prairie . . . . . . . . 153--164
         Junko Fujita-Yoshigaki   Simulation of Regulated Exocytosis of
                                  Amylase from Salivary Parotid Acinar
                                  Cells by a Consecutive Reaction Model
                                  Comprising Two Sequential First-order
                                  Reactions  . . . . . . . . . . . . . . . 165--177
                Martin A. Nowak   The Basic Reproductive Ratio of a Word,
                                  the Maximum Size of a Lexicon  . . . . . 179--189
                     Tao Yi and   
              Sabin Lessard and   
                 Mathieu Lemire   Evolutionarily Stable Strategy in a Sex-
                                  and Frequency-Dependent Selection Model  191--200
            Philip D. Gingerich   Arithmetic or Geometric Normality of
                                  Biological Variation: an Empirical Test
                                  of Theory  . . . . . . . . . . . . . . . 201--221
             Melissa D. Cox and   
               Guy B. Blanchard   Gaseous Templates in Ant Nests . . . . . 223--238
      Christopher M. Topham and   
                 Sheraz Gul and   
             Marina Resmini and   
            Sanjiv Sonkaria and   
          Gerrard Gallacher and   
             Keith Brocklehurst   The Kinetic Basis of a General Method
                                  for the Investigation of Active Site
                                  Content of Enzymes and Catalytic
                                  Antibodies: First-Order Behaviour under
                                  Single-turnover and Cycling Conditions   239--256
              C. A. Cobbold and   
                 J. A. Sherratt   Mathematical Modelling of Nitric Oxide
                                  Activity in Wound Healing can explain
                                  Keloid and Hypertrophic Scarring . . . . 257--288
        Tomás A. Revilla   Resource Competition in Stage-structured
                                  Populations  . . . . . . . . . . . . . . 289--298
                 J. C. K. Wells   Environmental Temperature and Human
                                  Growth in Early Life . . . . . . . . . . 299--305
                 Wade Hazel and   
                  Richard Smock   Inheritance in the Conditional Strategy
                                  Revisited  . . . . . . . . . . . . . . . 307--309
                      Anonymous   Pages 153--309 (21 May 2000) . . . . . . ??

Journal of Theoretical Biology
Volume 204, Number 3, June 7, 2000

               Luis Mendoza and   
        Elena R. Alvarez-Buylla   Genetic Regulation of Root Hair
                                  Development in Arabidopsis Thaliana: a
                                  Network Model  . . . . . . . . . . . . . 311--326
           Hiroshi Hakoyama and   
                  Yoh Iwasa and   
                Junko Nakanishi   Comparing Risk Factors for Population
                                  Extinction . . . . . . . . . . . . . . . 327--336
           Hiroshi Hakoyama and   
                      Yoh Iwasa   Extinction Risk of a Density-dependent
                                  Population Estimated from a Time Series
                                  of Population Size . . . . . . . . . . . 337--359
              Zoe V. Finkel and   
                Andrew J. Irwin   Modeling Size-dependent Photosynthesis:
                                  Light Absorption and the Allometric Rule 361--369
              Kuo-Chu Chang and   
                Tong-J Chen and   
                Ying-I Peng and   
                  Te-Hei Li and   
                  Yung-Zu Tseng   Impaired Vascular Dynamics in
                                  Normotensive Diabetic Rats Induced by
                                  Streptozotocin: Tapered T-tube Model
                                  Analysis . . . . . . . . . . . . . . . . 371--380
           Olivier Thoumine and   
           Jean-Jacques Meister   A Probabilistic Model for
                                  Ligand-Cytoskeleton Transmembrane
                                  Adhesion: Predicting the Behavior of
                                  Microspheres on the Surface of Migrating
                                  Cells  . . . . . . . . . . . . . . . . . 381--392
              Peter Boderke and   
         Klaus Schittkowski and   
               Manfred Wolf and   
                 Hans P. Merkle   Modeling of Diffusion and Concurrent
                                  Metabolism in Cutaneous Tissue . . . . . 393--407
                     Duncan Roy   Learning and the Theory of Games . . . . 409--414
            James A. Powell and   
     Katharina A. M. Engelhardt   Optimal Trajectories for the
                                  Short-Distance Foraging Flights of Swans 415--430
            Ramy A. Arnaout and   
                Martin A. Nowak   Competitive Coexistence in Antiviral
                                  Immunity . . . . . . . . . . . . . . . . 431--441
                 D. R. Forsdyke   Haldane's Rule: Hybrid Sterility Affects
                                  the Heterogametic Sex First because
                                  Sexual Differentiation is on the Path to
                                  Species Differentiation  . . . . . . . . 443--452
                 Fengmin Ji and   
                     Liaofu Luo   A Hypercycle Theory of Proliferation of
                                  Viruses and Resistance to the Viruses of
                                  Transgenic Plant . . . . . . . . . . . . 453--465
            Barbara Drossel and   
                    Alan Mckane   Competitive Speciation in Quantitative
                                  Genetic Models . . . . . . . . . . . . . 467--478
                      Anonymous   Pages 311--478 (7 June 2000) . . . . . . ??

Journal of Theoretical Biology
Volume 204, Number 4, June 21, 2000

                      Anonymous   Editorial Policy . . . . . . . . . . . . 479--480
          Joshua Mitteldorf and   
             David Sloan Wilson   Population Viscosity and the Evolution
                                  of Altruism  . . . . . . . . . . . . . . 481--496
             Billi Goldberg and   
            Raphael B. Stricker   Bridging the Gap: Human Diploid Cell
                                  Strains and the Origin of AIDS . . . . . 497--503
            Caroline Haurie and   
              David C. Dale and   
           Ryszard Rudnicki and   
              Michael C. Mackey   Modeling Complex Neutrophil Dynamics in
                                  the Grey Collie  . . . . . . . . . . . . 505--519
        Michael V. Martinov and   
        Victor M. Vitvitsky and   
         Eugene V. Mosharov and   
              Ruma Banerjee and   
        Fazoil I. Ataullakhanov   A Substrate Switch: a New Mode of
                                  Regulation in the Methionine Metabolic
                                  Pathway  . . . . . . . . . . . . . . . . 521--532
                 Arthur L. Koch   Length Distribution of the Peptidoglycan
                                  Chains in the Sacculus of
                                  \bionameEscherichia coli . . . . . . . . 533--541
              Philip H. Crowley   Hawks, Doves, and Mixed-symmetry Games   543--563
      Martín A. Lema and   
          Diego A. Golombek and   
           Julián Echave   Delay Model of the Circadian Pacemaker   565--573
             J. P. Whiteley and   
             D. J. Gavaghan and   
                  C. E. W. Hahn   The Effect of Inspired Oxygen
                                  Concentration on the
                                  Ventilation--Perfusion Distribution in
                                  Inhomogeneous Lungs  . . . . . . . . . . 575--585
        Alessandro Bertuzzi and   
               Alberto Gandolfi   Cell Kinetics in a Tumour Cord . . . . . 587--599
               James Powell and   
              Bruce Kennedy and   
                Peter White and   
              Barbara Bentz and   
                Jesse Logan and   
                  David Roberts   Mathematical Elements of Attack Risk
                                  Analysis for Mountain Pine Beetles . . . 601--620
              James R. Thompson   Is the United States Country Zero for
                                  the First-World AIDS Epidemic? . . . . . 621--628
                  M. Möhle   Ancestral Processes in Population
                                  Genetics-the Coalescent  . . . . . . . . 629--638
                  Horst Malchow   Motional Instabilities in Prey--Predator
                                  Systems  . . . . . . . . . . . . . . . . 639--647
                      Anonymous   Pages 479--647 (21 June 2000)  . . . . . ??


Journal of Theoretical Biology
Volume 205, Number 1, July 7, 2000

              David W. Stephens   Cumulative Benefit Games: Achieving
                                  Cooperation when Players Discount the
                                  Future . . . . . . . . . . . . . . . . . 1--16
      Christopher J. Rennie and   
            James J. Wright and   
              Peter A. Robinson   Mechanisms of Cortical Electrical
                                  Activity and Emergence of Gamma Rhythm   17--35
                  F. Saffre and   
             A.-C. Mailleux and   
               J. L. Deneubourg   Exploratory Recruitment Plasticity in a
                                  Social Spider (\bionameAnelosimus
                                  eximius) . . . . . . . . . . . . . . . . 37--46
               M. Argentina and   
                 P. Coullet and   
                     V. Krinsky   Head-on Collisions of Waves in an
                                  Excitable FitzHugh--Nagumo System: a
                                  Transition from Wave Annihilation to
                                  Classical Wave Behavior  . . . . . . . . 47--52
         Karen M. Vereecken and   
                Els J. Dens and   
                Jan F. Van Impe   Predictive Modeling of Mixed Microbial
                                  Populations in Food Products: Evaluation
                                  of Two-species Models  . . . . . . . . . 53--72
             F. A. Davidson and   
                      S. Olsson   Translocation Induced Outgrowth of Fungi
                                  in Nutrient-free Environments  . . . . . 73--84
             Jordi Lleonart and   
                Jordi Salat and   
              Gabriel J. Torres   Removing Allometric Effects of Body Size
                                  in Morphological Analysis  . . . . . . . 85--93
            Thomas P. Weber and   
         Anders Hedenström   Optimal Stopover Decisions under Wind
                                  Influence: the Effects of Correlated
                                  Winds  . . . . . . . . . . . . . . . . . 95--104
        Nikolai A. Provorov and   
            Nikolai I. Vorobyov   Population Genetics of Rhizobia:
                                  Construction and Analysis of an
                                  ``Infection and Release'' Model  . . . . 105--119
            Hans-Rolf Gregorius   Adaptation to Spatially Heterogeneous
                                  Modifying and Adaptive Environments  . . 121--131
               Hans G. Wallraff   Simulated Navigation Based on Observed
                                  Gradients of Atmospheric Trace Gases
                                  (Models on Pigeon Homing, Part 3)  . . . 133--145
          Joshua B. Plotkin and   
                Martin A. Nowak   Language Evolution and Information
                                  Theory . . . . . . . . . . . . . . . . . 147--159
                    Miguel Toro   A Comment on Sex Ratio with Intrasex
                                  Sibling Cooperation  . . . . . . . . . . 161--164
             E. D. Williams and   
                 G. T. Williams   Cancer, Somatic Mutation and Stem Cells  165--166
               Takashi Kunisawa   Functional Role of Mycobacteriophage
                                  Transfer RNAs  . . . . . . . . . . . . . 167--170
                      Anonymous   Pages 1--170 (7 July 2000) . . . . . . . ??

Journal of Theoretical Biology
Volume 205, Number 2, July 21, 2000

               H. R. Hirsch and   
                     X. Liu and   
                   T. M. Witten   Mortality-rate Crossovers and Maximum
                                  Lifespan in Advantaged and Disadvantaged
                                  Populations: Accelerated-mortality and
                                  Sudden-death Models  . . . . . . . . . . 171--180
    Jennifer S. Enns-Ruttan and   
                Robert M. Miura   Spontaneous Secondary Spiking in
                                  Excitable Cells  . . . . . . . . . . . . 181--199
               Rick Durrett and   
                    Simon Levin   Lessons on Pattern Formation from Planet
                                  WATOR  . . . . . . . . . . . . . . . . . 201--214
        Kimberly E. Forsten and   
             Michael Fannon and   
              Matthew A. Nugent   Potential Mechanisms for the Regulation
                                  of Growth Factor Binding by Heparin  . . 215--230
       L. E. Alcaráz and   
               S. E. Blanco and   
                 O. N. Puig and   
            F. Tomás and   
                 F. H. Ferretti   Antibacterial Activity of Flavonoids
                                  Against Methicillin-resistant
                                  Staphylococcus aureus strains  . . . . . 231--240
             Lynda Fletcher and   
        Elizabeth Mcfarlane and   
             Keith Fletcher and   
           Paul A. A. Grant and   
               Iain C. Campbell   A Mathematical Model for Assessing
                                  Changes in Neurofilament Protein Levels
                                  in Neurites and Cell Bodies of
                                  Differentiating Neuroblastoma Cells  . . 241--252
           Yutaka Kobayashi and   
             Kihachiro Kikuzawa   A Single Theory Explains Two Empirical
                                  Laws Applicable to Plant Populations . . 253--260
                  Hong Qian and   
      James B. Bassingthwaighte   A Class of Flow Bifurcation Models with
                                  Lognormal Distribution and Fractal
                                  Dispersion . . . . . . . . . . . . . . . 261--268
                Matt J. Keeling   Multiplicative Moments and Measures of
                                  Persistence in Ecology . . . . . . . . . 269--281
         Emmanuelle Porcher and   
                   Marino Gatto   Quantifying the Dynamics of Prion
                                  Infection: a Bifurcation Analysis of
                                  Laurent's Model  . . . . . . . . . . . . 283--296
        Kenneth J. Broadley and   
      Paul H. J. Nederkoorn and   
             Henk Timmerman and   
                David Timms and   
                Robin H. Davies   The Ligand-Receptor-G-Protein Ternary
                                  Complex as a GTP-Synthase. Steady-State
                                  Proton Pumping and Dose-Response
                                  Relationships for $ \beta
                                  $-Adrenoceptors  . . . . . . . . . . . . 297--320
            Marc R. Roussel and   
               Didier Gonze and   
               Albert Goldbeter   Modeling the Differential Fitness of
                                  Cyanobacterial Strains whose Circadian
                                  Oscillators have Different Free-running
                                  Periods: Comparing the Mutual Inhibition
                                  and Substrate Depletion Hypotheses . . . 321--340
                      Anonymous   ERRATUM  . . . . . . . . . . . . . . . . 341--341
                      Anonymous   Pages 171--341 (21 July 2000)  . . . . . ??

Journal of Theoretical Biology
Volume 205, Number 3, August 7, 2000

                     Jorge Cubo   Process Heterochronies in Endochondral
                                  Ossification . . . . . . . . . . . . . . 343--353
             Sumanas Wanant and   
                Michael J. Quon   Insulin Receptor Binding Kinetics:
                                  Modeling and Simulation Studies  . . . . 355--364
         Thomas R. Hagedorn and   
             Laura F. Landweber   Phylogenetic Invariants and Geometry . . 365--376
                D. M. Lewis and   
                   T. J. Pedley   Planktonic Contact Rates in Homogeneous
                                  Isotropic Turbulence: Theoretical
                                  Predictions and Kinematic Simulations    377--408
             Christian V. Forst   Molecular Evolution of Catalysis . . . . 409--431
              Jordi Delgado and   
          Ricard V. Solé   Self-synchronization and Task Fulfilment
                                  in Ant Colonies  . . . . . . . . . . . . 433--441
         David K. Chelvanayagam   Interpreting the Distortion Associated
                                  with a Retinal Wholemount  . . . . . . . 443--455
             William D. Stanbro   Modeling the Interaction of
                                  Peroxynitrite with Low-density
                                  Lipoproteins. I. Plasma Levels of
                                  Peroxynitrite  . . . . . . . . . . . . . 457--464
             William D. Stanbro   Modeling the Interaction of
                                  Peroxynitrite with Low-density
                                  Lipoproteins. II: Reaction/Diffusion
                                  Model of Peroxynitrite in Low-density
                                  Lipoprotein Particles  . . . . . . . . . 465--471
             William D. Stanbro   Modeling the Interaction of
                                  Peroxynitrite with Low-density
                                  Lipoproteins. III: The Role of
                                  Antioxidants . . . . . . . . . . . . . . 473--482
           Gregory L. Moore and   
              Costas D. Maranas   Modeling DNA Mutation and Recombination
                                  for Directed Evolution Experiments . . . 483--503
           Michel Kerszberg and   
                  Lewis Wolpert   A Clock and Trail Model for Somite
                                  Formation, Specialization and
                                  Polarization . . . . . . . . . . . . . . 505--510
               Simcha Lev-Yadun   Whirled Grain in Wood and Topological
                                  Defects  . . . . . . . . . . . . . . . . 511--514
                      Anonymous   Pages 343--514 (7 August 2000) . . . . . ??

Journal of Theoretical Biology
Volume 205, Number 4, August 21, 2000

             Melissa Savage and   
              Bruce Sawhill and   
                 Manor Askenazi   Community Dynamics: What Happens When We
                                  Rerun the Tape?  . . . . . . . . . . . . 515--526
          Norman A. Johnson and   
                 Adam H. Porter   Rapid Speciation via Parallel,
                                  Directional Selection on Regulatory
                                  Genetic Pathways . . . . . . . . . . . . 527--542
            Nicholas V. Hud and   
               Frank A. L. Anet   Intercalation-Mediated Synthesis and
                                  Replication: a New Approach to the
                                  Origin of Life . . . . . . . . . . . . . 543--562
Jesús Alberto León and   
José Renato De Nóbrega   Comparative Statics of Joint
                                  Reproductive Allocation  . . . . . . . . 563--579
          Charles A. Abella and   
        Volodymyr N. Ivanov and   
                      In S. Kim   Number of Triplets in 16S rRNA Gene
                                  Related with Pathogenicity of
                                  \bionameBacillus spp. and
                                  \bionameClostridium spp. . . . . . . . . 581--586
       Isaac Salazar-Ciudad and   
Jordi Garcia-Fernández and   
          Ricard V. Solé   Gene Networks Capable of Pattern
                                  Formation: From Induction to
                                  Reaction--Diffusion  . . . . . . . . . . 587--603
           John M. Mcnamara and   
Tamás Székely and   
              James N. Webb and   
            Alasdair I. Houston   A Dynamic Game-theoretic Model of
                                  Parental Care  . . . . . . . . . . . . . 605--623
                 Marco Archetti   The Origin of Autumn Colours by
                                  Coevolution  . . . . . . . . . . . . . . 625--630
             Zong-Ling Wang and   
           Jing-Guang Zhang and   
                    Xin-Min Liu   Competition and Coexistence in Spatially
                                  Subdivided Habitats  . . . . . . . . . . 631--639
          Laurence D. Hurst and   
             James P. Randerson   Dosage, Deletions and Dominance: Simple
                                  Models of the Evolution of Gene
                                  Expression . . . . . . . . . . . . . . . 641--647
              Steinar Engen and   
        Bernt-Erik Sæther   Predicting the Time to Quasi-extinction
                                  for Populations far below their Carrying
                                  Capacity . . . . . . . . . . . . . . . . 649--658
              Massimo Di Giulio   Genetic Code Origin and the Strength of
                                  Natural Selection  . . . . . . . . . . . 659--661
                 Karl Javorszky   Interaction between Sequences and
                                  Mixtures . . . . . . . . . . . . . . . . 663--666
                      Anonymous   Pages 515--666 (21 August 2000)  . . . . ??


Journal of Theoretical Biology
Volume 206, Number 1, September 7, 2000

                Lloyd Demetrius   Thermodynamics and Evolution . . . . . . 1--16
                     Tao Yi and   
                  Sabin Lessard   Fundamental Theorem of Natural Selection
                                  and Frequency-dependent Selection:
                                  Analysis of the Matrix Game Diploid
                                  Model  . . . . . . . . . . . . . . . . . 17--25
      Benjamin B. Braunheim and   
             Steven D. Schwartz   Neural Network Methods for
                                  Identification and Optimization of
                                  Quantum Mechanical Features Needed for
                                  Bioactivity  . . . . . . . . . . . . . . 27--45
          Jason M. Erickson and   
              Anthony R. Mawson   Possible Role of Endogenous Retinoid
                                  (Vitamin A) Toxicity in the
                                  Pathophysiology of Primary Biliary
                                  Cirrhosis  . . . . . . . . . . . . . . . 47--54
                    M. J. Gagen   Information Processing in Multigame
                                  Environments Modeling the Evolution of
                                  Sex via Punctuated Equilibria  . . . . . 55--72
             Lars Gårding   A Simple Model for the Interplay of
                                  Predators, Rodents and Food  . . . . . . 73--80
               Michel Kerszberg   The Survival of Slow Reproducers . . . . 81--89
                  W. Konrad and   
          A. Roth-Nebelsick and   
                    H. Kerp and   
                        H. Hass   Transpiration and Assimilation of Early
                                  Devonian Land Plants with Axially
                                  Symmetric Telomes --- Simulations on the
                                  Tissue Level . . . . . . . . . . . . . . 91--107
          Timothy M. Lenton and   
              James E. Lovelock   Daisyworld is Darwinian: Constraints on
                                  Adaptation are Important for Planetary
                                  Self-Regulation  . . . . . . . . . . . . 109--114
               Alex Braiman and   
       Vladimir Gold'shtein and   
                      Zvi Priel   Feasibility of a Sustained Steep
                                  Ca$^{2+}$ Gradient in the Cytosol of
                                  Electrically Non-excitable Cells . . . . 115--130
               T. Johansson and   
                   P. Meier and   
                    R. Blickhan   A Finite-Element Model for the
                                  Mechanical Analysis of Skeletal Muscles  131--149
            Vladimir I. Kalinin   System-theoretical (Holistic) Approach
                                  to the Modelling of
                                  Structural-Functional Relationships of
                                  Biomolecules and Their Evolution: an
                                  Example of Triterpene Glycosides from
                                  Sea Cucumbers (\bionameEchinodermata,
                                  Holothurioidea)  . . . . . . . . . . . . 151--168
                      Anonymous   Pages 1--168 (7 September 2000)  . . . . ??

Journal of Theoretical Biology
Volume 206, Number 2, September 21, 2000

                 Herbert Gintis   Strong Reciprocity and Human Sociality   169--179
             Daniel Goldman and   
            Aleksander S. Popel   A Computational Study of the Effect of
                                  Capillary Network Anastomoses and
                                  Tortuosity on Oxygen Transport . . . . . 181--194
            Arjen Van Ooyen and   
              David J. Willshaw   Development of Nerve Connections under
                                  the Control of Neurotrophic Factors:
                                  Parallels with Consumer-Resource Systems
                                  in Population Biology  . . . . . . . . . 195--210
          Peter T. Saunders and   
           Johan H. Koeslag and   
               Jabus A. Wessels   Integral Rein Control in Physiology II:
                                  a General Model  . . . . . . . . . . . . 211--220
                 Graeme C. Hays   The Implications of Variable Remigration
                                  Intervals for the Assessment of
                                  Population Size in Marine Turtles  . . . 221--227
        István Scheuring   Habitat Diversity and Stability in a
                                  Metapopulation . . . . . . . . . . . . . 229--233
            R. Cassia-Moura and   
                 A. Popescu and   
           J. R. S. A. Lima and   
           C. A. S. Andrade and   
               L. S Ventura and   
              K. S. A. Lima and   
                      J. Rinzel   The Dynamic Activation of Colicin Ia
                                  Channels in Planar Bilayer Lipid
                                  Membrane . . . . . . . . . . . . . . . . 235--241
                 Naoaki Ono and   
                Takashi Ikegami   Self-maintenance and Self-reproduction
                                  in an Abstract Cell Model  . . . . . . . 243--253
                 Tylis Y. Chang   Towards a Quantitative Model of
                                  Immunogenicity: Counting Pathways in
                                  Sequence Space . . . . . . . . . . . . . 255--278
                Steven A. Frank   Within-host Spatial Dynamics of Viruses
                                  and Defective Interfering Particles  . . 279--290
        Jocelyn A. Laurence and   
            Peter W. French and   
           Robyn A. Lindner and   
              David R. McKenzie   Biological Effects of Electromagnetic
                                  Fields --- Mechanisms for the Effects of
                                  Pulsed Microwave Radiation on Protein
                                  Conformation . . . . . . . . . . . . . . 291--298
                   David Taylor   Scaling Effects in the Fatigue Strength
                                  of Bones from Different Animals  . . . . 299--306
            C. Alff-Steinberger   A comparative Study of Mutations in
                                  \bionameEscherichia coli and Salmonella
                                  typhimurium shows that Codon
                                  Conservation is Strongly Correlated with
                                  Codon Usage  . . . . . . . . . . . . . . 307--311
              M. Feughelman and   
                   B. K. Willis   Thiol-disulfide Interchange a Potential
                                  Key to Conformational Change Associated
                                  with Amyloid Fibril Formation  . . . . . 313--315
              Reiner Veitia and   
               Chris Ottolenghi   Placing Parallel Stranded DNA in an
                                  Evolutionary Context . . . . . . . . . . 317--322
                      Anonymous   Pages 169--322 (21 September 2000) . . . ??

Journal of Theoretical Biology
Volume 206, Number 3, October 7, 2000

                  Guy Dodin and   
       Pierre Vandergheynst and   
             Patrick Levoir and   
          Christine Cordier and   
              Laurence Marcourt   Fourier and Wavelet Transform Analysis,
                                  a Tool for Visualizing Regular Patterns
                                  in DNA Sequences . . . . . . . . . . . . 323--326
           Juan P. Aparicio and   
           Angel F. Capurro and   
         Carlos Castillo-Chavez   Transmission and Dynamics of
                                  Tuberculosis on Generalized Households   327--341
        Wamberto A. Varanda and   
        Larry S. Liebovitch and   
   José N. Figueiroa and   
            Romildo A. Nogueira   Hurst Analysis Applied to the Study of
                                  Single Calcium-activated Potassium
                                  Channel Kinetics . . . . . . . . . . . . 343--353
                 John W. Pepper   Relatedness in Trait Group Models of
                                  Social Evolution . . . . . . . . . . . . 355--368
        Nicholas C. Grassly and   
         Arndt Von Haeseler and   
              David C. Krakauer   Error, Population Structure and the
                                  Origin of Diverse Sign Systems . . . . . 369--378
                 Olaf Weiss and   
Miguel A. Jiménez-Montaño and   
               Hanspeter Herzel   Information Content of Protein Sequences 379--386
             Ayowumi Fatade and   
             Jerry Snowhite and   
               Michael E. Green   A Resonance Model gives the Response to
                                  Membrane Potential for an Ion Channel:
                                  II. Simplification of the Calculation,
                                  and Prediction of Stochastic Resonance   387--393
            Paul R. Shorten and   
            A. Bruce Robson and   
           Alan E. Mckinnon and   
               David J. N. Wall   CRH-induced Electrical Activity and
                                  Calcium Signalling in Pituitary
                                  Corticotrophs  . . . . . . . . . . . . . 395--405
          Ivan V. Surovtsev and   
            Ivan A. Razumov and   
     Vyacheslav M. Nekrasov and   
       Alexander N. Shvalov and   
            Juhani T. Soini and   
          Valeri P. Maltsev and   
        Alexander K. Petrov and   
           Valeri B. Loktev and   
           Andrei V. Chernyshev   Mathematical Modeling the Kinetics of
                                  Cell Distribution in the Process of
                                  Ligand--Receptor Binding . . . . . . . . 407--417
               V. Sitaramam and   
                 Zuben E. Sauna   What does a Common Channel for
                                  Electrolytes and Non-electrolytes in the
                                  Sperm Mean?  . . . . . . . . . . . . . . 419--428
                  A. Rachev and   
                 E. Manoach and   
                   J. Berry and   
                    J. E. Moore   A Model of Stress-induced Geometrical
                                  Remodeling of Vessel Segments Adjacent
                                  to Stents and Artery/Graft Anastomoses   429--443
               William H. James   The Hypothesized Hormonal Control of
                                  Offspring Sex Ratio: Evidence from
                                  Families Ascertained by Schizophrenia
                                  and Epilepsy . . . . . . . . . . . . . . 445--447
                      Anonymous   Pages 323--447 (7 October 2000)  . . . . ??

Journal of Theoretical Biology
Volume 206, Number 4, October 21, 2000

               Barry Mcleod and   
                Nigel Burroughs   Defective Deletion Mutant Amplification  449--464
                  Guy Sella and   
               Michael Lachmann   On the Dynamic Persistence of
                                  Cooperation: How Lower Individual
                                  Fitness Induces Higher Survivability . . 465--485
                 M. A. Ball and   
                   G. A. Parker   Sperm Competition Games: a Comparison of
                                  Loaded Raffle Models and their
                                  Biological Implications  . . . . . . . . 487--506
           Dariusz Latowski and   
           Kvetoslava Burda and   
             Kazimierz Strzalka   A Mathematical Model Describing Kinetics
                                  of Conversion of Violaxanthin to
                                  Zeaxanthin via Intermediate
                                  Antheraxanthin by the Xanthophyll Cycle
                                  Enzyme Violaxanthin De-epoxidase . . . . 507--514
                  G. A. Oda and   
               I. L. Caldas and   
          J. R. C. Piqueira and   
           J. M. Waterhouse and   
                  M. D. Marques   Coupled Biological Oscillators in a Cave
                                  Insect . . . . . . . . . . . . . . . . . 515--524
                Dirk Holste and   
                 Ivo Grosse and   
         Sergey V. Buldyrev and   
          H. Eugene Stanley and   
               Hanspeter Herzel   Optimization of Coding Potentials Using
                                  Positional Dependence of Nucleotide
                                  Frequencies  . . . . . . . . . . . . . . 525--537
               Andrew Yates and   
           Claudia Bergmann and   
          J. Leo Van Hemmen and   
             Jaroslav Stark and   
                  Robin Callard   Cytokine-modulated Regulation of Helper
                                  T Cell Populations . . . . . . . . . . . 539--560
                    Klaus Lange   Microvillar Ion Channels: Cytoskeletal
                                  Modulation of Ion Fluxes . . . . . . . . 561--584
Moisés Santillán and   
          Joseph M. Mahaffy and   
      Jacques Bélair and   
              Michael C. Mackey   Regulation of Platelet Production: The
                                  Normal Response to Perturbation and
                                  Cyclical Platelet Disease  . . . . . . . 585--603
                 Brian Topp and   
            Keith Promislow and   
              Gerda Devries and   
            Robert M. Miura and   
              Diane T. Finegood   A Model of $ \beta $-Cell Mass, Insulin,
                                  and Glucose Kinetics: Pathways to
                                  Diabetes . . . . . . . . . . . . . . . . 605--619
                      Anonymous   Pages 449--619 (21 October 2000) . . . . ??


Journal of Theoretical Biology
Volume 207, Number 1, November 7, 2000

              Carola Tralau and   
            Gerhard Greller and   
            Markus Pajatsch and   
              Winfried Boos and   
                     Erich Bohl   Mathematical Treatment of Transport Data
                                  of Bacterial Transport Systems to
                                  Estimate Limitation in Diffusion through
                                  the Outer Membrane . . . . . . . . . . . 1--14
          George C. Theodoridis   On Selection Mechanisms during Initial
                                  Evolution and on the Possible Role of
                                  Ionic Balance  . . . . . . . . . . . . . 15--20
                  Guy Beauchamp   Learning Rules for Social Foragers:
                                  Implications for the Producer--Scrounger
                                  Game and Ideal Free Distribution Theory  21--35
              John K. Kelly and   
               Scott Williamson   Predicting Response to Selection on a
                                  Quantitative Trait: a Comparison between
                                  Models for Mixed-mating Populations  . . 37--56
       Maria Luisa Da Silva and   
José Roberto C. Piqueira and   
        Jacques M. E. Vielliard   Using Shannon Entropy on Measuring the
                                  Individual Variability in the
                                  Rufous-bellied Thrush \bionameTurdus
                                  rufiventris Vocal Communication  . . . . 57--64
              Becca Asquith and   
          Charles R. M. Bangham   The Role of Cytotoxic T Lymphocytes in
                                  Human T-cell Lymphotropic Virus Type 1
                                  Infection  . . . . . . . . . . . . . . . 65--79
          Joshua B. Plotkin and   
           Matthew D. Potts and   
               Nandi Leslie and   
               N. Manokaran and   
            James Lafrankie and   
                Peter S. Ashton   Species-area Curves, Spatial
                                  Aggregation, and Habitat Specialization
                                  in Tropical Forests  . . . . . . . . . . 81--99
              Andrea Peluso and   
       Mariangela Di Donato and   
            Roberto Improta and   
       Gloria Anna Ada Saracino   A Plausible Mechanism of Electron
                                  Transfer between Quinones in
                                  Photosynthetic Reaction Centers  . . . . 101--105
          Frederick W. Cummings   A Model of Pattern Formation Based on
                                  Signaling Pathways . . . . . . . . . . . 107--116
             David B. Fogel and   
               Hans-Georg Beyer   Do Evolutionary Processes Minimize
                                  Expected Losses? . . . . . . . . . . . . 117--123
              J. S. Edwards and   
                  B. O. Palsson   Multiple Steady States in Kinetic Models
                                  of Red Cell Metabolism . . . . . . . . . 125--127
                      Anonymous   Pages 1--127 (7 November 2000) . . . . . ??

Journal of Theoretical Biology
Volume 207, Number 2, November 21, 2000

                 Paul F. Pinsky   A Multi-stage Model of Adenoma
                                  Development  . . . . . . . . . . . . . . 129--143
                  Xiping Bi and   
                  Dixie J. Goss   Kinetic Proofreading Scanning Models for
                                  Eukaryotic Translational Initiation: the
                                  Cap and Poly(A) Tail Dependency of
                                  Translation  . . . . . . . . . . . . . . 145--157
           Josiane Courteau and   
                  Sabin Lessard   Optimal Sex Ratios in Structured
                                  Populations  . . . . . . . . . . . . . . 159--175
                    Lu Tsai and   
                     Liaofu Luo   A Statistical Mechanical Model for
                                  Predicting B-DNA Curvature and
                                  Flexibility  . . . . . . . . . . . . . . 177--194
          André J. Noest   Designing Lymphocyte Functional
                                  Structure for Optimal Signal Detection:
                                  Voil\`a, T cells . . . . . . . . . . . . 195--216
            F. D. L. Kelpin and   
          M. A. Kirkilionis and   
                     B. W. Kooi   Numerical Methods and Parameter
                                  Estimation of a Structured Population
                                  Model with Discrete Events in the Life
                                  History  . . . . . . . . . . . . . . . . 217--230
          Kalet León and   
       Rolando Peréz and   
               Agustin Lage and   
                 Jorge Carneiro   Modelling T-cell-Mediated Suppression
                                  Dependent on Interactions in
                                  Multicellular Conjugates . . . . . . . . 231--254
              Alexey D. Gruzdev   DNA Topology in Heterochromatin (a
                                  Hypothesis)  . . . . . . . . . . . . . . 255--264
                  Luis Acerenza   Design of Large Metabolic Responses.
                                  Constraints and Sensitivity Analysis . . 265--282
           Henrik Mouritsen and   
                  Ole Mouritsen   A Mathematical Expectation Model for
                                  Bird Navigation based on the
                                  Clock-and-Compass Strategy . . . . . . . 283--291
           Christopher B. Scott   Energy Expenditure of Heavy to Severe
                                  Exercise and Recovery  . . . . . . . . . 293--297
                      Anonymous   Pages 129--297 (21 November 2000)  . . . ??

Journal of Theoretical Biology
Volume 207, Number 3, December 7, 2000

          Mitchell B. Baker and   
                     Amos Zemel   Josef Bertrand Catches Some Ants:
                                  Unbiased Random Trajectories for the
                                  Simulation of Position Effects in Groups 299--303
              J. R. Collier and   
               D. Mcinerney and   
                 S. Schnell and   
                P. K. Maini and   
             D. J. Gavaghan and   
                 P. Houston and   
                    C. D. Stern   A Cell Cycle Model for Somitogenesis:
                                  Mathematical Formulation and Numerical
                                  Simulation . . . . . . . . . . . . . . . 305--316
                   P. Boily and   
            P. H. Kvadsheim and   
                   L. P. Folkow   Cutaneous Heat Flux Models do not
                                  Reliably Predict Metabolic Rates of
                                  Marine Mammals . . . . . . . . . . . . . 317--323
            David R. Powell and   
              Lloyd Allison and   
                  Trevor I. Dix   Fast, Optimal Alignment of Three
                                  Sequences Using Linear Gap Costs . . . . 325--336
                Isabelle Chuine   A Unified Model for Budburst of Trees    337--347
              Leah P. Macfadyen   Regulation of Competence Development in
                                  Haemophilus influenzae: Proposed
                                  Competence Regulatory Elements are
                                  CRP-Binding Sites  . . . . . . . . . . . 349--359
         Iva Marija Toli\'c and   
             Erik Mosekilde and   
                   Jeppe Sturis   Modeling the Insulin--Glucose Feedback
                                  System: The Significance of Pulsatile
                                  Insulin Secretion  . . . . . . . . . . . 361--375
          Janica Ylikarjula and   
              Susanna Alaja and   
               Jouni Laakso and   
                    David Tesar   Effects of Patch Number and Dispersal
                                  Patterns on Population Dynamics and
                                  Synchrony  . . . . . . . . . . . . . . . 377--387
                   M. Broom and   
                C. Cannings and   
                  G. T. Vickers   A Sequential-Arrivals Model of Territory
                                  Acquisition II . . . . . . . . . . . . . 389--403
                 J. Barilla and   
            M. Lokajícek   The Role of Oxygen in DNA Damage by
                                  Ionizing Particles . . . . . . . . . . . 405--414
           Robert H. Dillon and   
                  Lisa J. Fauci   An Integrative Model of Internal Axoneme
                                  Mechanics and External Fluid Dynamics in
                                  Ciliary Beating  . . . . . . . . . . . . 415--430
               A. R. Kansal and   
                S. Torquato and   
              E. A. Chiocca and   
                T. S. Deisboeck   Emergence of a Subpopulation in a
                                  Computational Model of Tumor Growth  . . 431--441
                      Anonymous   The 6th International Conference on
                                  Mathematical Population Dynamics 3--8
                                  June 2001 Marrakech, Morocco . . . . . . 443--443
                      Anonymous   Pages 299--443 (7 December 2000) . . . . ??

Journal of Theoretical Biology
Volume 207, Number 4, December 21, 2000

                 David Gall and   
                 Erika Baus and   
             Genevi\`eve Dupont   Activation of the Liver Glycogen
                                  Phosphorylase by Ca$^{2+}$ Oscillations:
                                  a Theoretical Study  . . . . . . . . . . 445--454
                    David Elder   Split Gene Origin and Periodic Introns   455--472
            Mads Kærn and   
          Michael Menzinger and   
                   Axel Hunding   Segmentation and Somitogenesis Derived
                                  from Phase Dynamics in Growing
                                  Oscillatory Media  . . . . . . . . . . . 473--493
           Thomas F. Hansen and   
        Ashley J. R. Carter and   
                   Chi-Hua Chiu   Gene Conversion may aid Adaptive Peak
                                  Shifts . . . . . . . . . . . . . . . . . 495--511
             Gerda De Vries and   
                 Arthur Sherman   Channel Sharing in Pancreatic $ \beta
                                  $-Cells Revisited: Enhancement of
                                  Emergent Bursting by Noise . . . . . . . 513--530
            Harold B. Dowse and   
              Steven Norton and   
                Bruce D. Sidell   The Estimation of the Diffusion Constant
                                  and Solubility of O$_2$ in Tissue Using
                                  Kinetics . . . . . . . . . . . . . . . . 531--541
                Takuyo Aita and   
                  Yuzuru Husimi   Theory of Evolutionary Molecular
                                  Engineering through Simultaneous
                                  Accumulation of Advantageous Mutations   543--556
                 Ricardo Murphy   Some Compartmental Models of the Root:
                                  Steady-state Behavior  . . . . . . . . . 557--576
           Leonard Hayflick and   
                Stanley Plotkin   Bridging the Gap --- a Reply . . . . . . 577--578
                      Anonymous   Pages 445--578 (21 December 2000)  . . . ??


Journal of Theoretical Biology
Volume 208, Number 1, January 7, 2001

             S. Cossy Isasi and   
               G. J. Sibona and   
                   C. A. Condat   A Simple Model for the Interaction
                                  Between \bionameT. cruzi and its
                                  Antibodies During Chagas Infection . . . 1--13
                    Shigui Ruan   Oscillations in Plankton Models with
                                  Nutrient Recycling . . . . . . . . . . . 15--26
        Michael H. F. Wilkinson   Predation in the Presence of Decoys: An
                                  Inhibitory Factor on Pathogen Control by
                                  Bacteriophages or Bdellovibrios in Dense
                                  and Diverse Ecosystems . . . . . . . . . 27--36
         Robert J. H. Payne and   
           Vincent A. A. Jansen   Understanding Bacteriophage Therapy as a
                                  Density-dependent Kinetic Process  . . . 37--48
              B. R. Frieden and   
                A. Plastino and   
                   B. H. Soffer   Population Genetics from an Information
                                  Perspective  . . . . . . . . . . . . . . 49--64
               Ziding Zhang and   
               Zhi-Rong Sun and   
                Chun-Ting Zhang   A New Approach to Predict the
                                  Helix/Strand Content of Globular
                                  Proteins . . . . . . . . . . . . . . . . 65--78
             Joseph Henrich and   
                    Robert Boyd   Why People Punish Defectors: Weak
                                  Conformist Transmission can Stabilize
                                  Costly Enforcement of Norms in
                                  Cooperative Dilemmas . . . . . . . . . . 79--89
            Barbara Drossel and   
              Paul G. Higgs and   
                 Alan J. Mckane   The Influence of Predator--Prey
                                  Population Dynamics on the Long-term
                                  Evolution of Food Web Structure  . . . . 91--107
               Karina Yusim and   
                 Shlomo Nir and   
                     Noam Lahav   A Model for Proto-tRNA Loading . . . . . 109--116
           Shmuel Assouline and   
                 Shlomo Nir and   
                     Noam Lahav   Simulation of Non-enzymatic
                                  Template-directed Synthesis of
                                  Oligonucleotides and Peptides  . . . . . 117--125
                      Anonymous   Pages 1--125 (7 January 2001)  . . . . . ??

Journal of Theoretical Biology
Volume 208, Number 2, January 21, 2001

             G. R. Spedding and   
               C. J. Pennycuick   Uncertainty Calculations for Theoretical
                                  Flight Power Curves  . . . . . . . . . . 127--139
              Massimo Di Giulio   The Origin of the Genetic Code cannot be
                                  Studied using Measurements based on the
                                  PAM Matrix because this Matrix Reflects
                                  the Code Itself, Making any such
                                  Analyses Tautologous . . . . . . . . . . 141--144
              Axel Dietrich and   
                    Willem Been   Memory and DNA . . . . . . . . . . . . . 145--149
              Gerhard Gierz and   
       Salomon Bartnicki-Garcia   A Three-Dimensional Model of Fungal
                                  Morphogenesis Based on the Vesicle
                                  Supply Center Concept  . . . . . . . . . 151--164
        Henrique M. Pereira and   
              Deborah M. Gordon   A Trade-off in Task Allocation between
                                  Sensitivity to the Environment and
                                  Response Time  . . . . . . . . . . . . . 165--184
                G. Chiorino and   
              J. A. J. Metz and   
                D. Tomasoni and   
                      P. Ubezio   Desynchronization Rate in Cell
                                  Populations: Mathematical Modeling and
                                  Experimental Data  . . . . . . . . . . . 185--199
Snæbjörn Pálsson   The Effects of Deleterious Mutations in
                                  Cyclically Parthenogenetic Organisms . . 201--214
         Richard H. Clayton and   
              Andrew Bailey and   
         Vadim N. Biktashev and   
                 Arun V. Holden   Re-entrant Cardiac Arrhythmias in
                                  Computational Models of Long QT
                                  Myocardium . . . . . . . . . . . . . . . 215--225
             James M. Hyman and   
                     Jia Li and   
                 E. Ann Stanley   The Initialization and Sensitivity of
                                  Multigroup Models for the Transmission
                                  of HIV . . . . . . . . . . . . . . . . . 227--249
                      Anonymous   Pages 127--249 (21 January 2001) . . . . ??

Journal of Theoretical Biology
Volume 208, Number 3, February 7, 2001

               G. L. Alonso and   
      D. A. González and   
                  D. Takara and   
               M. A. Ostuni and   
           G. A. Sánchez   Kinetic Analysis of a Model of the
                                  Sarcoplasmic Reticulum Ca-ATPase, with
                                  Variable Stoichiometry, which Enhances
                                  the Amount and the Rate of Ca Transport  251--260
     Jan-Hendrik S. Hofmeyr and   
             Hans V. Westerhoff   Building the Cellular Puzzle: Control in
                                  Multi-level Reaction Networks  . . . . . 261--285
              Iwajlo M. Kandjov   Heat and Water Rate Transfer Processes
                                  in the Human Respiratory Tract at
                                  Various Altitudes  . . . . . . . . . . . 287--293
                Silke Thoms and   
              Markus Pahlow and   
         Dieter A. Wolf-Gladrow   Model of the Carbon Concentrating
                                  Mechanism in Chloroplasts of Eukaryotic
                                  Algae  . . . . . . . . . . . . . . . . . 295--313
          Steven V. Viscido and   
             Matthew Miller and   
                David S. Wethey   The Response of a Selfish Herd to an
                                  Attack from Outside the Group Perimeter  315--328
     J. Trommershäuser and   
                    S. Titz and   
               B. U. Keller and   
                   A. Zippelius   Variability of Excitatory Currents due
                                  to Single-Channel Noise, Receptor Number
                                  and Morphological Heterogeneity  . . . . 329--343
             David B. Dusenbery   Performance of Basic Strategies for
                                  following Gradients in Two Dimensions    345--360
          Jay E. Mittenthal and   
            Bertrand Clarke and   
          Thomas G. Waddell and   
                  Glenn Fawcett   A New Method for Assembling Metabolic
                                  Networks, with Application to the Krebs
                                  Citric Acid Cycle  . . . . . . . . . . . 361--382
             Subhendu Ghosh and   
                   Amal K. Bera   The Role of H$^+$ Concentration on the
                                  Capacitance of a Membrane Channel
                                  Protein  . . . . . . . . . . . . . . . . 383--384
                David Ratel and   
            Sylvie Boisseau and   
       Valéry Nasser and   
     François Berger and   
                    Didier Wion   Programmed Cell Death or Cell Death
                                  Programme? That is the Question  . . . . 385--386
                      Anonymous   Pages 251--386 (7 February 2001) . . . . ??

Journal of Theoretical Biology
Volume 208, Number 4, February 21, 2001

                 Eric M. Kramer   A Mathematical Model of Auxin-mediated
                                  Radial Growth in Trees . . . . . . . . . 387--397
                 Stephen Cooper   Revisiting the Relationship of the
                                  Mammalian G1 Phase to Cell
                                  Differentiation  . . . . . . . . . . . . 399--402
             Peter J. Woolf and   
           Terry P. Kenakin and   
          Jennifer J. Linderman   Uncovering Biases in High Throughput
                                  Screens of G-Protein Coupled Receptors   403--418
              Karen M. Page and   
            Philip K. Maini and   
        Nicholas A. M. Monk and   
               Claudio D. Stern   A Model of Primitive Streak Initiation
                                  in the Chick Embryo  . . . . . . . . . . 419--438
               Mirko Wagner and   
                    Jens Timmer   Model Selection in Non-nested Hidden
                                  Markov Models for Ion Channel Gating . . 439--450
               D. C. Sanyal and   
                     N. K. Maji   Thermoregulation through Skin under
                                  Variable Atmospheric and Physiological
                                  Conditions . . . . . . . . . . . . . . . 451--456
                 Ilan Eshel and   
                   Avner Shaked   Partnership  . . . . . . . . . . . . . . 457--474
            A. D. Cristillo and   
             J. R. Mortimer and   
             I. H. Barrette and   
            T. P. Lillicrap and   
                 D. R. Forsdyke   Double-stranded RNA as a Not-self Alarm
                                  Signal: to Evade, most Viruses
                                  Purine-load their RNAs, but some
                                  (HTLV-1, Epstein--Barr) Pyrimidine-load  475--491
              Brian D. Fath and   
          Bernard C. Patten and   
                    Jae S. Choi   Complementarity of Ecological Goal
                                  Functions  . . . . . . . . . . . . . . . 493--506
                  Lilach Hadany   A Conflict Between Two Evolutionary
                                  Levels in Trees  . . . . . . . . . . . . 507--521
                      Anonymous   Pages 387--521 (21 February 2001)  . . . ??


Journal of Theoretical Biology
Volume 209, Number 1, March 7, 2001

               William H. James   A Prediction on the Sex Ratios of
                                  Piglets  . . . . . . . . . . . . . . . . 1--2
                 T. Marique and   
              J. Wérenne   Control of 92 kDa Collagenase Secretion
                                  in Mammalian Cells by Modulation of AP-1
                                  Activity: an Experimentally based
                                  Theoretical Study  . . . . . . . . . . . 3--8
                P. S. Dodds and   
              D. H. Rothman and   
                    J. S. Weitz   Re-examination of the ``3/4-law'' of
                                  Metabolism . . . . . . . . . . . . . . . 9--27
                Peter Ruoff and   
           Merete Vinsjevik and   
       Christian Monnerjahn and   
                 Ludger Rensing   The Goodwin Model: Simulating the Effect
                                  of Light Pulses on the Circadian
                                  Sporulation Rhythm of Neurospora Crassa  29--42
        Natalia L. Komarova and   
              Partha Niyogi and   
                Martin A. Nowak   The Evolutionary Dynamics of Grammar
                                  Acquisition  . . . . . . . . . . . . . . 43--59
              Jianfeng Feng and   
                  Guibin Li and   
                David Brown and   
                  Hilary Buxton   Balance between Four Types of Synaptic
                                  Input for the Integrate-and-Fire Model   61--73
         Rebecca F. Furlong and   
          John F. Y. Brookfield   Inference of Past Population Expansion
                                  from the Timing of Coalescence Events in
                                  a Gene Genealogy . . . . . . . . . . . . 75--86
         Michael A. Fishman and   
                Arnon Lotem and   
                     Lewi Stone   Heterogeneity Stabilizes Reciprocal
                                  Altruism Interactions  . . . . . . . . . 87--95
               William H. James   Hypothesis: Gonadal Hormones Act as
                                  Confounders in Epidemiological Studies
                                  of the Associations between Some
                                  Behavioural Risk Factors and Some
                                  Pathological Conditions  . . . . . . . . 97--102
            Dean A. Fennell and   
              Finbarr E. Cotter   A Dynamical Systems Model to Simulate
                                  the Perturbation Kinetics of Gene
                                  Expression by Antisense Oligonucleotides 103--112
       Louise Kold Andersen and   
              Michael C. Mackey   Resonance in Periodic Chemotherapy: a
                                  Case Study of Acute Myelogenous Leukemia 113--130
                      Anonymous   Pages 1--130 (7 March 2001)  . . . . . . ??

Journal of Theoretical Biology
Volume 209, Number 2, March 21, 2001

          Richard M. Kliman and   
            Bryan T. Rogers and   
             Mohamed A. F. Noor   Differences in (G+C) Content between
                                  Species: a Commentary on Forsdyke's
                                  ``Chromosomal Viewpoint'' of Speciation  131--140
João Carlos Marques Magalhães and   
            Décio Krause   Suppes Predicate for Genetics and
                                  Natural Selection  . . . . . . . . . . . 141--153
               P. D. Powell and   
                J. C. Demartini   Retroviral Antibody Binding of the MHC
                                  Class II Molecule: a Biochemical
                                  Influence on CD4 T Cell Differentiation
                                  in HIV Infection?  . . . . . . . . . . . 155--160
             R. S. Cantrell and   
                   Chris Cosner   Spatial Heterogeneity and Critical Patch
                                  Size: Area Effects via Diffusion in
                                  Closed Environments  . . . . . . . . . . 161--171
              Karen M. Page and   
                Martin A. Nowak   A Generalized Adaptive Dynamics
                                  Framework can Describe the Evolutionary
                                  Ultimatum Game . . . . . . . . . . . . . 173--179
             Masayuki Nashimoto   The RNA/Protein Symmetry Hypothesis:
                                  Experimental Support for Reverse
                                  Translation of Primitive Proteins  . . . 181--187
             Daniel Goldman and   
            Aleksander S. Popel   A Computational Study of the Effect of
                                  Vasomotion on Oxygen Transport from
                                  Capillary Networks . . . . . . . . . . . 189--199
                B. S. Jones and   
                 W. F. Lynn and   
                    M. O. Stone   Thermal Modeling of Snake Infrared
                                  Reception: Evidence for Limited
                                  Detection Range  . . . . . . . . . . . . 201--211
              Kazuhiro Aoki and   
               Mitsuru Furusawa   Promotion of Evolution by Intracellular
                                  Coexistence of Mutator and Normal DNA
                                  Polymerases  . . . . . . . . . . . . . . 213--222
             Jose-Leonel Torres   Biological Power Laws and Darwin's
                                  Principle  . . . . . . . . . . . . . . . 223--232
                  Emi Shudo and   
                      Yoh Iwasa   Inducible Defense against Pathogens and
                                  Parasites: Optimal Choice among Multiple
                                  Options  . . . . . . . . . . . . . . . . 233--247
             Sidharth Jaggi and   
                  Amitabh Joshi   Incorporating Spatial Variation in
                                  Density Enhances the Stability of Simple
                                  Population Dynamics Models . . . . . . . 249--255
                      Anonymous   Pages 131--255 (21 March 2001) . . . . . ??

Journal of Theoretical Biology
Volume 209, Number 3, April 7, 2001

           Jaap A. Kaandorp and   
              Peter M. A. Sloot   Morphological Models of Radiate
                                  Accretive Growth and the Influence of
                                  Hydrodynamics  . . . . . . . . . . . . . 257--274
           Bernard Korzeniewski   Cybernetic Formulation of the Definition
                                  of Life  . . . . . . . . . . . . . . . . 275--286
                Ryusuke Kon and   
              Yasuhiro Takeuchi   The Effect of Evolution on
                                  Host-Parasitoid Systems  . . . . . . . . 287--302
              V. A. Karasev and   
                 V. E. Stefanov   Topological Nature of the Genetic Code   303--317
                Thomas Alerstam   Detours in Bird Migration  . . . . . . . 319--331
       Priyanga Amarasekare and   
                Hugh Possingham   Patch Dynamics and Metapopulation
                                  Theory: the Case of Successional Species 333--344
              Massimo Di Giulio   The Non-universality of the Genetic
                                  Code: the Universal Ancestor was a
                                  Progenote  . . . . . . . . . . . . . . . 345--349
            James N. Mcnair and   
               J. Denis Newbold   Turbulent Transport of Suspended
                                  Particles and Dispersing Benthic
                                  Organisms: the Hitting-distance Problem
                                  for the Local Exchange Model . . . . . . 351--369
                Andrew R. Solow   A Comment on Two Models of the
                                  Remigration Interval in Marine Turtles   371--372
                Jordi Bascompte   Aggregate Statistical Measures and
                                  Metapopulation Dynamics  . . . . . . . . 373--379
                      Anonymous   ANNOUNCEMENT . . . . . . . . . . . . . . 381--381
                      Anonymous   Pages 257--381 (7 April 2001)  . . . . . ??

Journal of Theoretical Biology
Volume 209, Number 4, April 21, 2001

                   Wang Zhi and   
                  Zhao Ming and   
                     Yu Qi-Xing   Modeling of Branching Structures of
                                  Plants . . . . . . . . . . . . . . . . . 383--394
           Chikara Furusawa and   
                Kunihiko Kaneko   Theory of Robustness of Irreversible
                                  Differentiation in a Stem Cell System:
                                  Chaos Hypothesis . . . . . . . . . . . . 395--416
             Aaron B. Watts and   
                     Hasu Patel   The Theory and Application of Transition
                                  State $ p K_a $ Values: The Reaction of
                                  Papain with a Series of Trimethylene
                                  Disulphide Reactivity Probes . . . . . . 417--429
             J. P. Whiteley and   
             D. J. Gavaghan and   
                  C. E. W. Hahn   Modelling Inert Gas Exchange in Tissue
                                  and Mixed-Venous Blood Return to the
                                  Lungs  . . . . . . . . . . . . . . . . . 431--443
         John E. A. Bertram and   
                     Andy Ruina   Multiple Walking Speed-frequency
                                  Relations are Predicted by Constrained
                                  Optimization . . . . . . . . . . . . . . 445--453
              Annie Jonsson and   
                     Bo Ebenman   Are Certain Life Histories Particularly
                                  Prone to Local Extinction? . . . . . . . 455--463
         H. A. Van Den Berg and   
                 D. A. Rand and   
                N. J. Burroughs   A Reliable and Safe T Cell Repertoire
                                  based on Low-affinity T Cell Receptors   465--486
                Daniel J. Lacks   Regressive Biological Evolution due to
                                  Environmental Change . . . . . . . . . . 487--491
              Christopher Hayes   Hypothesis: Hemimelia and the
                                  Maintenance of Pentadactyly? . . . . . . 493--495
             Tomoyuki Miura and   
                  Pierre Sonigo   A Mathematical Model for Experimental
                                  Gene Evolution . . . . . . . . . . . . . 497--502
                      Anonymous   ESMTB Summer School: Biology and
                                  Mathematics of Cells: Physiology,
                                  Kinetics and Evolution . . . . . . . . . 503--503
                      Anonymous   Pages 383--503 (21 April 2001) . . . . . ??


Journal of Theoretical Biology
Volume 210, Number 1, May 7, 2001

                Ken Binmore and   
                Larry Samuelson   Can Mixed Strategies be Stable in
                                  Asymmetric Games?  . . . . . . . . . . . 1--14
                   L. Judas and   
            M. Lokajícek   Cell Inactivation by Ionizing Particles
                                  and the Shapes of Survival Curves  . . . 15--21
    Maarten D. J. Schreuder and   
            Carol A. Brewer and   
                  Carlton Heine   Modelled Influences of Non-exchanging
                                  Trichomes on Leaf Boundary Layers and
                                  Gas Exchange . . . . . . . . . . . . . . 23--32
               Ralf Möller   Do Insects Use Templates or Parameters
                                  for Landmark Navigation? . . . . . . . . 33--45
             Brian Charlesworth   Patterns of Age-specific Means and
                                  Genetic Variances of Mortality Rates
                                  Predicted by the Mutation-Accumulation
                                  Theory of Ageing . . . . . . . . . . . . 47--65
                Soyoka Muko and   
             Kazuhiko Sakai and   
                      Yoh Iwasa   Dynamics of Marine Sessile Organisms
                                  with Space-limited Growth and
                                  Recruitment: Application to Corals . . . 67--80
              Paul R. Armsworth   Directed Motion in the Sea: Efficient
                                  Swimming by Reef Fish Larvae . . . . . . 81--91
                  J. H. Mao and   
              K. A. Lindsay and   
                R. J. Mairs and   
                  T. E. Wheldon   The Effect of Tissue-specific Growth
                                  Patterns of Target Stem Cells on the
                                  Spectrum of Tumours Resulting from
                                  Multistage Tumorigenesis . . . . . . . . 93--100
     Michael S. Longuet-Higgins   Geometrical Constraints on the
                                  Development of a Diatom  . . . . . . . . 101--105
    Balakrishna Subramanian and   
               David E. Axelrod   Progression of Heterogeneous Breast
                                  Tumors . . . . . . . . . . . . . . . . . 107--119
           Bonnie Anderson Bray   The Role of Hyaluronan in the Pulmonary
                                  Alveolus . . . . . . . . . . . . . . . . 121--130
                      Anonymous   Third Georgia Tech--Emory International
                                  Conference on Bioinformatics . . . . . . 131--132
                      Anonymous   Pages 1--132 (7 May 2001)  . . . . . . . ??

Journal of Theoretical Biology
Volume 210, Number 2, May 21, 2001

                 Dr A. Hastings   In Memoriam: Joel E. Keizer  . . . . . . 133--139
                     Bo Yan and   
            Robert M. Miura and   
                    Yi-Der Chen   Direction Reversal of
                                  Fluctuation-induced Biased Brownian
                                  Motion on Distorted Ratchets . . . . . . 141--150
        Christopher P. Fall and   
                 Joel E. Keizer   Mitochondrial Modulation of
                                  Intracellular Ca$^{2+}$ Signaling  . . . 151--165
               Didier Gonze and   
               Albert Goldbeter   A Model for a Network of
                                  Phosphorylation-dephosphorylation Cycles
                                  Displaying the Dynamics of Dominoes and
                                  Clocks . . . . . . . . . . . . . . . . . 167--186
            Gregory Benison and   
                Joel Keizer and   
             Leo M. Chalupa and   
              David W. Robinson   Modeling Temporal Behavior of Postnatal
                                  Cat Retinal Ganglion Cells . . . . . . . 187--199
                  C. T. Lee and   
               M. F. Hoopes and   
                   J. Diehl and   
               W. Gilliland and   
                   G. Huxel and   
               E. V. Leaver and   
                  K. Mccann and   
              J. Umbanhowar and   
                    A. Mogilner   Non-local Concepts and Models in Biology 201--219
               Abdul I. Barakat   A Model for Shear Stress-induced
                                  Deformation of a Flow Sensor on the
                                  Surface of Vascular Endothelial Cells    221--236
            Dmitry Medvedev and   
        Alexei A. Stuchebrukhov   DNA Repair Mechanism by Photolyase:
                                  Electron Transfer Path from the
                                  Photolyase Catalytic Cofactor FADH$^-$
                                  to DNA Thymine Dimer . . . . . . . . . . 237--248
              John J. Tyson and   
                     Bela Novak   Regulation of the Eukaryotic Cell Cycle:
                                  Molecular Antagonism, Hysteresis, and
                                  Irreversible Transitions . . . . . . . . 249--263
                      Anonymous   Pages 133--263 (21 May 2001) . . . . . . ??

Journal of Theoretical Biology
Volume 210, Number 3, June 7, 2001

      Michael Meyer-Hermann and   
            Andreas Deutsch and   
                 Michal Or-Guil   Recycling Probability and Dynamical
                                  Properties of Germinal Center Reactions  265--285
          Robert K. Swihart and   
                Zhilan Feng and   
            Norman A. Slade and   
             Doran M. Mason and   
              Thomas M. Gehring   Effects of Habitat Destruction and
                                  Resource Supplementation in a
                                  Predator--Prey Metapopulation Model  . . 287--303
                Bo-Ping Han and   
               Milan Straskraba   Control Mechanisms of Diel Vertical
                                  Migration: Theoretical Assumptions . . . 305--318
                     D. Eichler   Slow Proliferation as a Survival
                                  Advantage: an Attempt to Resolve a
                                  Paradox  . . . . . . . . . . . . . . . . 319--325
      József Baranyi and   
                     Carmen Pin   A Parallel Study on Bacterial Growth and
                                  Inactivation . . . . . . . . . . . . . . 327--336
                Sven Kurbel and   
            Beatrica Kurbel and   
         Branko Dmitrovi\'c and   
                Aleksandar Vcev   A Model of the Gastric Gland Ejection
                                  Cycle: Low Ejection Fractions Require
                                  Reduction of the Glandular Dead Space    337--343
               William H. James   Handedness, Birth Weight, Mortality and
                                  Barker's Hypothesis  . . . . . . . . . . 345--346
                D. M. Lewis and   
                   T. J. Pedley   The Influence of Turbulence on Plankton
                                  Predation Strategies . . . . . . . . . . 347--365
                 Audun Bakk and   
       Johan S. Hòye and   
                Alex Hansen and   
                    Kim Sneppen   Thermodynamical Implications of a
                                  Protein Model with Water Interactions    367--373
                Tim A. Hely and   
               Bruce Graham and   
                Arjen Van Ooyen   A Computational Model of Dendrite
                                  Elongation and Branching Based on MAP2
                                  Phosphorylation  . . . . . . . . . . . . 375--384
               Simcha Lev-Yadun   Aposematic (warning) Coloration
                                  Associated with Thorns in Higher Plants  385--388
              Peter Zioupos and   
             John D. Currey and   
                Adri\`a Casinos   Tensile Fatigue in Bone: Are Cycles-, or
                                  Time to Failure, or Both, Important? . . 389--399
                      Anonymous   Pages 265--399 (7 June 2001) . . . . . . ??

Journal of Theoretical Biology
Volume 210, Number 4, June 21, 2001

             Hiroki R. Ueda and   
         Masatoshi Hagiwara and   
                 Hiroaki Kitano   Robust Oscillations within the
                                  Interlocked Feedback Model of Drosophila
                                  Circadian Rhythm . . . . . . . . . . . . 401--406
              Cino Pertoldi and   
 Torsten Nygaard Kristensen and   
               Volker Loeschcke   A New Method for Estimating
                                  Environmental Variability for Clonal
                                  Organisms, and the Use of Fluctuating
                                  Asymmetry as an Indicator of
                                  Developmental Instability  . . . . . . . 407--410
                 Shu-Yun Le and   
                Wei-Min Liu and   
                Jih-H. Chen and   
                Jacob V. Maizel   Local Thermodynamic Stability Scores Are
                                  Well Represented by a Non-central
                                  Student's $t$ Distribution . . . . . . . 411--423
                 D. R. Forsdyke   Adaptive Value of Polymorphism in
                                  Intracellular Self/Not-self
                                  Discrimination?  . . . . . . . . . . . . 425--434
              Stephen P. Ellner   Pair Approximation for Lattice Models
                                  with Multiple Interaction Scales . . . . 435--447
              Mark A. Lewis and   
                 Paul Moorcroft   ESS Analysis of Mechanistic Models for
                                  Territoriality: the Value of Scent Marks
                                  in Spatial Resource Partitioning . . . . 449--461
                A. Y. Cheer and   
                   Y. Ogami and   
                S. L. Sanderson   Computational Fluid Dynamics in the Oral
                                  Cavity of Ram Suspension-Feeding Fishes  463--474
           Hirotami T. Imai and   
                 Yoko Satta and   
               Naoyuki Takahata   Integrative Study on Chromosome
                                  Evolution of Mammals, Ants and Wasps
                                  Based on the Minimum Interaction Theory  475--497
                      Anonymous   Pages 401--497 (21 June 2001)  . . . . . ??


Journal of Theoretical Biology
Volume 211, Number 1, July 7, 2001

              Ross Cressman and   
        József Garay and   
                 Josef Hofbauer   Evolutionary Stability Concepts for
                                  $N$-species Frequency-dependent
                                  Interactions . . . . . . . . . . . . . . 1--10
           Ingemar Nåsell   Extinction and Quasi-stationarity in the
                                  Verhulst Logistic Model  . . . . . . . . 11--27
                Wayne S. Kendal   The Size Distribution of Human
                                  Hematogenous Metastases  . . . . . . . . 29--38
         Aasim G. Chowdhary and   
                John H. Challis   The Biomechanics of an Overarm Throwing
                                  Task: a Simulation Model Examination of
                                  Optimal Timing of Muscle Activations . . 39--53
              Tony Farquhar and   
           Helen Meyer-Phillips   Relative Safety Factors against Global
                                  Buckling, Anchorage Rotation, and Tissue
                                  Rupture in Wheat . . . . . . . . . . . . 55--65
              Sergio R. P. Line   Molecular Morphogenetic Fields in the
                                  Development of Human Dentition . . . . . 67--75
                      Anonymous   Pages 1--75 (7 July 2001)  . . . . . . . ??

Journal of Theoretical Biology
Volume 211, Number 2, July 21, 2001

              Joji M. Otaki and   
               Stuart Firestein   Length Analyses of Mammalian
                                  G-protein-coupled Receptors  . . . . . . 77--100
            James A. Mackintosh   The Antimicrobial Properties of
                                  Melanocytes, Melanosomes and Melanin and
                                  the Evolution of Black Skin  . . . . . . 101--113
       Lucas Sánchez and   
                 Denis Thieffry   A Logical Analysis of the Drosophila
                                  Gap-gene System  . . . . . . . . . . . . 115--141
                A. Mogilner and   
               A. J. Fisher and   
                   R. J. Baskin   Structural Changes in the Neck Linker of
                                  Kinesin Explain the Load Dependence of
                                  the Motor's Mechanical Cycle . . . . . . 143--157
                Daniel B. Neill   Optimality Under Noise: Higher Memory
                                  Strategies for the Alternating
                                  Prisoner's Dilemma . . . . . . . . . . . 159--180
              Michael Mogie and   
                   Moya Cousins   Are Sample Sizes Usually at least an
                                  Order of Magnitude Too Low for Reliable
                                  Estimates of Leaf Asymmetry? . . . . . . 181--185
                      Anonymous   Pages 77--185 (21 July 2001) . . . . . . ??

Journal of Theoretical Biology
Volume 211, Number 3, August 7, 2001

                Masakado Kawata   The Influence of Neighborhood Size and
                                  Habitat Shape on the Accumulation of
                                  Deleterious Mutations  . . . . . . . . . 187--199
           Per östborn and   
        Björn Wohlfart and   
            Gunnar Ohlén   Arrhythmia as a Result of Poor
                                  Intercellular Coupling in the Sinus
                                  Node: a Simulation Study . . . . . . . . 201--217
           Per östborn and   
        Gunnar Ohlén and   
            Björn Wohlfart   Simulated Sinoatrial Exit Blocks
                                  Explained by Circle Map Analysis . . . . 219--227
              R. D. Cousens and   
                A. A. Rawlinson   When Will Plant Morphology Affect the
                                  Shape of a Seed Dispersal ``Kernel''?    229--238
Karl-Hartmut Von Wangenheim and   
            Hans-Peter Peterson   A Mechanism of Intracellular Timing and
                                  its Cooperation with Extracellular
                                  Signals in Controlling Cell
                                  Proliferation and Differentiation, an
                                  Amended Hypothesis . . . . . . . . . . . 239--251
       Steven H. Kleinstein and   
            Jaswinder Pal Singh   Toward Quantitative Simulation of
                                  Germinal Center Dynamics: Biological and
                                  Modeling Insights from Experimental
                                  Validation . . . . . . . . . . . . . . . 253--275
               Mark A. Changizi   Universal Scaling Laws for Hierarchical
                                  Complexity in Languages, Organisms,
                                  Behaviors and other Combinatorial
                                  Systems  . . . . . . . . . . . . . . . . 277--295
                      Anonymous   Pages 187--295 (7 August 2001) . . . . . ??

Journal of Theoretical Biology
Volume 211, Number 4, August 21, 2001

             Sido D. Mylius and   
                   Odo Diekmann   The Resident Strikes Back:
                                  Invader-Induced Switching of Resident
                                  Attractor  . . . . . . . . . . . . . . . 297--311
                 D. Wenzler and   
               M. Reinhardt and   
                  L. Fukshansky   Topology of an Intracellular
                                  Transduction Chain (Phototropism of
                                  Phycomyces ): 1. Joint Review of
                                  Functional, Temporal, and Spatial
                                  Aspects  . . . . . . . . . . . . . . . . 313--332
               M. Reinhardt and   
                 D. Wenzler and   
                  L. Fukshansky   Topology of an Intracellular
                                  Transduction Chain (Phototropism of
                                  Phycomyces ): 2. Mathematical Model of
                                  Pattern Transduction . . . . . . . . . . 333--345
             Toshiyuki Nakajima   Probabilities of Encounters between
                                  Objects in Biological Systems:
                                  Meta-observer View . . . . . . . . . . . 347--363
          B. R. Pittendrigh and   
                  P. J. Gaffney   Pesticide Resistance: Can we make it a
                                  Renewable Resource?  . . . . . . . . . . 365--375
           Arnold S. Tannenbaum   The Sense of Consciousness . . . . . . . 377--391
                   C. Utzny and   
                N. J. Burroughs   Long-term Stability of Diverse
                                  Immunological Memory . . . . . . . . . . 393--402
                 A. Hoffman and   
             Lee M. Spetner and   
                       M. Burke   Cessation of Cell Proliferation by
                                  Adjustment of Cell Redox Potential . . . 403--407
              C. J. Proctor and   
                   M. Broom and   
                   G. D. Ruxton   Modelling antipredator vigilance and
                                  flight response in group foragers when
                                  warning signals are ambiguous  . . . . . 409--417
             Dominik Wodarz and   
           Vincent A. A. Jansen   The Role of T Cell Help for Anti-viral
                                  CTL Responses  . . . . . . . . . . . . . 419--432
                      Anonymous   Erratum: In Memoriam: Joel E. Keiser . . 433--433
                      Anonymous   Pages 297--433 (21 August 2001)  . . . . ??


Journal of Theoretical Biology
Volume 212, Number 1, September 7, 2001

            V. V. Gafiychuk and   
              I. A. Lubashevsky   On the Principles of the Vascular
                                  Network Branching  . . . . . . . . . . . 1--9
                U. Bastolla and   
             M. Lässig and   
             S. C. Manrubia and   
                  A. Valleriani   Diversity Patterns from Ecological
                                  Models at Dynamical Equilibrium  . . . . 11--34
          Aderonke Babajide and   
              Robert Farber and   
            Ivo L. Hofacker and   
                 Jeff Inman and   
            Alan S. Lapedes and   
               Peter F. Stadler   Exploring Protein Sequence Space Using
                                  Knowledge-based Potentials . . . . . . . 35--46
                    V. Paar and   
                   N. Pavin and   
                  M. Rosandi\'c   Link between Truncated Fractals and
                                  Coupled Oscillators in Biological
                                  Systems  . . . . . . . . . . . . . . . . 47--56
               Alan Lapedes and   
                  Robert Farber   The Geometry of Shape Space: Application
                                  to Influenza . . . . . . . . . . . . . . 57--69
               M. Danielsen and   
                  J. T. Ottesen   Describing the Pumping Heart as a
                                  Pressure Source  . . . . . . . . . . . . 71--81
              Stephen Davis and   
               Nicholas Bax and   
                    Peter Grewe   Engineered Underdominance Allows
                                  Efficient and Economical Introgression
                                  of Traits into Pest Populations  . . . . 83--98
    István Scheuring and   
     Eörs Szathmáry   Survival of Replicators with Parabolic
                                  Growth Tendency and Exponential Decay    99--105
             Shneior Lifson and   
                   Hanna Lifson   Coexistence and Darwinian Selection
                                  among Replicators: Response to the
                                  Preceding Paper by Scheuring and
                                  Szathmary  . . . . . . . . . . . . . . . 107--109
             M. E. Gracheva and   
                   R. Toral and   
                   J. D. Gunton   Stochastic Effects in Intercellular
                                  Calcium Spiking in Hepatocytes . . . . . 111--125
                      Anonymous   ERRATUM: a Logical Analysis of the
                                  Drosophila Gap-gene System . . . . . . . 127--127
                      Anonymous   ERRATUM: The Antimicrobial Properties of
                                  Melanocytes, Melanosomes and Melanin and
                                  the Evolution of Black Skin  . . . . . . 128--128
                      Anonymous   Pages 1--128 (7 September 2001)  . . . . ??

Journal of Theoretical Biology
Volume 212, Number 2, September 21, 2001

              Eric Poe Xing and   
             Denise M. Wolf and   
               Inna Dubchak and   
            Sylvia Spengler and   
               Manfred Zorn and   
               Ilya Muchnik and   
             Casimir Kulikowski   Automatic Discovery of Sub-molecular
                                  Sequence Domains in Multi-aligned
                                  Sequences: a Dynamic Programming
                                  Algorithm for Multiple Alignment
                                  Segmentation . . . . . . . . . . . . . . 129--139
     Sebastian J. Schreiber and   
          Nicholas J. Mills and   
            Andrew P. Gutierrez   Host-limited Dynamics of Autoparasitoids 141--153
              Ania Majewska and   
                   Rafael Yuste   Topology of Gap Junction Networks in
                                  \bionameC. elegans . . . . . . . . . . . 155--167
                  A. Ryndin and   
                V. Kirzhner and   
                    E. Nevo and   
                       A. Korol   Polymorphism Maintenance in Populations
                                  with Mixed Random Mating and Apomixis
                                  Subjected to Stabilizing and Cyclical
                                  Selection  . . . . . . . . . . . . . . . 169--181
                       M. Zamir   Fractal Dimensions and Multifractility
                                  in Vascular Branching  . . . . . . . . . 183--190
 Alicia Bailón-Plaza and   
 Marjolein C. H. Van Der Meulen   A Mathematical Framework to Study the
                                  Effects of Growth Factor Influences on
                                  Fracture Healing . . . . . . . . . . . . 191--209
               Julia C. Fox and   
                Tony M. Keaveny   Trabecular Eccentricity and Bone
                                  Adaptation . . . . . . . . . . . . . . . 211--221
                   Xin Chen and   
                  Joel E. Cohen   Global Stability, Local Stability and
                                  Permanence in Model Food Webs  . . . . . 223--235
         P. P. F. Hanegraaf and   
                   E. B. Muller   The Dynamics of the Macromolecular
                                  Composition of Biomass . . . . . . . . . 237--251
            Ivana Beardmore and   
               K. A. Jane White   Spreading Disease through Social
                                  Groupings in Competition . . . . . . . . 253--269
                      Anonymous   ERRATUM: The Sense of Conciousness . . . 271--271
                      Anonymous   Pages 129--271 (21 September 2001) . . . ??

Journal of Theoretical Biology
Volume 212, Number 3, October 7, 2001

               William H. James   Finger-length Ratios, Sexual Orientation
                                  and Offspring Sex Ratios . . . . . . . . 273--274
             A. A. Bulychev and   
            A. A. Polezhaev and   
                S. V. Zykov and   
           T. Yu. Pljusnina and   
         G. Yu. Riznichenko and   
                A. B. Rubin and   
            W. Jantoß and   
                V. S. Zykov and   
              S. C. Müller   Light-triggered pH Banding Profile in
                                  Chara Cells Revealed with a Scanning pH
                                  Microprobe and its Relation to
                                  Self-Organization Phenomena  . . . . . . 275--294
      Joydev Chattopadhayay and   
              Ramrup Sarkar and   
Maria Elena Fritzsche-Hoballah and   
         Ted C. J. Turlings and   
     Louis-Félix Bersier   Parasitoids may Determine Plant Fitness
                                  --- a Mathematical Model Based on
                                  Experimental Data  . . . . . . . . . . . 295--302
          Frederick W. Cummings   The Interaction of Surface Geometry with
                                  Morphogens . . . . . . . . . . . . . . . 303--313
            Roger G. Bowers and   
            David E. Hodgkinson   Community Dynamics, Trade-offs, Invasion
                                  Criteria and the Evolution of Host
                                  Resistance to Microparasites . . . . . . 315--331
             Rob J. De Boer and   
  António A. Freitas and   
               Alan S. Perelson   Resource Competition Determines
                                  Selection of B Cell Repertoires  . . . . 333--343
               Thomas Flatt and   
              Nicolas Maire and   
                Michael Doebeli   A Bit of Sex Stabilizes Host--Parasite
                                  Dynamics . . . . . . . . . . . . . . . . 345--354
               Petr Král   Species Orthogonalization  . . . . . . . 355--366
         S. D. Varfolomeyev and   
                 K. G. Gurevich   The Hyperexponential Growth of the Human
                                  Population on a Macrohistorical Scale    367--372
                Richard Law and   
        Judith L. Bronstein and   
        Régis Ferri\`ere   On Mutualists and Exploiters:
                                  Plant-insect Coevolution in Pollinating
                                  Seed-parasite Systems  . . . . . . . . . 373--389
               N. B. Grover and   
        C. Coust\`ere-Yakir and   
              C. E. Helmstetter   Synchronous Cultures from the Baby
                                  Machine: Anatomy of a Model  . . . . . . 391--398
        Adrian L. R. Thomas and   
               Graham K. Taylor   Animal Flight Dynamics I. Stability in
                                  Gliding Flight . . . . . . . . . . . . . 399--424
                      Anonymous   Pages 273--424 (7 October 2001)  . . . . ??

Journal of Theoretical Biology
Volume 212, Number 4, October 21, 2001

                  Heinz Haschke   A Biokinetic Model to Describe
                                  Consequences of Inhibition/Stimulation
                                  in DNA-Proofreading and Repair --- 1.
                                  Development of the Model . . . . . . . . 425--456
       Christopher C. Byrne and   
             Jeffrey A. Kurland   Self-deception in an Evolutionary Game   457--480
           Y. Guédon and   
D. Barthélémy and   
                Y. Caraglio and   
                      E. Costes   Pattern Analysis in Branching and
                                  Axillary Flowering Sequences . . . . . . 481--520
              S. Kranenbarg and   
          J. H. G. Verhagen and   
                  M. Muller and   
              J. L. Van Leeuwen   Consequences of Forced Convection for
                                  the Constraints on Size and Shape in
                                  Embryos  . . . . . . . . . . . . . . . . 521--533
       Michael D. Radmacher and   
              Richard Simon and   
             Richard Desper and   
             Raymond Taetle and   
 Alejandro A. Schäffer and   
                 Mark A. Nelson   Graph Models of Oncogenesis with an
                                  Application to Melanoma  . . . . . . . . 535--548
          Sergei Petrovskii and   
                    Bai-Lian Li   Increased Coupling Between
                                  Subpopulations in a Spatially Structured
                                  Environment Can Lead to Population
                                  Outbreaks  . . . . . . . . . . . . . . . 549--562
              Yongwimon Lenbury   International Conference on
                                  Computational Mathematics and Modeling   563--563
                      Anonymous   ERRATUM: a Model for a Network of
                                  Phosphorylation-dephosphorylation Cycles
                                  Displaying the Dynamics of Dominoes and
                                  Clocks . . . . . . . . . . . . . . . . . 565--565
                      Anonymous   Pages 425--565 (21 October 2001) . . . . ??


Journal of Theoretical Biology
Volume 213, Number 1, November 7, 2001

             Ivan P. Gorlov and   
               Olga Yu. Gorlova   Cost-Benefit Analysis of Recombination
                                  and its Application for Understanding of
                                  Chiasma Interference . . . . . . . . . . 1--8
               Takashi Kunisawa   Gene Arrangements and Phylogeny in the
                                  Class Proteobacteria . . . . . . . . . . 9--19
           Hadi Quesneville and   
Dominique Anxolabéh\`ere   Genetic Algorithm-based Model of
                                  Evolutionary Dynamics of Class II
                                  Transposable Elements  . . . . . . . . . 21--30
                  Tatsuo Atsumi   An Ultrasonic Motor Model for Bacterial
                                  Flagellar Motors . . . . . . . . . . . . 31--51
          Mary Ann Harrison and   
             Ying-Cheng Lai and   
                 Robert D. Holt   Dynamical Mechanism for Coexistence of
                                  Dispersing Species . . . . . . . . . . . 53--72
           Markus W. Covert and   
    Christophe H. Schilling and   
               Bernhard Palsson   Regulation of Gene Expression in Flux
                                  Balance Models of Metabolism . . . . . . 73--88
                  Joanna Tyrcha   Age-dependent Cell Cycle Models  . . . . 89--101
             Herbert Gintis and   
           Eric Alden Smith and   
                  Samuel Bowles   Costly Signaling and Cooperation . . . . 103--119
                      Anonymous   Pages 1--119 (7 November 2001) . . . . . ??

Journal of Theoretical Biology
Volume 213, Number 2, November 21, 2001

                    Bo-Ping Han   Photosynthesis-Irradiance Response at
                                  Physiological Level: a Mechanistic Model 121--127
               Jinya Otsuka and   
               Yosuke Kawai and   
               Nobuyoshi Sugaya   The Influence of Selection on the
                                  Evolutionary Distance Estimated from the
                                  Base Changes Observed between Homologous
                                  Nucleotide Sequences . . . . . . . . . . 129--144
              David C. Krakauer   Selective Imitation for a Private Sign
                                  System . . . . . . . . . . . . . . . . . 145--157
  Jérôme Lacan and   
            Christian J. Michel   Analysis of a Circular Code Model  . . . 159--170
            Johannes Jaeger and   
               Brian C. Goodwin   A Cellular Oscillator Model for Periodic
                                  Pattern Formation  . . . . . . . . . . . 171--181
               D. S. Houser and   
                  R. Howard and   
                     S. Ridgway   Can Diving-induced Tissue Nitrogen
                                  Supersaturation Increase the Chance of
                                  Acoustically Driven Bubble Growth in
                                  Marine Mammals?  . . . . . . . . . . . . 183--195
              A. D. Farmery and   
                 J. P. Whiteley   A Mathematical Model of Electron
                                  Transfer Within the Mitochondrial
                                  Respiratory Cytochromes  . . . . . . . . 197--207
                 Ilan Eshel and   
                 Emilia Sansone   Multiple Asymmetry and Concord
                                  Resolutions of a Conflict  . . . . . . . 209--222
              M. D. Hanigan and   
             L. A. Crompton and   
              J. A. Metcalf and   
                      J. France   Modelling Mammary Metabolism in the
                                  Dairy Cow to Predict Milk Constituent
                                  Yield, with Emphasis on Amino Acid
                                  Metabolism and Milk Protein Production:
                                  Model Construction . . . . . . . . . . . 223--239
  Bärbel M. R. Stadler and   
           Peter F. Stadler and   
      Günter P. Wagner and   
                 Walter Fontana   The Topology of the Possible: Formal
                                  Spaces Underlying Patterns of
                                  Evolutionary Change  . . . . . . . . . . 241--274
            Nicky J. Welton and   
            Alasdair I. Houston   A Theoretical Investigation into the
                                  Direct and Indirect Effects of State on
                                  the Risk of Predation  . . . . . . . . . 275--297
                  William Harms   Cooperative Boundary Populations: the
                                  Evolution of Cooperation on Mortality
                                  Risk Gradients . . . . . . . . . . . . . 299--313
                      Anonymous   Pages 121--313 (21 November 2001)  . . . ??

Journal of Theoretical Biology
Volume 213, Number 3, December 7, 2001

            Aalpen A. Patel and   
        Edward T. Gawlinski and   
           Susan K. Lemieux and   
              Robert A. Gatenby   A Cellular Automaton Model of Early
                                  Tumor Growth and Invasion: The Effects
                                  of Native Tissue Vascularity and
                                  Increased Anaerobic Tumor Metabolism . . 315--331
                Robert E. Kelly   Tripedal Knuckle-walking: a Proposal for
                                  the Evolution of Human Locomotion and
                                  Handedness . . . . . . . . . . . . . . . 333--358
               Wayne Dawson and   
               Kazuo Suzuki and   
                 Kenji Yamamoto   A Physical Origin for Functional Domain
                                  Structure in Nucleic Acids as Evidenced
                                  by Cross-linking Entropy: I  . . . . . . 359--386
               Wayne Dawson and   
               Kazuo Suzuki and   
                 Kenji Yamamoto   A Physical Origin for Functional Domain
                                  Structure in Nucleic Acids as Evidenced
                                  by Cross-linking Entropy: II . . . . . . 387--412
               M. P. Yeates and   
              B. J. Tolkamp and   
             D. J. Allcroft and   
                  I. Kyriazakis   The use of Mixed Distribution Models to
                                  Determine Bout Criteria for Analysis of
                                  Animal Behaviour . . . . . . . . . . . . 413--425
    István Scheuring and   
          Orsolya E. Zeöld   Data Estimation and the Colour of Time
                                  Series . . . . . . . . . . . . . . . . . 427--434
           Svetlana Fishman and   
       Michel Génard and   
      Jean-Gérard Huguet   Theoretical Analysis of Systematic
                                  Errors Introduced by a Pedicel--Girdling
                                  Technique used to Estimate Separately
                                  the Xylem and Phloem Flows . . . . . . . 435--446
                 Dominik Wodarz   Helper-dependent vs. Helper-independent
                                  CTL Responses in HIV Infection:
                                  Implications for Drug Therapy and
                                  Resistance . . . . . . . . . . . . . . . 447--459
              S. N. Beshers and   
                Z. Y. Huang and   
                    Y. Oono and   
                 G. E. Robinson   Social Inhibition and the Regulation of
                                  Temporal Polyethism in Honey Bees  . . . 461--479
        Daniel Segré and   
              Barak Shenhav and   
                  Ron Kafri and   
                   Doron Lancet   The Molecular Roots of Compositional
                                  Inheritance  . . . . . . . . . . . . . . 481--491
              Qian-Zhong Li and   
                    Zhi-Qing Lu   The Prediction of the Structural Class
                                  of Protein: Application of the Measure
                                  of Diversity . . . . . . . . . . . . . . 493--502
                      Anonymous   ERRATUM: The Size Distribution of Human
                                  Hematagenous Metastases  . . . . . . . . 503--503
                      Anonymous   Pages 315--503 (7 December 2001) . . . . ??

Journal of Theoretical Biology
Volume 213, Number 4, December 21, 2001

           S. Micha\l Jazwinski   Integrative Approaches to Aging
                                  Biological Systems . . . . . . . . . . . 505--507
      Leah Edelstein-Keshet and   
               Aliza Israel and   
                 Peter Lansdorp   Modelling Perspectives on Aging: Can
                                  Mathematics Help us Stay Young?  . . . . 509--525
         Leonid A. Gavrilov and   
           Natalia S. Gavrilova   The Reliability Theory of Aging and
                                  Longevity  . . . . . . . . . . . . . . . 527--545
             Peter Olofsson and   
               Otto Schwalb and   
        Ranajit Chakraborty and   
                   Marek Kimmel   An Application of a General Branching
                                  Process in the Study of the Genetics of
                                  Aging  . . . . . . . . . . . . . . . . . 547--557
                    Marc Mangel   Complex Adaptive Systems, Aging and
                                  Longevity  . . . . . . . . . . . . . . . 559--571
             Peter D. Sozou and   
          Thomas B. L. Kirkwood   A Stochastic Model of Cell Replicative
                                  Senescence Based on Telomere Shortening,
                                  Oxidative Stress, and Somatic Mutations
                                  in Nuclear and Mitochondrial DNA . . . . 573--586
                 F. Luciani and   
                S. Valensin and   
               R. Vescovini and   
                 P. Sansoni and   
                 F. Fagnoni and   
              C. Franceschi and   
                M. Bonaf\`e and   
                   G. Turchetti   A Stochastic Model for CD8 + T Cell
                                  Dynamics in Human Immunosenescence:
                                  Implications for Survival and Longevity  587--597
       S. Micha\l Jazwinski and   
               Jaros\law Wawryn   Profiles of Random Change During Aging
                                  Contain Hidden Information about
                                  Longevity and the Aging Process  . . . . 599--608
                      Anonymous   Pages 505--608 (21 December 2001)  . . . ??


Journal of Theoretical Biology
Volume 214, Number 1, January 7, 2002

         Nicholas J. Savill and   
             Richard Weller and   
           Jonathan A. Sherratt   Mathematical Modelling of Nitric Oxide
                                  Regulation of Rete Peg Formation in
                                  Psoriasis  . . . . . . . . . . . . . . . 1--16
                H. El-Samad and   
                 J. P. Goff and   
                    M. Khammash   Calcium Homeostasis and Parturient
                                  Hypocalcemia: An Integral Feedback
                                  Perspective  . . . . . . . . . . . . . . 17--29
            Peter Schofield and   
              Mark Chaplain and   
                Stephen Hubbard   Mathematical Modelling of
                                  Host--Parasitoid Systems: Effects of
                                  Chemically Mediated Parasitoid Foraging
                                  Strategies on Within- and
                                  Between-generation Spatio-temporal
                                  Dynamics . . . . . . . . . . . . . . . . 31--47
           Tomás Revilla   Effects of Intraguild Predation on
                                  Resource Competition . . . . . . . . . . 49--62
             Kenji Matsuura and   
                  Eizi Kuno and   
              Takayoshi Nishida   Homosexual Tandem Running as Selfish
                                  Herd in Reticulitermes speratus: Novel
                                  Antipredatory Behavior in Termites . . . 63--70
              Jan A. Freund and   
      Lutz Schimansky-Geier and   
            Beatrix Beisner and   
           Alexander Neiman and   
           David F. Russell and   
          Tatyana Yakusheva and   
                     Frank Moss   Behavioral Stochastic Resonance: How the
                                  Noise from a Daphnia Swarm Enhances
                                  Individual Prey Capture by Juvenile
                                  Paddlefish . . . . . . . . . . . . . . . 71--83
           Alexander Taghva and   
                  Yunmei Ma and   
              Michael R. Lieber   Analysis of the Kinetic and Equilibrium
                                  Binding of Ku Protein to DNA . . . . . . 85--97
                Andy Purvis and   
           Aris Katzourakis and   
            Paul-Michael Agapow   Evaluating Phylogenetic Tree Shape: Two
                                  Modifications to Fusco and Cronk's
                                  Method . . . . . . . . . . . . . . . . . 99--103
        Catholijn M. Jonker and   
             Jacky L. Snoep and   
                  Jan Treur and   
         Hans V. Westerhoff and   
        Wouter C. A. Wijngaards   Putting Intentions into Cell
                                  Biochemistry: An Artificial Intelligence
                                  Perspective  . . . . . . . . . . . . . . 105--134
                      Anonymous   Pages 1--134 (7 January 2002)  . . . . . ??

Journal of Theoretical Biology
Volume 214, Number 2, January 21, 2002

                  J. Kearns and   
                 L. Farnell and   
               W. G. Gibson and   
                  Y. Q. Lin and   
                  M. R. Bennett   Quantal Current Fields around Individual
                                  Boutons in Sympathetic Ganglia . . . . . 135--146
    Alexandre Sambelashvili and   
                 Igor R. Efimov   The Pinwheel Experiment Re-revisited . . 147--153
      Jeffrey P. Lorberbaum and   
           Daryl E. Bohning and   
             Ananda Shastri and   
                 Lauren E. Sine   Are There Really No Evolutionarily
                                  Stable Strategies in the Iterated
                                  Prisoner's Dilemma?  . . . . . . . . . . 155--169
                    Avinoam Nir   The Fertilization Dance: a Mechanical
                                  View of the Egg Rotation During the
                                  Initial Spermatozoa--Ovum Interaction    171--179
                Shea N. Gardner   Modeling Multi-drug Chemotherapy:
                                  Tailoring Treatment to Individuals . . . 181--207
                 David Wick and   
             Steven G. Self and   
                 Lawrence Corey   Do Scarce Targets or T Killers Control
                                  Primary HIV Infection? . . . . . . . . . 209--214
        Nikolai A. Provorov and   
           Alex Yu. Borisov and   
            Igor A. Tikhonovich   Developmental Genetics and Evolution of
                                  Symbiotic Structures in Nitrogen-fixing
                                  Nodules and Arbuscular Mycorrhiza  . . . 215--232
       S. A. L. M. Kooijman and   
             H. A. Dijkstra and   
                     B. W. Kooi   Light-induced Mass Turnover in a
                                  Mono-species Community of Mixotrophs . . 233--254
           Jan Sielewiesiuk and   
             Elzbieta Malarczyk   A Cycle of Enzymatic Reactions that
                                  Behaves like a Neuronal Circuit  . . . . 255--262
          Yuri G. Anissimov and   
         Anthony J. Bracken and   
             Michael S. Roberts   Catheter Effects in Organ Perfusion
                                  Experiments  . . . . . . . . . . . . . . 263--273
                    Bo Cartling   Control of Neural Information
                                  Transmission by Synaptic Dynamics  . . . 275--292
              Giorgio Recordati   The Visceral Nervous System and its
                                  Environments . . . . . . . . . . . . . . 293--304
             Marta Ginovart and   
        Daniel López and   
                  Joaquim Valls   INDISIM, An Individual-based Discrete
                                  Simulation Model to Study Bacterial
                                  Cultures . . . . . . . . . . . . . . . . 305--319
              Juana Cabanes and   
           Soledad Chazarra and   
Francisco García-Carmona   Tyrosinase Kinetics: a Semi-quantitative
                                  Model of the Mechanism of Oxidation of
                                  Monohydric and Dihydric Phenolic
                                  Substrates --- Reply . . . . . . . . . . 321--325
               Patrick A. Riley   Response to Letter from Cabanes et al.   327--328
                      Anonymous   Pages 135--328 (21 January 2002) . . . . ??

Journal of Theoretical Biology
Volume 214, Number 3, February 7, 2002

               Patsy Haccou and   
                Olivier Glaizot   The ESS in an Asymmetric Generalized War
                                  of Attrition with Mistakes in Role
                                  Perception . . . . . . . . . . . . . . . 329--349
               G. K. Taylor and   
                A. L. R. Thomas   Animal Flight Dynamics II. Longitudinal
                                  Stability in Flapping Flight . . . . . . 351--370
            Yoshinobu Inada and   
                  Keiji Kawachi   Order and Flexibility in the Motion of
                                  Fish Schools . . . . . . . . . . . . . . 371--387
              Stefano Ghirlanda   Intensity Generalization: Physiology and
                                  Modelling of a Neglected Topic . . . . . 389--404
            Jose M. Montoya and   
          Ricard V. Solé   Small World Patterns in Food Webs  . . . 405--412
           Jonathan C. K. Wells   Thermal Environment and Human Birth
                                  Weight . . . . . . . . . . . . . . . . . 413--425
Jean-Christophe Doré and   
                Tiiu Ojasoo and   
                 Michel Thireau   Using the Volumetric Indices of
                                  Telencephalic Structures to Distinguish
                                  \bionameSalamandridae and
                                  \bionamePlethodontidae: Comparison of
                                  Three Statistical Methods  . . . . . . . 427--439
                  F. Saffre and   
               J. L. Deneubourg   Swarming Strategies for Cooperative
                                  Species  . . . . . . . . . . . . . . . . 441--451
          Joshua B. Plotkin and   
                Martin A. Nowak   The Different Effects of Apoptosis and
                                  DNA Repair on Tumorigenesis  . . . . . . 453--467
                  J. Halloy and   
              B. A. Bernard and   
              G. Loussouarn and   
                   A. Goldbeter   The Follicular Automaton Model: Effect
                                  of Stochasticity and of Synchronization
                                  of Hair Cycles . . . . . . . . . . . . . 469--479
               F. A. Daudet and   
                A. Lacointe and   
         J. P. Gaudill\`ere and   
                    P. Cruiziat   Generalized Münch Coupling between Sugar
                                  and Water Fluxes for Modelling Carbon
                                  Allocation as Affected by Water Status   481--498
             Stuart A. West and   
             J. Paul Cunningham   A General Model for Host Plant Selection
                                  in Phytophagous Insects  . . . . . . . . 499--513
                   Joaquim Fort   A Comment on Amplification and Spread of
                                  Viruses in a Growing Plaque  . . . . . . 515--518
                      Anonymous   Pages 329--518 (7 February 2002) . . . . ??

Journal of Theoretical Biology
Volume 214, Number 4, February 21, 2002

                    Bo-Ping Han   A Mechanistic Model of Algal
                                  Photoinhibition Induced by Photodamage
                                  to Photosystem --- II  . . . . . . . . . 519--527
      Ramon González and   
         Barbara A. Andrews and   
                 Juan A. Asenjo   Kinetic Model of BiP- and PDI-mediated
                                  Protein Folding and Assembly . . . . . . 529--537
                  Ulrich Hopfer   A Maxwell's Demon Type of Membrane
                                  Transport: Possibility for Active
                                  Transport by ABC-Type Transporters?  . . 539--547
               Hiroto Shoji and   
                  Yoh Iwasa and   
           Atushi Mochizuki and   
                  Shigeru Kondo   Directionality of Stripes Formed by
                                  Anisotropic Reaction--Diffusion Models   549--561
            Kunihiko Kaneko and   
                   Tetsuya Yomo   On a Kinetic Origin of Heredity:
                                  Minority Control in a Replicating System
                                  with Mutually Catalytic Molecules  . . . 563--576
               Didier Gonze and   
            Marc R. Roussel and   
               Albert Goldbeter   A Model for the Enhancement of Fitness
                                  in Cyanobacteria Based on Resonance of a
                                  Circadian Oscillator with the External
                                  Light--Dark Cycle  . . . . . . . . . . . 577--597
                James P. Grover   Stoichiometry, Herbivory and Competition
                                  for Nutrients: Simple Models based on
                                  Planktonic Ecosystems  . . . . . . . . . 599--618
               Ralf Möller   Insects Could Exploit UV-Green Contrast
                                  for Landmark Navigation  . . . . . . . . 619--631
          H. Korthals Altes and   
                  D. Wodarz and   
                V. A. A. Jansen   The Dual Role of CD4 T Helper Cells in
                                  the Infection Dynamics of HIV and Their
                                  Importance for Vaccination . . . . . . . 633--646
          Renato Casagrandi and   
                 Sergio Rinaldi   On the Aperiodic Locomotor Behavior of
                                  Halobacterium salinarium Under Periodic
                                  Light Stimuli  . . . . . . . . . . . . . 647--656
        Gonzalo G. De Polavieja   Errors Drive the Evolution of Biological
                                  Signalling to Costly Codes . . . . . . . 657--664
                      Anonymous   Pages 519--664 (21 February 2002)  . . . ??


Journal of Theoretical Biology
Volume 215, Number 1, March 7, 2002

    J. López-Fidalgo and   
                  Weng Kee Wong   Design Issues for the Michaelis--Menten
                                  Model  . . . . . . . . . . . . . . . . . 1--11
           Naofumi Nakayama and   
            Syunsuke Tanaka and   
                  Osamu Kikuchi   Ab Initio GB Study of Methylation
                                  Reaction of Adenine, Cytosine, Guanine,
                                  and Thymine by Methanediazonium Ion  . . 13--22
        T. Hölttä and   
                  T. Vesala and   
      M. Perämäki and   
                    E. Nikinmaa   Relationships between Embolism, Stem
                                  Water Tension, and Diameter Changes  . . 23--38
               M. S. Fowler and   
                   G. D. Ruxton   Population Dynamic Consequences of Allee
                                  Effects  . . . . . . . . . . . . . . . . 39--46
         Thomas N. Sherratt and   
                Gilbert Roberts   The Stability of Cooperation Involving
                                  Variable Investment  . . . . . . . . . . 47--56
                    J. Cubo and   
                  D. Azagra and   
                 A. Casinos and   
                    J. Castanet   Heterochronic Detection Through a
                                  Function for the Ontogenetic Variation
                                  of Bone Shape  . . . . . . . . . . . . . 57--66
             Jason A. Papin and   
            Nathan D. Price and   
          Jeremy S. Edwards and   
     Bernhard ò. Palsson   The Genome-Scale Metabolic Extreme
                                  Pathway Structure in Haemophilus
                                  influenzae Shows Significant Network
                                  Redundancy . . . . . . . . . . . . . . . 67--82
Carlos M. Hernández-Suárez   A Markov Chain Approach to Calculate $
                                  R_0 $ in Stochastic Epidemic Models  . . 83--93
            Otso Ovaskainen and   
              Kazunori Sato and   
            Jordi Bascompte and   
                   Ilkka Hanski   Metapopulation Models for Extinction
                                  Threshold in Spatially Correlated
                                  Landscapes . . . . . . . . . . . . . . . 95--108
                 Lars Philipson   Functional Modules of the Brain  . . . . 109--119
                Peter Schofield   Spatially Explicit Models of
                                  Turelli--Hoffmann \bionameWolbachia
                                  Invasive Wave Fronts . . . . . . . . . . 121--131
                      Anonymous   Pages 1--131 (7 March 2002)  . . . . . . ??

Journal of Theoretical Biology
Volume 215, Number 2, March 21, 2002

         Michael J. O'Brien and   
               R. Lee Lyman and   
               Youssef Saab and   
                 Elias Saab and   
               John Darwent and   
               Daniel S. Glover   Two Issues in Archaeological
                                  Phylogenetics: Taxon Construction and
                                  Outgroup Selection . . . . . . . . . . . 133--150
         Christopher Sewell and   
          Jeffrey J. Morgan and   
                Paul A. Lindahl   Analysis of Protein Homeostatic
                                  Regulatory Mechanisms in Perturbed
                                  Environments at Steady State . . . . . . 151--167
          L. A. Bruins Slot and   
              P. J. Pauwels and   
                 F. C. Colpaert   Sign-reversal during Persistent
                                  Activation in $ \mu $-Opioid Signal
                                  Transduction . . . . . . . . . . . . . . 169--182
           Kyle W. Shertzer and   
              Stephen P. Ellner   Energy Storage and the Evolution of
                                  Population Dynamics  . . . . . . . . . . 183--200
J. López-Sánchez and   
                A. Murciano and   
     R. Lahoz-Beltrá and   
                  J. Zamora and   
N. I. Giménez-Abián and   
J. F. López-Sáez and   
             C. De La Torre and   
           J. L. Cánovas   Modelling Complex Populations Formed by
                                  Proliferating, Quiescent and
                                  Quasi-quiescent Cells: Application to
                                  Plant Root Meristems . . . . . . . . . . 201--213
         Vivek Ramakrishnan and   
                David D. Busath   An Inverting Basket Model for AE1
                                  Transport  . . . . . . . . . . . . . . . 215--226
           Juan P. Aparicio and   
           Angel F. Capurro and   
         Carlos Castillo-Chavez   Markers of Disease Evolution: The Case
                                  of Tuberculosis  . . . . . . . . . . . . 227--237
            Pedro De Atauri and   
              David A. Fell and   
     Christophe Chassagnole and   
              Dolors Magret and   
          Jean Pierre Mazat and   
                 Marta Cascante   Dependence of Control Coefficient
                                  Distribution on the Boundaries of a
                                  Metabolic System: a Generalized Analysis
                                  of the Effects of Additional Input and
                                  Output reactions to a Linear Pathway . . 239--251
               Yuu Nakayama and   
                Hiromi Seno and   
               Hiroyuki Matsuda   A Population Dynamic Model for
                                  Facultative Agamosperms  . . . . . . . . 253--262
                      Anonymous   Pages 133--262 (21 March 2002) . . . . . ??

Journal of Theoretical Biology
Volume 215, Number 3, April 7, 2002

             Christian H. Reick   Two Notions of Conspicuity and the
                                  Classification of Phyllotaxis  . . . . . 263--271
             O. V. Aslanidi and   
               O. A. Mornev and   
              M. Vesterager and   
      M. P. Sòrensen and   
             P. L. Christiansen   A Model for Glucose-induced Wave
                                  Propagation in Pancreatic Islets of
                                  Langerhans . . . . . . . . . . . . . . . 273--286
                Robert Boyd and   
             Peter J. Richerson   Group Beneficial Norms Can Spread
                                  Rapidly in a Structured Population . . . 287--296
                 Francis Maurin   A Mathematical Model of Chemoreception
                                  for Odours and Taste . . . . . . . . . . 297--303
        Jonathan G. Hillier and   
           A. Nicholas E. Birch   Bi-trophic Mathematical Model for Pest
                                  Adaptation to a Resistant Crop . . . . . 305--319
I. Dostáiková and   
                  M. Spinka and   
                   P. Kindlmann   Begging for Milk: Evolution of Teat
                                  Massaging in Suckling Pigs . . . . . . . 321--332
          J. Chattopadhayay and   
               R. R. Sarkar and   
                      S. Mandal   Toxin-producing Plankton May Act as a
                                  Biological Control for Planktonic Blooms
                                  --- Field Study and Mathematical
                                  Modelling  . . . . . . . . . . . . . . . 333--344
              Atsushi Mochizuki   Pattern Formation of the Cone Mosaic in
                                  the Zebrafish Retina: a Cell
                                  Rearrangement Model  . . . . . . . . . . 345--361
           Jacques Gautrais and   
              Guy Theraulaz and   
      Jean-Louis Deneubourg and   
                  Carl Anderson   Emergent Polyethism as a Consequence of
                                  Increased Colony Size in Insect
                                  Societies  . . . . . . . . . . . . . . . 363--373
             Clemens Wagner and   
            Jörg W. Stucki   Construction of an Associative Memory
                                  using Unstable Periodic Orbits of a
                                  Chaotic Attractor  . . . . . . . . . . . 375--384
                      Anonymous   Pages 263--384 (7 April 2002)  . . . . . ??

Journal of Theoretical Biology
Volume 215, Number 4, April 21, 2002

          Jonathan Yearsley and   
            Ian M. Hastings and   
             Iain J. Gordon and   
           Ilias Kyriazakis and   
               Andrew W. Illius   A Lifetime Perspective on Foraging and
                                  Mortality  . . . . . . . . . . . . . . . 385--397
                    Silke Thoms   Hydrogen Bonds and the Catalytic
                                  Mechanism of Human Carbonic Anhydrase II 399--404
                    Uwe Schlink   On the Probability Model for Asthma
                                  Attacks  . . . . . . . . . . . . . . . . 405--414
             Lemont B. Kier and   
             Chao-Kun Cheng and   
                  Bernard Testa   A Cellular Automata Model of Ligand
                                  Passage Over a Protein Hydrodynamic
                                  Landscape  . . . . . . . . . . . . . . . 415--426
                Dhruba Naug and   
                 Scott Camazine   The Role of Colony Organization on
                                  Pathogen Transmission in Social Insects  427--439
       Ferenc Jordán and   
    István Scheuring and   
              Gábor Vida   Species Positions and Extinction
                                  Dynamics in Simple Food Webs . . . . . . 441--448
        Leiv òyehaug and   
                Erik Plahte and   
          Dag I. Våge and   
                 Stig W. Omholt   The Regulatory Basis of Melanogenic
                                  Switching  . . . . . . . . . . . . . . . 449--468
       Javier G. P. Gamarra and   
          Ricard V. Solé   Biomass-Diversity Responses and Spatial
                                  Dependencies in Disturbed Tallgrass
                                  Prairies . . . . . . . . . . . . . . . . 469--480
              Guy Theraulaz and   
              Eric Bonabeau and   
      Ricard V. Solé and   
            Bertrand Schatz and   
          Jean-Louis Deneubourg   Task Partitioning in a Ponerine Ant  . . 481--489
                  R. A. Alberty   Thermodynamics of Systems of Biochemical
                                  Reactions  . . . . . . . . . . . . . . . 491--501
                      Anonymous   Pages 385--501 (21 April 2002) . . . . . ??


Journal of Theoretical Biology
Volume 216, Number 1, May 7, 2002

        Avinoam Rabinovitch and   
              Itzhak Fishov and   
                Hilla Hadas and   
               Monica Einav and   
                 Arieh Zaritsky   Bacteriophage T4 Development in
                                  \bionameEscherichia coli is Growth Rate
                                  Dependent  . . . . . . . . . . . . . . . 1--4
             J. David Logan and   
              Anthony Joern and   
             William Wolesensky   Location, Time, and Temperature
                                  Dependence of Digestion in Simple Animal
                                  Tracts . . . . . . . . . . . . . . . . . 5--18
            Mineo Morohashi and   
             Amanda E. Winn and   
            Mark T. Borisuk and   
              Hamid Bolouri and   
                 John Doyle and   
                 Hiroaki Kitano   Robustness as a Measure of Plausibility
                                  in Models of Biochemical Networks  . . . 19--30
        Christian W. Eurich and   
          Michael C. Mackey and   
               Helmut Schwegler   Recurrent Inhibitory Dynamics: The Role
                                  of State-Dependent Distributions of
                                  Conduction Delay Times . . . . . . . . . 31--50
             Lev A. Zhivotovsky   A Model of the Early Evolution of
                                  Soma-to-Germline Feedback  . . . . . . . 51--57
                   Ivan V. Maly   A Stochastic Model for Patterning of the
                                  Cytoplasm by the Saltatory Movement  . . 59--71
            Kim Christensen and   
    Simone A. Di Collobiano and   
                  Matt Hall and   
               Henrik J. Jensen   Tangled Nature: a Model of Evolutionary
                                  Ecology  . . . . . . . . . . . . . . . . 73--84
             Stephen Turner and   
           Jonathan A. Sherratt   Intercellular Adhesion and Cancer
                                  Invasion: a Discrete Simulation Using
                                  the Extended Potts Model . . . . . . . . 85--100
              Jachen Denoth and   
          Edgar Stüssi and   
                Gabor Csucs and   
                Gaudenz Danuser   Single Muscle Fiber Contraction is
                                  Dictated by Inter-Sarcomere Dynamics . . 101--122
                      Anonymous   Pages 1--122 (7 May 2002)  . . . . . . . ??

Journal of Theoretical Biology
Volume 216, Number 2, May 21, 2002

               Kyoko Ohsawa and   
          Kohkichi Kawasaki and   
                Fugo Takasu and   
               Nanako Shigesada   Recurrent Habitat Disturbance and
                                  Species Diversity in a
                                  Multiple-Competitive Species System  . . 123--138
             B. David Silverman   A Two-Component Nucleation Model of
                                  Protein Hydrophobicity . . . . . . . . . 139--146
                 Eric M. Kramer   A Mathematical Model of Pattern
                                  Formation in the Vascular Cambium of
                                  Trees  . . . . . . . . . . . . . . . . . 147--158
        Ekaterina A. Ilyina and   
                Yuri B. Vakhtin   Molecular Model for Limb Development . . 159--177
       Athel Cornish-Bowden and   
         Jan-Hendrik S. Hofmeyr   The Role of Stoichiometric Analysis in
                                  Studies of Metabolism: An Example  . . . 179--191
               Gen Kurosawa and   
          Atsushi Mochizuki and   
                      Yoh Iwasa   Comparative Study of Circadian Clock
                                  Models, in Search of Processes Promoting
                                  Oscillation  . . . . . . . . . . . . . . 193--208
             Gro Vang Amdam and   
                 Stig W. Omholt   The Regulatory Anatomy of Honeybee
                                  Lifespan . . . . . . . . . . . . . . . . 209--228
            Olivier Cinquin and   
              Jacques Demongeot   Positive and Negative Feedback: Striking
                                  a Balance Between Necessary Antagonists  229--241
        Frederick H. Silver and   
             Istvan Horvath and   
                 David J. Foran   Mechanical Implications of the Domain
                                  Structure of Fiber-Forming Collagens:
                                  Comparison of the Molecular and
                                  Fibrillar Flexibilities of the $ \alpha
                                  $1-Chains Found in Types I--III Collagen 243--254
                      Anonymous   Metabolic Engineering IV: Applied System
                                  Biology October 6--11, 2002 Il Ciocco,
                                  Castelvecchio Pascoli (Tuscany), Italy   255--255
                      Anonymous   Pages 123--255 (21 May 2002) . . . . . . ??

Journal of Theoretical Biology
Volume 216, Number 3, June 7, 2002

             S. V. Koroleva and   
                 I. P. Ashmarin   Functional Continuum of Regulatory
                                  Peptides (RPs): Vector Model of
                                  RP-Effects Representation  . . . . . . . 257--271
          Michael Meyer-Hermann   A Mathematical Model for the Germinal
                                  Center Morphology and Affinity
                                  Maturation . . . . . . . . . . . . . . . 273--300
      Leah Edelstein-Keshet and   
                   Athan Spiros   Exploring the Formation of Alzheimer's
                                  Disease Senile Plaques in Silico . . . . 301--326
             Shai Rosenwald and   
                  Ran Kafri and   
                   Doron Lancet   Test of a Statistical Model for
                                  Molecular Recognition in Biological
                                  Repertoires  . . . . . . . . . . . . . . 327--336
          Larry M. Manevitz and   
                   Shimon Marom   Modeling the Process of Rate Selection
                                  in Neuronal Activity . . . . . . . . . . 337--343
      Robert Root-Bernstein and   
             Julia V. Busik and   
               Douglas N. Henry   Are Diabetic Neuropathy, Retinopathy and
                                  Nephropathy Caused by Hyperglycemic
                                  Exclusion of Dehydroascorbate Uptake by
                                  Glucose Transporters?  . . . . . . . . . 345--359
                  Kuang Lin and   
             Alex C. W. May and   
              William R. Taylor   Amino Acid Encoding Schemes from Protein
                                  Structure Alignments: Multi-dimensional
                                  Vectors to Describe Residue Types  . . . 361--365
                       L. Turin   A Method for the Calculation of Odor
                                  Character from Molecular Structure . . . 367--385
                      Anonymous   Pages 257--385 (7 June 2002) . . . . . . ??

Journal of Theoretical Biology
Volume 216, Number 4, June 21, 2002

               Wolfgang Sterrer   On the Origin of Sex as Vaccination  . . 387--396
            Kohei Yoshiyama and   
                 Hisao Nakajima   Catastrophic Transition in Vertical
                                  Distributions of Phytoplankton:
                                  Alternative Equilibria in a Water Column 397--408
                  M. Muller and   
              J. H. G. Verhagen   Optimization of the Mechanical
                                  Performance of a Two-duct Semicircular
                                  Duct System --- Part 1: Dynamics and
                                  Duct Dimensions  . . . . . . . . . . . . 409--424
                  M. Muller and   
              J. H. G. Verhagen   Optimization of the Mechanical
                                  Performance of a Two-duct Semicircular
                                  Duct System --- Part 2: Excitation of
                                  Endolymph Movements  . . . . . . . . . . 425--442
                  M. Muller and   
              J. H. G. Verhagen   Optimization of the Mechanical
                                  Performance of a Two-duct Semicircular
                                  Duct System --- Part 3: The Positioning
                                  of the Ducts in the Head . . . . . . . . 443--459
        Susanna C. Manrubia and   
       Damián H. Zanette   At the Boundary between Biological and
                                  Cultural Evolution: The Origin of
                                  Surname Distributions  . . . . . . . . . 461--477
            Maithili Sharan and   
            Aleksander S. Popel   A Compartmental Model for Oxygen
                                  Transport in Brain Microcirculation in
                                  the Presence of Blood Substitutes  . . . 479--500
             Hiroki R. Ueda and   
               Kenzo Hirose and   
                 Masamitsu Iino   Intercellular Coupling Mechanism for
                                  Synchronized and Noise-Resistant
                                  Circadian Oscillators  . . . . . . . . . 501--512
                      Anonymous   Pages 387--512 (21 June 2002)  . . . . . ??


Journal of Theoretical Biology
Volume 217, Number 1, July 7, 2002

      Hideyuki Câteau and   
                 Shigeru Tanaka   Kinetic Analysis of Multisite
                                  Phosphorylation Using Analytic Solutions
                                  to Michaelis--Menten Equations . . . . . 1--14
              Niels P. R. Anten   Evolutionarily Stable Leaf Area
                                  Production in Plant Populations  . . . . 15--32
         Radoslav K. Andjus and   
             Zeljko Dzakula and   
        Marina Marjanovi\'c and   
       Dragoslava Zivadinovi\'c   Kinetic Properties of the
                                  Enzyme-Substrate System: a Basis for
                                  Immediate Temperature Compensation . . . 33--46
                 Karl J. Niklas   On the Allometry of Biomass Partitioning
                                  and Light Harvesting for Plants with
                                  Leafless Stems . . . . . . . . . . . . . 47--52
                     Toni Pujol   The Consequence of Maximum Thermodynamic
                                  Efficiency in Daisyworld . . . . . . . . 53--60
           Hirotami T. Imai and   
                 Yoko Satta and   
              Masayasu Wada and   
               Naoyuki Takahata   Estimation of the Highest Chromosome
                                  Number of Eukaryotes Based on the
                                  Minimum Interaction Theory . . . . . . . 61--74
                    Alan Grafen   A First Formal Link between the Price
                                  Equation and an Optimization Program . . 75--91
              J. T. Manning and   
                  S. Martin and   
              R. L. Trivers and   
                       M. Soler   2nd to 4th Digit Ratio and Offspring Sex
                                  Ratio  . . . . . . . . . . . . . . . . . 93--95
        Julyan H. E. Cartwright   Labyrinthine Turing Pattern Formation in
                                  the Cerebral Cortex  . . . . . . . . . . 97--103
Véronique Larreta-Garde and   
                   Hugues Berry   Modeling Extracellular Matrix
                                  Degradation Balance with
                                  Proteinase/Transglutaminase Cycle  . . . 105--124
            William J. Reed and   
                Barry D. Hughes   On the Size Distribution of Live Genera  125--135
                      Anonymous   Pages 1--135 (7 July 2002) . . . . . . . ??

Journal of Theoretical Biology
Volume 217, Number 2, July 21, 2002

           Mike B. Gravenor and   
              Alun L. Lloyd and   
          Peter G. Kremsner and   
         Michel A. Missinou and   
               Mike English and   
                Kevin Marsh and   
            Dominic Kwiatkowski   A Model for Estimating Total Parasite
                                  Load in Falciparum Malaria Patients  . . 137--148
                 K. Walters and   
                P. G. Blackwell   Group Formation Games with Reappraisal   149--157
                Nozomu Furuichi   Dynamics between a Predator and a Prey
                                  Switching Two Kinds of Escape Motions    159--166
            Elias Zintzaras and   
               Mauro Santos and   
     Eörs Szathmáry   ``Living'' Under the Challenge of
                                  Information Decay: The Stochastic
                                  Corrector Model vs. Hypercycles  . . . . 167--181
          Steven V. Viscido and   
             Matthew Miller and   
                David S. Wethey   The Dilemma of the Selfish Herd: The
                                  Search for a Realistic Movement Rule . . 183--194
              S. M. Leisner and   
                    D. A. Neher   Third Position Codon Composition
                                  Suggests Two Classes of Genes Within the
                                  Cauliflower Mosaic Virus Genome  . . . . 195--201
                Wayne S. Kendal   A Frequency Distribution for the Number
                                  of Hematogenous Organ Metastases . . . . 203--218
        Jean-Baptiste Ferdy and   
    Laurence Després and   
                Bernard Godelle   Evolution of Mutualism Between
                                  Globeflowers and their Pollinating Flies 219--234
             David S. Stevenson   Co-Evolution of the Genetic Code and
                                  Ribozyme Replication . . . . . . . . . . 235--253
      Ana B. Sendova-Franks and   
                   Jan Van Lent   Random Walk Models of Worker Sorting in
                                  Ant Colonies . . . . . . . . . . . . . . 255--274
                      Anonymous   Pages 137--274 (21 July 2002)  . . . . . ??

Journal of Theoretical Biology
Volume 217, Number 3, August 7, 2002

           Claudia Carrillo and   
              Michael Mogie and   
            Nicholas F. Britton   Coexistence of Sexual and Asexual
                                  Conspecifics: a Cellular Automaton Model 275--285
          C. Fåhraeus and   
                S. Theander and   
                   A. Edman and   
                      W. Grampp   The K--Cl Cotransporter in the Lobster
                                  Stretch Receptor Neurone --- A Kinetic
                                  Analysis . . . . . . . . . . . . . . . . 287--309
              M. D. Hanigan and   
             L. A. Crompton and   
             B. J. Bequette and   
             J. A. N. Mills and   
                      J. France   Modelling Mammary Metabolism in the
                                  Dairy Cow to Predict Milk Constituent
                                  Yield, with Emphasis on Amino Acid
                                  Metabolism and Milk Protein Production:
                                  Model Evaluation . . . . . . . . . . . . 311--330
              Ben O. Brilot and   
             Rufus A. Johnstone   Cost, Competition and Information in
                                  Communication between Relatives  . . . . 331--340
                 Sami Aikio and   
                  Esa Ranta and   
              Veijo Kaitala and   
                   Per Lundberg   Seed Bank in Annuals: Competition
                                  Between Banker and Non-banker Morphs . . 341--349
 Sébastien Gourbiere and   
     Ffrançois Gourbiere   Competition between Unit-restricted
                                  Fungi: a Metapopulation Model  . . . . . 351--368
           Nicolas Loeuille and   
             Michel Loreaul and   
       Réegis Ferri\`ere   Consequences of Plant--Herbivore
                                  Coevolution on the Dynamics and
                                  Functioning of Ecosystems  . . . . . . . 369--381
           M.-Th. Hütt and   
                 U. Rascher and   
                    F. Beck and   
                 U. Lüttge   Period-2 Cycles and 2:1 Phase Locking in
                                  a Biological Clock Driven by Temperature
                                  Pulses . . . . . . . . . . . . . . . . . 383--390
                  Esa Ranta and   
                David Tesar and   
                  Veijo Kaitala   Environmental Variability and
                                  Semelparity vs. Iteroparity as Life
                                  Histories  . . . . . . . . . . . . . . . 391--396
                Lloyd Demetrius   Thermodynamics and Kinetics of Protein
                                  Folding: An Evolutionary Perspective . . 397--411
                      Anonymous   Pages 275--411 (7 August 2002) . . . . . ??

Journal of Theoretical Biology
Volume 217, Number 4, August 21, 2002

        Jean-Baptiste Ferdy and   
                  Jane Molofsky   Allee Effect, Spatial Structure and
                                  Species Coexistence  . . . . . . . . . . 413--424
                  Hiroaki Daido   Population Dynamics of Clock-Controlled
                                  Biological Species: Models and Why
                                  Circadian Rhythms are Circadian  . . . . 425--442
           Roland R. Regoes and   
           Sebastian Bonhoeffer   HIV Coreceptor Usage and Drug Treatment  443--457
          Graeme P. Boswell and   
               Helen Jacobs and   
        Fordyce A. Davidson and   
           Geoffrey M. Gadd and   
                      Karl Ritz   Functional Consequences of Nutrient
                                  Translocation in Mycelial Fungi  . . . . 459--477
      Christoforos Nikolaou and   
              Yannis Almirantis   A Study of the Middle-scale Nucleotide
                                  Clustering in DNA Sequences of Various
                                  Origin and Functionality, by means of a
                                  Method based on a Modified Standard
                                  Deviation  . . . . . . . . . . . . . . . 479--492
Juan A. Martínez Giménez and   
Rafael Tabarés Seisdedos   On the Dimerization of the Primitive
                                  tRNAs: Implications in the Origin of
                                  Genetic Code . . . . . . . . . . . . . . 493--498
   Vladimír Kovác   Synchrony and Heterochrony in Ontogeny
                                  (of Fish)  . . . . . . . . . . . . . . . 499--507
                M. E. Jones and   
                M. N. Berry and   
                 J. W. Phillips   Futile Cycles Revisited: a Markov Chain
                                  Model of Simultaneous Glycolysis and
                                  Gluconeogenesis  . . . . . . . . . . . . 509--523
                     Yi Tao and   
                  Sabin Lessard   Frequency-dependent Selection in Sexual
                                  Family-structured Populations  . . . . . 525--534
            Graeme E. Pound and   
       C. Patrick Doncaster and   
                   Simon J. Cox   A Lotka--Volterra Model of Coexistence
                                  between a Sexual Population and Multiple
                                  Asexual Clones . . . . . . . . . . . . . 535--545
                      Anonymous   Pages 413--545 (21 August 2002)  . . . . ??


Journal of Theoretical Biology
Volume 218, Number 1, September 7, 2002

             Iain D. Couzin and   
                Jens Krause and   
              Richard James and   
           Graeme D. Ruxton and   
                Nigel R. Franks   Collective Memory and Spatial Sorting in
                                  Animal Groups  . . . . . . . . . . . . . 1--11
              L. J. Willett and   
                  S. K. Loyalka   Sticking Coefficient-Orchestrated
                                  Selection in a Kinetic Model for the
                                  First Origin . . . . . . . . . . . . . . 13--33
                    Mark Staley   Darwinian Selection Leads to Gaia  . . . 35--46
                  W. Ian Reilly   Magnetic Position Determination by
                                  Homing Pigeons?  . . . . . . . . . . . . 47--54
               Paul Waltman and   
            James Braselton and   
             Lorraine Braselton   A Mathematical Model of a Biological
                                  Arms Race with a Dangerous Prey  . . . . 55--70
          Robert Root-Bernstein   Molecular Complementarity III. Peptide
                                  Complementarity as a Basis for Peptide
                                  Receptor Evolution: a Bioinformatic Case
                                  Study of Insulin, Glucagon and Gastrin   71--84
               M. C. Strain and   
              D. D. Richman and   
                 J. K. Wong and   
                      H. Levine   Spatiotemporal Dynamics of HIV
                                  Propagation  . . . . . . . . . . . . . . 85--96
          David C. Krakauer and   
           Vincent A. A. Jansen   Red Queen Dynamics of Protein
                                  Translation  . . . . . . . . . . . . . . 97--109
                Deborah R. Hart   Intraguild Predation, Invertebrate
                                  Predators, and Trophic Cascades in Lake
                                  Food Webs  . . . . . . . . . . . . . . . 111--128
             Richard A. Lazenby   Skeletal Biology, Functional Asymmetry
                                  and the Origins of ``Handedness''  . . . 129--138
                      Anonymous   Pages 1--138 (7 September 2002)  . . . . ??

Journal of Theoretical Biology
Volume 218, Number 2, September 21, 2002

              R. P. Bywater and   
         A. Sòrensen and   
            P. Rògen and   
                   P. G. Hjorth   Construction of the Simplest Model to
                                  Explain Complex Receptor Activation
                                  Kinetics . . . . . . . . . . . . . . . . 139--147
            Mats Björklund   Optimal Mate Choice in a Neural Network  149--154
     Patrick Cañadas and   
         Valerie M. Laurent and   
            Christian Oddou and   
              Daniel Isabey and   
                Sylvie Wendling   A Cellular Tensegrity Model to Analyse
                                  the Structural Viscoelasticity of the
                                  Cytoskeleton . . . . . . . . . . . . . . 155--173
           Emmanuel Paradis and   
                  Julien Claude   Analysis of Comparative Data Using
                                  Generalized Estimating Equations . . . . 175--185
           Christoph Hauert and   
            Silvia De Monte and   
             Josef Hofbauer and   
                   Karl Sigmund   Replicator Dynamics for Optional Public
                                  Good Games . . . . . . . . . . . . . . . 187--194
             Shiro Horiuchi and   
             Norio Yamamura and   
                     Takuya Abe   Soldier Production Strategy in Lower
                                  Termites: From Young Instars or Old
                                  Instars? . . . . . . . . . . . . . . . . 195--205
                Robert B. Raffa   Harmonic Mean Relationship between
                                  Affinity for wild-type Receptors and
                                  Alanine-scan mutants . . . . . . . . . . 207--214
             M. A. Changizi and   
            M. A. Mcdannald and   
                     D. Widders   Scaling of Differentiation in Networks:
                                  Nervous Systems, Organisms, Ant
                                  Colonies, Ecosystems, Businesses,
                                  Universities, Cities, Electronic
                                  Circuits, and Legos  . . . . . . . . . . 215--237
               Armin Kargol and   
                Bryan Smith and   
               Mark M. Millonas   Applications of Nonequilibrium Response
                                  Spectroscopy to the Study of Channel
                                  Gating. Experimental Design and
                                  Optimization . . . . . . . . . . . . . . 239--258
               Tian Hong Xu and   
                   Ke Jing Deng   Sex and Retrotransposons: a New Approach
                                  to the Problem . . . . . . . . . . . . . 259--260
                      Anonymous   Pages 139--260 (21 September 2002) . . . ??

Journal of Theoretical Biology
Volume 218, Number 3, October 7, 2002

           Christoph Hauert and   
                   Olaf Stenull   Simple Adaptive Strategy Wins the
                                  Prisoner's Dilemma . . . . . . . . . . . 261--272
          Abdul-Aziz Yakubu and   
         Carlos Castillo-Chavez   Interplay between Local Dynamics and
                                  Dispersal in Discrete-time
                                  Metapopulation Models  . . . . . . . . . 273--288
       Michael A. Gilchrist and   
                   Akira Sasaki   Modeling Host--Parasite Coevolution: a
                                  Nested Approach Based on Mechanistic
                                  Models . . . . . . . . . . . . . . . . . 289--308
              R. Srivastava and   
                     L. You and   
                 J. Summers and   
                         J. Yin   Stochastic vs. Deterministic Modeling of
                                  Intracellular Viral Kinetics . . . . . . 309--321
Iva Dostálková and   
            Pavel Kindlmann and   
            Anthony F. G. Dixon   Are Classical Predator--Prey Models
                                  Relevant to the Real World?  . . . . . . 323--330
                 L. Raeymaekers   Dynamics of Boolean Networks Controlled
                                  by Biologically Meaningful Functions . . 331--341
         Oscar J. G. Somsen and   
             Marco Siderius and   
           Florian F. Bauer and   
             Jacky L. Snoep and   
             Hans V. Westerhoff   Selectivity in Overlapping MAP Kinase
                                  Cascades . . . . . . . . . . . . . . . . 343--354
            R. Varón and   
F. García-Cánovas and   
    M. García-Moreno and   
                  E. Valero and   
   M. Molina-Alarcón and   
M. J. García-Meseguer and   
       J. A. Vidal De Labra and   
            C. Garrido-Del Solo   Kinetic Analysis of the General Modifier
                                  Mechanism of Botts and Morales Involving
                                  a Suicide Substrate  . . . . . . . . . . 355--374
            David S. Boukal and   
                    Ludek Berec   Single-species Models of the Allee
                                  Effect: Extinction Boundaries, Sex
                                  Ratios and Mate Encounters . . . . . . . 375--394
                      Anonymous   Pages 261--394 (7 October 2002)  . . . . ??

Journal of Theoretical Biology
Volume 218, Number 4, October 21, 2002

              Elliott Sober and   
                  Michael Steel   Testing the Hypothesis of Common
                                  Ancestry . . . . . . . . . . . . . . . . 395--408
                 Yudong Cai and   
            C. T. J. Dodson and   
             Andrew J. Doig and   
               Olaf Wolkenhauer   Information-Theoretic Analysis of
                                  Protein Sequences Shows that Amino Acids
                                  Self-cluster . . . . . . . . . . . . . . 409--418
                Otso Ovaskainen   Long-Term Persistence of Species and the
                                  SLOSS Problem  . . . . . . . . . . . . . 419--433
             Jukka Corander and   
   Mikko J. Sillanpää   A Unified Approach to Joint Modeling of
                                  Multiple Quantitative and Qualitative
                                  Traits in Gene Mapping . . . . . . . . . 435--446
               Takeshi Sugimoto   Darwinian Evolution Does Not Rule Out
                                  the Gaia Hypothesis  . . . . . . . . . . 447--455
          David C. Krakauer and   
              Karen M. Page and   
                 Stuart Sealfon   Module Dynamics of the GnRH Signal
                                  Transduction Network . . . . . . . . . . 457--470
             Kevin J. Flynn and   
           Michael J. R. Fasham   A Modelling Exploration of Vertical
                                  Migration by Phytoplankton . . . . . . . 471--484
               Martin Green and   
                Thomas Alerstam   The Problem of Estimating Wind Drift in
                                  Migrating Birds  . . . . . . . . . . . . 485--496
                  Ichiji Tasaki   Spread of Discrete Structural Changes in
                                  Synthetic Polyanionic Gel: a Model of
                                  Propagation of a Nerve Impulse . . . . . 497--505
         Frank J. Bruggeman and   
         Hans V. Westerhoff and   
                Jan B. Hoek and   
            Boris N. Kholodenko   Modular Response Analysis of Cellular
                                  Regulatory Networks  . . . . . . . . . . 507--520
              P. R. Shorten and   
             I. Vetharaniam and   
             T. K. Soboleva and   
                 G. C. Wake and   
                    S. R. Davis   Influence of Milking Frequency on
                                  Mammary Gland Dynamics . . . . . . . . . 521--530
                  R. Henery and   
                 L. Farnell and   
               W. G. Gibson and   
                  M. R. Bennett   Potential Fields in Vascular Smooth
                                  Muscle Generated by Transmitter Release
                                  from Sympathetic Varicosities  . . . . . 531--548
       István Karsai and   
    Gábor Balázsi   Organization of Work via a Natural
                                  Substance: Regulation of Nest
                                  Construction in Social Wasps . . . . . . 549--565
                      Anonymous   Pages 395--565 (21 October 2002) . . . . ??


Journal of Theoretical Biology
Volume 219, Number 1, November 7, 2002

             David B. Dusenbery   Ecological Models Explaining the Success
                                  of Distinctive Sperm and Eggs (Oogamy)   1--7
           Gregory L. Moore and   
              Costas D. Maranas   Predicting Out-of-Sequence Reassembly in
                                  DNA Shuffling  . . . . . . . . . . . . . 9--17
                 David Wick and   
                 Steven G. Self   What's the Matter with HIV-directed
                                  Killer T Cells?  . . . . . . . . . . . . 19--31
              Robert D. Guy and   
              Aaron L. Fogelson   Probabilistic Modeling of Platelet
                                  Aggregation: Effects of Activation Time
                                  and Receptor Occupancy . . . . . . . . . 33--53
          A. I. Dobrolyubov and   
                      G. Douchy   Peristaltic Transport as the Travelling
                                  Deformation Waves  . . . . . . . . . . . 55--61
                       M. Broom   A Unified Model of Dominance Hierarchy
                                  Formation and Maintenance  . . . . . . . 63--72
                 Xu Cai-Lin and   
                     Li Zi-Zhen   Effect of Diffusion and Spatially
                                  Varying Predation Risk on the Dynamics
                                  and Equilibrium Density of a
                                  Predator--Prey System  . . . . . . . . . 73--82
          L. H. A. Monteiro and   
               M. A. Bussab and   
           J. G. Chaui Berlinck   Analytical Results on a Wilson--Cowan
                                  Neuronal Network Modified Model  . . . . 83--91
              Karen M. Page and   
                Martin A. Nowak   Unifying Evolutionary Dynamics . . . . . 93--98
   Bjòrn Gilbert Nielsen   Entropic Elasticity in the Generation of
                                  Muscle Force --- a Theoretical Model . . 99--119
                Rongling Wu and   
              Chang-Xing Ma and   
           Ramon C. Littell and   
                 George Casella   A Statistical Model for the Genetic
                                  Origin of Allometric Scaling Laws in
                                  Biology  . . . . . . . . . . . . . . . . 121--135
                      Anonymous   Pages 1--135 (7 November 2002) . . . . . ??

Journal of Theoretical Biology
Volume 219, Number 2, November 21, 2002

                  S. Ghorai and   
                     N. A. Hill   Axisymmetric Bioconvection in a Cylinder 137--152
                Dagmar Iber and   
                Philip K. Maini   A Mathematical Model for Germinal Centre
                                  Kinetics and Affinity Maturation . . . . 153--175
          Christophe Fraser and   
           Neil M. Ferguson and   
              Frank De Wolf and   
              Azra C. Ghani and   
           Geoff P. Garnett and   
                Roy M. Anderson   Antigen-driven T-cell Turnover . . . . . 177--192
          Vitaly V. Ganusov and   
             Anatoly V. Brilkov   Estimating the Instability Parameters of
                                  Plasmid-Bearing Cells. I. Chemostat
                                  Culture  . . . . . . . . . . . . . . . . 193--205
               M. S. Penney and   
                  N. F. Britton   Modelling Natural Burst Firing in Nigral
                                  Dopamine Neurons . . . . . . . . . . . . 207--223
            Igor A. Sidorov and   
              Ken S. Hirsch and   
           Calvin B. Harley and   
            Dimiter S. Dimitrov   Cancer Cell Dynamics in Presence of
                                  Telomerase Inhibitors: Analysis of In
                                  Vitro Data . . . . . . . . . . . . . . . 225--233
            Mark A. Nicosia and   
              James G. Brasseur   A Mathematical Model for Estimating
                                  Muscle Tension in vivo during Esophageal
                                  Bolus Transport  . . . . . . . . . . . . 235--255
                    Boris Krupa   On the Number of Experiments Required to
                                  Find the Causal Structure of Complex
                                  Systems  . . . . . . . . . . . . . . . . 257--267
                S. P. Kotha and   
                     N. Guzelsu   Modeling the Tensile Mechanical Behavior
                                  of Bone along the Longitudinal Direction 269--279
                      Anonymous   Pages 137--279 (21 November 2002)  . . . ??

Journal of Theoretical Biology
Volume 219, Number 3, December 7, 2002

                Steven A. Frank   Immune Response to Parasitic Attack:
                                  Evolution of a Pulsed Character  . . . . 281--290
            Carl L. Gardner and   
           Joseph W. Jerome and   
            Robert S. Eisenberg   Electrodiffusion Model Simulation of
                                  Rectangular Current Pulses in a
                                  Voltage-Biased Biological Channel  . . . 291--299
               Tamiki Umeda and   
                     Kei Inouye   Possible Role of Contact Following in
                                  the Generation of Coherent Motion of
                                  Dictyostelium Cells  . . . . . . . . . . 301--308
                  Emi Shudo and   
                      Yoh Iwasa   Optimal Defense Strategy: Storage vs.
                                  New Production . . . . . . . . . . . . . 309--323
          Michael J. Denton and   
          Craig J. Marshall and   
                  Michael Legge   The Protein Folds as Platonic Forms: New
                                  Support for the Pre-Darwinian Conception
                                  of Evolution by Natural Law  . . . . . . 325--342
               Yuri Mansury and   
                Mark Kimura and   
                  Jose Lobo and   
            Thomas S. Deisboeck   Emerging Patterns in Tumor Systems:
                                  Simulating the Dynamics of Multicellular
                                  Clusters with an Agent-based Spatial
                                  Agglomeration Model  . . . . . . . . . . 343--370
                     L. M. Wahl   Evolving the Division of Labour:
                                  Generalists, Specialists and Task
                                  Allocation . . . . . . . . . . . . . . . 371--388
              R. J. P. Williams   The Problem of Proton Transfer in
                                  Membranes  . . . . . . . . . . . . . . . 389--396
                   M. Broom and   
                    C. Cannings   Modelling Dominance Hierarchy formation
                                  as a Multi-player game . . . . . . . . . 397--413
                      Anonymous   Pages 281--413 (7 December 2002) . . . . ??

Journal of Theoretical Biology
Volume 219, Number 4, December 21, 2002

            Craig A. Aumann and   
                  E. David Ford   Modeling Tree Water Flow as an
                                  Unsaturated Flow through a Porous Medium 415--429
            Craig A. Aumann and   
                  E. David Ford   Parameterizing a Model of Douglas Fir
                                  Water Flow Using a Tracheid-level Model  431--462
          Rampal S. Etienne and   
               C. J. Nagelkerke   Non-equilibria in Small Metapopulations:
                                  Comparing the Deterministic Levins Model
                                  with its Stochastic Counterpart  . . . . 463--478
                Birgit Erni and   
              Felix Liechti and   
                 Bruno Bruderer   Stopover Strategies in Passerine Bird
                                  Migration: a Simulation Study  . . . . . 479--493
          Mario Pineda-Krch and   
              Kari Lehtilä   Cell Lineage Dynamics in Stratified
                                  Shoot Apical Meristems . . . . . . . . . 495--505
        Jonathan G. Hillier and   
           A. Nicholas E. Birch   Travelling Waves of Resistance in a
                                  Bi-trophic Pest Adaptation Model . . . . 507--519
                   Jean Lehmann   Amplification of the Sequences
                                  Displaying the Pattern RNY in the RNA
                                  World: the Translation $ \to $
                                  Translation/Replication Hypothesis . . . 521--537
                 Wentian Li and   
                    Yaning Yang   Zipf's Law in Importance of Genes for
                                  Cancer Classification Using Microarray
                                  Data . . . . . . . . . . . . . . . . . . 539--551
     João Dinis De Sousa   Are Genes for Fetal Over-exploitation
                                  Outlaws? . . . . . . . . . . . . . . . . 553--554
                      Anonymous   Pages 415--554 (21 December 2002)  . . . ??


Journal of Theoretical Biology
Volume 220, Number 1, January 7, 2003

           Timothy E. Allen and   
     Bernhard ò. Palsson   Sequence-Based Analysis of Metabolic
                                  Demands for Protein Synthesis in
                                  Prokaryotes  . . . . . . . . . . . . . . 1--18
               Reiner A. Veitia   Nonlinear Effects in Macromolecular
                                  Assembly and Dosage Sensitivity  . . . . 19--25
  M. Aldana-González and   
                   G. Cocho and   
                H. Larralde and   
      G. Martínez-Mekler   Translocation Properties of Primitive
                                  Molecular Machines and Their Relevance
                                  to the Structure of the Genetic Code . . 27--45
               Steffen Huck and   
          Hans-Theo Normann and   
            Jörg Oechssler   Zero-Knowledge Cooperation in Dilemma
                                  Games  . . . . . . . . . . . . . . . . . 47--54
                  Seiji Ono and   
            Kazuharu Misawa and   
                   Kazuki Tsuji   Effect of Group Selection on the
                                  Evolution of Altruistic Behavior . . . . 55--66
          Lee Alan Dugatkin and   
             Michael Perlin and   
                   Ronald Atlas   The Evolution of Group-beneficial Traits
                                  in the Absence of Between-group
                                  Selection  . . . . . . . . . . . . . . . 67--74
                 J. Grasman and   
             J. W. Brascamp and   
          J. L. Van Leeuwen and   
                  B. Van Putten   The Multifractal Structure of Arterial
                                  Trees  . . . . . . . . . . . . . . . . . 75--82
              Chung-Seon Yi and   
          Aaron L. Fogelson and   
            James P. Keener and   
              Charles S. Peskin   A Mathematical Study of Volume Shifts
                                  and Ionic Concentration Changes during
                                  Ischemia and Hypoxia . . . . . . . . . . 83--106
                Takuyo Aita and   
                  Yuzuru Husimi   Statistical Formulae of the Energy
                                  Distribution among a Globular Protein
                                  Structure Ensemble . . . . . . . . . . . 107--121
          Carole J. Proctor and   
                 Mark Broom and   
               Graeme D. Ruxton   A Communication-Based Spatial Model of
                                  Antipredator Vigilance . . . . . . . . . 123--137
                      Anonymous   Pages 1--137 (7 January 2003)  . . . . . ??

Journal of Theoretical Biology
Volume 220, Number 2, January 21, 2003

          Michael F. Bruist and   
                     Eric Myers   Discrete and Continuous Mathematical
                                  Models of DNA Branch Migration . . . . . 139--156
               Mark A. Changizi   Relationship between Number of Muscles,
                                  Behavioral Repertoire Size, and
                                  Encephalization in Mammals . . . . . . . 157--168
              Benjamin Kerr and   
              Marcus W. Feldman   Carving the Cognitive Niche: Optimal
                                  Learning Strategies in Homogeneous and
                                  Heterogeneous Environments . . . . . . . 169--188
           Gauri R. Pradhan and   
            Sagar A. Pandit and   
             Anil D. Gangal and   
                   V. Sitaramam   Shape anisotropy of lipid molecules and
                                  Voids  . . . . . . . . . . . . . . . . . 189--199
           Trachette L. Jackson   Intracellular Accumulation and Mechanism
                                  of Action of Doxorubicin in a
                                  Spatio-temporal Tumor Model  . . . . . . 201--213
          Hiroyuki Yokomizo and   
              Jin Yamashita and   
                      Yoh Iwasa   Optimal Conservation Effort for a
                                  Population in a Stochastic Environment   215--231
               P. Etchegoin and   
               M. Nöllmann   A Model for Protein--DNA Interaction
                                  Dynamics . . . . . . . . . . . . . . . . 233--239
                   H. Allen Orr   A Minimum on the Mean Number of Steps
                                  Taken in Adaptive Walks  . . . . . . . . 241--247
                   R. Steck and   
                P. Niederer and   
              M. L. Knothe Tate   A Finite Element Analysis for the
                                  Prediction of Load-induced Fluid Flow
                                  and Mechanochemical Transduction in Bone 249--259
               R. Bundschuh and   
                   F. Hayot and   
                 C. Jayaprakash   The Role of Dimerization in Noise
                                  Reduction of Simple Genetic Networks . . 261--269
                R. Bruce Martin   Fatigue Damage, Remodeling, and the
                                  Minimization of Skeletal Weight  . . . . 271--276
                      Anonymous   Pages 139--276 (21 January 2003) . . . . ??

Journal of Theoretical Biology
Volume 220, Number 3, February 7, 2003

                   M. Haeri and   
                 D. Asemani and   
                Sh. Gharibzadeh   Modeling of Pain Using Artificial Neural
                                  Networks . . . . . . . . . . . . . . . . 277--284
         Wolfgang Schreiner and   
               Rudolf Karch and   
             Martin Neumann and   
         Friederike Neumann and   
         Susanne M. Roedler and   
                   Georg Heinze   Heterogeneous Perfusion is a Consequence
                                  of Uniform Shear Stress in Optimized
                                  Arterial Tree Models . . . . . . . . . . 285--301
       Joseph J. Luczkovich and   
        Stephen P. Borgatti and   
         Jeffrey C. Johnson and   
              Martin G. Everett   Defining and Measuring Trophic Role
                                  Similarity in Food Webs Using Regular
                                  Equivalence  . . . . . . . . . . . . . . 303--321
          R. J. P. Williams and   
J. J. R. Fraústo Da Silva   Evolution was Chemically Constrained . . 323--343
              Richard Mcelreath   Reputation and the Evolution of Conflict 345--357
            Youhei Fujitani and   
               Ichizo Kobayashi   Asymmetric Random Walk in a Reaction
                                  Intermediate of Homologous Recombination 359--370
               M. Sismilich and   
              M. I. Menzies and   
               P. W. Gandar and   
              P. E. Jameson and   
                     J. Clemens   Development of a Mathematical Method for
                                  Classifying and Comparing Tree
                                  Architecture Using Parameters from a
                                  Topological Model of a Trifurcating
                                  Botanical Tree . . . . . . . . . . . . . 371--391
                     Addy Pross   The Driving Force for Life's Emergence:
                                  Kinetic and Thermodynamic Considerations 393--406
                      Anonymous   Pages 277--406 (7 February 2003) . . . . ??

Journal of Theoretical Biology
Volume 220, Number 4, February 21, 2003

                 Herbert Gintis   The Hitchhiker's Guide to Altruism:
                                  Gene-culture Coevolution, and the
                                  Internalization of Norms . . . . . . . . 407--418
        Matthew V. Thompson and   
            N. Michele Holbrook   Application of a Single-solute
                                  Non-steady-state Phloem Model to the
                                  Study of Long-distance Assimilate
                                  Transport  . . . . . . . . . . . . . . . 419--455
           Stuart A. Samuel and   
                     Gezhi Weng   Characterization of a Branch of the
                                  Phylogenetic Tree  . . . . . . . . . . . 457--468
             Dusan Lazár   Chlorophyll a Fluorescence Rise Induced
                                  by High Light Illumination of
                                  Dark-adapted Plant Tissue Studied by
                                  Means of a Model of Photosystem II and
                                  Considering Photosystem II Heterogeneity 469--503
      Günter P. Wagner and   
               Peter F. Stadler   Quasi-Independence, Homology and the
                                  Unity of Type: a Topological Theory of
                                  Characters . . . . . . . . . . . . . . . 505--527
                 Jan T. Kim and   
           Thomas Martinetz and   
                  Daniel Polani   Bioinformatic Principles Underlying the
                                  Information Content of Transcription
                                  Factor Binding Sites . . . . . . . . . . 529--544
           Philip Hahnfeldt and   
              Judah Folkman and   
                    Lynn Hlatky   Minimizing Long-Term Tumor Burden: The
                                  Logic for Metronomic Chemotherapeutic
                                  Dosing and its Antiangiogenic Basis  . . 545--554
                      Anonymous   Pages 407--554 (21 February 2003)  . . . ??


Journal of Theoretical Biology
Volume 221, Number 1, March 7, 2003

              D. V. O'Toole and   
             P. A. Robinson and   
               M. R. Myerscough   Self-organized Criticality in Ant Brood
                                  Tending  . . . . . . . . . . . . . . . . 1--14
              D. V. O'Toole and   
             P. A. Robinson and   
               M. R. Myerscough   Self-Organized Criticality and Emergent
                                  Oscillations in Models of Termite
                                  Architecture with Crowding . . . . . . . 15--27
              M. Rosandi\'c and   
                    V. Paar and   
                       I. Basar   Key-String Segmentation Algorithm and
                                  Higher-Order Repeat 16mer (54 copies) in
                                  Human Alpha Satellite DNA in Chromosome
                                  7  . . . . . . . . . . . . . . . . . . . 29--37
             Toshiyuki Nakajima   Probabilities of Encounters between
                                  Objects in Biological Systems 2:
                                  Cognizer View  . . . . . . . . . . . . . 39--51
         Georg Nöldeke and   
                Larry Samuelson   Strategic Choice Handicaps When Females
                                  Seek High Male Net Viability . . . . . . 53--59
             Derik Castillo and   
Jorge X. Velasco-Hernández   Coexistence in a Competitive
                                  Parasitoid-host System . . . . . . . . . 61--77
                 Hartmut Kuthan   A Mathematical Model of Single Target
                                  Site Location by Brownian Movement in
                                  Subcellular Compartments . . . . . . . . 79--87
                  H. X. Zhu and   
                  J. R. Melrose   A Mechanics Model for the Compression of
                                  Plant and Vegetative Tissues . . . . . . 89--101
         Michael A. Fishman and   
                 Lewi Stone and   
                    Arnon Lotem   Fertility Assurance through Extrapair
                                  Fertilizations and Male Paternity
                                  Defense  . . . . . . . . . . . . . . . . 103--114
                Yu-Dong Cai and   
               Xiao-Jun Liu and   
                Xue-Biao Xu and   
                  Kuo-Chen Chou   Support Vector Machines for Prediction
                                  of Protein Domain Structural Class . . . 115--120
                   K. Glass and   
                 B. T. Grenfell   Antibody Dynamics in Childhood Diseases:
                                  Waning and Boosting of Immunity and the
                                  Impact of Vaccination  . . . . . . . . . 121--131
     Pierre-André Doriot   Some Unusual Considerations about Vessel
                                  Walls and Wall Stresses  . . . . . . . . 133--141
           Jonathan C. K. Wells   The Thrifty Phenotype Hypothesis:
                                  Thrifty Offspring or Thrifty Mother? . . 143--161
                      Anonymous   Pages 1--161 (7 March 2003)  . . . . . . ??

Journal of Theoretical Biology
Volume 221, Number 2, March 21, 2003

               J. W. Durkee and   
               P. P. Antich and   
                M. A. Lewis and   
                   R. W. Parkey   A Fully Coupled Binary Biochemical
                                  Reactive-diffusion Model with Analytic
                                  Solution . . . . . . . . . . . . . . . . 163--191
             Michael B. Bonsall   The role of Variability and Risk on the
                                  Persistence of Shared-enemy,
                                  Predator-prey Assemblages  . . . . . . . 193--204
               Wei-Yin Chen and   
    Phanidhar R. Annamreddy and   
                      L. T. Fan   Modeling Growth of a Heterogeneous Tumor 205--227
            Tomoyoshi Yoshigaki   Why Does a Cleavage Plane Develop
                                  Parallel to the Spindle Axis in Conical
                                  Sand Dollar Eggs? A Key Question for
                                  Clarifying the Mechanism of Contractile
                                  Ring Positioning . . . . . . . . . . . . 229--244
               Gary J. Kargacin   Responses of Ca$^{2+}$-binding Proteins
                                  to Localized, Transient Changes in
                                  Intracellular [Ca$^{2+}$]  . . . . . . . 245--258
         Djordje L. Nikolic and   
                Daniel J. Lacks   Size Scaling of Mutation Avalanches in a
                                  Model for Protein Evolution  . . . . . . 259--267
          Steven S.-S. Wang and   
          Vasiliki Kazantzi and   
                Theresa A. Good   A Kinetic Analysis of the Mechanism of $
                                  \beta $-Amyloid Induced G Protein
                                  Activation . . . . . . . . . . . . . . . 269--278
                  P. Seiler and   
                    A. Pant and   
                  J. K. Hedrick   A Systems Interpretation for
                                  Observations of Bird V-formations  . . . 279--287
              Shusaku Tohya and   
          Atsushi Mochizuki and   
                      Yoh Iwasa   Difference in the Retinal Cone Mosaic
                                  Pattern Between Zebrafish and Medaka:
                                  Cell-Rearrangement Model . . . . . . . . 289--300
    Anastassia M. Makarieva and   
         Victor G. Gorshkov and   
                    Bai-Lian Li   A Note on Metabolic Rate Dependence on
                                  Body Size in Plants and Animals  . . . . 301--307
                      Anonymous   Pages 163--307 (21 March 2003) . . . . . ??

Journal of Theoretical Biology
Volume 221, Number 3, April 7, 2003

           Markus W. Covert and   
            Bernhard O. Palsson   Constraints-based models: Regulation of
                                  Gene Expression Reduces the Steady-state
                                  Solution Space . . . . . . . . . . . . . 309--325
 Szabolcs Számadó   Threat Displays are not Handicaps  . . . 327--348
           Gennady Bocharov and   
             Paul Klenerman and   
                    Stephan Ehl   Modelling the Dynamics of LCMV Infection
                                  in Mice: II. Compartmental Structure and
                                  Immunopathology  . . . . . . . . . . . . 349--378
          Tetsuya Kobayashi and   
                Luonan Chen and   
                Kazuyuki Aihara   Modeling Genetic Switches with Positive
                                  Feedback Loops . . . . . . . . . . . . . 379--399
               Joshua L. Cherry   Genome Size and Operon Content . . . . . 401--410
           Atsushi Yamauchi and   
                  Yukiko Kamite   Facultative Sexual Reproduction Under
                                  Frequency-Dependent Selection on a
                                  Single Locus . . . . . . . . . . . . . . 411--424
              Massimo Di Giulio   The Universal Ancestor was a Thermophile
                                  or a Hyperthermophile: Tests and Further
                                  Evidence . . . . . . . . . . . . . . . . 425--436
         Hans-Uno Bengtsson and   
             Patrik Edén   A Simple Model for the Arterial System   437--443
        Natalia L. Komarova and   
                Martin A. Nowak   Language Dynamics in Finite Populations  445--457
                      Anonymous   Pages 309--457 (7 April 2003)  . . . . . ??

Journal of Theoretical Biology
Volume 221, Number 4, April 21, 2003

              Ryohji Takano and   
          Atsushi Mochizuki and   
                      Yoh Iwasa   Possibility of Tissue Separation Caused
                                  by Cell Adhesion . . . . . . . . . . . . 459--474
        Antonio S. Torralba and   
             Yoel Rodriguez and   
              Francisco Montero   Phenomenological Definition of Response
                                  Times with Application to Metabolic
                                  Reactions  . . . . . . . . . . . . . . . 475--489
               Hongyun Wang and   
          Charles S. Peskin and   
              Timothy C. Elston   A Robust Numerical Algorithm for
                                  Studying Biomolecular Transport
                                  Processes  . . . . . . . . . . . . . . . 491--511
             M. E. Gracheva and   
                   J. D. Gunton   Intercellular Communication Via
                                  Intracellular Calcium Oscillations . . . 513--518
              Sonya J. Snedecor   Comparison of three Kinetic Models of
                                  HIV-1 Infection: Implications for
                                  Optimization of Treatment  . . . . . . . 519--541
               L. H. Pojoga and   
                R. H. Hilderman   A Theoretical and Experimental Approach
                                  to the Use of Single Wavelength Calcium
                                  Indicators . . . . . . . . . . . . . . . 543--557
             Jon F. Wilkins and   
                     David Haig   Inbreeding, Maternal Care and Genomic
                                  Imprinting . . . . . . . . . . . . . . . 559--564
            Graham J. Capps and   
           David C. Samuels and   
            Patrick F. Chinnery   A Model of the Nuclear Control of
                                  Mitochondrial DNA Replication  . . . . . 565--583
               Rustom Antia and   
          Carl T. Bergstrom and   
         Sergei S. Pilyugin and   
             Susan M. Kaech and   
                     Rafi Ahmed   Models of CD8+ Responses: 1. What is the
                                  Antigen-independent Proliferation
                                  Program  . . . . . . . . . . . . . . . . 585--598
                Takuyo Aita and   
               Motonori Ota and   
                  Yuzuru Husimi   An in silico Exploration of the Neutral
                                  Network in Protein Sequence Space  . . . 599--613
                 Hubert Hug and   
                 Rainer Schuler   Measurement of the Number of Molecules
                                  of a Single mRNA Species in a Complex
                                  mRNA Preparation . . . . . . . . . . . . 615--624
               Yuri Lyubich and   
                Valery Kirzhner   Mathematical Frameworks for Phenotypical
                                  Selection and Epistasis  . . . . . . . . 625--638
            Christophe Lett and   
               Pierre Auger and   
       Rafael Bravo De La Parra   Migration Frequency and the Persistence
                                  of Host--Parasitoid Interactions . . . . 639--654
              Erik M. Rauch and   
              Hiroki Sayama and   
                 Yaneer Bar-Yam   Dynamics and Genealogy of Strains in
                                  Spatially Extended Host--Pathogen Models 655--664
        François Rousset   A Minimal Derivation of Convergence
                                  Stability Measures . . . . . . . . . . . 665--668
              R. P. Bywater and   
                A. Sorensen and   
                   P. Rogen and   
                   P. G. Hjorth   ``Construction of the Simplest Model to
                                  Explain Complex Receptor Activation
                                  Kinetics'' [Journal of Theoretical
                                  Biology \bf 218 (2002) 139--147] . . . . 669--669
               G. K. Taylor and   
                A. L. R. Thomas   ``Animal Flight Dynamics II.
                                  Longitudinal Stability in Flapping
                                  flight'' [Journal of Theoretical Biology
                                  \bf 214 (2002) 351--370] . . . . . . . . 671--671
                      Anonymous   Pages 459--671 (21 April 2003) . . . . . ??


Journal of Theoretical Biology
Volume 222, Number 1, May 7, 2003

          Andrew M. Gregson and   
               Adam G. Hart and   
           Michael Holcombe and   
         Francis L. W. Ratnieks   Partial nectar loads as a cause of
                                  multiple nectar transfer in the honey
                                  bee (\bionameApis mellifera): a
                                  simulation model . . . . . . . . . . . . 1--8
                 Can Kesmir and   
                 Rob J. De Boer   A spatial model of germinal center
                                  reactions: cellular adhesion based
                                  sorting of B cells results in efficient
                                  affinity maturation  . . . . . . . . . . 9--22
           Brian P. Ingalls and   
               Herbert M. Sauro   Sensitivity analysis of stoichiometric
                                  networks: an extension of metabolic
                                  control analysis to non-steady state
                                  trajectories . . . . . . . . . . . . . . 23--36
                 Stefan Berking   A model for budding in hydra: pattern
                                  formation in concentric rings  . . . . . 37--52
              Becca Asquith and   
          Charles R. M. Bangham   The dynamics of T-cell fratricide:
                                  application of a robust approach to
                                  mathematical modelling in immunology . . 53--69
          John C. McLachlan and   
                   Helen Storey   Hot male: can sex in humans be modified
                                  by temperature?  . . . . . . . . . . . . 71--72
                    D. M. Lewis   Planktonic encounter rates in
                                  homogeneous isotropic turbulence: the
                                  case of predators with limited fields of
                                  sensory perception . . . . . . . . . . . 73--97
Moisés Santillán and   
Ricardo Hernández-Pérez and   
         Rodolfo Delgado-Lezama   A numeric study of the noise-induced
                                  tremor in a mathematical model of the
                                  stretch reflex . . . . . . . . . . . . . 99--115
          R. Ernesto Blanco and   
            Rodolfo Gambini and   
       Richard A. Fariña   Mechanical model for theoretical
                                  determination of maximum running speed
                                  in mammals . . . . . . . . . . . . . . . 117--125
           Jason P. Dworkin and   
            Antonio Lazcano and   
              Stanley L. Miller   The roads to and from the RNA world  . . 127--134
Juan Armando Sánchez and   
                   Wei Zeng and   
            Vitor R. Coluci and   
               Carl Simpson and   
               Howard R. Lasker   How similar are branching networks in
                                  nature? A view from the ocean: Caribbean
                                  gorgonian corals . . . . . . . . . . . . 135--138
                      Anonymous   IFC-Editorial board  . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--138 (7 May 2003)  . . . . . . . ??

Journal of Theoretical Biology
Volume 222, Number 2, May 21, 2003

          Fumihiko Takeuchi and   
          Yasuhiro Futamura and   
          Hiroshi Yoshikura and   
                 Kenji Yamamoto   Statistics of trinucleotides in coding
                                  sequences and evolution  . . . . . . . . 139--149
                  Jianfeng Feng   Effects of correlated and synchronized
                                  stochastic inputs to leaky integrator
                                  neuronal model . . . . . . . . . . . . . 151--162
                 P. A. Robinson   Neurophysical theory of coherence and
                                  correlations of electroencephalographic
                                  and electrocorticographic signals  . . . 163--175
               V. R. Chechetkin   Block structure and stability of the
                                  genetic code . . . . . . . . . . . . . . 177--188
                  Carlo Ricotta   On parametric evenness measures  . . . . 189--197
   Romualdo Pastor-Satorras and   
                 Eric Smith and   
          Ricard V. Solé   Evolving protein interaction networks
                                  through gene duplication . . . . . . . . 199--210
              Alain Goriely and   
                  Michael Tabor   Biomechanical models of hyphal growth in
                                  actinomycetes  . . . . . . . . . . . . . 211--218
               S. J. Powers and   
                   P. Brain and   
                   P. W. Barlow   First-order differential equation models
                                  with estimable parameters as functions
                                  of environmental variables and their
                                  application to a study of vascular
                                  development in young hybrid aspen stems  219--232
              Ross Cressman and   
            József Garay   Evolutionary stability in
                                  Lotka--Volterra systems  . . . . . . . . 233--245
                 Mark Zajac and   
            Gerald L. Jones and   
               James A. Glazier   Simulating convergent extension by way
                                  of anisotropic differential adhesion . . 247--259
       Juan Carlos Letelier and   
       Gonzalo Marín and   
                 Jorge Mpodozis   Autopoietic and $ (M, R) $ systems . . . 261--272
                      Anonymous   IFC-Editorial board  . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 139--272 (21 May 2003) . . . . . . ??

Journal of Theoretical Biology
Volume 222, Number 3, June 7, 2003

                Jarle Tufto and   
                  Kjetil Hindar   Effective size in management and
                                  conservation of subdivided populations   273--281
                Akiko Sakai and   
                   Satoki Sakai   Size-dependent ESS sex allocation in
                                  wind-pollinated cosexual plants:
                                  fecundity vs. stature effects  . . . . . 283--295
        József Garay and   
            Zoltán Varga   Coincidence of ESAD and ESS in
                                  dominant-recessive hereditary systems    297--305
            Jason Shoemaker and   
          Gregory T. Reeves and   
               Shakti Gupta and   
         Sergei S. Pilyugin and   
                Thomas Egli and   
                    Atul Narang   The dynamics of single-substrate
                                  continuous cultures: the role of
                                  transport enzymes  . . . . . . . . . . . 307--322
          David M. Prescott and   
             A. Ehrenfeucht and   
                   G. Rozenberg   Template-guided recombination for IES
                                  elimination and unscrambling of genes in
                                  stichotrichous ciliates  . . . . . . . . 323--330
       James A. R. Marshall and   
               Jonathan E. Rowe   Kin selection may inhibit the evolution
                                  of reciprocation . . . . . . . . . . . . 331--335
              J. T. Ottesen and   
                   M. Danielsen   Modeling ventricular contraction with
                                  heart rate changes . . . . . . . . . . . 337--346
           Nico Stollenwerk and   
           Vincent A. A. Jansen   Meningitis, pathogenicity near
                                  criticality: the epidemiology of
                                  meningococcal disease as a model for
                                  accidental pathogens . . . . . . . . . . 347--359
          William I. Newman and   
              Jorge A. Lazareff   A mathematical model for self-limiting
                                  brain tumors . . . . . . . . . . . . . . 361--371
             David H. Brown and   
                  Alan Hastings   Resistance may be futile: dispersal
                                  scales and selection for disease
                                  resistance in competing plants . . . . . 373--388
           M. Xavier Suresh and   
                    K. Veluraja   Conformations of terminal
                                  sialyloligosaccharide fragments --- a
                                  molecular dynamics study . . . . . . . . 389--402
        Jocelyn A. Laurence and   
          David R. McKenzie and   
              Kenneth R. Foster   Application of the heat equation to the
                                  calculation of temperature rises from
                                  pulsed microwave exposure  . . . . . . . 403--405
                      Anonymous   IFC-Editorial board  . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 273--406 (7 June 2003) . . . . . . ??

Journal of Theoretical Biology
Volume 222, Number 4, June 21, 2003

                      Anonymous   Author Index for Volume 222  . . . . . . I--II
                      Anonymous   Subject Index for Volume 222 . . . . . . III--VII
                Qingwu Yang and   
            Paul A. Lindahl and   
              Jeffrey J. Morgan   Dynamic responses of protein homeostatic
                                  regulatory mechanisms to perturbations
                                  from steady state  . . . . . . . . . . . 407--423
             Laura G. Perry and   
          Claudia Neuhauser and   
          Susan M. Galatowitsch   Founder control and coexistence in a
                                  simple model of asymmetric competition
                                  for light  . . . . . . . . . . . . . . . 425--436
                   Juan Lin and   
            Viggo Andreasen and   
          Renato Casagrandi and   
                 Simon A. Levin   Traveling waves in a model of influenza
                                  A drift  . . . . . . . . . . . . . . . . 437--445
               Jinya Otsuka and   
               Nobuyoshi Sugaya   Advanced formulation of base pair
                                  changes in the stem regions of ribosomal
                                  RNAs; its application to mitochondrial
                                  rRNAs for resolving the phylogeny of
                                  animals  . . . . . . . . . . . . . . . . 447--460
            Mayuko Nakamaru and   
                   Akira Sasaki   Can transitive inference evolve in
                                  animals playing the hawk-dove game?  . . 461--470
              Gordon Simons and   
                   Glenn Morton   The gene-orientation structure of
                                  eukaryotes . . . . . . . . . . . . . . . 471--475
              Charles Ofria and   
            Christoph Adami and   
              Travis C. Collier   Selective pressures on genomes in
                                  molecular evolution  . . . . . . . . . . 477--483
            Sean Ellermeyer and   
             Jerald Hendrix and   
               Nariman Ghoochan   A theoretical and empirical
                                  investigation of delayed growth response
                                  in the continuous culture of bacteria    485--494
               Takashi Kunisawa   Gene arrangements and branching orders
                                  of gram-positive bacteria  . . . . . . . 495--503
               Atsushi Yamauchi   Factors affecting binary sex evolution
                                  with respect to avoidance of vertical
                                  transmission of deleterious
                                  intracellular parasites  . . . . . . . . 505--515
              Brian D. Fath and   
          Heriberto Cabezas and   
       Christopher W. Pawlowski   Regime changes in ecological systems: an
                                  information theory approach  . . . . . . 517--530
                      Anonymous   IFC-Editorial board  . . . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 407--530 (21 June 2003)  ??


Journal of Theoretical Biology
Volume 223, Number 1, July 7, 2003

         Réka Albert and   
                 Hans G. Othmer   The topology of the regulatory
                                  interactions predicts the expression
                                  pattern of the segment polarity genes in
                                  \bionameDrosophila melanogaster  . . . . 1--18
                   K. Glass and   
                     Y. Xia and   
                 B. T. Grenfell   Interpreting time-series analyses for
                                  continuous-time biological
                                  models-measles as a case study . . . . . 19--25
              Joji M. Otaki and   
              Haruhiko Yamamoto   Length analyses of Drosophila odorant
                                  receptors  . . . . . . . . . . . . . . . 27--37
          Graeme J. Ackland and   
           Michael A. Clark and   
              Timothy M. Lenton   Catastrophic desert formation in
                                  Daisyworld . . . . . . . . . . . . . . . 39--44
              Stefan Wuchty and   
               Peter F. Stadler   Centers of complex networks  . . . . . . 45--53
               Eberhard O. Voit   Biochemical and genomic regulation of
                                  the trehalose cycle in yeast: review of
                                  observations and canonical model
                                  analysis . . . . . . . . . . . . . . . . 55--78
        Michael R. Heithaus and   
                 Alejandro Frid   Optimal diving under the risk of
                                  predation  . . . . . . . . . . . . . . . 79--92
                   G. Lemon and   
               W. G. Gibson and   
                  M. R. Bennett   Metabotropic receptor activation,
                                  desensitization and sequestration --- I:
                                  modelling calcium and inositol
                                  1,4,5-trisphosphate dynamics following
                                  receptor activation  . . . . . . . . . . 93--111
                   G. Lemon and   
               W. G. Gibson and   
                  M. R. Bennett   Metabotropic receptor activation,
                                  desensitization and sequestration ---
                                  II: modelling the dynamics of the
                                  pleckstrin homology domain . . . . . . . 113--129
            John T. Manning and   
           Peter E. Bundred and   
                       P. Henzi   Melanin and HIV in sub-Saharan Africa    131--133
                      Anonymous   IFC-Editorial board  . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--134 (7 July 2003) . . . . . . . ??

Journal of Theoretical Biology
Volume 223, Number 2, July 21, 2003

              Samuel Bowles and   
             Jung-Kyoo Choi and   
              Astrid Hopfensitz   The co-evolution of individual behaviors
                                  and social institutions  . . . . . . . . 135--147
                  Emi Shudo and   
               Patsy Haccou and   
                      Yoh Iwasa   Optimal choice between feedforward and
                                  feedback control in gene expression to
                                  cope with unpredictable danger . . . . . 149--160
          H.-M. Müller and   
                   S. E. Koonin   Vector space classification of DNA
                                  sequences  . . . . . . . . . . . . . . . 161--169
              Q. J. A. Khan and   
                   A. F. Ghaleb   A study of prey-predator relations for
                                  mammals  . . . . . . . . . . . . . . . . 171--178
             Melissa D. Cox and   
             Mary R. Myerscough   A flexible model of foraging by a honey
                                  bee colony: the effects of individual
                                  behaviour on foraging success  . . . . . 179--197
              Wei-Mou Zheng and   
                        Fang Wu   In-phase implies large likelihood for
                                  independent codon model: distinguishing
                                  coding from non-coding sequences . . . . 199--203
                 Alexander Kamb   Mutation load, functional overlap, and
                                  synthetic lethality in the evolution and
                                  treatment of cancer  . . . . . . . . . . 205--213
              Mary V. Price and   
                John E. Mittler   Seed-cache exchange promotes coexistence
                                  and coupled consumer oscillations: a
                                  model of desert rodents as resource
                                  processors . . . . . . . . . . . . . . . 215--231
            James P. Keener and   
                Eric Cytrynbaum   The effect of spatial scale of resistive
                                  inhomogeneity on defibrillation of
                                  cardiac tissue . . . . . . . . . . . . . 233--248
 Moisés Santillán   Allometric scaling law in a simple
                                  oxygen exchanging network: possible
                                  implications on the biological
                                  allometric scaling laws  . . . . . . . . 249--257
                  K. L. Goh and   
            D. W. L. Hukins and   
                   R. M. Aspden   Critical length of collagen fibrils in
                                  extracellular matrix . . . . . . . . . . 259--261
         Jayanth R. Banavar and   
                   Amos Maritan   A comment on the protein folds as
                                  platonic forms . . . . . . . . . . . . . 263--265
               Julic C. Fox and   
                Tony M. Keaveny   Erratum to ``Trabecular eccentricity and
                                  bone adaptation'': [J. Theor. Biol. \bf
                                  212, 211--221] . . . . . . . . . . . . . 267--267
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 135--268 (21 July 2003)  . . . . . ??

Journal of Theoretical Biology
Volume 223, Number 3, August 7, 2003

               Mark W. Westneat   A biomechanical model for analysis of
                                  muscle force, power output and lower jaw
                                  motion in fishes . . . . . . . . . . . . 269--281
             Samuel Bernard and   
      Jacques Bélair and   
              Michael C. Mackey   Oscillations in cyclical neutropenia:
                                  new evidence based on mathematical
                                  modeling . . . . . . . . . . . . . . . . 283--298
         Bengt Nölting and   
      Wolfram Schälike and   
             Patrick Hampel and   
            Florian Grundig and   
          Siegfried Gantert and   
                Nicole Sips and   
           Wolfhard Bandlow and   
                   Phoebe X. Qi   Structural determinants of the rate of
                                  protein folding  . . . . . . . . . . . . 299--307
                    R. Drummond   Does a structural bridge exist between
                                  the DNA and the specialized cytoplasmic
                                  organelles during the early part of
                                  their development? A mechanism for the
                                  positioning of flagella and possibly
                                  other cytoplasmic organelles . . . . . . 309--312
    Stéphanie Portet and   
                Ovide Arino and   
                 Jany Vassy and   
    Damien Schoëvaërt   Organization of the cytokeratin network
                                  in an epithelial cell  . . . . . . . . . 313--333
                 Marco Archetti   A selfish origin for recombination . . . 335--346
            Bakhtier Vasiev and   
             Cornelis J. Weijer   Modelling of \bionameDictyostelium
                                  discoideum slug migration  . . . . . . . 347--359
              Michael Boots and   
                Roger G. Bowers   Baseline criteria and the evolution of
                                  hosts and parasites: $ D_0 $, $ R_0 $
                                  and competition for resources between
                                  strains  . . . . . . . . . . . . . . . . 361--365
              Jianfeng Feng and   
                      Guibin Li   The relationship between neuronal
                                  calcium concentration and firing rate
                                  during stochastic synaptic inputs  . . . 367--375
                David Penny and   
           Michael D. Hendy and   
               Anthony M. Poole   Testing fundamental evolutionary
                                  hypotheses . . . . . . . . . . . . . . . 377--385
              R. F. Rosenberger   The choice of cell lineages during the
                                  in vitro differentiation of mammalian
                                  embryonic stem cells . . . . . . . . . . 387--389
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 269--390 (7 August 2003) . . . . . ??

Journal of Theoretical Biology
Volume 223, Number 4, August 21, 2003

                      Anonymous   Author Index for Volume 223  . . . . . . I--II
                      Anonymous   Subject Index for Volume 223 . . . . . . III--VII
            Brian M. Murphy and   
         Benjamin H. Singer and   
               Denise Kirschner   On treatment of tuberculosis in
                                  heterogeneous populations  . . . . . . . 391--404
                Steven A. Frank   Somatic mosaicism and cancer: inference
                                  based on a conditional Luria--Delbrück
                                  distribution . . . . . . . . . . . . . . 405--412
               Gabriel Frey and   
            Christian J. Michel   Circular codes in archaeal genomes . . . 413--431
        Natalia L. Komarova and   
           Anirvan Sengupta and   
                Martin A. Nowak   Mutation-selection networks of cancer
                                  initiation: tumor suppressor genes and
                                  chromosomal instability  . . . . . . . . 433--450
             Gro Vang Amdam and   
                 Stig W. Omholt   The hive bee to forager transition in
                                  honeybee colonies: the double repressor
                                  hypothesis . . . . . . . . . . . . . . . 451--464
         Emmanuelle Fromont and   
          Dominique Pontier and   
                Michel Langlais   Disease propagation in connected host
                                  populations with density-dependent
                                  dynamics: the case of the Feline
                                  Leukemia Virus . . . . . . . . . . . . . 465--475
      Christoforos Nikolaou and   
              Yannis Almirantis   Mutually symmetric and complementary
                                  triplets: differences in their use
                                  distinguish systematically between
                                  coding and non-coding genomic sequences  477--487
           Yutaka Kobayashi and   
                 Norio Yamamura   Evolution of signal emission by
                                  non-infested plants growing near
                                  infested plants to avoid future risk . . 489--503
                   B. Adams and   
                    J. Carr and   
               T. M. Lenton and   
                       A. White   One-dimensional daisyworld: spatial
                                  interactions and pattern formation . . . 505--513
                 A. Gardner and   
                S. E. Reece and   
                     S. A. West   Even more extreme fertility insurance
                                  and the sex ratios of protozoan blood
                                  parasites  . . . . . . . . . . . . . . . 515--521
          Mojdeh Mohtashemi and   
                        Lik Mui   Evolution of indirect reciprocity by
                                  social information: the role of trust
                                  and reputation in evolution of altruism  523--531
        Antonio S. Torralba and   
      Yoel Rodríguez and   
              Francisco Montero   Corrigendum to ``Phenomenological
                                  definition of response times with
                                  application to metabolic reactions'':
                                  [J. theor. Biol. \bf 221, 475--489]  . . 533--533
        Antonio S. Torralba and   
      Yoel Rodríguez and   
              Francisco Montero   Erratum to ``Phenomenological definition
                                  of response times with application to
                                  metabolic reactions'': [J. theor. Biol.
                                  \bf 221, 475--489] . . . . . . . . . . . 535--535
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 391--536 (21 August 2003)  . . . . ??


Journal of Theoretical Biology
Volume 224, Number 1, September 7, 2003

                 G. Chowell and   
             P. W. Fenimore and   
      M. A. Castillo-Garsow and   
             C. Castillo-Chavez   SARS outbreaks in Ontario, Hong Kong and
                                  Singapore: the role of diagnosis and
                                  isolation as a control mechanism . . . . 1--8
            Charles A. Long and   
                G. P. Zhang and   
           Thomas F. George and   
               Claudine F. Long   Physical theory, origin of flight, and a
                                  synthesis proposed for birds . . . . . . 9--26
                 M. A. Ball and   
                   G. A. Parker   Sperm competition games: sperm selection
                                  by females . . . . . . . . . . . . . . . 27--42
                  W. Konrad and   
              A. Roth-Nebelsick   The dynamics of gas bubbles in conduits
                                  of vascular plants and implications for
                                  embolism repair  . . . . . . . . . . . . 43--61
             Hanspeter Kunz and   
                Peter Achermann   Simulation of circadian rhythm
                                  generation in the suprachiasmatic
                                  nucleus with locally coupled
                                  self-sustained oscillators . . . . . . . 63--78
          Russell B. Millar and   
              Marti J. Anderson   The kinetics of monospermic and
                                  polyspermic fertilization in
                                  free-spawning marine invertebrates . . . 79--85
                Iman Famili and   
            Bernhard O. Palsson   Systemic metabolic reactions are
                                  obtained by singular value decomposition
                                  of genome-scale stoichiometric matrices  87--96
            Ernesto Bosatta and   
      Göran I. Ågren   Exact solutions to the
                                  continuous-quality equation for soil
                                  organic matter turnover  . . . . . . . . 97--105
        John P. Buonaccorsi and   
            Joseph Elkinton and   
                Walt Koenig and   
          Richard P. Duncan and   
                 Dave Kelly and   
                  Victoria Sork   Measuring mast seeding behavior:
                                  relationships among population
                                  variation, individual variation and
                                  synchrony  . . . . . . . . . . . . . . . 107--114
       Karthik Panchanathan and   
                    Robert Boyd   A tale of two defectors: the importance
                                  of standing for evolution of indirect
                                  reciprocity  . . . . . . . . . . . . . . 115--126
                Yinglei Lai and   
                    Fengzhu Sun   Microsatellite mutations during the
                                  polymerase chain reaction: mean field
                                  approximations and their applications    127--137
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--138 (7 September 2003)  . . . . ??

Journal of Theoretical Biology
Volume 224, Number 2, September 21, 2003

                Kris De Jaegher   Error-proneness as a handicap signal . . 139--152
              Roeland Merks and   
            Alfons Hoekstra and   
              Jaap Kaandorp and   
                    Peter Sloot   Models of coral growth: spontaneous
                                  branching, compactification and the
                                  Laplacian growth assumption  . . . . . . 153--166
          Hiroyuki Yokomizo and   
               Patsy Haccou and   
                      Yoh Iwasa   Conservation effort and assessment of
                                  population size in fluctuating
                                  environments . . . . . . . . . . . . . . 167--182
               Simcha Lev-Yadun   Weapon (thorn) automimicry and mimicry
                                  of aposematic colorful thorns in plants  183--188
               C. J. Pennycuick   The concept of energy height in animal
                                  locomotion: separating mechanics from
                                  physiology . . . . . . . . . . . . . . . 189--203
              M. J. Brennan and   
              S. J. Elliott and   
                 P. Bonello and   
               J. F. V. Vincent   The ``click'' mechanism in dipteran
                                  flight: if it exists, then what effect
                                  does it have?  . . . . . . . . . . . . . 205--213
          M. C. Lagomarsino and   
                 F. Capuani and   
                     C. P. Lowe   A simulation study of the dynamics of a
                                  driven filament in an Aristotelian fluid 215--224
                 Marcello Lappa   The growth and the fluid dynamics of
                                  protein crystals and soft organic
                                  tissues: models and simulations,
                                  similarities and differences . . . . . . 225--240
               Akira Sasaki and   
                Martin A. Nowak   Mutation landscapes  . . . . . . . . . . 241--247
       Hugo A. van den Berg and   
                  David A. Rand   Antigen presentation on MHC molecules as
                                  a diversity filter that enhances immune
                                  efficacy . . . . . . . . . . . . . . . . 249--267
            A. Korobeinikov and   
                P. K. Maini and   
                   W. J. Walker   Estimation of effective vaccination
                                  rate: pertussis in New Zealand as a case
                                  study  . . . . . . . . . . . . . . . . . 269--275
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 139--276 (21 September 2003) . . . ??

Journal of Theoretical Biology
Volume 224, Number 3, October 7, 2003

              Massimo Di Giulio   The ancestor of the Bacteria domain was
                                  a hyperthermophile . . . . . . . . . . . 277--283
         Markku J. Lampinen and   
                  Tuula Noponen   Thermodynamic analysis of the
                                  interaction of the xylem water and
                                  phloem sugar solution and its
                                  significance for the cohesion theory . . 285--298
               Peter Jagers and   
                  Fima Klebaner   Random variation and concentration
                                  effects in PCR . . . . . . . . . . . . . 299--304
               Chunfang Wei and   
            Philip M. Lintilhac   Loss of stability --- a new model for
                                  stress relaxation in plant cell walls    305--312
           Sharon J. Wiback and   
    Radhakrishnan Mahadevan and   
     Bernhard Ò. Palsson   Reconstructing metabolic flux vectors
                                  from extreme pathways: defining the $
                                  \alpha $-spectrum  . . . . . . . . . . . 313--324
               Yuri Mansury and   
            Thomas S. Deisboeck   The impact of ``search precision'' in an
                                  agent-based tumor model  . . . . . . . . 325--337
               Hiroto Shoji and   
                  Yoh Iwasa and   
                  Shigeru Kondo   Stripes, spots, or reversed spots in
                                  two-dimensional Turing systems . . . . . 339--350
              Bas E. Dutilh and   
                 Rob J. de Boer   Decline in excision circles requires
                                  homeostatic renewal or homeostatic death
                                  of naive T cells . . . . . . . . . . . . 351--358
             Roberto Ros\`a and   
            Andrea Pugliese and   
              Rachel Norman and   
                Peter J. Hudson   Thresholds for disease persistence in
                                  models for tick-borne infections
                                  including non-viraemic transmission,
                                  extended feeding and tick aggregation    359--376
        Avinoam Rabinovitch and   
                 Ira Aviram and   
                 Arieh Zaritsky   Bacterial debris --- an ecological
                                  mechanism for coexistence of bacteria
                                  and their viruses  . . . . . . . . . . . 377--383
              Christoph Giersch   Stationary diffusion gradients
                                  associated with photosynthetic carbon
                                  flux --- a study of compartmental versus
                                  diffusion-reaction models  . . . . . . . 385--397
           Johan H. Koeslag and   
             Elmarie Terblanche   Evolution of cooperation: cooperation
                                  defeats defection in the cornfield model 399--410
               N. Rezaei-Ghaleh   Signaling in biological systems:
                                  insights from communication theory . . . 411--412
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 277--412 (7 October
                                  2003)  . . . . . . . . . . . . . . . . . ??

Journal of Theoretical Biology
Volume 224, Number 4, October 21, 2003

                      Anonymous   Author Index for Volume 224  . . . . . . I--II
                      Anonymous   Subject Index for Volume 224 . . . . . . III--VIII
           Chikara Furusawa and   
                Kunihiko Kaneko   Robust development as a consequence of
                                  generated positional information . . . . 413--435
        Stephen J. Van Dien and   
              Victor de Lorenzo   Deciphering environmental signal
                                  integration in $ \sigma 54 $-dependent
                                  promoters with a simple mathematical
                                  model  . . . . . . . . . . . . . . . . . 437--449
                 Hiro-Sato Niwa   Power-law versus exponential
                                  distributions of animal group sizes  . . 451--457
                Olivier Cinquin   Is the somitogenesis clock really
                                  cell-autonomous? A coupled-oscillator
                                  model of segmentation  . . . . . . . . . 459--468
                   Jan Tullberg   Rationality and social behavior  . . . . 469--478
       Sönke Hardersen and   
                 Chris Frampton   The influence of differential survival
                                  on the distribution of fluctuating
                                  asymmetry --- a modelling approach . . . 479--482
               Simcha Lev-Yadun   Why do some thorny plants resemble green
                                  zebras?  . . . . . . . . . . . . . . . . 483--489
                Marko Marhl and   
                Stefan Schuster   Under what conditions signal
                                  transduction pathways are highly
                                  flexible in response to external
                                  forcing? A case study on calcium
                                  oscillations . . . . . . . . . . . . . . 491--500
               R. R. Sarkar and   
              J. Chattopadhayay   Occurrence of planktonic blooms under
                                  environmental fluctuations and its
                                  possible control mechanism-mathematical
                                  models and experimental observations . . 501--516
       Lucas Sánchez and   
                 Denis Thieffry   Segmenting the fly embryo: a logical
                                  analysis of the pair-rule
                                  cross-regulatory module  . . . . . . . . 517--537
                  T. Kirner and   
                   J. Ackermann   Pattern selection in a cooperative
                                  biochemical in vitro amplification
                                  system: the role of parasites  . . . . . 539--549
            V. B. Kokshenev and   
             J. K. L. Silva and   
                G. J. M. Garcia   Long-bone allometry of terrestrial
                                  mammals and the geometric-shape and
                                  elastic-force constraints of bone
                                  evolution  . . . . . . . . . . . . . . . 551--556
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 413--556 (21 October
                                  2003)  . . . . . . . . . . . . . . . . . ??


Journal of Theoretical Biology
Volume 225, Number 1, November 7, 2003

             Shizuka Minami and   
                    Akira Azuma   Various flying modes of wind-dispersal
                                  seeds  . . . . . . . . . . . . . . . . . 1--14
                   Scott Hotton   Finding the center of a phyllotactic
                                  pattern  . . . . . . . . . . . . . . . . 15--32
              Danuta Wlodek and   
               Michael Gonzales   Decreased energy levels can cause and
                                  sustain obesity  . . . . . . . . . . . . 33--44
                 Andreas Wagner   Risk management in biological evolution  45--57
            Rinaldo B. Schinazi   On the role of reinfection in the
                                  transmission of infectious diseases  . . 59--63
                  D. Taylor and   
            J. G. Hazenberg and   
                      T. C. Lee   The cellular transducer in
                                  damage-stimulated bone remodelling: a
                                  theoretical investigation using fracture
                                  mechanics  . . . . . . . . . . . . . . . 65--75
               Patsy Haccou and   
            Olivier Glaizot and   
                 Chris Cannings   Patch leaving strategies and
                                  superparasitism: an asymmetric
                                  generalized war of attrition . . . . . . 77--89
             Atsushi Komoto and   
            Ken-ichi Hanaki and   
           Shinya Maenosono and   
        Joe Yuichiro Wakano and   
            Yukio Yamaguchi and   
                 Kenji Yamamoto   Growth dynamics of Bacillus circulans
                                  colony . . . . . . . . . . . . . . . . . 91--97
           Karsten Brensing and   
               Katrin Linke and   
                   Dietmar Todt   Can dolphins heal by ultrasound? . . . . 99--105
          Kalet León and   
               Agustin Lage and   
                 Jorge Carneiro   Tolerance and immunity in a mathematical
                                  model of T-cell mediated suppression . . 107--126
            Ole Lajord Munk and   
            Susanne Keiding and   
                    Ludvik Bass   Capillaries within compartments:
                                  microvascular interpretation of dynamic
                                  positron emission tomography data  . . . 127--141
           Harvey J. Kliman and   
                      Lee Segel   The placenta may predict the baby  . . . 143--145
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--146 (7 November 2003) . . . . . ??

Journal of Theoretical Biology
Volume 225, Number 2, November 21, 2003

             Caterina Guiot and   
    Piero Giorgio Degiorgis and   
        Pier Paolo Delsanto and   
            Pietro Gabriele and   
            Thomas S. Deisboeck   Does tumor growth follow a ``universal
                                  law''? . . . . . . . . . . . . . . . . . 147--151
                 A. Golubev and   
              S. Khrustalev and   
                       A. Butov   An in silico investigation into the
                                  causes of telomere length heterogeneity
                                  and its implications for the Hayflick
                                  limit  . . . . . . . . . . . . . . . . . 153--170
                 V. Goltsev and   
               I. Zaharieva and   
                 P. Lambrev and   
                I. Yordanov and   
                    R. Strasser   Simultaneous analysis of prompt and
                                  delayed chlorophyll a fluorescence in
                                  leaves during the induction period of
                                  dark to light adaptation . . . . . . . . 171--183
            Nathan D. Price and   
           Jennifer L. Reed and   
             Jason A. Papin and   
           Sharon J. Wiback and   
            Bernhard O. Palsson   Network-based analysis of metabolic
                                  regulation in the human red blood cell   185--194
                 R. B. Campbell   A logistic branching process for
                                  population genetics  . . . . . . . . . . 195--203
            Joshua S. Weitz and   
              Daniel H. Rothman   Scale-dependence of
                                  resource-biodiversity relationships  . . 205--214
                Takuyo Aita and   
                  Yuzuru Husimi   Thermodynamical interpretation of an
                                  adaptive walk on a Mt. Fuji-type fitness
                                  landscape: Einstein relation-like
                                  formula holds in a stochastic evolution  215--228
                 Fanyi Shen and   
                  Liu Wenji and   
                 Gao Rongfu and   
                         Huo Hu   A careful physical analysis of gas
                                  bubble dynamics in xylem . . . . . . . . 229--233
                 Simon Benhamou   Bicoordinate navigation based on
                                  non-orthogonal gradient fields . . . . . 235--239
             Christine Loos and   
               Ralf Seppelt and   
          Sara Meier-Bethke and   
          Joachim Schiemann and   
                   Otto Richter   Spatially explicit modelling of
                                  transgenic maize pollen dispersal and
                                  cross-pollination  . . . . . . . . . . . 241--255
          T. Alarcón and   
                H. M. Byrne and   
                    P. K. Maini   A cellular automaton model for tumour
                                  growth in inhomogeneous environment  . . 257--274
         Sergei S. Pilyugin and   
          Vitaly V. Ganusov and   
        Kaja Murali-Krishna and   
                 Rafi Ahmed and   
                   Rustom Antia   The rescaling method for quantifying the
                                  turnover of cell populations . . . . . . 275--283
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 147--284 (21 November 2003)  . . . ??

Journal of Theoretical Biology
Volume 225, Number 3, December 7, 2003

             Michael A. Fishman   Indirect reciprocity among imperfect
                                  individuals  . . . . . . . . . . . . . . 285--292
         Nils Blüthgen and   
               Hanspeter Herzel   How robust are switches in intracellular
                                  signaling cascades?  . . . . . . . . . . 293--300
           Y. Guédon and   
                  P. Heuret and   
                      E. Costes   Comparison methods for branching and
                                  axillary flowering sequences . . . . . . 301--325
           Kevin J. Painter and   
           Jonathan A. Sherratt   Modelling the movement of interacting
                                  cell populations . . . . . . . . . . . . 327--339
                        Y. Katz   Solubility, adsorption, and the
                                  thermodynamics of the cutoff effect  . . 341--349
Raúl Cañas C. and   
          Roberto A. Quiroz and   
 Carlos León-Velarde and   
             Adolfo Posadas and   
                  Javier Osorio   Quantifying energy dissipation by
                                  grazing animals in harsh environments    351--359
            Tracey H. Joffe and   
            Timothy J. Cole and   
       Jonathan C. K. Wells and   
           Michael P. Geary and   
          Charles H. Rodeck and   
             Peter C. Hindmarsh   A new method for quantifying
                                  encephalization in the growing
                                  individual . . . . . . . . . . . . . . . 361--367
                    Xinyi Huang   Equilibrium competition binding assay:
                                  inhibition mechanism from a single dose
                                  response . . . . . . . . . . . . . . . . 369--376
           Franziska Michor and   
            Steven A. Frank and   
              Robert M. May and   
                  Yoh Iwasa and   
                Martin A. Nowak   Somatic selection for and against cancer 377--382
                  Robert Dorazi   Can tRNAs act as antisense RNA? The case
                                  of mutA and dnaQ . . . . . . . . . . . . 383--388
                   Lars Witting   Major life-history transitions by
                                  deterministic directional natural
                                  selection  . . . . . . . . . . . . . . . 389--406
                       M. Zamir   Critique of the test of multifractality
                                  as applied to biological data  . . . . . 407--412
               Shoji Mizuno and   
                   Akiko Mizuno   Theoretical examination of the standing
                                  osmotic gradient response to a step
                                  change of the solute influx into the
                                  symplast . . . . . . . . . . . . . . . . 413--417
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 285--418 (7 December 2003) . . . . ??

Journal of Theoretical Biology
Volume 225, Number 4, December 21, 2003

               Steven Riley and   
        Christl A. Donnelly and   
               Neil M. Ferguson   Robust parameter estimation techniques
                                  for stochastic within-host macroparasite
                                  models . . . . . . . . . . . . . . . . . 419--430
            Andrei Borodich and   
         Igor Rojdestvenski and   
             Michael Cottam and   
               Jan Anderson and   
             Gunnar Öquist   Segregation of the photosystems in
                                  higher plant thylakoids and short- and
                                  long-term regulation by a mesoscopic
                                  approach . . . . . . . . . . . . . . . . 431--441
       Raphaël Jeanson and   
     Stéphane Blanco and   
           Richard Fournier and   
      Jean-Louis Deneubourg and   
  Vincent Fourcassié and   
                  Guy Theraulaz   A model of animal movements in a bounded
                                  space  . . . . . . . . . . . . . . . . . 443--451
                  Michio Kondoh   Habitat fragmentation resulting in
                                  overgrazing by herbivores  . . . . . . . 453--460
           Thomas MacCarthy and   
             Robert Seymour and   
            Andrew Pomiankowski   The evolutionary potential of the
                                  Drosophila sex determination gene
                                  network  . . . . . . . . . . . . . . . . 461--468
   Beatriz Ruiz-Díez and   
    Patricia Sánchez and   
           Fernando Baquero and   
José L. Martínez and   
                  Alfonso Navas   Differential interactions within the
                                  \bionameCaenorhabditis
                                  elegans--\bionamePseudomonas aeruginosa
                                  pathogenesis model . . . . . . . . . . . 469--476
           Mark A. Peletier and   
         Hans V. Westerhoff and   
            Boris N. Kholodenko   Control of spatially heterogeneous and
                                  time-varying cellular reaction networks:
                                  a new summation law  . . . . . . . . . . 477--487
            Vladimir P. Zhdanov   Propagation of infection and the
                                  prey-predator interplay  . . . . . . . . 489--492
        Avinoam Rabinovitch and   
             Arieh Zaritsky and   
                 Mario Feingold   DNA-membrane interactions can localize
                                  bacterial cell center  . . . . . . . . . 493--496
        Susanna C. Manrubia and   
       María Arribas and   
            Ester Lázaro   Supercritical branching processes and
                                  the role of fluctuations under
                                  exponential population growth  . . . . . 497--505
                 Tadashi Masuda   An electromechanical model of myosin
                                  molecular motors . . . . . . . . . . . . 507--515
María S. Sánchez and   
                  Alan Hastings   Uniform vertical transmission and
                                  selection in a host-symbiont system.
                                  Non-random symbiont distribution
                                  generates apparent differential
                                  selection  . . . . . . . . . . . . . . . 517--530
                      Nick Lane   A unifying view of ageing and disease:
                                  the double-agent theory  . . . . . . . . 531--540
   Dalila Laoudj-Chenivesse and   
         René Bennes and   
         Emmanuel Tronel-Peyroz   On the flexibility and the dynamics of
                                  DNA  . . . . . . . . . . . . . . . . . . 541--543
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 419--544 (21 December 2003)  . . . ??


Journal of Theoretical Biology
Volume 226, Number 1, January 7, 2004

                  E. T. Bucovaz   A proposed mechanism which may explain
                                  why the fetus is not considered to be
                                  foreign tissue by the maternal system
                                  during pregnancy . . . . . . . . . . . . 1--8
             Eric Beno\^\it and   
       Marie-Joëlle Rochet   A continuous model of biomass size
                                  spectra governed by predation and the
                                  effects of fishing on them . . . . . . . 9--21
    Carolin Banasek-Richter and   
        Marie-France Cattin and   
     Louis-Félix Bersier   Sampling effects and the robustness of
                                  quantitative and qualitative food-web
                                  descriptors  . . . . . . . . . . . . . . 23--32
            Michael C. Reed and   
        H. Frederik Nijhout and   
              Rachel Sparks and   
             Cornelia M. Ulrich   A mathematical model of the methionine
                                  cycle  . . . . . . . . . . . . . . . . . 33--43
              Marcio R. Pie and   
        Rebeca B. Rosengaus and   
          James F. A. Traniello   Nest architecture, activity pattern,
                                  worker density and the dynamics of
                                  disease transmission in social insects   45--51
          N. J. B. Driessen and   
                  W. Wilson and   
            C. V. C. Bouten and   
              F. P. T. Baaijens   A computational model for collagen fibre
                                  remodelling in the arterial wall . . . . 53--64
            John T. Hancock and   
            Radhika Desikan and   
            Steven J. Neill and   
                Andrew R. Cross   New equations for redox and nano-signal
                                  transduction . . . . . . . . . . . . . . 65--68
            Joe Yuichiro Wakano   Drastic growth effect may explain
                                  sympatric cannibalistic polymorphism . . 69--77
            Kinya Nishimura and   
                   Yutaka Isoda   Variant evolutionary trees under
                                  phenotypic variance  . . . . . . . . . . 79--87
              Massimo Di Giulio   The origin of the tRNA molecule:
                                  implications for the origin of protein
                                  synthesis  . . . . . . . . . . . . . . . 89--93
          Narendra M. Dixit and   
               Alan S. Perelson   Complex patterns of viral load decay
                                  under antiretroviral therapy: influence
                                  of pharmacokinetics and intracellular
                                  delay  . . . . . . . . . . . . . . . . . 95--109
            Jason R. Pirone and   
              Timothy C. Elston   Fluctuations in transcription factor
                                  binding can explain the graded and
                                  binary responses observed in inducible
                                  gene expression  . . . . . . . . . . . . 111--121
           Gennady Bocharov and   
             Paul Klenerman and   
                    Stephan Ehl   Erratum to ``Modelling the dynamics of
                                  LCMV infection in mice: II.
                                  Compartmental structure and
                                  immunopathology'': [J. Theor. Biol. \bf
                                  221, 349--378] . . . . . . . . . . . . . 123--123
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--124 (7 January 2004)  . . . . . ??

Journal of Theoretical Biology
Volume 226, Number 2, January 21, 2004

            J. A. N. Filipe and   
                    M. M. Maule   Effects of dispersal mechanisms on
                                  spatio-temporal development of epidemics 125--141
          Gregory T. Reeves and   
                Atul Narang and   
             Sergei S. Pilyugin   Growth of mixed cultures on mixtures of
                                  substitutable substrates: the operating
                                  diagram for a structured model . . . . . 143--157
           Priyanga Amarasekare   The role of density-dependent dispersal
                                  in source-sink dynamics  . . . . . . . . 159--168
            Igor A. Sidorov and   
                 Dennis Gee and   
            Dimiter S. Dimitrov   A kinetic model of telomere shortening
                                  in infants and adults  . . . . . . . . . 169--175
             Narayan Behera and   
           Vidyanand Nanjundiah   Phenotypic plasticity can potentiate
                                  rapid evolutionary change  . . . . . . . 177--184
           Hiroshi Hakoyama and   
                      Yoh Iwasa   Coexistence of a sexual and an unisexual
                                  form stabilized by parasites . . . . . . 185--194
   Boris P. Belotserkovskii and   
               David A. Zarling   Analysis of a one-dimensional random
                                  walk with irreversible losses at each
                                  step: applications for protein movement
                                  on DNA . . . . . . . . . . . . . . . . . 195--203
                  Yoh Iwasa and   
           Franziska Michor and   
                Martin A. Nowak   Evolutionary dynamics of invasion and
                                  escape . . . . . . . . . . . . . . . . . 205--214
               Tamiki Umeda and   
                     Kei Inouye   Cell sorting by differential cell
                                  motility: a model for pattern formation
                                  in \bionameDictyostelium . . . . . . . . 215--224
               Akiko Satake and   
                  Yoh Iwasa and   
           Hiroshi Hakoyama and   
             Stephen P. Hubbell   Estimating local interaction from
                                  spatiotemporal forest data, and Monte
                                  Carlo bias correction  . . . . . . . . . 225--235
                 Huilian Ma and   
           Richard B. Dickinson   Kinetic analysis of the attachment of a
                                  biological particle to a surface by
                                  macromolecular binding . . . . . . . . . 237--250
                      Anonymous   Announcement: Matabolic Engineering V:
                                  Genome to product  . . . . . . . . . . . 251--251
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 125--252 (21 January 2004) . . . . ??

Journal of Theoretical Biology
Volume 226, Number 3, February 7, 2004

               Satoki Sakai and   
                 Yasushi Harada   Size-number trade-off and optimal
                                  offspring size for offspring produced
                                  sequentially using a fixed amount of
                                  reserves . . . . . . . . . . . . . . . . 253--264
   Fernando Alvarez-Vasquez and   
             Kellie J. Sims and   
            Yusuf A. Hannun and   
               Eberhard O. Voit   Integration of kinetic information on
                                  yeast sphingolipid metabolism in
                                  dynamical pathway models . . . . . . . . 265--291
            Kinya Nishimura and   
                   Yutaka Isoda   Evolution of cannibalism: referring to
                                  costs of cannibalism . . . . . . . . . . 293--302
             A. R. Tzafriri and   
                  E. R. Edelman   The total quasi-steady-state
                                  approximation is valid for reversible
                                  enzyme kinetics  . . . . . . . . . . . . 303--313
           Leonardo P. Maia and   
           Alexandre Colato and   
       José F. Fontanari   Effect of selection on the topology of
                                  genealogical trees . . . . . . . . . . . 315--320
               D. P. Wilson and   
              D. L. S. McElwain   A model of neutralization of Chlamydia
                                  trachomatis based on antibody and host
                                  cell aggregation on the elementary body
                                  surface  . . . . . . . . . . . . . . . . 321--330
              Melissa D. Ho and   
          Bryan C. McCannon and   
              Jonathan P. Lynch   Optimization modeling of plant root
                                  architecture for water and phosphorus
                                  acquisition  . . . . . . . . . . . . . . 331--340
                  Zu-Guo Yu and   
                     Vo Anh and   
                    Ka-Sing Lau   Chaos game representation of protein
                                  sequences based on the detailed HP model
                                  and their multifractal and correlation
                                  analyses . . . . . . . . . . . . . . . . 341--348
             Ford Ballantyne IV   The relative importance of herbivory and
                                  carnivory on the distribution of energy
                                  in a stochastic tri-trophic food web . . 349--357
              M. R. Bennett and   
                 L. Farnell and   
               W. G. Gibson and   
                       D. Blair   A quantitative description of the
                                  diffusion of noradrenaline in the media
                                  of blood vessels following its release
                                  from sympathetic varicosities  . . . . . 359--372
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 253--372 (7 February 2004) . . . . ??

Journal of Theoretical Biology
Volume 226, Number 4, February 21, 2004

                      Anonymous   Author index for volume 226  . . . . . . I--II
                      Anonymous   Subject index for volume 226 . . . . . . III--VII
                Yu-Dong Cai and   
          Pong-Wong Ricardo and   
              Chih-Hung Jen and   
                  Kuo-Chen Chou   Application of SVM to predict membrane
                                  protein types  . . . . . . . . . . . . . 373--376
             Markus R. Owen and   
             Helen M. Byrne and   
                Claire E. Lewis   Mathematical modelling of the use of
                                  macrophages as vehicles for drug
                                  delivery to hypoxic tumour sites . . . . 377--391
         David A. McClellan and   
           David G. Whiting and   
           Ryan Christensen and   
               Joshua Sailsbery   Genetic codes as evolutionary filters:
                                  subtle differences in the structure of
                                  genetic codes result in significant
                                  differences in patterns of nucleotide
                                  substitution . . . . . . . . . . . . . . 393--400
              Erik M. Rauch and   
               Mark M. Millonas   The role of trans-membrane signal
                                  transduction in turing-type cellular
                                  pattern formation  . . . . . . . . . . . 401--407
             Nitesh Nalwaya and   
                William M. Deen   Analysis of the effects of nitric oxide
                                  and oxygen on nitric oxide production by
                                  macrophages  . . . . . . . . . . . . . . 409--419
             Norio Yamamura and   
           Masahiko Higashi and   
             Narayan Behera and   
            Joe Yuichiro Wakano   Evolution of mutualism through spatial
                                  effects  . . . . . . . . . . . . . . . . 421--428
        András Barta and   
    Gábor Horváth   Why is it advantageous for animals to
                                  detect celestial polarization in the
                                  ultraviolet? Skylight polarization under
                                  clouds and canopies is strongest in the
                                  UV . . . . . . . . . . . . . . . . . . . 429--437
                Hisao Honda and   
          Masaharu Tanemura and   
                  Tatsuzo Nagai   A three-dimensional vertex dynamics cell
                                  model of space-filling polyhedra
                                  simulating cell behavior in a cell
                                  aggregate  . . . . . . . . . . . . . . . 439--453
                  A. Sarkar and   
                   B. R. Franza   A logical analysis of the process of T
                                  cell activation: different consequences
                                  depending on the state of CD28
                                  engagement . . . . . . . . . . . . . . . 455--466
          Manfred Hühn and   
              Hans-Peter Piepho   Inbreeding coefficients for
                                  stochastically varying small population
                                  sizes-bias of calculation based on
                                  effective numbers  . . . . . . . . . . . 467--475
                     R. Twarock   A tiling approach to virus capsid
                                  assembly explaining a structural puzzle
                                  in virology  . . . . . . . . . . . . . . 477--482
                Jacques Thierie   Modeling threshold phenomena, metabolic
                                  pathways switches and signals in
                                  chemostat-cultivated cells: the Crabtree
                                  effect in Saccharomyces cerevisiae . . . 483--501
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 373--502 (21 February
                                  2004)  . . . . . . . . . . . . . . . . . ??


Journal of Theoretical Biology
Volume 227, Number 1, March 7, 2004

            Richard J. Weld and   
            Christine Butts and   
              Jack A. Heinemann   Models of phage growth and their
                                  applicability to phage therapy . . . . . 1--11
            Dylan Z. Childs and   
         Michael B. Bonsall and   
                      Mark Rees   Periodic local disturbance in
                                  host-parasitoid metapopulations: host
                                  suppression and parasitoid persistence   13--23
               Tim Guilford and   
            Stephen Roberts and   
                  Dora Biro and   
                     Iead Rezek   Positional entropy during pigeon homing
                                  II: navigational interpretation of
                                  Bayesian latent state models . . . . . . 25--38
            Stephen Roberts and   
               Tim Guilford and   
                 Iead Rezek and   
                      Dora Biro   Positional entropy during pigeon homing
                                  I: application of Bayesian latent state
                                  modelling  . . . . . . . . . . . . . . . 39--50
                   Alan H. Bond   An information-processing analysis of
                                  the functional architecture of the
                                  primate neocortex  . . . . . . . . . . . 51--79
                   Alan H. Bond   A computational model for the primate
                                  neocortex based on its functional
                                  architecture . . . . . . . . . . . . . . 81--102
               Patrick Namy and   
             Jacques Ohayon and   
               Philippe Tracqui   Critical conditions for pattern
                                  formation and in vitro tubulogenesis
                                  driven by cellular traction fields . . . 103--120
                  G. J. Ackland   Maximization principles and daisyworld   121--128
    S. G. Fungairiño and   
            F. López and   
              J. M. Serrano and   
               F. J. Acosta and   
                P. de las Heras   Structural cost of shoot modules and its
                                  implications on plant potential fitness
                                  in a Mediterranean perennial shrub,
                                  Retama sphaerocarpa (L.) Boiss . . . . . 129--136
                C. Fleurant and   
                J. Duchesne and   
                   P. Raimbault   An allometric model for trees  . . . . . 137--147
                   R. Serra and   
                 M. Villani and   
                     A. Semeria   Genetic network models and statistical
                                  properties of gene expression data in
                                  knock-out experiments  . . . . . . . . . 149--157
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 1--158 (7 March 2004)    ??

Journal of Theoretical Biology
Volume 227, Number 2, March 21, 2004

               M. A. Hurley and   
             P. Matthiessen and   
                A. D. Pickering   A model for environmental sex reversal
                                  in fish  . . . . . . . . . . . . . . . . 159--165
           Vlastimil Krivan and   
                      Ivo Vrkoc   Should ``handled'' prey be considered?
                                  Some consequences for functional
                                  response, predator-prey dynamics and
                                  optimal foraging theory  . . . . . . . . 167--174
              David D'Haese and   
        Karine Vandermeiren and   
     Roland Julien Caubergs and   
                Yves Guisez and   
        Ludwig De Temmerman and   
                  Nele Horemans   Non-photochemical quenching kinetics
                                  during the dark to light transition in
                                  relation to the formation of
                                  antheraxanthin and zeaxanthin  . . . . . 175--186
          Peter L. Davidson and   
           Peter D. Milburn and   
                Barry D. Wilson   Biological adaptive control model: a
                                  mechanical analogue of multi-factorial
                                  bone density adaptation  . . . . . . . . 187--195
             Christian Damgaard   Dynamics in a discrete two-species
                                  competition model: coexistence and
                                  over-compensation  . . . . . . . . . . . 197--203
       Jean-Olivier Irisson and   
              Anselme LeVan and   
             Michel De Lara and   
                   Serge Planes   Strategies and trajectories of coral
                                  reef fish larvae optimizing
                                  self-recruitment . . . . . . . . . . . . 205--218
              Lawrence M. Agius   A primary dysregulation in the
                                  immunoregulatory role of the intestinal
                                  mucosal epithelial cell in inflammatory
                                  bowel disease pathogenesis?: Biology of
                                  inflammatory response as tissue pattern
                                  entities in Crohn's versus ulcerative
                                  colitis  . . . . . . . . . . . . . . . . 219--228
               Tianhai Tian and   
                  Kevin Burrage   Bistability and switching in the
                                  lysis/lysogeny genetic regulatory
                                  network of bacteriophage $ \lambda $ . . 229--237
       Manoj Gopalakrishnan and   
  Kimberly Forsten-Williams and   
             Uwe C. Täuber   Ligand-induced coupling versus receptor
                                  pre-association: cellular automaton
                                  simulations of FGF-2 binding . . . . . . 239--251
       Tatiana V. Karpinets and   
                   Brent D. Foy   Model of the developing tumorigenic
                                  phenotype in mammalian cells and the
                                  roles of sustained stress and
                                  replicative senescence . . . . . . . . . 253--264
                 Toshihiko Sato   Size-dependent sex allocation in
                                  hermaphroditic plants: the effects of
                                  resource pool and self-incompatibility   265--275
           Ian D. Rozdilsky and   
                 Lewi Stone and   
                   Andrew Solow   The effects of interaction compartments
                                  on stability for competitive systems . . 277--282
             Jason A. Papin and   
            Bernhard O. Palsson   Topological analysis of mass-balanced
                                  signaling networks: a framework to
                                  obtain network properties including
                                  crosstalk  . . . . . . . . . . . . . . . 283--297
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 159--298 (21 March 2004) . . . . . ??

Journal of Theoretical Biology
Volume 227, Number 3, April 7, 2004

                Hisashi Ohtsuki   Reactive strategies in indirect
                                  reciprocity  . . . . . . . . . . . . . . 299--314
           Warren F. Lamboy and   
       Gabriel Moreno-Hagelsieb   A new method of solution for the
                                  occupancy problem and its application to
                                  operon size prediction . . . . . . . . . 315--322
                Michael R. King   Apparent $2$-D diffusivity in a ruffled
                                  cell membrane  . . . . . . . . . . . . . 323--326
                    K. Arii and   
                     L. Parrott   Emergence of non-random structure in
                                  local food webs generated from randomly
                                  structured regional webs . . . . . . . . 327--333
        Harold P. de Vladar and   
       Jorge A. González   Dynamic response of cancer under the
                                  influence of immunological activity and
                                  therapy  . . . . . . . . . . . . . . . . 335--348
                Thilo Gross and   
      Wolfgang Ebenhöh and   
                  Ulrike Feudel   Enrichment and foodchain stability: the
                                  impact of different forms of
                                  predator-prey interaction  . . . . . . . 349--358
         Jonathan B. Shurin and   
       Priyanga Amarasekare and   
          Jonathan M. Chase and   
             Robert D. Holt and   
           Martha F. Hoopes and   
              Mathew A. Leibold   Alternative stable states and regional
                                  community structure  . . . . . . . . . . 359--368
                 Wendi Wang and   
                    Shigui Ruan   Simulating the SARS outbreak in Beijing
                                  with limited data  . . . . . . . . . . . 369--379
               Jean Lehmann and   
                Bruno Riedo and   
               Giovanni Dietler   Folding of small RNAs displaying the GNC
                                  base-pattern: implications for the
                                  self-organization of the genetic system  381--395
                Daniel B. Neill   Evolutionary stability for large
                                  populations  . . . . . . . . . . . . . . 397--401
             Dominik Wodarz and   
                   Akira Sasaki   Apparent competition and recovery from
                                  infection  . . . . . . . . . . . . . . . 403--412
            Madalena Chaves and   
          Eduardo D. Sontag and   
           Robert J. Dinerstein   Steady-states of receptor-ligand
                                  dynamics: a theoretical framework  . . . 413--428
          A. Krishnamachari and   
          Vijnan moy Mandal and   
                       Karmeshu   Study of DNA binding sites using the
                                  Rényi parametric entropy measure  . . . . 429--436
                T. I. Zohdi and   
            G. A. Holzapfel and   
                   S. A. Berger   A phenomenological model for
                                  atherosclerotic plaque growth and
                                  rupture  . . . . . . . . . . . . . . . . 437--443
            R. M. Ranganath and   
             R. Nijagunaiah and   
                  G. Shubhakara   Meiosis-II and mitosis have different
                                  molecular formats  . . . . . . . . . . . 445--447
                      Anonymous   Announcement . . . . . . . . . . . . . . 449--449
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 299--450 (7 April 2004)  . . . . . ??

Journal of Theoretical Biology
Volume 227, Number 4, April 21, 2004

                Wim Hordijk and   
                     Mike Steel   Detecting autocatalytic, self-sustaining
                                  sets in chemical reaction systems  . . . 451--461
             Simeone Marino and   
            Denise E. Kirschner   The human immune response to
                                  Mycobacterium tuberculosis in lung and
                                  lymph node . . . . . . . . . . . . . . . 463--486
                 Eva Skubic and   
           Michael Taborsky and   
           John M. McNamara and   
            Alasdair I. Houston   When to parasitize? A dynamic
                                  optimization model of reproductive
                                  strategies in a cooperative breeder  . . 487--501
            Matthew Spencer and   
      Elizabeth A. Davidson and   
         Adrian C. Barbrook and   
            Christopher J. Howe   Phylogenetics of artificial manuscripts  503--511
                Helen Moore and   
                  Natasha K. Li   A mathematical model for chronic
                                  myelogenous leukemia (CML) and T cell
                                  interaction  . . . . . . . . . . . . . . 513--523
                  Van M. Savage   Improved approximations to scaling
                                  relationships for species, populations,
                                  and ecosystems across latitudinal and
                                  elevational gradients  . . . . . . . . . 525--534
       Gábor Domokos and   
        István Scheuring   Discrete and continuous state population
                                  models in a noisy world  . . . . . . . . 535--545
               N. B. Grover and   
              E. Eidelstein and   
                L. J. H. Koppes   Bacterial shape maintenance: an
                                  evaluation of various models . . . . . . 547--559
                Olof Leimar and   
       Tom J. M. Van Dooren and   
              Peter Hammerstein   Adaptation and constraint in the
                                  evolution of environmental sex
                                  determination  . . . . . . . . . . . . . 561--570
              Roberto Refinetti   Non-stationary time series and the
                                  robustness of circadian rhythms  . . . . 571--581
                   Uri Nevo and   
                Ido Golding and   
          Avidan U. Neumann and   
           Micha\l Schwartz and   
               Solange Akselrod   Autoimmunity as an immune defense
                                  against degenerative processes: a
                                  primary mathematical model illustrating
                                  the bright side of autoimmunity  . . . . 583--592
      Jeffrey P. Lorberbaum and   
           W. Reynolds Williams   Erratum to ``Are there really no
                                  evolutionarily stable strategies in the
                                  iterated prisoner's dilemma?'': [J.
                                  Theor. Biol. \bf 214, 155--169]  . . . . 593--593
                      Anonymous   Author Index to volume 227 . . . . . . . 595--596
                      Anonymous   Subject Index to volume 227  . . . . . . 597--602
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 451--602 (21 April 2004) . . . . . ??


Journal of Theoretical Biology
Volume 228, Number 1, May 7, 2004

              William. H. James   Hypotheses on how selection for some
                                  traits in rodents led to correlated
                                  responses in offspring sex ratios  . . . 1--6
                   Hai-Chao Han   An echocardiogram-based $ 16$-segment
                                  model for predicting left ventricular
                                  ejection fraction improvement  . . . . . 7--15
                  Emi Shudo and   
                      Yoh Iwasa   Dynamic optimization of host defense,
                                  immune memory, and post-infection
                                  pathogen levels in mammals . . . . . . . 17--29
                  John Aach and   
               George M. Church   Mathematical models of
                                  diffusion-constrained polymerase chain
                                  reactions: basis of high-throughput
                                  nucleic acid assays and simple
                                  self-organizing systems  . . . . . . . . 31--46
      Ricard V. Solé and   
            Thomas S. Deisboeck   An error catastrophe in cancer?  . . . . 47--54
              Ian M. Joseph and   
               Denise Kirschner   A model for the study of Helicobacter
                                  pylori interaction with human gastric
                                  acid secretion . . . . . . . . . . . . . 55--80
            Martin J. Allan and   
              Robin Callard and   
             Jaroslav Stark and   
                   Andrew Yates   Comparing antigen-independent mechanisms
                                  of T cell regulation . . . . . . . . . . 81--95
             Carolin Kosiol and   
               Nick Goldman and   
             Nigel H. Buttimore   A new criterion and method for amino
                                  acid classification  . . . . . . . . . . 97--106
                   R. James and   
              P. G. Bennett and   
                      J. Krause   Geometry for mutualistic and selfish
                                  herds: the limited domain of danger  . . 107--113
                Peter Giesl and   
            Dorothea Meisel and   
       Jürgen Scheurle and   
                   Heiko Wagner   Stability analysis of the elbow with a
                                  load . . . . . . . . . . . . . . . . . . 115--125
                    Kenny Smith   The evolution of vocabulary  . . . . . . 127--142
             Samuel Bernard and   
      Jacques Bélair and   
              Micahel C. Mackey   Erratum to ``Oscillations in cyclical
                                  neutropenia: new evidence based on
                                  mathematical modeling'': [J. Theor.
                                  Biol. \bf 223, 283--298] . . . . . . . . 143--143
               Tamiki Umeda and   
                     Kei Inouye   Erratum to ``Cell sorting by
                                  differential motility: a model for
                                  pattern formation in
                                  \bionameDictyostelium'': [J.Theor. Biol.
                                  \bf 226 (2004) 215--224] . . . . . . . . 145--146
                Hisao Honda and   
          Masaharu Tanemura and   
                  Tatsuzo Nagai   Erratum to ``A three-dimensional vertex
                                  dynamics cell model of space-filling
                                  polyhedra simulating cell behavior in a
                                  cell aggregate'': [J. Theor. Biol. \bf
                                  226 (2004) 439--453] . . . . . . . . . . 147--147
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--148 (7 May 2004)  . . . . . . . ??

Journal of Theoretical Biology
Volume 228, Number 2, May 21, 2004

               Pekka Kaitaniemi   Testing the allometric scaling laws  . . 149--153
                   T. Roose and   
                   A. C. Fowler   A model for water uptake by plant roots  155--171
                   T. Roose and   
                   A. C. Fowler   A mathematical model for water and
                                  nutrient uptake by plant root systems    173--184
                Yinglei Lai and   
                    Fengzhu Sun   Sampling distribution for
                                  microsatellites amplified by PCR: mean
                                  field approximation and its applications
                                  to genotyping  . . . . . . . . . . . . . 185--194
           Tomasz Lipniacki and   
              Pawe\l Paszek and   
           Allan R. Brasier and   
                Bruce Luxon and   
                   Marek Kimmel   Mathematical model of NF-$ \kappa $B
                                  regulatory module  . . . . . . . . . . . 195--215
         Thomas N. Sherratt and   
           Michael P. Speed and   
               Graeme D. Ruxton   Natural selection on unpalatable species
                                  imposed by state-dependent foraging
                                  behaviour  . . . . . . . . . . . . . . . 217--226
             Dennis L. Chao and   
         Miles P. Davenport and   
          Stephanie Forrest and   
               Alan S. Perelson   A stochastic model of cytotoxic T cell
                                  responses  . . . . . . . . . . . . . . . 227--240
               Thomas Flatt and   
        István Scheuring   Stabilizing factors interact in
                                  promoting host-parasite coexistence  . . 241--249
            Lorens A. Imhof and   
                  Dale Song and   
                  Weng Kee Wong   Optimal design of experiments with
                                  anticipated pattern of missing
                                  observations . . . . . . . . . . . . . . 251--260
        Stefan A. H. Geritz and   
               Éva Kisdi   On the mechanistic underpinning of
                                  discrete-time population models with
                                  complex dynamics . . . . . . . . . . . . 261--269
              M. D. Hanigan and   
             L. A. Crompton and   
             C. K. Reynolds and   
              D. Wray-Cahen and   
                M. A. Lomax and   
                      J. France   An integrative model of amino acid
                                  metabolism in the liver of the lactating
                                  dairy cow  . . . . . . . . . . . . . . . 271--289
            Kinya Nishimura and   
                   Yutaka Isoda   Erratum to ``Evolution of cannibalism:
                                  referring to costs of cannibalism'': [J.
                                  Theor. Biol. \bf 226, 291--302]  . . . . 291--291
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 149--292 (21 May 2004) . . . . . . ??

Journal of Theoretical Biology
Volume 228, Number 3, June 7, 2004

                    Ralf Steuer   Effects of stochasticity in models of
                                  the cell cycle: from quantized cycle
                                  times to noise-induced oscillations  . . 293--301
        Jeffrey A. Fletcher and   
                   Martin Zwick   Strong altruism can evolve in randomly
                                  formed groups  . . . . . . . . . . . . . 303--313
        Yoshihiro Morishita and   
                Kazuyuki Aihara   Noise-reduction through interaction in
                                  gene expression and biochemical reaction
                                  processes  . . . . . . . . . . . . . . . 315--325
            Daniel A. Beard and   
                Eric Babson and   
              Edward Curtis and   
                      Hong Qian   Thermodynamic constraints for
                                  biochemical networks . . . . . . . . . . 327--333
               R. P. Araujo and   
              D. L. S. McElwain   New insights into vascular collapse and
                                  growth dynamics in solid tumors  . . . . 335--346
                 Hiro-Sato Niwa   Space-irrelevant scaling law for fish
                                  school sizes . . . . . . . . . . . . . . 347--357
                Ursula Mittwoch   The elusive action of sex-determining
                                  genes: mitochondria to the rescue? . . . 359--365
               Alan Roberts and   
                     Lewi Stone   Advantageous indirect interactions in
                                  systems of competition . . . . . . . . . 367--375
                Osnat Yaniv and   
                      Uzi Motro   The parental investment conflict in
                                  continuous time: St. Peter's fish as an
                                  example  . . . . . . . . . . . . . . . . 377--388
              Liron Klipcan and   
                     Mark Safro   Amino acid biogenesis, evolution of the
                                  genetic code and aminoacyl-tRNA
                                  synthetases  . . . . . . . . . . . . . . 389--396
       Hugo A. van den Berg and   
                  David A. Rand   Dynamics of T cell activation threshold
                                  tuning . . . . . . . . . . . . . . . . . 397--416
    Alexander E. Vinogradov and   
              Olga V. Anatskaya   Phenological resonance and quantum life
                                  history  . . . . . . . . . . . . . . . . 417--420
                Jean Maquet and   
       Christophe Letellier and   
                Luis A. Aguirre   Scalar modeling and analysis of a 3D
                                  biochemical reaction model . . . . . . . 421--430
           Graeme D. Ruxton and   
               David C. Houston   Obligate vertebrate scavengers must be
                                  large soaring fliers . . . . . . . . . . 431--436
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 293--436 (7 June 2004) . . . . . . ??

Journal of Theoretical Biology
Volume 228, Number 4, June 21, 2004

           Sharon J. Wiback and   
                Iman Famili and   
        Harvey J. Greenberg and   
     Bernhard Ò. Palsson   Monte Carlo sampling can be used to
                                  determine the size and shape of the
                                  steady-state flux space  . . . . . . . . 437--447
                  Ali Navid and   
              Peter J. Ortoleva   Simulated complex dynamics of glycolysis
                                  in the protozoan parasite Trypanosoma
                                  brucei . . . . . . . . . . . . . . . . . 449--458
           Geoffrey W. Hoffmann   Proteomic analyser with applications to
                                  diagnostics and vaccines . . . . . . . . 459--465
                  Josh E. Baker   Free energy transduction in a chemical
                                  motor model  . . . . . . . . . . . . . . 467--476
             Richard Desper and   
                 Javed Khan and   
     Alejandro A. Schäffer   Tumor classification using phylogenetic
                                  methods on expression data . . . . . . . 477--496
              Kjell Hausken and   
               Jack Hirshleifer   The truthful signalling hypothesis: an
                                  explicit general equilibrium model . . . 497--511
            Keola Wierschem and   
                Richard Bertram   Complex bursting in pancreatic islets: a
                                  potential glycolytic mechanism . . . . . 513--521
           Sandrine Pavoine and   
Anne-Béatrice Dufour and   
                 Daniel Chessel   From dissimilarities among species to
                                  dissimilarities among communities: a
                                  double principal coordinate analysis . . 523--537
       M. Gabriela M. Gomes and   
              Lisa J. White and   
               Graham F. Medley   Infection, reinfection, and vaccination
                                  under suboptimal immune protection:
                                  epidemiological perspectives . . . . . . 539--549
                Yu-dong Cai and   
              Guo-Ping Zhou and   
              Chin-Hung Jen and   
             Shuo-Liang Lin and   
                  Kuo-Chen Chou   Identify catalytic triads of serine
                                  hydrolases by support vector machines    551--557
        Roeland M. H. Merks and   
         Alfons G. Hoekstra and   
           Jaap A. Kaandorp and   
              Peter M. A. Sloot   Polyp oriented modelling of coral growth 559--576
                      Anonymous   Author Index . . . . . . . . . . . . . . EX577--EX578
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX584, 437--576 (21 June
                                  2004)  . . . . . . . . . . . . . . . . . ??
                      Anonymous   Subject Index  . . . . . . . . . . . . . EX579--EX583


Journal of Theoretical Biology
Volume 229, Number 1, July 7, 2004

           Thomas Petermann and   
              Paolo De Los Rios   Cluster approximations for epidemic
                                  processes: a systematic description of
                                  correlations beyond the pair level . . . 1--11
         Bengt Nölting and   
         Dennis Jülich and   
             Winfried Vonau and   
                    Karl Andert   Evolutionary Computer Programming of
                                  Protein Folding and Structure
                                  Predictions  . . . . . . . . . . . . . . 13--18
               Emmanuel Paradis   Can extinction rates be estimated
                                  without fossils? . . . . . . . . . . . . 19--30
                James P. Grover   Predation, competition, and nutrient
                                  recycling: a stoichiometric approach
                                  with multiple nutrients  . . . . . . . . 31--43
             Miguel Arocena and   
                  Luis Acerenza   Necessary conditions for a minimal model
                                  of receptor to show adaptive response
                                  over a wide range of levels of stimulus  45--57
                     L. Tao and   
                   C. Nicholson   Maximum geometrical hindrance to
                                  diffusion in brain extracellular space
                                  surrounding uniformly spaced convex
                                  cells  . . . . . . . . . . . . . . . . . 59--68
             Eric N. Cytrynbaum   Periodic stimulus and the single cardiac
                                  cell-getting more out of 1D maps . . . . 69--83
                J. Krishnan and   
                 P. A. Iglesias   A modeling framework describing the
                                  enzyme regulation of membrane lipids
                                  underlying gradient perception in
                                  Dictyostelium cells  . . . . . . . . . . 85--99
             Stephen Turner and   
       Jonathan A. Sherratt and   
                  David Cameron   Tamoxifen treatment failure in cancer
                                  and the nonlinear dynamics of TGF $
                                  \beta $  . . . . . . . . . . . . . . . . 101--111
                Harry A. Saroff   pH effects on the binding of oxygen to
                                  non-vertebrate monomeric hemoglobins. A
                                  linked function model. . . . . . . . . . 113--118
                 G. Chowell and   
           N. W. Hengartner and   
         C. Castillo-Chavez and   
             P. W. Fenimore and   
                    J. M. Hyman   The basic reproductive number of Ebola
                                  and the effects of public health
                                  measures: the cases of Congo and Uganda  119--126
        Abraham R. Tzafriri and   
                   David Wu and   
              Elazer R. Edelman   Analysis of compartmental models of
                                  ligand-induced endocytosis . . . . . . . 127--138
              Guanq-Qin Guo and   
                Guo-Chang Zheng   Hypotheses for the functions of
                                  intercellular bridges in male germ cell
                                  development and its cellular mechanisms  139--146
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 1--146 (7 July 2004) . . ??

Journal of Theoretical Biology
Volume 229, Number 2, July 21, 2004

                         Yi Tao   Intrinsic and external noise in an
                                  auto-regulatory genetic network  . . . . 147--156
             Peter J. Woolf and   
          Jennifer J. Linderman   An algebra of dimerization and its
                                  implications for G-protein coupled
                                  receptor signaling . . . . . . . . . . . 157--168
               David Taylor and   
                Antoine Tilmans   Stress intensity variations in bone
                                  microcracks during the repair process    169--177
                  Yoh Iwasa and   
           Franziska Michor and   
                   Martin Nowak   Some basic properties of immune
                                  selection  . . . . . . . . . . . . . . . 179--188
         Colin S. Gillespie and   
          Carole J. Proctor and   
            Richard J. Boys and   
           Daryl P. Shanley and   
        Darren J. Wilkinson and   
          Thomas B. L. Kirkwood   A mathematical model of ageing in yeast  189--196
             B. Tom Burnley and   
             Jonathan P. L. Cox   Dynamic polyhedral models of globular
                                  proteins . . . . . . . . . . . . . . . . 197--208
                 Simon Benhamou   How to reliably estimate the tortuosity
                                  of an animal's path: straightness,
                                  sinuosity, or fractal dimension? . . . . 209--220
          Miloje M. Rakocevi\'c   A harmonic structure of the genetic code 221--234
             Jan H. G. Verhagen   Hydrodynamics of burst swimming fish
                                  larvae; a conceptual model approach  . . 235--248
                     Tim Reluga   A two-phase epidemic driven by diffusion 249--261
       Theodoros Kokkorogiannis   Somatic and intramuscular distribution
                                  of muscle spindles and their relation to
                                  muscular angiotypes  . . . . . . . . . . 263--280
       Michael A. Gilchrist and   
              Daniel Coombs and   
               Alan S. Perelson   Optimizing within-host viral fitness:
                                  infected cell lifespan and virion
                                  production rate  . . . . . . . . . . . . 281--288
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 147--288 (21 July 2004)  ??

Journal of Theoretical Biology
Volume 229, Number 3, August 7, 2004

                 Michael Retsky   Letter to the editor . . . . . . . . . . 289--289
                   T. Roose and   
                   A. C. Fowler   Erratum to ``A model for water uptake by
                                  plant roots''  . . . . . . . . . . . . . 291--291
            Vincent Lemaire and   
             Frank L. Tobin and   
           Larry D. Greller and   
             Carolyn R. Cho and   
                  Larry J. Suva   Modeling the interactions between
                                  osteoblast and osteoclast activities in
                                  bone remodeling  . . . . . . . . . . . . 293--309
             Luis E. Flores and   
         Eduardo J. Aguilar and   
          Valmir C. Barbosa and   
Luís Alfredo V. de Carvalho   A graph model for the evolution of
                                  specificity in humoral immunity  . . . . 311--325
                Th. Walther and   
                 H. Reinsch and   
             A. Große and   
               K. Ostermann and   
                 A. Deutsch and   
                       Th. Bley   Mathematical modeling of regulatory
                                  mechanisms in yeast colony development   327--338
              Gilles Bernot and   
            Jean-Paul Comet and   
             Adrien Richard and   
                 Janine Guespin   Application of formal methods to
                                  biological regulatory networks:
                                  extending Thomas' asynchronous logical
                                  approach with temporal logic . . . . . . 339--347
            T. J. Hagenaars and   
             C. A. Donnelly and   
                 N. M. Ferguson   Spatial heterogeneity and the
                                  persistence of infectious diseases . . . 349--359
                 G. N. Amzallag   Adaptive changes in bacteria: a
                                  consequence of nonlinear transitions in
                                  chromosome topology? . . . . . . . . . . 361--369
          Joseph W. Freeman and   
            Frederick H. Silver   Elastic energy storage in unmineralized
                                  and mineralized extracellular matrices
                                  (ECMs): a comparison between molecular
                                  modeling and experimental measurements   371--381
         Michael L. Simpson and   
               Chris D. Cox and   
                 Gary S. Sayler   Frequency domain chemical Langevin
                                  analysis of stochasticity in gene
                                  transcriptional regulation . . . . . . . 383--394
          T. Alarcón and   
                H. M. Byrne and   
                    P. K. Maini   A mathematical model of the effects of
                                  hypoxia on the cell-cycle of normal and
                                  cancer cells . . . . . . . . . . . . . . 395--411
                 E. L. Bain and   
               A. J. Millar and   
                   M. S. Turner   The wild-type circadian period of
                                  Neurospora is encoded in the residual
                                  network of the null frq mutants  . . . . 413--420
           David J. Murrell and   
              Ulf Dieckmann and   
                    Richard Law   On moment closures for population
                                  dynamics in continuous space . . . . . . 421--432
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 289--432 (7 August 2004) . . . . . ??

Journal of Theoretical Biology
Volume 229, Number 4, August 21, 2004

                K. Reinhold and   
                    L. Engqvist   Inaccurate mimicry and predator ecology  433--434
                M. J. Plank and   
              B. D. Sleeman and   
                    P. F. Jones   A mathematical model of tumour
                                  angiogenesis, regulated by vascular
                                  endothelial growth factor and the
                                  angiopoietins  . . . . . . . . . . . . . 435--454
          Kalet León and   
                  Jose Faro and   
                 Jorge Carneiro   A general mathematical framework to
                                  model generation structure in a
                                  population of asynchronously dividing
                                  cells  . . . . . . . . . . . . . . . . . 455--476
                  Abraham Peper   A theory of drug tolerance and
                                  dependence I: a conceptual analysis  . . 477--490
                  Abraham Peper   A theory of drug tolerance and
                                  dependence II: the mathematical model    491--500
              Ryota Tomioka and   
            Hidenori Kimura and   
       Tetsuya J. Kobayashi and   
                Kazuyuki Aihara   Multivariate analysis of noise in
                                  genetic regulatory networks  . . . . . . 501--521
      Reinhard Laubenbacher and   
              Brandilyn Stigler   A computational algebra approach to the
                                  reverse engineering of gene regulatory
                                  networks . . . . . . . . . . . . . . . . 523--537
            Barbara Drossel and   
             Alan J. McKane and   
             Christopher Quince   The impact of nonlinear functional
                                  responses on the long-term evolution of
                                  food web structure . . . . . . . . . . . 539--548
           Lindsay Browning and   
               Andrew M. Colman   Evolution of coordinated alternating
                                  reciprocity in repeated dyadic games . . 549--557
               David Schley and   
       C. Patrick Doncaster and   
                    Tim Sluckin   Population models of sperm-dependent
                                  parthenogenesis  . . . . . . . . . . . . 559--572
                      Anonymous   Author Index . . . . . . . . . . . . . . EX573--EX574
                      Anonymous   IFC --- Editorial Board  . . . . . . . . ifc--ifc
                      Anonymous   Pages 433--572 (21 August 2004)  . . . . ??
                      Anonymous   Subject Index  . . . . . . . . . . . . . EX575--EX580


Journal of Theoretical Biology
Volume 230, Number 1, September 7, 2004

       Dimitra D. Dionysiou and   
     Georgios S. Stamatakos and   
       Nikolaos K. Uzunoglu and   
      Konstantina S. Nikita and   
               Antigoni Marioli   A four-dimensional simulation model of
                                  tumour response to radiotherapy in vivo:
                                  parametric validation considering
                                  radiosensitivity, genetic profile and
                                  fractionation  . . . . . . . . . . . . . 1--20
A. Chavarría-Krauser and   
                      U. Schurr   A cellular growth model for root tips    21--32
             Anthony F. Bogaert   The prevalence of male homosexuality:
                                  the effect of fraternal birth order and
                                  variations in family size  . . . . . . . 33--37
              K. A. Lindsay and   
            J. R. Rosenberg and   
                      G. Tucker   A note on the discrepancy between the
                                  predicted and observed speed of the
                                  propagated action potential in the squid
                                  giant axon . . . . . . . . . . . . . . . 39--48
                Dino Accoto and   
           Piero Castrataro and   
                    Paolo Dario   Biomechanical analysis of Oligochaeta
                                  crawling . . . . . . . . . . . . . . . . 49--55
            Mayuko Nakamaru and   
                 Simon A. Levin   Spread of two linked social norms on
                                  complex interaction networks . . . . . . 57--64
            Robert Schlicht and   
                      Yoh Iwasa   Forest gap dynamics and the Ising model  65--75
  Ramón Hegedüs and   
    Gábor Horváth   How and why are uniformly
                                  polarization-sensitive retinae subject
                                  to polarization-related artefacts?
                                  Correction of some errors in the theory
                                  of polarization-induced false colours    77--87
      Constantinos N. Maganaris   A predictive model of moment-angle
                                  characteristics in human skeletal
                                  muscle: Application and validation in
                                  muscles across the ankle joint . . . . . 89--98
             Steven D. Webb and   
                 Markus R. Owen   Intra-membrane ligand diffusion and cell
                                  shape modulate juxtacrine patterning . . 99--117
             Jason M. Haugh and   
           Ian C. Schneider and   
                 Jodee M. Lewis   On the cross-regulation of protein
                                  tyrosine phosphatases and receptor
                                  tyrosine kinases in intracellular
                                  signaling  . . . . . . . . . . . . . . . 119--132
                    Bin Yan and   
    Barbara A. Methé and   
            Derek R. Lovley and   
                 Julia Krushkal   Computational prediction of conserved
                                  operons and phylogenetic footprinting of
                                  transcription regulatory elements in the
                                  metal-reducing bacterial family
                                  Geobacteraceae . . . . . . . . . . . . . 133--144
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--144 (7 September 2004)  . . . . ??

Journal of Theoretical Biology
Volume 230, Number 2, September 21, 2004

              Rukmini Kumar and   
            Gilles Clermont and   
             Yoram Vodovotz and   
                 Carson C. Chow   The dynamics of acute inflammation . . . 145--155
          Hiroyuki Yokomizo and   
               Patsy Haccou and   
                      Yoh Iwasa   Multiple-year optimization of
                                  conservation effort and monitoring
                                  effort for a fluctuating population  . . 157--171
                  Ray Blanchard   Quantitative and theoretical analyses of
                                  the relation between older brothers and
                                  homosexuality in men . . . . . . . . . . 173--187
             Donald R. Forsdyke   Chromosomal speciation: a reply  . . . . 189--196
                     Tsvi Sachs   Self-organization of tree form: a model
                                  for complex social systems . . . . . . . 197--202
             Manuel Mendoza and   
              Brian Goodwin and   
                  Carlos Criado   Emergence of community structure in
                                  terrestrial mammal-dominated ecosystems  203--214
              Dinakar Desai and   
                Kunbo Zhang and   
               Sailen Barik and   
            Alok Srivastava and   
           Mark E. Bolander and   
                 Gobinda Sarkar   Intragenic codon bias in a set of mouse
                                  and human genes  . . . . . . . . . . . . 215--225
            Natalia L. Komarova   Replicator-mutator equation,
                                  universality property and population
                                  dynamics of learning . . . . . . . . . . 227--239
               Sander Bruun and   
                  Johan Six and   
                 Lars S. Jensen   Estimating vital statistics and age
                                  distributions of measurable soil organic
                                  carbon fractions based on their pathway
                                  of formation and radiocarbon content . . 241--250
                  Seymour Garte   Fractal properties of the human genome   251--260
                Roland Thar and   
              Michael Kühl   Propagation of electromagnetic radiation
                                  in mitochondria? . . . . . . . . . . . . 261--270
           Emmanuel Garcion and   
            Bradley Wallace and   
          Laurent Pelletier and   
                    Didier Wion   RNA mutagenesis and sporadic prion
                                  diseases . . . . . . . . . . . . . . . . 271--274
         Kalman Schulgasser and   
                  Allan Witztum   Spiralling upward  . . . . . . . . . . . 275--280
         Kalman Schulgasser and   
                  Allan Witztum   The hierarchy of chirality . . . . . . . 281--288
                      Anonymous   IFC- Editorial board . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 145--288 (21 September 2004) . . . ??

Journal of Theoretical Biology
Volume 230, Number 3, October 7, 2004

        Theodore J. Perkins and   
               Mike Hallett and   
                     Leon Glass   Inferring models of gene expression
                                  dynamics . . . . . . . . . . . . . . . . 289--299
               David Orrell and   
                  Hamid Bolouri   Control of internal and external noise
                                  in genetic regulatory networks . . . . . 301--312
             Shigeyuki Aoki and   
                   Utako Kurosu   How many soldiers are optimal for an
                                  aphid colony?  . . . . . . . . . . . . . 313--317
            Anders Eriksson and   
          Kristian Lindgren and   
            Torbjörn Lundh   War of attrition with implicit time cost 319--332
            Juan F. Poyatos and   
                Amancio Carnero   Non-neutral role of replicative
                                  senescence in tissue homeostasis and
                                  tumorigenesis  . . . . . . . . . . . . . 333--341
                   A. P. Martin   A Malthusian curb on spatial structure
                                  in microorganism populations . . . . . . 343--349
           Stefano Allesina and   
                 Antonio Bodini   Who dominates whom in the ecosystem?
                                  Energy flow bottlenecks and cascading
                                  extinctions  . . . . . . . . . . . . . . 351--358
    Radhakrishnan Nagarajan and   
              Jane E. Aubin and   
          Charlotte A. Peterson   Modeling genetic networks from clonal
                                  analysis . . . . . . . . . . . . . . . . 359--373
                     Wei Li and   
              Shuo-Xing Dou and   
                   Peng-Ye Wang   Brownian dynamics simulation of
                                  nucleosome formation and disruption
                                  under stretching . . . . . . . . . . . . 375--383
       Leonid B. Katsnelson and   
        Larissa V. Nikitina and   
               Denis Chemla and   
             Olga Solovyova and   
         Catherine Coirault and   
          Yves Lecarpentier and   
          Vladimir S. Markhasin   Influence of viscosity on myocardium
                                  mechanical activity: a mathematical
                                  model  . . . . . . . . . . . . . . . . . 385--405
           Benjamin Kenward and   
     Carl-Adam Wachtmeister and   
          Stefano Ghirlanda and   
                 Magnus Enquist   Spots and stripes: the evolution of
                                  repetition in visual signal form . . . . 407--419
            Bruce P. Graham and   
                Arjen van Ooyen   Transport limited effects in a model of
                                  dendritic branching  . . . . . . . . . . 421--432
                      Anonymous   IFC- Editorial board . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 289--432 (7 October 2004)  . . . . ??

Journal of Theoretical Biology
Volume 230, Number 4, October 21, 2004

              John J. Tyson and   
                     Leon Glass   Arthur T. Winfree (1942--2002) . . . . . 433--439
                Rachael Winfree   Art Winfree, Artist of Science . . . . . 441--443
                Bradley J. Roth   Art Winfree and the bidomain model of
                                  cardiac tissue . . . . . . . . . . . . . 445--449
                   George Oster   Clocks and patterns in Myxobacteria: a
                                  remembrance of Art Winfree . . . . . . . 451--458
                James P. Keener   The topology of defibrillation . . . . . 459--473
         José Jalife and   
                 Omer Berenfeld   Molecular mechanisms and global dynamics
                                  of fibrillation: an integrative approach
                                  to the underlying basis of vortex-like
                                  reentry  . . . . . . . . . . . . . . . . 475--487
                  S. Takagi and   
                   A. Pumir and   
             D. Pazó and   
                  I. Efimov and   
                V. Nikolski and   
                     V. Krinsky   A physical approach to remove anatomical
                                  reentries: a bidomain study  . . . . . . 489--497
            T. Krogh-Madsen and   
                   L. Glass and   
               E. J. Doedel and   
                  M. R. Guevara   Apparent discontinuities in the
                                  phase-resetting response of cardiac
                                  pacemakers . . . . . . . . . . . . . . . 499--519
           Daniel B. Forger and   
                David Paydarfar   Starting, stopping, and resetting
                                  biological oscillators: in search of
                                  optimum perturbations  . . . . . . . . . 521--532
           Daniel B. Forger and   
              Charles S. Peskin   Model based conjectures on mammalian
                                  clock controversies  . . . . . . . . . . 533--539
     Jean-Christophe Leloup and   
               Albert Goldbeter   Modeling the mammalian circadian clock:
                                  Sensitivity analysis and multiplicity of
                                  oscillatory mechanisms . . . . . . . . . 541--562
   Béla Novák and   
                  John J. Tyson   A model for restriction point control of
                                  the mammalian cell cycle . . . . . . . . 563--579
                Stuart Kauffman   A proposal for using the ensemble
                                  approach to understand genetic
                                  regulatory networks  . . . . . . . . . . 581--590
            Bertrand Clarke and   
              Glenn Fawcett and   
              Jay E. Mittenthal   Netscan: a procedure for generating
                                  reaction networks by size  . . . . . . . 591--602
                      Anonymous   Author Index . . . . . . . . . . . . . . 603--604
                      Anonymous   Subject Index  . . . . . . . . . . . . . 605--609
                      Anonymous   (ATW)  . . . . . . . . . . . . . . . . . ??
                      Anonymous   IFC- Editorial board . . . . . . . . . . ifc--ifc


Journal of Theoretical Biology
Volume 231, Number 1, November 7, 2004

                  Emi Shudo and   
                      Yoh Iwasa   Erratum to ``Inducible defense against
                                  pathogens and parasites: optimal choice
                                  among multiple options'' [J. Theor.
                                  Biol. (2001) \bf 209, 233--247]  . . . . 1--1
       Soile V. E. Keränen   Simulation study on effects of signaling
                                  network structure on the developmental
                                  increase in complexity . . . . . . . . . 3--21
                  K. Sriram and   
               M. S. Gopinathan   A two variable delay model for the
                                  circadian rhythm of Neurospora crassa    23--38
               Bent H. Havsteen   Control of the pathogenic conformational
                                  change of the prion protein by an
                                  attractor of low order . . . . . . . . . 39--48
          K. K. Subramanian and   
                    Atul Narang   A mechanistic model for eukaryotic
                                  gradient sensing: Spontaneous and
                                  induced phosphoinositide polarization    49--67
          Ivar Òstby and   
            Gunnar Kvalheim and   
             Leiv S. Rusten and   
             Per Gròttum   Mathematical modeling of granulocyte
                                  reconstitution after high-dose
                                  chemotherapy with stem cell support:
                                  effect of post-transplant G-CSF
                                  treatment  . . . . . . . . . . . . . . . 69--83
            Song Jiang-Ning and   
               Li Wei-Jiang and   
                      Xu Wen-Bo   Cooperativity of the oxidization of
                                  cysteines in globular proteins . . . . . 85--95
             Margarita Ifti and   
        Timothy Killingback and   
                Michael Doebeli   Effects of neighbourhood size and
                                  connectivity on the spatial Continuous
                                  Prisoner's Dilemma . . . . . . . . . . . 97--106
            Hisashi Ohtsuki and   
                      Yoh Iwasa   How should we define goodness? ---
                                  reputation dynamics in indirect
                                  reciprocity  . . . . . . . . . . . . . . 107--120
     Alexander B. Medvinsky and   
          Andrew Y. Morozov and   
          Vassili V. Velkov and   
                Bai-Lian Li and   
         Mikhail S. Sokolov and   
                  Horst Malchow   Modeling the invasion of recessive
                                  Bt-resistant insects: An impact on
                                  transgenic plants  . . . . . . . . . . . 121--127
      John M. C. Hutchinson and   
                 Konrad Halupka   Mate choice when males are in patches:
                                  optimal strategies and good rules of
                                  thumb  . . . . . . . . . . . . . . . . . 129--151
                      Anonymous   IFC- Editorial board . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--152 (7 November 2004) . . . . . ??

Journal of Theoretical Biology
Volume 231, Number 2, November 21, 2004

         Brajendra K. Singh and   
       Joydev Chattopadhyay and   
                 Somdatta Sinha   The role of virus infection in a simple
                                  phytoplankton zooplankton system . . . . 153--166
       Zs. I. Németh and   
                  L. Albert and   
                      Sz. Varga   Characterization of germination with
                                  physical parameters: correlation of
                                  relative mass and density as an
                                  indicator function of the germination of
                                  European Turkey oak acorn  . . . . . . . 167--174
               Jan Alboszta and   
                Jacek Mie\ckisz   Stability of evolutionarily stable
                                  strategies in discrete replicator
                                  dynamics with time delay . . . . . . . . 175--179
               Andrew Yates and   
              Robin Callard and   
                 Jaroslav Stark   Combining cytokine signalling with T-bet
                                  and GATA-3 regulation in Th1 and Th2
                                  differentiation: a model for cellular
                                  decision-making  . . . . . . . . . . . . 181--196
         Paulo R. A. Campos and   
     Viviane M. de Oliveira and   
      Günter P. Wagner and   
               Peter F. Stadler   Gene phylogenies and protein-protein
                                  interactions: possible artifacts
                                  resulting from shared protein
                                  interaction partners . . . . . . . . . . 197--202
             John C. Dallon and   
                 Hans G. Othmer   How cellular movement determines the
                                  collective force generated by the
                                  \bionameDictyostelium discoideum slug    203--222
                     Johan Lind   What determines probability of surviving
                                  predator attacks in bird migration?: the
                                  relative importance of vigilance and
                                  fuel load  . . . . . . . . . . . . . . . 223--227
              J. M. Ireland and   
               R. A. Norman and   
                 J. V. Greenman   The effect of seasonal host birth rates
                                  on population dynamics: the importance
                                  of resonance . . . . . . . . . . . . . . 229--238
    Antonio Torres-Montaner and   
                   David Hughes   A hypothetical anti-neoplastic mechanism
                                  associated to reserve cells  . . . . . . 239--248
              C. Athena Aktipis   Know when to walk away: contingent
                                  movement and the evolution of
                                  cooperation  . . . . . . . . . . . . . . 249--260
                 Mark Broom and   
             Carola Borries and   
                 Andreas Koenig   Infanticide and infant defence by
                                  males-modelling the conditions in
                                  primate multi-male groups  . . . . . . . 261--270
             Bengt O. Bengtsson   Modelling the evolution of genomes with
                                  integrated external and internal
                                  functions  . . . . . . . . . . . . . . . 271--278
             Alexander John and   
     Andreas Schadschneider and   
        Debashish Chowdhury and   
            Katsuhiro Nishinari   Collective effects in traffic on
                                  bi-directional ant trails  . . . . . . . 279--285
Moisés Santillán and   
               Eduardo S. Zeron   Dynamic influence of feedback enzyme
                                  inhibition and transcription attenuation
                                  on the tryptophan operon response to
                                  nutritional shifts . . . . . . . . . . . 287--298
       Göran Bengtsson and   
               Elna Nilsson and   
        Tobias Rydén and   
              Magnus Wiktorsson   Irregular walks and loops combines in
                                  small-scale movement of a soil insect:
                                  implications for dispersal biology . . . 299--306
                      Anonymous   IFC- Editorial board . . . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 153--306 (21 November
                                  2004)  . . . . . . . . . . . . . . . . . ??

Journal of Theoretical Biology
Volume 231, Number 3, December 7, 2004

              Jacques Ninio and   
            Sebastian Amigorena   How B cells and dendritic cells may
                                  cooperate in antigen purification  . . . 309--317
                 S. Thaller and   
                      H. Wagner   The relation between Hill's equation and
                                  individual muscle properties . . . . . . 319--332
         P. C. Luttikhuizen and   
           P. J. C. Honkoop and   
                   J. Drent and   
                J. van der Meer   A general solution for optimal egg size
                                  during external fertilization, extended
                                  scope for intermediate optimal egg size
                                  and the introduction of Don Ottavio
                                  `tango'  . . . . . . . . . . . . . . . . 333--343
      Jan Engelstädter and   
             Arndt Telschow and   
              Peter Hammerstein   Infection dynamics of different
                                  \bionameWolbachia-types within one host
                                  population . . . . . . . . . . . . . . . 345--355
     Jose L. Segovia-Juarez and   
              Suman Ganguli and   
               Denise Kirschner   Identifying control mechanisms of
                                  granuloma formation during \bionameM.
                                  tuberculosis infection using an
                                  agent-based model  . . . . . . . . . . . 357--376
               Susana Vinga and   
               Jonas S. Almeida   Rényi continuous entropy of DNA sequences 377--388
          Karine Poitrineau and   
               Sam P. Brown and   
            Michael E. Hochberg   The joint evolution of defence and
                                  inducibility against natural enemies . . 389--396
             S. C. O'Connor and   
                 P. A. Robinson   Unifying and interpreting the spectral
                                  wavenumber content of EEGs, ECoGs, and
                                  ERPs . . . . . . . . . . . . . . . . . . 397--412
            Donald. L. Rowe and   
         Peter. A. Robinson and   
         Christopher. J. Rennie   Estimation of neurophysiological
                                  parameters from the waking EEG using a
                                  biophysical model of brain dynamics  . . 413--433
               Masashi Kamo and   
                  Michael Boots   The curse of the pharaoh in space:
                                  free-living infectious stages and the
                                  evolution of virulence in spatially
                                  explicit populations . . . . . . . . . . 435--441
              Michael A. Henson   Modeling the synchronization of yeast
                                  respiratory oscillations . . . . . . . . 443--458
                      Anonymous   IFC- Editorial board . . . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 309--458 (7 December
                                  2004)  . . . . . . . . . . . . . . . . . ??

Journal of Theoretical Biology
Volume 231, Number 4, December 21, 2004

       Barry R. Pittendrigh and   
         Patrick J. Gaffney and   
          Joseph E. Huesing and   
            David W. Onstad and   
           Richard T. Roush and   
               Larry L. Murdock   ``Active'' refuges can inhibit the
                                  evolution of resistance in insects
                                  towards transgenic insect-resistant
                                  plants . . . . . . . . . . . . . . . . . 461--474
           Hannelore Brandt and   
                   Karl Sigmund   The logic of reprobation: assessment and
                                  action rules for indirect reciprocation  475--486
        Christopher P. Fall and   
             John M. Wagner and   
             Leslie M. Loew and   
             Richard Nuccitelli   Cortically restricted production of IP3
                                  leads to propagation of the
                                  fertilization Ca$^{2+}$ wave along the
                                  cell surface in a model of the Xenopus
                                  egg  . . . . . . . . . . . . . . . . . . 487--496
          Magnus Wiktorsson and   
        Tobias Rydén and   
               Elna Nilsson and   
           Göran Bengtsson   Modelling the movement of a soil insect  497--513
         Sabrina L. Spencer and   
        Matthew J. Berryman and   
José A. García and   
                   Derek Abbott   An ordinary differential equation model
                                  for the multistep transformation to
                                  cancer . . . . . . . . . . . . . . . . . 515--524
                 Audun Bakk and   
                   Ralf Metzler   Nonspecific binding of the OR repressors
                                  CI and Cro of bacteriophage $ \lambda $  525--533
       Hugo A. van den Berg and   
                  David A. Rand   Foreignness as a matter of degree: the
                                  relative immunogenicity of peptide/MHC
                                  ligands  . . . . . . . . . . . . . . . . 535--548
              G. A. Pearson and   
              Scott Dillery and   
                    J. R. Meyer   Modeling intra-sexual competition in a
                                  sex pheromone system: how much can
                                  female movement affect female mating
                                  success? . . . . . . . . . . . . . . . . 549--555
                Anna Fukshansky   A stochastic model for the
                                  mutation-selection balance in an
                                  infinite asexual population with a
                                  genome of fixed size . . . . . . . . . . 557--562
                         Yi Tao   Intrinsic noise, gene regulation and
                                  steady-state statistics in a two-gene
                                  network  . . . . . . . . . . . . . . . . 563--568
                    John Currey   Incompatible mechanical properties in
                                  compact bone . . . . . . . . . . . . . . 569--580
          Jeffrey J. Morgan and   
          Ivan V. Surovtsev and   
                Paul A. Lindahl   A framework for whole-cell mathematical
                                  modeling . . . . . . . . . . . . . . . . 581--596
              Andrei Khrennikov   Probabilistic pathway representation of
                                  cognitive information  . . . . . . . . . 597--613
                      Anonymous   Author Index . . . . . . . . . . . . . . 615--616
                      Anonymous   Subject Index  . . . . . . . . . . . . . 617--622
                      Anonymous   IFC- Editorial board . . . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 461--622 (21 December
                                  2004)  . . . . . . . . . . . . . . . . . ??


Journal of Theoretical Biology
Volume 232, Number 1, January 7, 2005

           John M. McNamara and   
            Alasdair I. Houston   If animals know their own fighting
                                  ability, the evolutionarily stable level
                                  of fighting is reduced . . . . . . . . . 1--6
                  Meng Wang and   
                   Jie Yang and   
                 Zhi-Jie Xu and   
                  Kuo-Chen Chou   SLLE for predicting membrane protein
                                  types  . . . . . . . . . . . . . . . . . 7--15
                  Yoh Iwasa and   
           Franziska Michor and   
                Martin A. Nowak   Virus evolution within patients
                                  increases pathogenicity  . . . . . . . . 17--26
        D. Michael Goedecke and   
              Timothy C. Elston   A model for the oscillatory motion of
                                  single dynein molecules  . . . . . . . . 27--39
              David Israeli and   
                Simin Ziaei and   
              Patrick Gonin and   
                    Luis Garcia   A proposal for the physiological
                                  significance of mdr1 and Bcrp1/Abcg2
                                  gene expression in normal tissue
                                  regeneration and after cancer therapy    41--45
                Jacek Mie\ckisz   Equilibrium selection in evolutionary
                                  games with random matching of players    47--53
         Madhukar S. Dasika and   
             Anshuman Gupta and   
              Costas D. Maranas   DEMSIM: a discrete event based
                                  mechanistic simulation platform for gene
                                  expression and regulation dynamics . . . 55--69
        Lauren Ancel Meyers and   
          Babak Pourbohloul and   
            M. E. J. Newman and   
       Danuta M. Skowronski and   
              Robert C. Brunham   Network theory and SARS: predicting
                                  outbreak diversity . . . . . . . . . . . 71--81
       Petr Hanzálek and   
                  Jaroslav Kypr   DNA in phosphorus atom representation:
                                  the heteronomous double helices of
                                  poly(dA)$ \cdot $ poly(dT) and poly(dG)$
                                  \cdot $ poly(dC) and simulation of the
                                  yeast genome and of a human chromosome
                                  DNA  . . . . . . . . . . . . . . . . . . 83--91
                  Armin Meister   Calculation of binding length of
                                  base-specific DNA dyes by comparison of
                                  sequence and flow cytometric data.
                                  Application to \bionameOryza sativa and
                                  \bionameArabidopsis thaliana . . . . . . 93--97
        István Scheuring   The iterated continuous prisoner's
                                  dilemma game cannot explain the
                                  evolution of interspecific mutualism in
                                  unstructured populations . . . . . . . . 99--104
             Joseph H. Tien and   
             Danielle Lyles and   
                Mary Lou Zeeman   A potential role of modulating inositol
                                  1,4,5-trisphosphate receptor
                                  desensitization and recovery rates in
                                  regulating ovulation . . . . . . . . . . 105--117
         Héctor T. Arita   Range size in mid-domain models of
                                  species diversity  . . . . . . . . . . . 119--126
               Glenn Marion and   
             David L. Swain and   
              Mike R. Hutchings   Understanding foraging behaviour in
                                  spatially heterogeneous environments . . 127--142
                 David Hiebeler   Spatially correlated disturbances in a
                                  locally dispersing population model  . . 143--149
                      Anonymous   IFC- Editorial board . . . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 1--150 (7 January 2005)  ??

Journal of Theoretical Biology
Volume 232, Number 2, January 21, 2005

               R. A. Flickinger   Transcriptional frequency and cell
                                  determination  . . . . . . . . . . . . . 151--156
Anne-Gaëlle Rolland-Lagan and   
                Enrico Coen and   
           Stephen J. Impey and   
              J. Andrew Bangham   A computational method for inferring
                                  growth parameters and shape changes
                                  during development based on clonal
                                  analysis . . . . . . . . . . . . . . . . 157--177
               Laura Sontag and   
               David E. Axelrod   Evaluation of pathways for progression
                                  of heterogeneous breast tumors . . . . . 179--189
              Yukari Suzuki and   
             Yukihiko Toquenaga   Effects of information and group
                                  structure on evolution of altruism:
                                  analysis of two-score model by
                                  covariance and contextual analyses . . . 191--201
           Hiroshi Hakoyama and   
                      Yoh Iwasa   Extinction risk of a meta-population:
                                  aggregation approach . . . . . . . . . . 203--216
               R. W. Daniel and   
                  C. A. R. Boyd   Membrane transporters as machines:
                                  degenerate singularities as a
                                  requirement for function . . . . . . . . 217--221
       Catherine Beauchemin and   
                John Samuel and   
                 Jack Tuszynski   A simple cellular automaton model for
                                  influenza A viral infections . . . . . . 223--234
           G. Caron-Lormier and   
                       H. Berry   Amplification and oscillations in the
                                  FAK/Src kinase system during integrin
                                  signaling  . . . . . . . . . . . . . . . 235--248
                   D. Bauer and   
                   R. Grebe and   
                   A. Ehrlacher   First phase microcirculatory reaction to
                                  mechanical skin irritation: a three
                                  layer model of a compliant vascular tree 249--260
                Osnat Yaniv and   
                      Uzi Motro   Time-dependent animal conflicts: 1. The
                                  symmetric case . . . . . . . . . . . . . 261--275
                Osnat Yaniv and   
                      Uzi Motro   Time-dependent animal conflicts: 2. The
                                  asymmetric case  . . . . . . . . . . . . 277--284
      Zoltán Kutalik and   
                  Moe Razaz and   
          József Baranyi   Connection between stochastic and
                                  deterministic modelling of microbial
                                  growth . . . . . . . . . . . . . . . . . 285--299
                      Anonymous   IFC- Editorial board . . . . . . . . . . ifc--ifc
                      Anonymous   Pages EX1--EX2, 151--300 (21 January
                                  2005)  . . . . . . . . . . . . . . . . . ??

Journal of Theoretical Biology
Volume 232, Number 3, February 7, 2005

                      Anonymous   Erratum to: ``Proteomic analyser with
                                  applications to diagnostics and
                                  vaccines'' [Journal of Theoretical
                                  Biology \bf 228 (2003) 459--465] . . . . 301--301
      John M. C. Hutchinson and   
                 Konard Halupka   Erratum to ``Mate choice when males are
                                  in patches: optimal strategies and good
                                  rules of thumb'' [Journal of Theoretical
                                  Biology \bf 231 (2004) 129--151] . . . . 303--303
       Rogier P. O. Schulte and   
         Egbert A. Lantinga and   
             Michael J. Hawkins   A new family of Fisher-curves estimates
                                  Fisher's alpha more accurately . . . . . 305--313
              Hartmut Geyer and   
             Andre Seyfarth and   
              Reinhard Blickhan   Spring-mass running: simple approximate
                                  solution and application to gait
                                  stability  . . . . . . . . . . . . . . . 315--328
               M. P. Little and   
            J. A. N. Filipe and   
                K. M. Prise and   
                 M. Folkard and   
                 O. V. Belyakov   A model for radiation-induced bystander
                                  effects, with allowance for spatial
                                  position and the effects of cell
                                  turnover . . . . . . . . . . . . . . . . 329--338
        Nicole A. R. Walter and   
            Justin Stebbing and   
                 Walter Messier   The potential significance of adaptive
                                  evolution and dimerization in chimpanzee
                                  intercellular cell adhesion molecules
                                  (ICAMs)  . . . . . . . . . . . . . . . . 339--346
                   D. Bauer and   
                   R. Grebe and   
                   A. Ehrlacher   A three-layer continuous model of porous
                                  media to describe the first phase of
                                  skin irritation  . . . . . . . . . . . . 347--362
               Mario Recker and   
                  Sunetra Gupta   A model for pathogen population
                                  structure with cross-protection
                                  depending on the extent of overlap in
                                  antigenic variant repertoires  . . . . . 363--373
         Elisabeth Pécou   Splitting the dynamics of large
                                  biochemical interaction networks . . . . 375--384
          Karin A. Reijenga and   
  Yvonne M. G. A. van Megen and   
                Bob W. Kooi and   
          Barbara M. Bakker and   
             Jacky L. Snoep and   
      Henk W. van Verseveld and   
             Hans V. Westerhoff   Yeast glycolytic oscillations that are
                                  not controlled by a single oscillophore:
                                  a new definition of oscillophore
                                  strength . . . . . . . . . . . . . . . . 385--398
            Anders Eriksson and   
              Kristian Lindgren   Cooperation driven by mutations in
                                  multi-person Prisoner's Dilemma  . . . . 399--409
          F. Ellis McKenzie and   
             William H. Bossert   An integrated model of
                                  \bionamePlasmodium falciparum dynamics   411--426
             Michael Andrec and   
        Boris N. Kholodenko and   
             Ronald M. Levy and   
                 Eduardo Sontag   Inference of signaling and gene
                                  regulatory networks by steady-state
                                  perturbation experiments: structure and
                                  accuracy . . . . . . . . . . . . . . . . 427--441
                 Carlos Cordero   The evolutionary origin of signa in
                                  female Lepidoptera: natural and sexual
                                  selection hypotheses . . . . . . . . . . 443--449
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 301--450 (7 February 2005) . . . . ??

Journal of Theoretical Biology
Volume 232, Number 4, February 21, 2005

            Hisashi Ohtsuki and   
                      Yoh Iwasa   Erratum to: ``How should we define
                                  goodness? --- reputation dynamics in
                                  indirect reciprocity'' [Journal of
                                  Theoretical Biology \bf 231 (2004)
                                  107--120]  . . . . . . . . . . . . . . . 451--451
             Maria E. Orive and   
           Miles N. Stearns and   
              John K. Kelly and   
           Michael Barfield and   
           Marilyn S. Smith and   
                 Robert D. Holt   Viral infection in internally structured
                                  hosts. I. Conditions for persistent
                                  infection  . . . . . . . . . . . . . . . 453--466
               Shakti Gupta and   
             S. S. Pilyugin and   
                    Atul Narang   The dynamics of single-substrate
                                  continuous cultures: The role of
                                  ribosomes  . . . . . . . . . . . . . . . 467--490
             Alison B. Peet and   
           Peter A. Deutsch and   
   Enrique Peacock-López   Complex dynamics in a three-level
                                  trophic system with intraspecies
                                  interaction  . . . . . . . . . . . . . . 491--503
           Benjamin Lindner and   
           André Longtin   Effect of an exponentially decaying
                                  threshold on the firing statistics of a
                                  stochastic integrate-and-fire neuron . . 505--521
               S. J. Franks and   
                H. M. Byrne and   
         J. C. E. Underwood and   
                    C. E. Lewis   Biological inferences from a
                                  mathematical model of comedo ductal
                                  carcinoma in situ of the breast  . . . . 523--543
              Armin Rashidi and   
                Iman Khodarahmi   Nonlinear modeling of the
                                  atrioventricular node physiology in
                                  atrial fibrillation  . . . . . . . . . . 545--549
           Paul E. Anderson and   
         Henrik Jeldtoft Jensen   Network properties, species abundance
                                  and evolution in a model of evolutionary
                                  ecology  . . . . . . . . . . . . . . . . 551--558
               Li-Qian Zhou and   
                  Zu-Guo Yu and   
               Ji-Qing Deng and   
                     Vo Anh and   
                 Shun-Chao Long   A fractal method to distinguish coding
                                  and non-coding sequences in a complete
                                  genome based on a number sequence
                                  representation . . . . . . . . . . . . . 559--567
     G. Civelekoglu-Scholey and   
               A. Wayne Orr and   
                   I. Novak and   
              J.-J. Meister and   
             M. A. Schwartz and   
                    A. Mogilner   Model of coupled transient changes of
                                  Rac, Rho, adhesions and stress fibers
                                  alignment in endothelial cells
                                  responding to shear stress . . . . . . . 569--585
                P. S. Dodds and   
                    D. J. Watts   A generalized model of social and
                                  biological contagion . . . . . . . . . . 587--604
                      Anonymous   Author Index . . . . . . . . . . . . . . 605--606
                      Anonymous   Subject Index  . . . . . . . . . . . . . 607--612
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 451--612 (21 February 2005)  . . . ??


Journal of Theoretical Biology
Volume 233, Number 1, March 7, 2005

              Seymour S. Alpert   A limit on the energy transfer rate from
                                  the human fat store in hypophagia  . . . 1--13
                  Yoh Iwasa and   
           Franziska Michor and   
        Natalia L. Komarova and   
                Martin A. Nowak   Population genetics of tumor suppressor
                                  genes  . . . . . . . . . . . . . . . . . 15--23
           PhilipH. Crowley and   
      Christopher R. Stieha and   
          D. Nicholas McLetchie   Overgrowth competition, fragmentation
                                  and sex-ratio dynamics: a spatially
                                  explicit, sub-individual-based model . . 25--42
         Aydin Tözeren and   
          Charles W. Coward and   
               Sokol P. Petushi   Origins and evolution of cell phenotypes
                                  in breast tumors . . . . . . . . . . . . 43--54
                Kara J. O'Keefe   The evolution of virulence in pathogens
                                  with frequency-dependent transmission    55--64
               Satoki Sakai and   
                 Yasushi Harada   Production of offspring using current
                                  income and reserves: size-number
                                  trade-off and optimal offspring size . . 65--73
                  V. Calvez and   
            A. Korobeinikov and   
                    P. K. Maini   Cluster formation for multi-strain
                                  infections with cross-immunity . . . . . 75--83
                   R. Hewer and   
                       D. Meyer   Peptide immunogens designed to enhance
                                  immune responses against human
                                  immunodeficiency virus (HIV) mutant
                                  strains: a plausible means of preventing
                                  viral persistence  . . . . . . . . . . . 85--90
            Travis C. Porco and   
       James O. Lloyd-Smith and   
            Kimber L. Gross and   
              Alison P. Galvani   The effect of treatment on pathogen
                                  virulence  . . . . . . . . . . . . . . . 91--102
                     Amir Muzur   Toward an integrative theory of sleep
                                  and dreaming . . . . . . . . . . . . . . 103--118
    Hans K. Stenòien and   
            Bård Pedersen   Mutation and epimutation load in haploid
                                  and diploid life forms . . . . . . . . . 119--126
                    Pierre Wong   A hypothesis of the disc-sphere
                                  transformation of the erythrocytes
                                  between glass surfaces and of related
                                  observations . . . . . . . . . . . . . . 127--135
             Gyorgy Korniss and   
                  Thomas Caraco   Spatial dynamics of invasion: the
                                  geometry of introduced species . . . . . 137--150
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--150 (7 March 2005)  . . . . . . ??

Journal of Theoretical Biology
Volume 233, Number 2, March 21, 2005

                    C. Cudennec   On the transposition and the improvement
                                  of an allometric model from river
                                  networks to trees: identification of
                                  analogous objects, variables and
                                  modellings . . . . . . . . . . . . . . . 151--157
                 Yanni Xiao and   
            Roger G. Bowers and   
              Damian Clancy and   
                Nigel P. French   Understanding the dynamics of Salmonella
                                  infections in dairy herds: a modelling
                                  approach . . . . . . . . . . . . . . . . 159--175
                  Cailin Xu and   
              Mark S. Boyce and   
              Madhav Gadgil and   
           Vidyanand Nanjundiah   Forecasting spatially structured
                                  populations: the role of dispersal and
                                  scale  . . . . . . . . . . . . . . . . . 177--189
Juan M. García-Manso and   
Juan M. Martín-González and   
        Nancy Dávila and   
                Enrique Arriaza   Middle and long distance athletics races
                                  viewed from the perspective of
                                  complexity . . . . . . . . . . . . . . . 191--198
          Iztok Lebar Bajec and   
              Nikolaj Zimic and   
                      Miha Mraz   Simulating flocks on the wing: the fuzzy
                                  approach . . . . . . . . . . . . . . . . 199--220
              Georg A. Funk and   
       Vincent A. A. Jansen and   
       Sebastian Bonhoeffer and   
            Timothy Killingback   Spatial models of virus-immune dynamics  221--236
                Mahmut Ozer and   
                  Ivo Provaznik   A comparative tool for the validity of
                                  rate kinetics in ion channels by Onsager
                                  reciprocity theorem  . . . . . . . . . . 237--243
             G. D. Zacarias and   
             C. P. Ferreira and   
 J. X. Velasco-Hernández   Porosity and tortuosity relations as
                                  revealed by a mathematical model of
                                  biofilm structure  . . . . . . . . . . . 245--251
              L. Bodenstein and   
                    C. D. Stern   Formation of the chick primitive streak
                                  as studied in computer simulations . . . 253--269
             S. C. O'Connor and   
                 P. A. Robinson   Analysis of the electroencephalographic
                                  activity associated with thalamic tumors 271--286
         Dusan Lazár and   
           Petr Ilík and   
                 Jerzy Kruk and   
         Kazimierz Strzalka and   
                       Jan Naus   A theoretical study on effect of the
                                  initial redox state of cytochrome b 559
                                  on maximal chlorophyll fluorescence
                                  level $ (F M) $: implications for
                                  photoinhibition of photosystem II  . . . 287--300
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 151--300 (21 March 2005) . . . . . ??

Journal of Theoretical Biology
Volume 233, Number 3, April 7, 2005

        M. Bahman Bahramian and   
                   Helmut Zarbl   GENE impedance: a natural process for
                                  control of gene expression and the
                                  origin of RNA interference . . . . . . . 301--314
              Ricky O'Brien and   
                     Nev Fowkes   Modification patterns in germinating
                                  barley-malting II  . . . . . . . . . . . 315--325
            Elchanan Mossel and   
                     Mike Steel   Random biochemical networks: the
                                  probability of self-sustaining
                                  autocatalysis  . . . . . . . . . . . . . 327--336
               Michael E. Green   A possible role for phosphate in
                                  complexing the arginines of S4 in
                                  voltage gated channels . . . . . . . . . 337--341
           A. Rami Tzafriri and   
              Elazer R. Edelman   On the validity of the quasi-steady
                                  state approximation of bimolecular
                                  reactions in solution  . . . . . . . . . 343--350
         David A. Ratkowsky and   
                 June Olley and   
                       Tom Ross   Unifying temperature effects on the
                                  growth rate of bacteria and the
                                  stability of globular proteins . . . . . 351--362
            Roger G. Bowers and   
               Andrew Hoyle and   
               Andrew White and   
                  Michael Boots   The geometric theory of adaptive
                                  evolution: trade-off and invasion plots  363--377
              Almut Scherer and   
           Sebastian Bonhoeffer   Epitope down-modulation as a mechanism
                                  for the coexistence of competing T-cells 379--390
            Olivier Cinquin and   
              Jacques Demongeot   High-dimensional switches and the
                                  modelling of cellular differentiation    391--411
            Jun Nakabayashi and   
                   Akira Sasaki   Optimal phosphorylation step number of
                                  intracellular signal-transduction
                                  pathway  . . . . . . . . . . . . . . . . 413--421
              Pawe\l Paszek and   
           Tomasz Lipniacki and   
           Allan R. Brasier and   
                  Bing Tian and   
             David E. Nowak and   
                   Marek Kimmel   Stochastic effects of multiple
                                  regulators on expression profiles in
                                  eukaryotes . . . . . . . . . . . . . . . 423--433
            Pierre-Yves Oudeyer   The self-organization of speech sounds   435--449
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 301--450 (7 April 2005)  . . . . . ??

Journal of Theoretical Biology
Volume 233, Number 4, April 21, 2005

               Grzegorz Bartosz   Food toxicity contributes to the
                                  beneficial effects of calorie
                                  restriction  . . . . . . . . . . . . . . 451--452
               Gen Kurosawa and   
                      Yoh Iwasa   Temperature compensation in circadian
                                  clock models . . . . . . . . . . . . . . 453--468
           Chaitanya Athale and   
               Yuri Mansury and   
            Thomas S. Deisboeck   Simulating the impact of a molecular
                                  `decision-process' on cellular phenotype
                                  and multicellular patterns in brain
                                  tumors . . . . . . . . . . . . . . . . . 469--481
  Kimberly Forsten-Williams and   
              Ceres C. Chua and   
              Matthew A. Nugent   The kinetics of FGF-2 binding to heparan
                                  sulfate proteoglycans and MAP kinase
                                  signaling  . . . . . . . . . . . . . . . 483--499
            Hiroshi Yoshida and   
           Chikara Furusawa and   
                Kunihiko Kaneko   Selection of initial conditions for
                                  recursive production of multicellular
                                  organisms  . . . . . . . . . . . . . . . 501--514
               Geoff Clarke and   
             Charles J. Lumsden   Scale-free neurodegeneration: cellular
                                  heterogeneity and the stretched
                                  exponential kinetics of cell death . . . 515--525
                  Apoorva Patel   The triplet genetic code had a doublet
                                  predecessor  . . . . . . . . . . . . . . 527--532
Athanasius F. M. Marée and   
            Mitsuhiro Komba and   
                Cheryl Dyck and   
           Marek \Lab\kecki and   
          Diane T. Finegood and   
          Leah Edelstein-Keshet   Quantifying macrophage defects in type 1
                                  diabetes . . . . . . . . . . . . . . . . 533--551
                J. Verdasca and   
         M. M. Telo da Gama and   
                   A. Nunes and   
           N. R. Bernardino and   
              J. M. Pacheco and   
                    M. C. Gomes   Recurrent epidemics in small world
                                  networks . . . . . . . . . . . . . . . . 553--561
          Stephen L. Bearne and   
             Raymond J. Spiteri   Reduction of intrinsic kinetic and
                                  thermodynamic barriers for
                                  enzyme-catalysed proton transfers from
                                  carbon acid substrates . . . . . . . . . 563--571
              E. A. Codling and   
                     N. A. Hill   Sampling rate effects on measurements of
                                  correlated and biased random walks . . . 573--588
           Satoshi Kanazawa and   
             Griet Vandermassen   Engineers have more sons, nurses have
                                  more daughters: an evolutionary
                                  psychological extension of
                                  Baron--Cohen's extreme male brain theory
                                  of autism  . . . . . . . . . . . . . . . 589--599
                      Anonymous   Author Index . . . . . . . . . . . . . . 600--601
                      Anonymous   Subject Index  . . . . . . . . . . . . . 603--607
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 451--608 (21 April 2005) . . . . . ??


Journal of Theoretical Biology
Volume 234, Number 1, May 7, 2005

               Takashi Kunisawa   Branching orders among $ \alpha
                                  $-proteobacteria and mitochondria
                                  inferred from gene transpositions  . . . 1--5
               S. Kjelstrup and   
                 J. M. Rubi and   
                     D. Bedeaux   Active transport: a kinetic description
                                  based on thermodynamic grounds . . . . . 7--12
     Tinri Aegerter-Wilmsen and   
       Christof M. Aegerter and   
                  Ton Bisseling   Model for the robust establishment of
                                  precise proportions in the early
                                  Drosophila embryo  . . . . . . . . . . . 13--19
                    M. L. Lucas   Amendments to the theory underlying
                                  Ussing chamber data of chloride ion
                                  secretion after bacterial enterotoxin
                                  exposure . . . . . . . . . . . . . . . . 21--37
       Vincent A. A. Jansen and   
      Hester Korthals Altes and   
              Georg A. Funk and   
                 Dominik Wodarz   Contrasting B cell- and T cell-based
                                  protective vaccines  . . . . . . . . . . 39--48
        Sam Van Wassenbergh and   
                Peter Aerts and   
         Dominique Adriaens and   
                 Anthony Herrel   A dynamic model of mouth closing
                                  movements in clariid catfishes: the role
                                  of enlarged jaw adductors  . . . . . . . 49--65
                Akira Azuma and   
                 Masato Okamoto   Theoretical study on two-dimensional
                                  aerodynamic characteristics of unsteady
                                  wings  . . . . . . . . . . . . . . . . . 67--78
         Fumihide Shiraishi and   
                 Yuji Hatoh and   
                 Toshinori Irie   An efficient method for calculation of
                                  dynamic logarithmic gains in biochemical
                                  systems theory . . . . . . . . . . . . . 79--85
           Dominik Szczerba and   
    Gábor Székely   Computational model of flow-tissue
                                  interactions in intussusceptive
                                  angiogenesis . . . . . . . . . . . . . . 87--97
        Edmund Christiansen and   
                 Lars Garby and   
 Thorkild I. A. Sòrensen   Quantitative analysis of the energy
                                  requirements for development of obesity  99--106
              M. R. Bennett and   
                 L. Farnell and   
                   W. G. Gibson   A quantitative description of the
                                  contraction of blood vessels following
                                  the release of noradrenaline from
                                  sympathetic varicosities . . . . . . . . 107--122
        Jörg W. Stucki and   
                 Hans-Uwe Simon   Mathematical modeling of the regulation
                                  of caspase-3 activation and degradation  123--131
                   F. Hayot and   
                 C. Jayaprakash   A feedforward loop motif in
                                  transcriptional regulation: induction
                                  and repression . . . . . . . . . . . . . 133--143
                Yu-Dong Cai and   
              Guo-Ping Zhou and   
                  Kuo-Chen Chou   Predicting enzyme family classes by
                                  hybridizing gene product composition and
                                  pseudo-amino acid composition  . . . . . 145--149
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--150 (7 May 2005)  . . . . . . . ??

Journal of Theoretical Biology
Volume 234, Number 2, May 21, 2005

                 Marco Archetti   Accumulation of deleterious mutations in
                                  hybridogenetic organisms . . . . . . . . 151--152
      Nuno Sepúlveda and   
          Laurent Boucontet and   
              Pablo Pereira and   
                 Jorge Carneiro   Stochastic Modeling of T cell receptor $
                                  \gamma $ gene rearrangement  . . . . . . 153--165
                Mayumi Seto and   
                   Tasuku Akagi   Daisyworld inhabited with daisies
                                  incorporating a seed size/number
                                  trade-off: the mechanism of negative
                                  feedback on selection from a standpoint
                                  of the competition theory  . . . . . . . 167--172
             Hiroaki Takagi and   
                Kunihiko Kaneko   Dynamical systems basis of
                                  metamorphosis: diversity and plasticity
                                  of cellular states in reaction diffusion
                                  network  . . . . . . . . . . . . . . . . 173--186
                    Richard Fox   Directed molecular evolution by machine
                                  learning and the influence of nonlinear
                                  interactions . . . . . . . . . . . . . . 187--199
                Rajan Patel and   
             Ira M. Longini and   
          M. Elizabeth Halloran   Finding optimal vaccination strategies
                                  for pandemic influenza using genetic
                                  algorithms . . . . . . . . . . . . . . . 201--212
          Timothy C. Reluga and   
                 Steven Viscido   Simulated evolution of selfish herd
                                  behavior . . . . . . . . . . . . . . . . 213--225
             Denise M. Wolf and   
          Vijay V. Vazirani and   
                  Adam P. Arkin   Diversity in times of adversity:
                                  probabilistic strategies in microbial
                                  survival games . . . . . . . . . . . . . 227--253
             Denise M. Wolf and   
          Vijay V. Vazirani and   
                  Adam P. Arkin   A microbial modified prisoner's dilemma
                                  game: how frequency-dependent selection
                                  can lead to random phase variation . . . 255--262
                   J. P. Keener   A model for length control of flagellar
                                  hooks of Salmonella typhimurium  . . . . 263--275
                  A. J. Hulbert   On the importance of fatty acid
                                  composition of membranes for aging . . . 277--288
             T. K. Soboleva and   
             I. Vetharaniam and   
                A. J. Nixon and   
              R. Montenegro and   
              A. J. Pearson and   
                       J. Sneyd   Mathematical modelling of
                                  prolactin-receptor interaction and the
                                  corollary for prolactin receptor gene
                                  expression in skin . . . . . . . . . . . 289--298
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 151--298 (21 May 2005) . . . . . . ??

Journal of Theoretical Biology
Volume 234, Number 3, June 7, 2005

  Mauricio Rodríguez and   
            Theresa A. Good and   
           Melinda E. Wales and   
                Jean P. Hua and   
                  James R. Wild   Modeling allosteric regulation of de
                                  novo pyrimidine biosynthesis in
                                  \bionameEscherichia coli . . . . . . . . 299--310
               V. Vainstein and   
                 Y. Ginosar and   
                  M. Shoham and   
               D. O. Ranmar and   
                A. Ianovski and   
                        Z. Agur   The complex effect of granulocyte
                                  colony-stimulating factor on human
                                  granulopoiesis analyzed by a new
                                  physiologically-based mathematical model 311--327
              John J. Welch and   
                   David Waxman   The nk model and population genetics . . 329--340
   Alexander R. A. Anderson and   
             Bakhtier N. Vasiev   An individual based model of rippling
                                  movement in a myxobacteria population    341--349
               Anshul Dubey and   
          Matthew J. Realff and   
                 Jay H. Lee and   
           Andreas S. Bommarius   Support vector machines for learning to
                                  identify the critical positions of a
                                  protein  . . . . . . . . . . . . . . . . 351--361
               E. \`E. Saftenku   Modeling of slow glutamate diffusion and
                                  AMPA receptor activation in the
                                  cerebellar glomerulus  . . . . . . . . . 363--382
             J. C. W. Locke and   
               A. J. Millar and   
                   M. S. Turner   Modelling genetic networks with noisy
                                  and varied experimental data: the
                                  circadian clock in Arabidopsis thaliana  383--393
                 Xiting Yan and   
               Minghua Deng and   
               Wing K. Fung and   
                   Minping Qian   Detecting differentially expressed genes
                                  by relative entropy  . . . . . . . . . . 395--402
          Alexey V. Melkikh and   
           Vladimir D. Seleznev   Models of active transport of ions in
                                  biomembranes of various types of cells   403--412
         Jari Saramäki and   
                    Kimmo Kaski   Modelling development of epidemics with
                                  dynamic small-world networks . . . . . . 413--421
          Wolfram Liebermeister   Response to temporal parameter
                                  fluctuations in biochemical networks . . 423--438
         William P. Halford and   
           Keith J. Halford and   
                  Amy T. Pierce   Mathematical analysis demonstrates that
                                  interferons-$ \beta $ and -$ \gamma $
                                  interact in a multiplicative manner to
                                  disrupt herpes simplex virus replication 439--454
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 299--454 (7 June 2005) . . . . . . ??

Journal of Theoretical Biology
Volume 234, Number 4, June 21, 2005

               Wei-Yin Chen and   
                   Sankar Bokka   Stochastic modeling of nonlinear
                                  epidemiology . . . . . . . . . . . . . . 455--470
                Gottfried Sachs   Aerodynamic yawing moment
                                  characteristics of bird wings  . . . . . 471--478
        Victor Sivozhelezov and   
               Claudio Nicolini   Homology modeling of cytochrome P450scc
                                  and the mutations for optimal
                                  amperometric sensor  . . . . . . . . . . 479--485
         Mauro A. A. Castro and   
           Tor T. G. Onsten and   
      Rita M. C. de Almeida and   
      José C. F. Moreira   Profiling cytogenetic diversity with
                                  entropy-based karyotypic analysis  . . . 487--495
         Leighton Pritchard and   
                 Dave Corne and   
               Douglas Kell and   
                Jem Rowland and   
                    Mike Winson   A general model of error-prone PCR . . . 497--509
                Laura A. Miller   Structural dynamics and resonance in
                                  plants with nonlinear stiffness  . . . . 511--524
                     A. Tao and   
                     L. Tao and   
                   C. Nicholson   Cell cavities increase tortuosity in
                                  brain extracellular space  . . . . . . . 525--536
               Holger Dette and   
       Viatcheslav B. Melas and   
          Andrey Pepelyshev and   
                Nikolay Strigul   Robust and efficient design of
                                  experiments for the Monod model  . . . . 537--550
                 Dan Ladley and   
                   Seth Bullock   The role of logistic constraints in
                                  termite construction of chambers and
                                  tunnels  . . . . . . . . . . . . . . . . 551--564
                    D. M. Lewis   A simple model of plankton population
                                  dynamics coupled with a LES of the
                                  surface mixed layer  . . . . . . . . . . 565--591
                  Adam Kent and   
     Susanne Plesner Jensen and   
           C. Patrick Doncaster   Model of microtine cycles caused by
                                  lethal toxins in non-preferred food
                                  plants . . . . . . . . . . . . . . . . . 593--604
                      Anonymous   Author Index . . . . . . . . . . . . . . 605--606
                      Anonymous   Subject Index  . . . . . . . . . . . . . 607--612
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 455--612 (21 June 2005)  . . . . . ??


Journal of Theoretical Biology
Volume 235, Number 1, July 7, 2005

           Morten Gram Pedersen   A comment on noise enhanced bursting in
                                  pancreatic $ \beta $-cells . . . . . . . 1--3
              M. Keith Chen and   
                    Marc Hauser   Modeling reciprocation and cooperation
                                  in primates: evidence for a punishing
                                  strategy . . . . . . . . . . . . . . . . 5--12
                  Natalie Arkus   A mathematical model of cellular
                                  apoptosis and senescence through the
                                  dynamics of telomere loss  . . . . . . . 13--32
        Alessandro Ludovisi and   
             Piera Pandolfi and   
      Maria Illuminata Taticchi   The strategy of ecosystem development:
                                  specific dissipation as an indicator of
                                  ecosystem maturity . . . . . . . . . . . 33--43
             Kourosh Saberi and   
               Agavni Petrosyan   Neural cross-correlation and signal
                                  decorrelation: insights into coding of
                                  auditory space . . . . . . . . . . . . . 45--56
                R. Miftahof and   
                     E. Fedotov   Intestinal propulsion of a solid
                                  non-deformable bolus . . . . . . . . . . 57--70
        Michael Kücken and   
                 Alan C. Newell   Fingerprint formation  . . . . . . . . . 71--83
           Sylvain Billiard and   
           Charlotte Faurie and   
                 Michel Raymond   Maintenance of handedness polymorphism
                                  in humans: a frequency-dependent
                                  selection model  . . . . . . . . . . . . 85--93
          Maria Christianou and   
                     Bo Ebenman   Keystone species and vulnerable species
                                  in ecological communities: strong or
                                  weak interactors?  . . . . . . . . . . . 95--103
  M. J. Gómez-Benito and   
  J. M. García-Aznar and   
               J. H. Kuiper and   
              M. Doblaré   Influence of fracture gap size on the
                                  pattern of long bone healing: a
                                  computational study  . . . . . . . . . . 105--119
             Borbala Mazzag and   
  Christopher J. Tignanelli and   
               Gregory D. Smith   The effect of residual Ca$^{2+}$ on the
                                  stochastic gating of Ca$^{2+}$-regulated
                                  Ca$^{2+}$ channel models . . . . . . . . 121--150
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--150 (7 July 2005) . . . . . . . ??

Journal of Theoretical Biology
Volume 235, Number 2, July 21, 2005

             Romulus Breban and   
                   Sally Blower   The reinfection threshold does not exist 151--152
                   M. Zheng and   
               Y. Kashimori and   
                 O. Hoshino and   
                  K. Fujita and   
                     T. Kambara   Behavior pattern (innate action) of
                                  individuals in fish schools generating
                                  efficient collective evasion from
                                  predation  . . . . . . . . . . . . . . . 153--167
         Jacob P. Couturier and   
       Robert S. Root-Bernstein   HIV may produce inhibitory microRNAs
                                  (miRNAs) that block production of CD28,
                                  CD4 and some interleukins  . . . . . . . 169--184
      Francisco J. P. Lopes and   
   Carlos E. Vanario-Alonso and   
             Paulo M. Bisch and   
          Fernando M. C. Vieira   A kinetic mechanism for Drosophila
                                  bicoid cooperative binding . . . . . . . 185--198
                  John A. Byers   Chemical constraints on the evolution of
                                  olfactory communication channels of
                                  moths  . . . . . . . . . . . . . . . . . 199--206
               Xin-Sheng Hu and   
                   Fangliang He   Background selection and population
                                  differentiation  . . . . . . . . . . . . 207--219
          Ehsan Jabbarzadeh and   
              Cameron F. Abrams   Chemotaxis and random motility in
                                  unsteady chemoattractant fields: a
                                  computational study  . . . . . . . . . . 221--232
       Angel Sánchez and   
          José A. Cuesta   Altruism may arise from individual
                                  selection  . . . . . . . . . . . . . . . 233--240
        Yoshihiro Morishita and   
       Tetsuya J. Kobayashi and   
                Kazuyuki Aihara   Evaluation of the performance of
                                  mechanisms for noise attenuation in a
                                  single-gene expression . . . . . . . . . 241--264
             Arndt Telschow and   
             Norio Yamamura and   
                 John H. Werren   Bidirectional cytoplasmic
                                  incompatibility and the stable
                                  coexistence of two Wolbachia strains in
                                  parapatric host populations  . . . . . . 265--274
     Marc Barthélemy and   
               Alain Barrat and   
   Romualdo Pastor-Satorras and   
          Alessandro Vespignani   Dynamical patterns of epidemic outbreaks
                                  in complex heterogeneous networks  . . . 275--288
                    D. A. White   Architectural mutation and leaf form,
                                  for the palmate series . . . . . . . . . 289--301
                      Anonymous   announcement . . . . . . . . . . . . . . 303--303
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 151--304 (21 July 2005)  . . . . . ??

Journal of Theoretical Biology
Volume 235, Number 3, August 7, 2005

       Jonathan M. Yearsley and   
           Ilias Kyriazakis and   
             Iain J. Gordon and   
          Sarah L. Johnston and   
           John R. Speakman and   
            Bert J. Tolkamp and   
               Andrew W. Illius   A life history model of somatic damage
                                  associated with resource acquisition:
                                  damage protection or prevention? . . . . 305--317
              Hani Goodarzi and   
   Hamed Shateri Najafabadi and   
              Kasra Hassani and   
         Hamed Ahmadi Nejad and   
             Noorossadat Torabi   On the optimality of the genetic code,
                                  with the consideration of coevolution
                                  theory by comparison of prominent cost
                                  measure matrices . . . . . . . . . . . . 318--325
             Helen Trottier and   
                Pierre Philippe   Scaling properties of childhood
                                  infectious diseases epidemics before and
                                  after mass vaccination in Canada . . . . 326--337
        Natalia L. Komarova and   
               Vladimir Mironov   On the role of endothelial progenitor
                                  cells in tumor neovascularization  . . . 338--349
                Phil Hanlon and   
                    Andy Lorenz   A computational method to detect
                                  epistatic effects contributing to a
                                  quantitative trait . . . . . . . . . . . 350--364
                     Wei Li and   
              Shuo-Xing Dou and   
                   Peng-Ye Wang   The histone octamer influences the
                                  wrapping direction of DNA on it:
                                  Brownian dynamics simulation of the
                                  nucleosome chirality . . . . . . . . . . 365--372
         Ford Ballantyne IV and   
             Andrew J. Kerkhoff   Reproductive correlation and
                                  mean-variance scaling of reproductive
                                  output for a forest model  . . . . . . . 373--380
            Y. Lecarpentier and   
                F.-X. Blanc and   
                J. Quillard and   
        J.-L. Hébert and   
                X. Krokidis and   
                    C. Coirault   Statistical mechanics of myosin
                                  molecular motors in skeletal muscles . . 381--392
              Arne Traulsen and   
        Anirvan M. Sengupta and   
                Martin A. Nowak   Stochastic evolutionary dynamics on two
                                  levels . . . . . . . . . . . . . . . . . 393--401
               R. M. Canals and   
             L. S. Emeterio and   
                     J. Peralta   Autotoxicity in Lolium rigidum:
                                  analyzing the role of chemically
                                  mediated interactions in annual plant
                                  populations  . . . . . . . . . . . . . . 402--407
            Niamh C. Nowlan and   
         Patrick J. Prendergast   Evolution of mechanoregulation of bone
                                  growth will lead to non-optimal bone
                                  phenotypes . . . . . . . . . . . . . . . 408--418
                 Hiro-Sato Niwa   Power-law scaling in
                                  dimension-to-biomass relationship of
                                  fish schools . . . . . . . . . . . . . . 419--430
            Madalena Chaves and   
         Réka Albert and   
              Eduardo D. Sontag   Robustness and fragility of Boolean
                                  models for genetic regulatory networks   431--449
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 305--450 (7 August 2005) . . . . . ??

Journal of Theoretical Biology
Volume 235, Number 4, August 21, 2005

          Alexander G. Dimitrov   Internodal sodium channels ensure active
                                  processes under myelin manifesting in
                                  depolarizing afterpotentials . . . . . . 451--462
            Steven M. White and   
               K. A. Jane White   Relating coupled map lattices to
                                  integro-difference equations:
                                  dispersal-driven instabilities in
                                  coupled map lattices . . . . . . . . . . 463--475
           Kieran Smallbone and   
          David J. Gavaghan and   
          Robert A. Gatenby and   
                Philip K. Maini   The role of acidity in solid tumour
                                  growth and invasion  . . . . . . . . . . 476--484
               M. V. Laptev and   
                  N. K. Nikulin   Synchronization of oscillations of
                                  proliferation of keratinocytes in
                                  psoriatic skin by external periodic
                                  force: a mathematical model  . . . . . . 485--494
               Yongzhen Pei and   
                Lansun Chen and   
              Qingrui Zhang and   
                    Changguo Li   Extinction and permanence of one-prey
                                  multi-predators of Holling type II
                                  function response system with impulsive
                                  biological control . . . . . . . . . . . 495--503
                J. Krishnan and   
                 P. A. Iglesias   A modelling framework describing the
                                  enzyme regulation of membrane lipids
                                  underlying gradient perception in
                                  Dictyostelium cells II: Input-output
                                  analysis . . . . . . . . . . . . . . . . 504--520
               Ugo Bastolla and   
        Michael Lässig and   
        Susanna C. Manrubia and   
              Angelo Valleriani   Biodiversity in model ecosystems, I:
                                  coexistence conditions for competing
                                  species  . . . . . . . . . . . . . . . . 521--530
               Ugo Bastolla and   
        Michael Lässig and   
        Susanna C. Manrubia and   
              Angelo Valleriani   Biodiversity in model ecosystems, II:
                                  species assembly and food web structure  531--539
          Kristjan Plaetzer and   
          S. Randall Thomas and   
             Renate Falkner and   
                 Gernot Falkner   The microbial experience of
                                  environmental phosphate fluctuations. An
                                  essay on the possibility of putting
                                  intentions into cell biochemistry  . . . 540--554
                  Xuan Xiao and   
              Shihuang Shao and   
             Yongsheng Ding and   
              Zhengde Huang and   
              Xiaojing Chen and   
                  Kuo-Chen Chou   An application of gene comparative image
                                  for predicting the effect on replication
                                  ratio by HBV virus gene missense
                                  mutation . . . . . . . . . . . . . . . . 555--565
               Tom Lenaerts and   
                Bart Jansen and   
                 Karl Tuyls and   
                 Bart De Vylder   The evolutionary language game: An
                                  orthogonal approach  . . . . . . . . . . 566--582
               Satoshi Kanazawa   Big and tall parents have more sons:
                                  Further generalizations of the
                                  Trivers--Willard hypothesis  . . . . . . 583--590
          Satoshi Takahashi and   
                    Michio Hori   Coexistence of competing species by the
                                  oscillation of polymorphisms . . . . . . 591--596
                      Anonymous   Author Index . . . . . . . . . . . . . . 597--598
                      Anonymous   Subject Index  . . . . . . . . . . . . . 599--603
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 451--604 (21 August 2005)  . . . . ??


Journal of Theoretical Biology
Volume 236, Number 1, September 7, 2005

        M. Bahman Bahramian and   
                   Helmut Zarbl   Erratum to ``GENE impedence: a natural
                                  process for control of gene expression
                                  and the origin of RNA interference'':
                                  [J. Theor. Biol. \bf 233 (2005)
                                  301--314]  . . . . . . . . . . . . . . . 1--1
                  Ichiji Tasaki   Repetitive abrupt structural changes in
                                  polyanionic gels: a comparison with
                                  analogous processes in nerve fibers  . . 2--11
 György Károlyi and   
      Zoltán Neufeld and   
        István Scheuring   Rock-scissors-paper game in a chaotic
                                  flow: The effect of dispersion on the
                                  cyclic competition of microorganisms . . 12--20
           John H. Schwacke and   
               Eberhard O. Voit   Computation and analysis of
                                  time-dependent sensitivities in
                                  Generalized Mass Action systems  . . . . 21--38
                Rob DeConde and   
               Peter S. Kim and   
                 Doron Levy and   
                   Peter P. Lee   Post-transplantation dynamics of the
                                  immune response to chronic myelogenous
                                  leukemia . . . . . . . . . . . . . . . . 39--59
         A. St Clair Gibson and   
             J. H. Goedecke and   
               Y. X. Harley and   
                L. J. Myers and   
              M. I. Lambert and   
              T. D. Noakesa and   
                  E. V. Lambert   Metabolic setpoint control mechanisms in
                                  different physiological systems at rest
                                  and during exercise  . . . . . . . . . . 60--72
           Julian F. V. Vincent   Deconstructing the design of a
                                  biological material  . . . . . . . . . . 73--78
                C. Pagnutti and   
                   M. Anand and   
                      M. Azzouz   Lattice geometry, gap formation and
                                  scale invariance in forests  . . . . . . 79--87
                 Amos Panet and   
                Efrat Braun and   
              Alik Honigman and   
                 Israel Steiner   Involvement of cellular death signals in
                                  the reactivation of herpes simplex virus
                                  type 1 and lambda bacteriophage from a
                                  latent state . . . . . . . . . . . . . . 88--94
               Rosendo A. Yunes   The evolution of the human mind and
                                  logic-mathematics structures . . . . . . 95--110
       M. Gabriela M. Gomes and   
              Lisa J. White and   
               Graham F. Medley   The reinfection threshold  . . . . . . . 111--113
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--114 (7 September 2005)  . . . . ??

Journal of Theoretical Biology
Volume 236, Number 2, September 21, 2005

         M. Schulin-Zeuthen and   
                J. B. Lopes and   
                 E. Kebreab and   
          D. M. S. S. Vitti and   
              A. L. Abdalla and   
             M. DeL. Haddad and   
             L. A. Crompton and   
                      J. France   Effects of phosphorus intake on
                                  phosphorus flow in growing pigs:
                                  Application and comparison of two models 115--125
                 Geoff Wild and   
                Peter D. Taylor   A kin-selection approach to the
                                  resolution of sex-ratio conflict between
                                  mates  . . . . . . . . . . . . . . . . . 126--136
          Jane M. Heffernan and   
                  Lindi M. Wahl   Monte Carlo estimates of natural
                                  variation in HIV infection . . . . . . . 137--153
              P. D. Shipman and   
                   A. C. Newell   Polygonal planforms and phyllotaxis on
                                  plants . . . . . . . . . . . . . . . . . 154--197
               M. R. Miller and   
                   A. White and   
                       M. Boots   The evolution of host resistance:
                                  Tolerance and control as distinct
                                  strategies . . . . . . . . . . . . . . . 198--207
        Mohammed Zeineddine and   
           Vincent A. A. Jansen   The evolution of stability in a
                                  competitive system . . . . . . . . . . . 208--215
                Peter Clote and   
           Leszek Gasieniec and   
             Roman Kolpakov and   
         Evangelos Kranakis and   
                  Danny Krizanc   On realizing shapes in the theory of RNA
                                  neutral networks . . . . . . . . . . . . 216--227
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 115--228 (21 September 2005) . . . ??

Journal of Theoretical Biology
Volume 236, Number 3, October 7, 2005

            Matthew V. Thompson   Scaling phloem transport: Elasticity and
                                  pressure-concentration waves . . . . . . 229--241
           Daniel M. Keenan and   
       Somesh Chattopadhyay and   
           Johannes D. Veldhuis   Composite model of time-varying
                                  appearance and disappearance of
                                  neurohormone pulse signals in blood  . . 242--255
                 Hartmut Kuthan   Temporal fluctuation of nuclear pore
                                  complex localization by single diffusing
                                  mRNP complexes . . . . . . . . . . . . . 256--262
          Stefan Van Dongen and   
             Willem Talloen and   
                       Luc Lens   High variation in developmental
                                  instability under non-normal
                                  developmental error: a Bayesian
                                  perspective  . . . . . . . . . . . . . . 263--275
               Amit Huppert and   
              Bernd Blasius and   
               Ronen Olinky and   
                     Lewi Stone   A model for seasonal phytoplankton
                                  blooms . . . . . . . . . . . . . . . . . 276--290
              Atsushi Mochizuki   An analytical study of the number of
                                  steady states in gene regulatory
                                  networks . . . . . . . . . . . . . . . . 291--310
             Mohammad Haeri and   
              Yashar Sarbaz and   
           Shahriar Gharibzadeh   Modeling the Parkinson's tremor and its
                                  treatments . . . . . . . . . . . . . . . 311--322
                   L. Dupuy and   
                T. Fourcaud and   
                  A. Stokes and   
                      F. Danjon   A density-based approach for the
                                  modelling of root architecture:
                                  application to Maritime pine
                                  (\bionamePinus pinaster Ait.) root
                                  systems  . . . . . . . . . . . . . . . . 323--334
                    Wei Wei and   
               Stephen M. Krone   Spatial invasion by a mutant pathogen    335--348
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 229--348 (7 October 2005)  . . . . ??

Journal of Theoretical Biology
Volume 236, Number 4, October 21, 2005

            Wolfgang Marwan and   
           Arumugam Sujatha and   
           Christine Starostzik   Reconstructing the regulatory network
                                  controlling commitment and sporulation
                                  in \bionamePhysarum polycephalum based
                                  on hierarchical Petri Net modelling and
                                  simulation . . . . . . . . . . . . . . . 349--365
        Francois G. Feugier and   
               A. Mochizuki and   
                       Y. Iwasa   Self-organization of the vascular system
                                  in plant leaves: Inter-dependent
                                  dynamics of auxin flux and carrier
                                  proteins . . . . . . . . . . . . . . . . 366--375
              Arancha Casal and   
                 Cenk Sumen and   
           Timothy E. Reddy and   
              Mark S. Alber and   
                   Peter P. Lee   Agent-based modeling of the context
                                  dependency in T cell recognition . . . . 376--391
          Lee Alan Dugatkin and   
             Michael Perlin and   
                   Ronald Atlas   Antibiotic resistance and the evolution
                                  of group-beneficial traits. II: a
                                  metapopulation model . . . . . . . . . . 392--396
         Markku J. Lampinen and   
                  Tuula Noponen   Electric dipole theory and
                                  thermodynamics of actomyosin molecular
                                  motor in muscle contraction  . . . . . . 397--421
               J. Barral P. and   
                 L. Cantini and   
                   A. Hasmy and   
          J. Jiménez and   
                     A. Marcano   Correlation between strand asymmetry and
                                  phylogeny in mitochondrial DNA . . . . . 422--426
      János Izsák   A pilot study on the frequency structure
                                  of histological neoplasm diagnoses in
                                  rats . . . . . . . . . . . . . . . . . . 427--437
                  Tong Zhou and   
              J. M. Carlson and   
                     John Doyle   Evolutionary dynamics and highly
                                  optimized tolerance  . . . . . . . . . . 438--447
              Nicolas Foray and   
         Anne-Marie Charvet and   
             David Duchemin and   
           Vincent Favaudon and   
               Daniel Lavalette   The repair rate of radiation-induced DNA
                                  damage: a stochastic interpretation
                                  based on the Gamma function  . . . . . . 448--458
                      Anonymous   Author Index . . . . . . . . . . . . . . EX459--EX460
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 349--458 (21 October 2005) . . . . ??
                      Anonymous   Subject Index  . . . . . . . . . . . . . EX461--EX464


Journal of Theoretical Biology
Volume 237, Number 1, November 7, 2005

            Peter Schofield and   
              Mark Chaplain and   
                Stephen Hubbard   Evolution of searching and life history
                                  characteristics in individual-based
                                  models of host-parasitoid-microbe
                                  associations . . . . . . . . . . . . . . 1--16
              Noah A. Rosenberg   A sharp minimum on the mean number of
                                  steps taken in adaptive walks  . . . . . 17--22
         Thorsten Koslowski and   
                Fabian Zehender   Towards a quantitative understanding of
                                  horizontal gene transfer: a kinetic
                                  model  . . . . . . . . . . . . . . . . . 23--29
            Steffen Liepelt and   
              Jan A. Freund and   
      Lutz Schimansky-Geier and   
           Alexander Neiman and   
               David F. Russell   Information processing in noisy burster
                                  models of sensory neurons  . . . . . . . 30--40
                Peter Ruoff and   
     Melinda K. Christensen and   
                Vijay K. Sharma   PER/TIM-mediated amplification, gene
                                  dosage effects and temperature
                                  compensation in an interlocking-feedback
                                  loop model of the Drosophila circadian
                                  clock  . . . . . . . . . . . . . . . . . 41--57
                 Sandip Kar and   
                Deb Shankar Ray   Sustained simultaneous glycolytic and
                                  insulin oscillations in $ \beta $-cells  58--66
          Tobias van Kooten and   
    André M. de Roos and   
                Lennart Persson   Bistability and an Allee effect as
                                  emergent consequences of stage-specific
                                  predation  . . . . . . . . . . . . . . . 67--74
                 C. Scapoli and   
                   H. Goebl and   
                  S. Sobota and   
                E. Mamolini and   
      A. Rodriguez-Larralde and   
                      I. Barrai   Surnames and dialects in France:
                                  Population structure and cultural
                                  evolution  . . . . . . . . . . . . . . . 75--86
              Mathieu Joron and   
                      Yoh Iwasa   The evolution of a Müllerian mimic in a
                                  spatially distributed community  . . . . 87--103
               Hiroto Shoji and   
                      Yoh Iwasa   Labyrinthine versus straight-striped
                                  patterns generated by two-dimensional
                                  Turing systems . . . . . . . . . . . . . 104--116
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--116 (7 November 2005) . . . . . ??

Journal of Theoretical Biology
Volume 237, Number 2, November 21, 2005

            Caroline Colijn and   
              Michael C. Mackey   A mathematical model of hematopoiesis
                                  --- I. Periodic chronic myelogenous
                                  leukemia . . . . . . . . . . . . . . . . 117--132
            Caroline Colijn and   
              Michael C. Mackey   A mathematical model of hematopoiesis:
                                  II. Cyclical neutropenia . . . . . . . . 133--146
                G. B. Deane and   
                 M. Dale Stokes   A quantitative model for flow-induced
                                  bioluminescence in dinoflagellates . . . 147--169
                 Andy Ruina and   
         John E. A. Bertram and   
               Manoj Srinivasan   A collisional model of the energetic
                                  cost of support work qualitatively
                                  explains leg sequencing in walking and
                                  galloping, pseudo-elastic leg behavior
                                  in running and the walk-to-run
                                  transition . . . . . . . . . . . . . . . 170--192
            Joe Yuichiro Wakano   Evolution of extraordinary female-biased
                                  sex ratios: The optimal schedule of sex
                                  ratio in local mate competition  . . . . 193--202
   Hamed Shateri Najafabadi and   
              Hani Goodarzi and   
             Noorossadat Torabi   Optimality of codon usage in
                                  \bionameEscherichia coli due to load
                                  minimization . . . . . . . . . . . . . . 203--209
      Jürg Bähler and   
                   Sasa Svetina   A logical circuit for the regulation of
                                  fission yeast growth modes . . . . . . . 210--218
              Massimo Di Giulio   Structuring of the genetic code took
                                  place at acidic pH . . . . . . . . . . . 219--226
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 117--226 (21 November 2005)  . . . ??

Journal of Theoretical Biology
Volume 237, Number 3, December 7, 2005

           Gillian E. Yates and   
                     Mark Broom   A stochastic model of the distribution
                                  of unequal competitors between resource
                                  patches  . . . . . . . . . . . . . . . . 227--237
                Anna Fukshansky   Selection, mutation and sexual
                                  reproduction in an infinite haploid
                                  population with a genome of finite
                                  length . . . . . . . . . . . . . . . . . 238--244
                    Osnat Yaniv   An asymmetric parental investment
                                  conflict with continuous strategy sets   245--256
                Giora Enden and   
               You H. Zhang and   
         José C. Merchuk   A model of the dynamics of insect cell
                                  infection at low multiplicity of
                                  infection  . . . . . . . . . . . . . . . 257--264
             Mario W. Gomes and   
                  Andy L. Ruina   A five-link 2D brachiating ape model
                                  with life-like zero-energy-cost motions  265--278
               B. K. Dellen and   
               M. J. Barber and   
               M. L. Ristig and   
               J. Hescheler and   
                   H. Sauer and   
                  M. Wartenberg   [Ca$^{2+}$] oscillations in a model of
                                  energy-dependent Ca$^{2+}$ uptake by the
                                  endoplasmic reticulum  . . . . . . . . . 279--290
    Anastassia M. Makarieva and   
         Victor G. Gorshkov and   
                    Bai-Lian Li   Revising the distributive networks
                                  models of West, Brown and Enquist (1997)
                                  and Banavar, Maritan and Rinaldo (1999):
                                  Metabolic inequity of living tissues
                                  provides clues for the observed
                                  allometric scaling rules . . . . . . . . 291--301
Svetlana Bunimovich-Mendrazitsky and   
                     Lewi Stone   Modeling polio as a disease of
                                  development  . . . . . . . . . . . . . . 302--315
           Gheorghe Craciun and   
              Anthony Brown and   
                 Avner Friedman   A dynamical system model of
                                  neurofilament transport in axons . . . . 316--322
                  K. Michaelian   Thermodynamic stability of ecosystems    323--335
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 227--336 (7 December 2005) . . . . ??

Journal of Theoretical Biology
Volume 237, Number 4, December 21, 2005

               Steve Alpern and   
                 Diane Reyniers   Strategic mating with common preferences 337--354
       Martin Willensdorfer and   
                Martin A. Nowak   Mutation in evolutionary games can
                                  increase average fitness at equilibrium  355--362
            Jacek Mie\ckisz and   
             Tadeusz Platkowski   Population dynamics with a stable
                                  efficient equilibrium  . . . . . . . . . 363--368
             O. V. Aslanidi and   
              R. H. Clayton and   
              J. L. Lambert and   
                   A. V. Holden   Dynamical and cellular
                                  electrophysiological mechanisms of ECG
                                  changes during ischaemia . . . . . . . . 369--381
            R. V. Overgaard and   
            J. E. Henriksen and   
                      H. Madsen   Insights to the minimal model of insulin
                                  secretion through a mean-field beta cell
                                  model  . . . . . . . . . . . . . . . . . 382--389
        Filippo Castiglione and   
            Federico Toschi and   
          Massimo Bernaschi and   
                Sauro Succi and   
          Roberta Benedetti and   
          Brunangelo Falini and   
                 Arcangelo Liso   Computational modeling of the immune
                                  response to tumor antigens . . . . . . . 390--400
             Cheol-Min Ghim and   
               Kwang-Il Goh and   
                 Byungnam Kahng   Lethality and synthetic lethality in the
                                  genome-wide metabolic network of
                                  \bionameEscherichia coli . . . . . . . . 401--411
            Matthijs van Veelen   On the use of the Price equation . . . . 412--426
                  Paul Brazhnik   Inferring gene networks from
                                  steady-state response to single-gene
                                  perturbations  . . . . . . . . . . . . . 427--440
                      Anonymous   Author Index . . . . . . . . . . . . . . EX441--EX442
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 337--440 (21 December 2005)  . . . ??
                      Anonymous   Subject Index  . . . . . . . . . . . . . EX443--EX446


Journal of Theoretical Biology
Volume 238, Number 1, January 7, 2006

             Hiroshi C. Ito and   
                Takashi Ikegami   Food-web formation with recursive
                                  evolutionary branching . . . . . . . . . 1--10
                Yoshiyuki Usami   Theoretical study on the body form and
                                  swimming pattern of Anomalocaris based
                                  on hydrodynamic simulation . . . . . . . 11--17
             Andrew Morozov and   
          Sergei Petrovskii and   
                    Bai-Lian Li   Spatiotemporal complexity of patchy
                                  invasion in a predator-prey system with
                                  the Allee effect.  . . . . . . . . . . . 18--35
                 A. Bannink and   
                   J. Kogut and   
                J. Dijkstra and   
                  J. France and   
                 E. Kebreab and   
           A. M. Van Vuuren and   
                    S. Tamminga   Estimation of the stoichiometry of
                                  volatile fatty acid production in the
                                  rumen of lactating cows  . . . . . . . . 36--51
              Bernard Jeune and   
            Denis Barabé   A stochastic approach to phyllotactic
                                  patterns analysis  . . . . . . . . . . . 52--59
          Dorothee von Laer and   
         Susanne Hasselmann and   
               Klaus Hasselmann   Impact of gene-modified T cells on HIV
                                  infection dynamics . . . . . . . . . . . 60--77
                Sutirth Dey and   
            Sugat Dabholkar and   
                  Amitabh Joshi   The effect of migration on
                                  metapopulation stability is
                                  qualitatively unaffected by demographic
                                  and spatial heterogeneity  . . . . . . . 78--84
               Yue-Lan Wang and   
                     Ju Bao and   
                    Yan Sun and   
                       Jie Yang   Energy and structural analysis of double
                                  nucleic acid triplets  . . . . . . . . . 85--103
         Michael A. Fishman and   
                     Lewi Stone   Trade up polygyny and breeding synchrony
                                  in avian populations . . . . . . . . . . 104--110
Patrick Felix Oliver Lindner and   
                 Bernd Hitzmann   Experimental design for optimal
                                  parameter estimation of an enzyme
                                  kinetic process based on the analysis of
                                  the Fisher information matrix  . . . . . 111--123
   Emmanouil D. Karagiannis and   
            Aleksander S. Popel   Distinct modes of collagen type I
                                  proteolysis by matrix metalloproteinase
                                  (MMP) 2 and membrane type I MMP during
                                  the migration of a tip endothelial cell:
                                  Insights from a computational model  . . 124--145
               Yuri Mansury and   
               Mark Diggory and   
            Thomas S. Deisboeck   Evolutionary game theory in an
                                  agent-based brain tumor model: Exploring
                                  the `Genotype-Phenotype' link  . . . . . 146--156
              Dominique Chu and   
              Jonathan Rowe and   
                Hoong-Chien Lee   Evaluation of the current models for the
                                  evolution of bacterial DNA uptake signal
                                  sequences  . . . . . . . . . . . . . . . 157--166
                    Pierre Wong   The behavior of the human erythrocyte as
                                  an imperfect osmometer: a hypothesis . . 167--171
                Yu-Dong Cai and   
               Kai-Yan Feng and   
                Wen-Cong Lu and   
                  Kuo-Chen Chou   Using LogitBoost classifier to predict
                                  protein structural classes . . . . . . . 172--176
           S. Bhattacharyya and   
             D. K. Bhattacharya   Pest control through viral disease:
                                  Mathematical modeling and analysis . . . 177--197
             Michael B. Bonsall   The evolution of anisogamy: The adaptive
                                  significance of damage, repair and
                                  mortality  . . . . . . . . . . . . . . . 198--210
        Sharon R. Bullimore and   
                 Jeremy F. Burn   Consequences of forward translation of
                                  the point of force application for the
                                  mechanics of running . . . . . . . . . . 211--219
José A. García and   
Luis E. Soto-Ramírez and   
             Germinal Cocho and   
           Tzipe Govezensky and   
           Marco V. José   HIV-1 dynamics at different time scales
                                  under antiretroviral therapy . . . . . . 220--229
  Ramón Hegedüs and   
 Ákos Horváth and   
    Gábor Horváth   Why do dusk-active cockchafers detect
                                  polarization in the green? The
                                  polarization vision in Melolontha
                                  melolontha is tuned to the high
                                  polarized intensity of downwelling light
                                  under canopies during sunset . . . . . . 230--244
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--244 (7 January 2006)  . . . . . ??

Journal of Theoretical Biology
Volume 238, Number 2, January 21, 2006

            Harold P. de Vladar   Density-dependence as a size-independent
                                  regulatory mechanism . . . . . . . . . . 245--256
              Mark L. Field and   
                  Omar Khan and   
         Jayasimha Abbaraju and   
                Joseph F. Clark   Functional compartmentation of glycogen
                                  phosphorylase with creatine kinase and
                                  Ca$^{2+}$ ATPase in skeletal muscle  . . 257--268
        Paulo F. F. Almeida and   
             Frederik W. Wiegel   A simple theory of peptide interactions
                                  on a membrane surface: Excluded volume
                                  and entropic order . . . . . . . . . . . 269--278
                   H. Allen Orr   The distribution of fitness effects
                                  among beneficial mutations in Fisher's
                                  geometric model of adaptation  . . . . . 279--285
               Robert W. Finkel   Model for energy oscillations in cells   286--289
           Gerhard A. Holzapfel   Determination of material models for
                                  arterial walls from uniaxial extension
                                  tests and histological structure . . . . 290--302
   D.-E. Bettendorff-Bakman and   
                  P. Schmid and   
         P. P. Lunkenheimer and   
                    P. Niederer   A finite element study relating to the
                                  rapid filling phase of the human
                                  ventricles . . . . . . . . . . . . . . . 303--316
            Edward E. Allen and   
        Jacquelyn S. Fetrow and   
            Larry W. Daniel and   
             Stan J. Thomas and   
                  David J. John   Algebraic dependency models of protein
                                  signal transduction networks from
                                  time-series data . . . . . . . . . . . . 317--330
            R. Cassia-Moura and   
                 M. A. F. Gomes   A crumpled surface having transverse
                                  attractive interactions as a simplified
                                  model with biological significance . . . 331--339
         Kelvin J. Richards and   
            Stuart J. Brentnall   The impact of diffusion and stirring on
                                  the dynamics of interacting populations  340--347
           Tomasz Lipniacki and   
              Pawe\l Paszek and   
     Anna Marciniak-Czochra and   
           Allan R. Brasier and   
                   Marek Kimmel   Transcriptional stochasticity in gene
                                  expression . . . . . . . . . . . . . . . 348--367
            Ryan Zurakowski and   
                 Andrew R. Teel   A model predictive control based
                                  scheduling method for HIV therapy  . . . 368--382
               William H. James   Possible constraints on adaptive
                                  variation in sex ratio at birth in
                                  humans and other primates  . . . . . . . 383--394
                Yu-Dong Cai and   
                  Kuo-Chen Chou   Predicting membrane protein type by
                                  functional domain composition and
                                  pseudo-amino acid composition  . . . . . 395--400
             A. G. Rossberg and   
                 H. Matsuda and   
                 T. Amemiya and   
                        K. Itoh   Some properties of the speciation model
                                  for food-web structure --- Mechanisms
                                  for degree distributions and intervality 401--415
             Orkun S. Soyer and   
      Marcel Salathé and   
           Sebastian Bonhoeffer   Signal transduction networks: Topology,
                                  response and biochemical processes . . . 416--425
                 L. A. Bach and   
                  T. Helvik and   
             F. B. Christiansen   The evolution of $n$-player
                                  cooperation-threshold games and ESS
                                  bifurcations . . . . . . . . . . . . . . 426--434
               Shun-Hui Liu and   
                   Song Sun and   
                    Bo-Ping Han   Viewing DVM via general behaviors of
                                  zooplankton: a way bridging the success
                                  of individual and population . . . . . . 435--448
                     C. Luo and   
                J. W. Clark and   
               T. A. Heming and   
                      A. Bidani   A macrophage cell model for pH and
                                  volume regulation  . . . . . . . . . . . 449--463
                 Michiko Nosaka   Geometrical correspondence identified
                                  and a new interaction unit suggested in
                                  striated muscle  . . . . . . . . . . . . 464--473
                  Alona Ben-Tal   Simplified models for gas exchange in
                                  the human lungs  . . . . . . . . . . . . 474--495
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 245--496 (21 January 2006) . . . . ??

Journal of Theoretical Biology
Volume 238, Number 3, February 7, 2006

                John Vandermeer   Omnivory and the stability of food webs  497--504
                 P. Rothnie and   
                  D. Kabaso and   
                  P. R. Hof and   
                B. I. Henry and   
                   S. L. Wearne   Functionally relevant measures of
                                  spatial complexity in neuronal dendritic
                                  arbors . . . . . . . . . . . . . . . . . 505--526
                  Adam Tofilski   Influence of caste polyethism on
                                  longevity of workers in social insect
                                  colonies . . . . . . . . . . . . . . . . 527--531
                Olivier Cinquin   Fast-tracking morphogen diffusion  . . . 532--540
                    Alan Grafen   Optimization of inclusive fitness  . . . 541--563
           G. Caron-Lormier and   
               J. P. Masson and   
           N. Ménard and   
                   J. S. Pierre   A branching process, its application in
                                  biology: Influence of demographic
                                  parameters on the social structure in
                                  mammal groups  . . . . . . . . . . . . . 564--574
                   D. Bauer and   
                   R. Grebe and   
                   A. Ehrlacher   A new method to model change in
                                  cutaneous blood flow due to mechanical
                                  skin irritation: Part I: Comparison
                                  between experimental and numerical data  575--587
                   D. Bauer and   
                   R. Grebe and   
                   A. Ehrlacher   A new method to model change in
                                  cutaneous blood flow due to mechanical
                                  skin irritation: Part II: Parameter
                                  identification procedure . . . . . . . . 588--596
               Pierre Auger and   
                Bob W. Kooi and   
   Rafael Bravo de la Parra and   
       Jean-Christophe Poggiale   Bifurcation analysis of a predator-prey
                                  model with predators using hawk and dove
                                  tactics  . . . . . . . . . . . . . . . . 597--607
               Otto Schmidt and   
              Andreas Schreiber   Integration of cell adhesion reactions
                                  --- a balance of forces? . . . . . . . . 608--615
                 D. A. Rand and   
              B. V. Shulgin and   
              J. D. Salazar and   
                   A. J. Millar   Uncovering the design principles of
                                  circadian clocks: Mathematical analysis
                                  of flexibility and evolutionary goals    616--635
                     Jun Nishii   An analytical estimation of the energy
                                  cost for legged locomotion . . . . . . . 636--645
                  Michio Kondoh   Does foraging adaptation create the
                                  positive complexity-stability
                                  relationship in realistic food-web
                                  structure? . . . . . . . . . . . . . . . 646--651
                   Pali Sen and   
                     Denis Bell   A model for the interaction of two
                                  chemicals  . . . . . . . . . . . . . . . 652--656
   Hamed Shateri Najafabadi and   
              Hani Goodarzi and   
         Noorossadat Torabi and   
     Setareh Sadat Banihosseini   Applying a neural network to predict the
                                  thermodynamic parameters for an expanded
                                  nearest-neighbor model . . . . . . . . . 657--665
            Eun-Hyoung Park and   
            Dominique M. Durand   Role of potassium lateral diffusion in
                                  non-synaptic epilepsy: a computational
                                  study  . . . . . . . . . . . . . . . . . 666--682
             Shuji Ishihara and   
                Kunihiko Kaneko   Turing pattern with proportion
                                  preservation . . . . . . . . . . . . . . 683--693
                    N. G. Cogan   Effects of persister formation on
                                  bacterial response to dosing . . . . . . 694--703
                  Steven Sevush   Single-neuron theory of consciousness    704--725
               Anne Kupczok and   
                 Peter Dittrich   Determinants of simulated RNA evolution  726--735
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 497--736 (7 February 2006) . . . . ??

Journal of Theoretical Biology
Volume 238, Number 4, February 21, 2006

               A. P. Quayle and   
                     S. Bullock   Modelling the evolution of genetic
                                  regulatory networks  . . . . . . . . . . 737--753
            Catherine Foley and   
             Samuel Bernard and   
              Michael C. Mackey   Cost-effective G-CSF therapy strategies
                                  for cyclical neutropenia: Mathematical
                                  modelling based hypotheses . . . . . . . 754--763
              Bala Sundaram and   
             Andrew C. Poje and   
            Richard R. Veit and   
                 Herve Nganguia   Acoustical dead zones and the spatial
                                  aggregation of whale strandings  . . . . 764--770
        Chaitanya A. Athale and   
            Thomas S. Deisboeck   The effects of EGF-receptor density on
                                  multiscale tumor growth patterns . . . . 771--779
              Akiko Ohtsuki and   
                   Akira Sasaki   Epidemiology and disease-control under
                                  gene-for-gene plant-pathogen interaction 780--794
                    Osnat Yaniv   Properties of a mixed ESS candidate in
                                  continuous strategy sets . . . . . . . . 795--804
              Hsieh Fushing and   
            Chii-Ruey Hwang and   
              Hou-Cheng Lee and   
               Yen-Chiu Lan and   
                 Shwu-Bin Horng   Testing and mapping non-stationarity in
                                  animal behavioral processes: a case
                                  study on an individual female bean
                                  weevil . . . . . . . . . . . . . . . . . 805--816
               R. P. Araujo and   
              D. L. S. McElwain   The role of mechanical host-tumour
                                  interactions in the collapse of tumour
                                  blood vessels and tumour growth dynamics 817--827
                Axel Kowald and   
               Hans Lehrach and   
                     Edda Klipp   Alternative pathways as mechanism for
                                  the negative effects associated with
                                  overexpression of superoxide dismutase   828--840
            L. G. de Pillis and   
                      W. Gu and   
               A. E. Radunskaya   Mixed immunotherapy and chemotherapy of
                                  tumors: modeling, applications and
                                  biological interpretations . . . . . . . 841--862
                  Kevin C. Chen   Effects of tissue trauma on the
                                  characteristics of microdialysis
                                  zero-net-flux method sampling
                                  neurotransmitters  . . . . . . . . . . . 863--881
                  Lu Gaohua and   
                Hidenori Kimura   A mathematical model of intracranial
                                  pressure dynamics for brain hypothermia
                                  treatment  . . . . . . . . . . . . . . . 882--900
Agnieszka Grabska-Barwi\'nska and   
           Jaroslaw Zygierewicz   A model of event-related EEG
                                  synchronization changes in beta and
                                  gamma frequency bands  . . . . . . . . . 901--913
            Lee G. Pedersen and   
             Lee Bartolotti and   
                      Leping Li   Deuterium and its role in the machinery
                                  of evolution . . . . . . . . . . . . . . 914--918
David G. Mendoza-Cózatl and   
   Rafael Moreno-Sánchez   Control of glutathione and phytochelatin
                                  synthesis under cadmium stress. Pathway
                                  modeling for plants  . . . . . . . . . . 919--936
         Simon H. Tindemans and   
               Norbert Kern and   
                 Bela M. Mulder   The diffusive vesicle supply center
                                  model for tip growth in fungal hyphae    937--948
       Juan-Carlos Letelier and   
         Jorge Soto-Andrade and   
Flavio Guíñez Abarzúa and   
       Athel Cornish-Bowden and   
María Luz Cárdenas   Organizational invariance and metabolic
                                  closure: Analysis in terms of $ (M, R) $
                                  systems  . . . . . . . . . . . . . . . . 949--961
                  D. Schley and   
            R. Carare-Nnadi and   
               C. P. Please and   
                V. H. Perry and   
                   R. O. Weller   Mechanisms to explain the reverse
                                  perivascular transport of solutes out of
                                  the brain  . . . . . . . . . . . . . . . 962--974
                      Anonymous   Author Index . . . . . . . . . . . . . . EX975--EX977
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 737--974 (21 February 2006)  . . . ??
                      Anonymous   Subject Index  . . . . . . . . . . . . . EX978--EX985


Journal of Theoretical Biology
Volume 239, Number 1, March 7, 2006

         Daniel J. Hruschka and   
                 Joseph Henrich   Friendship, cliquishness, and the
                                  emergence of cooperation . . . . . . . . 1--15
                 Wilbert Gamble   Atherosclerosis: The carbonic anhydrase,
                                  carbon dioxide, calcium concerted theory 16--21
          Renato Casagrandi and   
                   Marino Gatto   The intermediate dispersal principle in
                                  spatially explicit metapopulations . . . 22--32
                John Fricks and   
               Hongyun Wang and   
              Timothy C. Elston   A numerical algorithm for investigating
                                  the role of the motor-cargo linkage in
                                  molecular motor-driven transport . . . . 33--48
              Julio Aracena and   
   Mauricio González and   
    Alejandro Zuñiga and   
            Marco A. Mendez and   
       Verónica Cambiazo   Regulatory network for cell shape
                                  changes during Drosophila ventral furrow
                                  formation  . . . . . . . . . . . . . . . 49--62
                    Wen Zhu and   
               Stephen Freeland   The standard genetic code enhances
                                  adaptive evolution of proteins . . . . . 63--70
              Kam-Keung Lau and   
            Stephen Roberts and   
                  Dora Biro and   
              Robin Freeman and   
              Jessica Meade and   
                   Tim Guilford   An edge-detection approach to
                                  investigating pigeon navigation  . . . . 71--78
     Jörgen W. Weibull and   
             Marcus Salomonsson   Natural selection and social preferences 79--92
            Gottfried Sachs and   
       Mochammad Agoes Moelyadi   Effect of slotted wing tips on yawing
                                  moment characteristics . . . . . . . . . 93--100
          Kunichika Tsumoto and   
          Tetsuya Yoshinaga and   
               Hitoshi Iida and   
           Hiroshi Kawakami and   
                Kazuyuki Aihara   Bifurcations in a mathematical model for
                                  circadian oscillations of clock genes    101--122
     Michael W. J. Crosland and   
            John S. Scheibe and   
                     Nan-Yao Su   Soldier production strategy in lower
                                  termites: a simpler alternative
                                  hypothesis . . . . . . . . . . . . . . . 123--127
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--128 (7 March 2006)  . . . . . . ??

Journal of Theoretical Biology
Volume 239, Number 2, March, 2006

 Eörs Szathmáry and   
                   Mauro Santos   He would have deserved to live forever:
                                  John Maynard Smith (1920--2004)  . . . . 129--129
                   Joel R. Peck   Altruism, sex, and inbreeding when the
                                  genotype-phenotype map is additive . . . 130--140
       Fyodor A. Kondrashov and   
           Alexey S. Kondrashov   Role of selection in fixation of gene
                                  duplications . . . . . . . . . . . . . . 141--151
                   Y. Bello and   
                      D. Waxman   Near-periodic substitution and the
                                  genetic variance induced by
                                  environmental change . . . . . . . . . . 152--160
 Carlos López-Fanjul and   
  Almudena Fernández and   
                 Miguel A. Toro   The effect of genetic drift on the
                                  variance/covariance components generated
                                  by multilocus additive$ \times $
                                  additive epistatic systems . . . . . . . 161--171
               Sergey Gavrilets   The Maynard Smith model of sympatric
                                  speciation . . . . . . . . . . . . . . . 172--182
           Hannelore Brandt and   
                   Karl Sigmund   The good, the bad and the
                                  discriminator-Errors in direct and
                                  indirect reciprocity . . . . . . . . . . 183--194
           Christoph Hauert and   
           Franziska Michor and   
            Martin A. Nowak and   
                Michael Doebeli   Synergy and discounting of cooperation
                                  in social dilemmas . . . . . . . . . . . 195--202
                D. G. C. Harper   Maynard Smith: Amplifying the reasons
                                  for signal reliability . . . . . . . . . 203--209
          William P. Hanage and   
          Christophe Fraser and   
                Brian G. Spratt   The impact of homologous recombination
                                  on the generation of diversity in
                                  bacteria . . . . . . . . . . . . . . . . 210--219
              Noel H. Smith and   
             Kristin Kremer and   
          Jacqueline Inwald and   
                 James Dale and   
        Jeffrey R. Driscoll and   
          Stephen V. Gordon and   
         Dick van Soolingen and   
           R. Glyn Hewinson and   
             John Maynard Smith   Ecotypes of the Mycobacterium
                                  tuberculosis complex . . . . . . . . . . 220--225
        Eduardo P. C. Rocha and   
         John Maynard Smith and   
          Laurence D. Hurst and   
       Matthew T. G. Holden and   
          Jessica E. Cooper and   
              Noel H. Smith and   
                 Edward J. Feil   Comparisons of $ d N / d S $ are time
                                  dependent for closely related bacterial
                                  genomes  . . . . . . . . . . . . . . . . 226--235
               Eva Jablonka and   
                 Marion J. Lamb   The evolution of information in the
                                  major transitions  . . . . . . . . . . . 236--246
   José F. Fontanari and   
               Mauro Santos and   
     Eörs Szathmáry   Coexistence and error propagation in
                                  pre-biotic vesicle models: a group
                                  selection approach . . . . . . . . . . . 247--256
          Richard E. Michod and   
            Yannick Viossat and   
         Cristian A. Solari and   
            Mathilde Hurand and   
              Aurora M. Nedelcu   Life-history evolution and the origin of
                                  multicellularity . . . . . . . . . . . . 257--272
              Ross Cressman and   
             Josef Hofbauer and   
                   Frank Riedel   Stability of the replicator equation for
                                  a single species with a
                                  multi-dimensional continuous trait space 273--288
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Special Issue in Memory of John Maynard
                                  Smith  . . . . . . . . . . . . . . . . . ??

Journal of Theoretical Biology
Volume 239, Number 3, April 7, 2006

            Darren M. Green and   
             Istvan Z. Kiss and   
                 Rowland R. Kao   Parameterization of individual-based
                                  models: Comparisons with deterministic
                                  mean-field models  . . . . . . . . . . . 289--297
                 G. Carrero and   
              M. J. Hendzel and   
                    G. de Vries   Modelling the compartmentalization of
                                  splicing factors . . . . . . . . . . . . 298--312
                  J. Millor and   
           J. M. Amé and   
                  J. Halloy and   
               J. L. Deneubourg   Individual discrimination capability and
                                  collective decision-making . . . . . . . 313--323
                 Erich Bohl and   
                Peter Lancaster   Implementation of a Markov model for
                                  phylogenetic trees . . . . . . . . . . . 324--333
               D. G. Mallet and   
                L. G. De Pillis   A cellular automata model of
                                  tumor-immune system interactions . . . . 334--350
               Natalia Komarova   Stochastic modeling of drug resistance
                                  in cancer  . . . . . . . . . . . . . . . 351--366
               Takashi Kunisawa   Dichotomy of major bacterial phyla
                                  inferred from gene arrangement
                                  comparisons  . . . . . . . . . . . . . . 367--375
                Jing'an Cui and   
          Yasuhiro Takeuchi and   
                 Yasuhisa Saito   Spreading disease with transport-related
                                  infection  . . . . . . . . . . . . . . . 376--390
         Jayanth R. Banavar and   
                John Damuth and   
               Amos Maritan and   
                 Andrea Rinaldo   Comment on ``Revising the distributive
                                  networks models of West, Brown and
                                  Enquist (1997) and Banavar, Maritan and
                                  Rinaldo (1999): Metabolic inequity of
                                  living tissues provides clues for the
                                  observed allometric scaling rules'' by
                                  Makarieva, Gorshkov and Li . . . . . . . 391--393
    Anastassia M. Makarieva and   
         Victor G. Gorshkov and   
                    Bai-Lian Li   Distributive network model of Banavar,
                                  Damuth, Maritan and Rinaldo (2002):
                                  Critique and perspective . . . . . . . . 394--397
         Fumihide Shiraishi and   
                 Yuji Hatoh and   
                 Toshinori Irie   Corrigendum to ``An efficient method for
                                  calculation of dynamic logarithmic gains
                                  in biochemical systems theory'': [J.
                                  Theor. Biol. \bf 234 (2005) 79--85]  . . 398--399
               Yongzhen Pei and   
                Lansun Chen and   
              Qingrui Zhang and   
                    Changguo Li   Corrigendum to ``Extinction and
                                  permanence of one-prey multi-predators
                                  of Holling type II function response
                                  system with impulsive biological
                                  control'': [J. Theor. Biol. \bf 235
                                  (2005) 495--503] . . . . . . . . . . . . 400--400
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 289--400 (7 April 2006)  . . . . . ??

Journal of Theoretical Biology
Volume 239, Number 4, April 21, 2006

               Leonid Hanin and   
            Ollivier Hyrien and   
               Joel Bedford and   
                Andrei Yakovlev   A comprehensive stochastic model of
                                  irradiated cell populations in culture   401--416
       Michael A. Gilchrist and   
                 Andreas Wagner   A model of protein translation including
                                  codon bias, nonsense errors, and
                                  ribosome recycling . . . . . . . . . . . 417--434
            Hisashi Ohtsuki and   
                      Yoh Iwasa   The leading eight: Social norms that can
                                  maintain cooperation by indirect
                                  reciprocity  . . . . . . . . . . . . . . 435--444
     Lina María Ruiz and   
             Gemma Armengol and   
              Edwin Habeych and   
                   Sergio Orduz   A theoretical analysis of codon
                                  adaptation index of the Boophilus
                                  microplus bm86 gene directed to the
                                  optimization of a DNA vaccine  . . . . . 445--449
               Satoshi Kanazawa   Violent men have more sons: Further
                                  evidence for the generalized
                                  Trivers--Willard hypothesis (gTWH) . . . 450--459
        Daniel T. Blumstein and   
                 Avi Bitton and   
                   Jose DaVeiga   How does the presence of predators
                                  influence the persistence of
                                  antipredator behavior? . . . . . . . . . 460--468
                  Dashun Xu and   
                Zhilan Feng and   
          Linda J. S. Allen and   
              Robert K. Swihart   A spatially structured metapopulation
                                  model with patch dynamics  . . . . . . . 469--481
     Jirí Wackermann and   
                     Werner Ehm   The dual klepsydra model of internal
                                  time representation and time
                                  reproduction . . . . . . . . . . . . . . 482--493
                Yuhong Wang and   
                     Wei Li and   
             Tongtong Zhang and   
             Chuanfang Ding and   
                  Zhibin Lu and   
                 Nanye Long and   
               John P. Rose and   
              Bi-Cheng Wang and   
                      Dawei Lin   Reconstruction of ancient genome and
                                  gene order from complete microbial
                                  genome sequences . . . . . . . . . . . . 494--498
           Premananda Indic and   
                 Emery N. Brown   Characterizing the amplitude dynamics of
                                  the human core-temperature circadian
                                  rhythm using a stochastic-dynamic model  499--506
              Karla Vittori and   
     Grégoire Talbot and   
           Jacques Gautrais and   
  Vincent Fourcassié and   
Aluizio F. R. Araújo and   
                  Guy Theraulaz   Path efficiency of ant foraging trails
                                  in an artificial network . . . . . . . . 507--515
           Chaitanya Athale and   
               Yuri Mansury and   
            Thomas S. Deisboeck   Corrigendum to ``Simulating the impact
                                  of a molecular `decision-process' on
                                  cellular phenotype and multicellular
                                  patterns in brain tumors'': [J. Theor.
                                  Biol. \bf 233 (2005) 469--481] . . . . . 516--517
       M. Gabriela M. Gomes and   
              Lisa J. White and   
               Graham F. Medley   Erratum to ``The reinfection
                                  threshold'': [J. Theor. Biol. \bf 236
                                  (2005) 111--113] . . . . . . . . . . . . 518--518
                      Anonymous   Author Index . . . . . . . . . . . . . . 519--521
                      Anonymous   Subject Index  . . . . . . . . . . . . . 522--526
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 401--526 (21 April 2006) . . . . . ??


Journal of Theoretical Biology
Volume 240, Number 1, May 7, 2006

             Anthony Tongen and   
              Alain Goriely and   
                  Michael Tabor   Biomechanical model for appressorial
                                  design in Magnaporthe grisea . . . . . . 1--8
              Hong-Bin Shen and   
                   Jie Yang and   
                  Kuo-Chen Chou   Fuzzy KNN for predicting membrane
                                  protein types from pseudo-amino acid
                                  composition  . . . . . . . . . . . . . . 9--13
                  Yoko Sato and   
                    Hiromi Seno   A mathematical consideration for the
                                  optimal shell change of hermit crab  . . 14--23
           Atsushi Yamauchi and   
                 Norio Yamamura   Persistence conditions of symmetric
                                  social hybridogenesis in haplo-diploid
                                  hymenoptera  . . . . . . . . . . . . . . 24--31
          Preeda Meekangvan and   
           Alan A. Barhorst and   
           Thomas D. Burton and   
          Sankar Chatterjee and   
             Lawrence Schovanec   Nonlinear dynamical model and response
                                  of avian cranial kinesis . . . . . . . . 32--47
              Armin Rashidi and   
            Iman Khodarahmi and   
                Marc D. Feldman   Mathematical modeling of the course and
                                  prognosis of factitious disorders: a
                                  game-theoretic approach  . . . . . . . . 48--53
Tomás Alarcón and   
               Radu Marches and   
                  Karen M. Page   Mathematical models of the fate of
                                  lymphoma B cells after antigen receptor
                                  ligation with specific antibodies  . . . 54--71
              Andrea Harnos and   
           Jen\Ho Reiczigel and   
           Norbert Solymosi and   
            Gábor Vattay   Analysis of the effect of immunization
                                  in rabies time series  . . . . . . . . . 72--77
            Kunihiko Kaneko and   
               Chikara Furusawa   An evolutionary relationship between
                                  genetic variation and phenotypic
                                  fluctuation  . . . . . . . . . . . . . . 78--86
                 Xu-Qing Li and   
                   Ping Fan and   
                   Jinghong Fan   Polarity and hydrophobicity interactions
                                  in protein synthesis process . . . . . . 87--97
             Pietro G. Coen and   
                 Mark Wilks and   
       Martino Dall'Antonia and   
                 Michael Millar   Detection of multiple-strain carriers:
                                  The value of re-sampling . . . . . . . . 98--103
        Franziska Matthäus   Diffusion versus network models as
                                  descriptions for the spread of prion
                                  diseases in the brain  . . . . . . . . . 104--113
            Kazuhiko Masaka and   
                Takenori Takada   Floral sex ratio strategy in
                                  wind-pollinated monoecious species
                                  subject to wind-pollination efficiency
                                  and competitive sharing among male
                                  flowers as a game  . . . . . . . . . . . 114--125
               L. Giuggioli and   
                G. Abramson and   
               V. M. Kenkre and   
            R. R. Parmenter and   
                    T. L. Yates   Theory of home range estimation from
                                  displacement measurements of animal
                                  populations  . . . . . . . . . . . . . . 126--135
               Tomas Godula and   
             Hana Sevcikova and   
                 John H. Merkin   The emergence of wave emitting centres
                                  in an excitable medium . . . . . . . . . 136--148
           Joseph L. McClay and   
    Edwin J. C. G. van den Oord   Variance component analysis of
                                  polymorphic metabolic systems  . . . . . 149--159
                 Horacio Ortega   Some observations on the article
                                  ``Dynamic response of cancer under the
                                  influence of immunological activity and
                                  therapy''  . . . . . . . . . . . . . . . 160--161
        Harold P. de Vladar and   
       Jorge A. González   Dynamic response of cancer under the
                                  influence of immunological activity and
                                  therapy  . . . . . . . . . . . . . . . . 162--163
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--164 (7 May 2006)  . . . . . . . ??

Journal of Theoretical Biology
Volume 240, Number 2, May 21, 2006

             Thomas N. Sherratt   Spatial mosaic formation through
                                  frequency-dependent selection in
                                  Müllerian mimicry complexes . . . . . . . 165--174
                Xiaojing Yu and   
               Jianping Cao and   
                 Yudong Cai and   
                 Tieliu Shi and   
                       Yixue Li   Predicting rRNA-, RNA-, and DNA-binding
                                  proteins from primary structure with
                                  support vector machines  . . . . . . . . 175--184
                 D. Gurarie and   
            P. A. Zimmerman and   
                     C. H. King   Dynamic regulation of single- and
                                  mixed-species malaria infection:
                                  Insights to specific and non-specific
                                  mechanisms of control  . . . . . . . . . 185--199
               Zhihua Zhang and   
                   Hong Sun and   
                 Yong Zhang and   
                    Yi Zhao and   
                Baochen Shi and   
                 Shiwei Sun and   
                Hongchao Lu and   
                  Dongbo Bu and   
              Lunjiang Ling and   
                  Runsheng Chen   Genome-wide analysis of mammalian DNA
                                  segment fusion/fission . . . . . . . . . 200--208
             Juan S. Aranda and   
              Edgar Salgado and   
Alejandro Muñoz-Diosdado   Multifractality in intracellular
                                  enzymatic reactions  . . . . . . . . . . 209--217
Rasmus Grònfeldt Winther   Fisherian and Wrightian perspectives in
                                  evolutionary genetics and model-mediated
                                  imposition of theoretical assumptions    218--232
        Steven C. Le Comber and   
             Barry Nicholls and   
              D. Kim Rossmo and   
                  Paul A. Racey   Geographic profiling and animal foraging 233--240
          B. R. Guru Prasad and   
                Renee M. Borges   Searching on patch networks using
                                  correlated random walks: Space usage and
                                  optimal foraging predictions using
                                  Markov chain models  . . . . . . . . . . 241--249
                  S.-H. Lee and   
                  H. K. Pak and   
                     T.-S. Chon   Dynamics of prey-flock escaping behavior
                                  in response to predator's attack . . . . 250--259
        Victor Sivozhelezov and   
               Claudio Nicolini   Theoretical framework for octopus
                                  rhodopsin crystallization  . . . . . . . 260--269
             Jens M. Olesen and   
            Jordi Bascompte and   
             Yoko L. Dupont and   
                  Pedro Jordano   The smallest of all worlds: Pollination
                                  networks . . . . . . . . . . . . . . . . 270--276
                 Jon F. Wilkins   Tissue-specific reactivation of gene
                                  expression at an imprinted locus . . . . 277--287
             William F. Pickard   Absorption by a moving spherical
                                  organelle in a heterogeneous cytoplasm:
                                  Implications for the role of trafficking
                                  in a symplast  . . . . . . . . . . . . . 288--301
        Penelope A. Hancock and   
       E. J. Milner-Gulland and   
             Matthew J. Keeling   Modelling the many-wrongs principle: The
                                  navigational advantages of aggregation
                                  in nomadic foragers  . . . . . . . . . . 302--310
                   B. Hopenfeld   A mathematical analysis of the action
                                  potential plateau duration of a human
                                  ventricular myocyte  . . . . . . . . . . 311--322
                David J. Klinke   The ratio of P40 monomer to dimer is an
                                  important determinant of IL-12
                                  bioactivity  . . . . . . . . . . . . . . 323--335
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 165--336 (21 May 2006) . . . . . . ??

Journal of Theoretical Biology
Volume 240, Number 3, June 7, 2006

                    Trevor Dale   Protein and nucleic acid together: a
                                  mechanism for the emergence of
                                  biological selection . . . . . . . . . . 337--342
              Massimo Di Giulio   The non-monophyletic origin of the tRNA
                                  molecule and the origin of genes only
                                  after the evolutionary stage of the last
                                  universal common ancestor (LUCA) . . . . 343--352
      Ricard V. Solé and   
     Josep Sardanyés and   
          Juana Díez and   
                    Antonio Mas   Information catastrophe in RNA viruses
                                  through replication thresholds . . . . . 353--359
                 Mike Steel and   
                     Jotun Hein   Reconstructing pedigrees: a
                                  combinatorial perspective  . . . . . . . 360--367
                 Ales Iglic and   
     Henry Hägerstrand and   
              Peter Veranic and   
             Ana Plemenitas and   
           Veronika Kralj-Iglic   Curvature-induced accumulation of
                                  anisotropic membrane components and raft
                                  formation in cylindrical membrane
                                  protrusions  . . . . . . . . . . . . . . 368--373
                   Jie Yang and   
              Xian-Chi Dong and   
                       Yao Leng   Conformation biases of amino acids based
                                  on tripeptide microenvironment from PDB
                                  database . . . . . . . . . . . . . . . . 374--384
              Tobias Merkle and   
                Martin Rost and   
                   Wolfgang Alt   Egocentric path integration models and
                                  their application to desert arthropods   385--399
        Lauren Ancel Meyers and   
            M. E. J. Newman and   
              Babak Pourbohloul   Predicting epidemics on directed contact
                                  networks . . . . . . . . . . . . . . . . 400--418
                 R. Twarock and   
                  R. W. Hendrix   Crosslinking in viral capsids via tiling
                                  theory . . . . . . . . . . . . . . . . . 419--424
          Shuichi Matsumura and   
               Thomas J. Hayden   When should signals of submission be
                                  given? --- A game theory model . . . . . 425--433
           Andreea Munteanu and   
          Ricard V. Solé   Phenotypic diversity and chaos in a
                                  minimal cell model . . . . . . . . . . . 434--442
            Hideki Nakayama and   
              Hiroto Tanaka and   
               Toshimitsu Ushio   The formulation of the control of an
                                  expression pattern in a gene network by
                                  propositional calculus . . . . . . . . . 443--450
                Evelyn Rost and   
                 Ralf Geske and   
                  Michael Baake   Signal analysis of impulse response
                                  functions in MR and CT measurements of
                                  cerebral blood flow  . . . . . . . . . . 451--458
             Caterina Guiot and   
        Pier Paolo Delsanto and   
         Alberto Carpinteri and   
               Nicola Pugno and   
               Yuri Mansury and   
            Thomas S. Deisboeck   The dynamic evolution of the power
                                  exponent in a universal growth model of
                                  tumors . . . . . . . . . . . . . . . . . 459--463
              Joshua Downer and   
           Joel R. Sevinsky and   
             Natalie G. Ahn and   
         Katheryn A. Resing and   
                M. D. Betterton   Incorporating expression data in
                                  metabolic modeling: a case study of
                                  lactate dehydrogenase  . . . . . . . . . 464--474
            Mayuko Nakamaru and   
                      Yoh Iwasa   The coevolution of altruism and
                                  punishment: Role of the selfish punisher 475--488
              Heino Hellwig and   
            Ralph Engelmann and   
                 Oliver Deussen   Contact pressure models for spiral
                                  phyllotaxis and their computer
                                  simulation . . . . . . . . . . . . . . . 489--500
          Pierre A. Fortier and   
                 Maimouna Bagna   Estimating conductances of dual-recorded
                                  neurons within a network of coupled
                                  cells  . . . . . . . . . . . . . . . . . 501--510
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 337--510 (7 June 2006) . . . . . . ??

Journal of Theoretical Biology
Volume 240, Number 4, June 21, 2006

             Guido Fritzsch and   
            Martin Schlegel and   
               Peter F. Stadler   Alignments of mitochondrial genome
                                  arrangements: Applications to metazoan
                                  phylogeny  . . . . . . . . . . . . . . . 511--520
           Franziska Michor and   
            Martin A. Nowak and   
                      Yoh Iwasa   Stochastic dynamics of metastasis
                                  formation  . . . . . . . . . . . . . . . 521--530
            Andrew R. Joyce and   
           Keith Easterling and   
        Stephen G. Holtzman and   
               Michael J. Kuhar   Modeling the onset of drug dependence: a
                                  consideration of the requirement for
                                  protein synthesis  . . . . . . . . . . . 531--537
                    Atul Narang   Spontaneous polarization in eukaryotic
                                  gradient sensing: a mathematical model
                                  based on mutual inhibition of frontness
                                  and backness pathways  . . . . . . . . . 538--553
          Melanie N. Scholz and   
         Maarten F. Bobbert and   
          A. J. Knoek van Soest   Scaling and jumping: Gravity loses grip
                                  on small jumpers . . . . . . . . . . . . 554--561
              Takashi Miura and   
               Kohei Shiota and   
        Gillian Morriss-Kay and   
                Philip K. Maini   Mixed-mode pattern in Doublefoot mutant
                                  mouse limb--Turing reaction--diffusion
                                  model on a growing domain during limb
                                  development  . . . . . . . . . . . . . . 562--573
           Johan F. Galindo and   
   Clara I. Bermúdez and   
                  Edgar E. Daza   tRNA structure from a graph and quantum
                                  theoretical perspective  . . . . . . . . 574--582
                   F. Hayot and   
                 C. Jayaprakash   NF-$ \kappa $B oscillations and
                                  cell-to-cell variability . . . . . . . . 583--591
                   Ning Tan and   
                      Qi Ouyang   Design of a network with state stability 592--598
  Marie-Aimée Dronne and   
        Jean-Pierre Boissel and   
               Emmanuel Grenier   A mathematical model of ion movements in
                                  grey matter during a stroke  . . . . . . 599--615
       Fyodor A. Kondrashov and   
        Aleksey Y. Ogurtsov and   
           Alexey S. Kondrashov   Selection in favor of nucleotides G and
                                  C diversifies evolution rates and levels
                                  of polymorphism at mammalian synonymous
                                  sites  . . . . . . . . . . . . . . . . . 616--626
               Christoph Hauert   Spatial effects in social dilemmas . . . 627--636
          Yehuda G. Assaraf and   
               Ilan Ifergan and   
             Wisam N. Kadry and   
                  Ron Y. Pinter   Computer modelling of antifolate
                                  inhibition of folate metabolism using
                                  hybrid functional petri nets . . . . . . 637--647
                  E. Sherer and   
            R. E. Hannemann and   
                 A. Rundell and   
                  D. Ramkrishna   Analysis of resonance chemotherapy in
                                  leukemia treatment via multi-staged
                                  population balance models  . . . . . . . 648--661
               Xin-Sheng Hu and   
                   Fangliang He   Seed and pollen flow in expanding a
                                  species' range . . . . . . . . . . . . . 662--672
                      Anonymous   Author Index . . . . . . . . . . . . . . 673--675
                      Anonymous   Subject Index  . . . . . . . . . . . . . 676--683
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 511--684 (21 June 2006)  . . . . . ??


Journal of Theoretical Biology
Volume 241, Number 1, July 7, 2006

       Alexei A. Romanyukha and   
           Sergey G. Rudnev and   
                Igor A. Sidorov   Energy cost of infection burden: An
                                  approach to understanding the dynamics
                                  of host-pathogen interactions  . . . . . 1--13
           Stephen M. Krone and   
                   Yongtao Guan   Spatial self-organization in a cyclic
                                  resource-species model . . . . . . . . . 14--25
            Martin A. Nowak and   
           Franziska Michor and   
                      Yoh Iwasa   Genetic instability and clonal expansion 26--32
             David B. Dusenbery   Selection for high gamete encounter
                                  rates explains the evolution of
                                  anisogamy using plausible assumptions
                                  about size relationships of swimming
                                  speed and duration . . . . . . . . . . . 33--38
            Cristopher M. Niell   Theoretical analysis of a synaptotropic
                                  dendrite growth mechanism  . . . . . . . 39--48
          R. Ernesto Blanco and   
                Rodolfo Gambini   A biomechanical model for size, speed
                                  and anatomical variations of the
                                  energetic costs of running mammals . . . 49--61
               Michael Beil and   
             Stefanie Eckel and   
            Frank Fleischer and   
            Hendrik Schmidt and   
             Volker Schmidt and   
                   Paul Walther   Fitting of random tessellation models to
                                  keratin filament networks  . . . . . . . 62--72
        Victor Sivozhelezov and   
           Eugenia Pechkova and   
               Claudio Nicolini   Mapping electrostatic potential of a
                                  protein on its hydrophobic surface:
                                  Implications for crystallization of
                                  Cytochrome P450scc . . . . . . . . . . . 73--80
          Robert M. Seymour and   
            Andrew Pomiankowski   ESS gene expression of X-linked
                                  imprinted genes subject to sexual
                                  selection  . . . . . . . . . . . . . . . 81--93
                James W. Ji and   
       Nikolaos M. Tsoukias and   
             Daniel Goldman and   
            Aleksander S. Popel   A computational model of oxygen
                                  transport in skeletal muscle for
                                  sprouting and splitting modes of
                                  angiogenesis . . . . . . . . . . . . . . 94--108
               Julien Arino and   
                   Lin Wang and   
           Gail S. K. Wolkowicz   An alternative formulation for a delayed
                                  logistic equation  . . . . . . . . . . . 109--119
                  Ling Yang and   
               Zhangang Han and   
          W. Robb MacLellan and   
             James N. Weiss and   
                      Zhilin Qu   Linking cell division to cell growth in
                                  a spatiotemporal model of the cell cycle 120--133
            N. J. Burroughs and   
Bruno Miguel Paz Mendes de Oliveira and   
           Alberto Adrego Pinto   Regulatory T cell adjustment of quorum
                                  growth thresholds and the control of
                                  local immune responses . . . . . . . . . 134--141
               Edwin H. Battley   The sources of thermal energy exchange
                                  accompanying microbial catabolism  . . . 142--151
                    Dong Mi and   
                  G. R. Liu and   
                 J.-S. Wang and   
                       Z. R. Li   Relationships between the folding rate
                                  constant and the topological parameters
                                  of small two-state proteins based on
                                  general random walk model  . . . . . . . 152--157
            Heiko Enderling and   
   Alexander R. A. Anderson and   
        Mark A. J. Chaplain and   
          Alastair J. Munro and   
               Jayant S. Vaidya   Mathematical modelling of radiotherapy
                                  strategies for early breast cancer . . . 158--171
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--172 (7 July 2006) . . . . . . . ??

Journal of Theoretical Biology
Volume 241, Number 2, July 21, 2006

                    Chun Li and   
                Nannan Tang and   
                       Jun Wang   Directed graphs of DNA sequences and
                                  their numerical characterization . . . . 173--177
    Hisako Takigawa-Imamura and   
              Atsushi Mochizuki   Transcriptional autoregulation by
                                  phosphorylated and non-phosphorylated
                                  KaiC in cyanobacterial circadian rhythms 178--192
                 G. Chowell and   
                C. E. Ammon and   
           N. W. Hengartner and   
                    J. M. Hyman   Transmission dynamics of the great
                                  influenza pandemic of 1918 in Geneva,
                                  Switzerland: Assessing the effects of
                                  hypothetical interventions . . . . . . . 193--204
             Clark Jeffries and   
           Diana O. Perkins and   
               Michael Jarstfer   Systematic discovery of the grammar of
                                  translational inhibition by RNA hairpins 205--215
             Yisroel Brumer and   
           Franziska Michor and   
          Eugene I. Shakhnovich   Genetic instability and the quasispecies
                                  model  . . . . . . . . . . . . . . . . . 216--222
             Orkun S. Soyer and   
            Thomas Pfeiffer and   
           Sebastian Bonhoeffer   Simulating the evolution of signal
                                  transduction pathways  . . . . . . . . . 223--232
         F. A. C. C. Chalub and   
               F. C. Santos and   
                  J. M. Pacheco   The evolution of norms . . . . . . . . . 233--240
             Lo\"\ic Forest and   
           Fernando Padilla and   
Salomé Martínez and   
          Jacques Demongeot and   
        Jaime San Martín   Modelling of auxin transport affected by
                                  gravity and differential radial growth   241--251
             Jason H. Moore and   
          Joshua C. Gilbert and   
               Chia-Ti Tsai and   
             Fu-Tien Chiang and   
                Todd Holden and   
                Nate Barney and   
                  Bill C. White   A flexible computational framework for
                                  detecting, characterizing, and
                                  interpreting statistical patterns of
                                  epistasis in genetic studies of human
                                  disease susceptibility . . . . . . . . . 252--261
              Laszlo Kocsis and   
               Peter Herman and   
                     Andras Eke   Mathematical model for the estimation of
                                  hemodynamic and oxygenation variables by
                                  tissue spectroscopy  . . . . . . . . . . 262--275
        J. Christian J. Ray and   
            Denise E. Kirschner   Requirement for multiple activation
                                  signals by anti-inflammatory feedback in
                                  macrophages  . . . . . . . . . . . . . . 276--294
               Carlos Vilas and   
Míriam R. García and   
             Julio R. Banga and   
              Antonio A. Alonso   Stabilization of inhomogeneous patterns
                                  in a diffusion-reaction system under
                                  structural and parametric uncertainties  295--306
       Alexandra Agranovich and   
              Yoram Louzoun and   
               Nadav Shnerb and   
                    Sasi Moalem   Catalyst-induced growth with limited
                                  catalyst lifespan and competition  . . . 307--320
     Hervé Seligmann and   
        Neeraja M. Krishnan and   
               Basuthkar J. Rao   Possible multiple origins of replication
                                  in primate mitochondria: Alternative
                                  role of tRNA sequences . . . . . . . . . 321--332
          Juan B. Gutierrez and   
                   John L. Teem   A model describing the effect of
                                  sex-reversed YY fish in an established
                                  wild population: The use of a Trojan Y
                                  chromosome to cause extinction of an
                                  introduced exotic species  . . . . . . . 333--341
               Filipa Alves and   
               Rui Dilão   Modeling segmental patterning in
                                  Drosophila: Maternal and gap genes . . . 342--359
              Katie Johnson and   
                 Louis F. Rossi   A mathematical and experimental study of
                                  ant foraging trail dynamics  . . . . . . 360--369
              Ulf Dieckmann and   
                Mikko Heino and   
                 Kalle Parvinen   The adaptive dynamics of function-valued
                                  traits . . . . . . . . . . . . . . . . . 370--389
             Jiangning Song and   
               Minglei Wang and   
                  Kevin Burrage   Exploring synonymous codon usage
                                  preferences of disulfide-bonded and
                                  non-disulfide bonded cysteines in the
                                  \bionameE. coli genome . . . . . . . . . 390--401
 Jean-Baptiste André and   
                Bernard Godelle   Within-host evolution and virulence in
                                  microparasites . . . . . . . . . . . . . 402--409
             H. A. Campbell and   
             J. Z. Klepacki and   
                    S. Egginton   A new method in applying power spectral
                                  statistics to examine cardio-respiratory
                                  interactions in fish . . . . . . . . . . 410--419
                James N. McNair   Probabilistic settling in the Local
                                  Exchange Model of turbulent particle
                                  transport  . . . . . . . . . . . . . . . 420--437
           Bernat Corominas and   
          Ricard V. Solé   Network topology and self-consistency in
                                  language games . . . . . . . . . . . . . 438--441
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 173--442 (21 July 2006)  . . . . . ??

Journal of Theoretical Biology
Volume 241, Number 3, August 7, 2006

                   Liane Gabora   Self-other organization: Why early life
                                  did not evolve through natural selection 443--450
                 Wendi Wang and   
          Yasuhiro Takeuchi and   
             Yasuhisa Saito and   
                 Shinji Nakaoka   Prey-predator system with parental care
                                  for predators  . . . . . . . . . . . . . 451--458
           Christelle Magal and   
            Olivier Dangles and   
          Philippe Caparroy and   
      Jérôme Casas   Hair canopy of cricket sensory system
                                  tuned to predator signals  . . . . . . . 459--466
              Akihiko Mougi and   
                Kinya Nishimura   Evolution of the maturation rate
                                  collapses competitive coexistence  . . . 467--476
                   A. Nunes and   
         M. M. Telo da Gama and   
                 M. G. M. Gomes   Localized contacts between hosts reduce
                                  pathogen diversity . . . . . . . . . . . 477--487
             Hugues Bersini and   
               Tom Lenaerts and   
            Francisco C. Santos   Growing biological networks: Beyond the
                                  gene-duplication model . . . . . . . . . 488--505
                 Y. Shastri and   
                     U. Diwekar   Sustainable ecosystem management using
                                  optimal control theory: Part 1
                                  (deterministic systems)  . . . . . . . . 506--521
                 Y. Shastri and   
                     U. Diwekar   Sustainable ecosystem management using
                                  optimal control theory: Part 2
                                  (stochastic systems) . . . . . . . . . . 522--532
                Ken Biegeleisen   The probable structure of the
                                  protamine-DNA complex  . . . . . . . . . 533--540
            Hironori Fujita and   
              Atsushi Mochizuki   Pattern formation of leaf veins by the
                                  positive feedback regulation between
                                  auxin flow and auxin efflux carrier  . . 541--551
             A. G. Rossberg and   
                 H. Matsuda and   
                 T. Amemiya and   
                        K. Itoh   Food webs: Experts consuming families of
                                  experts  . . . . . . . . . . . . . . . . 552--563
        Steven R. McDougall and   
   Alexander R. A. Anderson and   
            Mark A. J. Chaplain   Mathematical modelling of dynamic
                                  adaptive tumour-induced angiogenesis:
                                  Clinical implications and therapeutic
                                  targeting strategies . . . . . . . . . . 564--589
              Daniel Lawson and   
         Henrik Jeldtoft Jensen   The species-area relationship and
                                  evolution  . . . . . . . . . . . . . . . 590--600
            P. R. Moorcroft and   
               S. W. Pacala and   
                    M. A. Lewis   Potential role of natural enemies during
                                  tree range expansions following climate
                                  change . . . . . . . . . . . . . . . . . 601--616
               J. Srividhya and   
               M. S. Gopinathan   A simple time delay model for eukaryotic
                                  cell cycle . . . . . . . . . . . . . . . 617--627
               Efrath Barta and   
                 Alice Maroudas   A theoretical study of the distribution
                                  of insulin-like growth factor in human
                                  articular cartilage  . . . . . . . . . . 628--638
                  Peter L. Hurd   Resource holding potential, subjective
                                  resource value, and game theoretical
                                  models of aggressiveness signalling  . . 639--648
         Michail Stamatakis and   
             Nikos V. Mantzaris   Modeling of ATP-mediated signal
                                  transduction and wave propagation in
                                  astrocytic cellular networks . . . . . . 649--668
                  Koh Hashimoto   Unpredictability induced by unfocused
                                  games in evolutionary game dynamics  . . 669--675
           Franziska Michor and   
                      Yoh Iwasa   Dynamics of metastasis suppressor gene
                                  inactivation . . . . . . . . . . . . . . 676--689
             Nikos V. Mantzaris   Stochastic and deterministic simulations
                                  of heterogeneous cell population
                                  dynamics . . . . . . . . . . . . . . . . 690--706
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 443--706 (7 August 2006) . . . . . ??

Journal of Theoretical Biology
Volume 241, Number 4, August 21, 2006

               Andy Gardner and   
                Alex T. Kalinka   Recombination and the evolution of
                                  mutational robustness  . . . . . . . . . 707--715
                  Nils Calander   Propensity of a circadian clock to
                                  adjust to the 24h day--night light cycle
                                  and its sensitivity to molecular noise   716--724
              Samuel Venner and   
            Iadine Chad\`es and   
    Marie-Claude Bel-Venner and   
              Alain Pasquet and   
 François Charpillet and   
               Raymond Leborgne   Dynamic optimization over infinite-time
                                  horizon: Web-building strategy in an
                                  orb-weaving spider as a case study . . . 725--733
              Daniel I. Bolnick   Multi-species outcomes in a common model
                                  of sympatric speciation  . . . . . . . . 734--744
        Timothy Killingback and   
            Hendrik J. Blok and   
                Michael Doebeli   Scale-free extinction dynamics in
                                  spatially structured host-parasitoid
                                  systems  . . . . . . . . . . . . . . . . 745--750
          Ivar Òstby and   
        Leiv Òyehaug and   
                Harald B. Steen   A stochastic model of cancer initiation
                                  including a bystander effect . . . . . . 751--764
                Huijie Yang and   
               Fangcui Zhao and   
               Jianzhong Gu and   
                  Binghong Wang   Nonlinear modelling approach to human
                                  promoter sequences . . . . . . . . . . . 765--773
                Robert Rowthorn   The evolution of altruism between
                                  siblings: Hamilton's rule revisited  . . 774--790
        Emmanuel Tannenbaum and   
           James L. Sherley and   
          Eugene I. Shakhnovich   Semiconservative quasispecies equations
                                  for polysomic genomes: The haploid case  791--805
              Joanne Turner and   
            Roger G. Bowers and   
              Michael Begon and   
          Susan E. Robinson and   
                Nigel P. French   A semi-stochastic model of the
                                  transmission of \bionameEscherichia coli
                                  O157 in a typical UK dairy herd:
                                  Dynamics, sensitivity analysis and
                                  intervention/prevention strategies . . . 806--822
               Young-Ho Eom and   
                 Soojin Lee and   
                  Hawoong Jeong   Exploring local structural organization
                                  of metabolic networks using subgraph
                                  patterns . . . . . . . . . . . . . . . . 823--829
                  Dokyun Na and   
                Dongsup Kim and   
                     Doheon Lee   Mathematical modeling of humoral immune
                                  response suppression by passively
                                  administered antibodies in mice  . . . . 830--851
                Ingo Roeder and   
                 Ingmar Glauche   Towards an understanding of lineage
                                  specification in hematopoietic stem
                                  cells: a mathematical model for the
                                  interaction of transcription factors
                                  GATA-1 and PU.1  . . . . . . . . . . . . 852--865
          Catherine Q. Howe and   
              R. Beau Lotto and   
                    Dale Purves   Comparison of Bayesian and empirical
                                  ranking approaches to visual perception  866--875
              Ian G. Pearce and   
        Mark A. J. Chaplain and   
         Peter G. Schofield and   
   Alexander R. A. Anderson and   
             Stephen F. Hubbard   Modelling the spatio-temporal dynamics
                                  of multi-species host-parasitoid
                                  interactions: Heterogeneous patterns and
                                  ecological implications  . . . . . . . . 876--886
                      D. Waxman   Fisher's geometrical model of
                                  evolutionary adaptation-Beyond spherical
                                  geometry . . . . . . . . . . . . . . . . 887--895
            J. M. J. Travis and   
              R. W. Brooker and   
                E. J. Clark and   
                      C. Dytham   The distribution of positive and
                                  negative species interactions across
                                  environmental gradients on a
                                  dual-lattice model . . . . . . . . . . . 896--902
                  K. Bartha and   
                      H. Rieger   Vascular network remodeling via vessel
                                  cooption, regression and growth in
                                  tumors . . . . . . . . . . . . . . . . . 903--918
              Zachariah Sinkala   Soliton/exciton transport in proteins    919--927
                     J. J. Bull   Optimality models of phage life history
                                  and parallels in disease evolution . . . 928--938
                Clara Prats and   
        Daniel López and   
         Antoni Giró and   
               Jordi Ferrer and   
                  Joaquim Valls   Individual-based modelling of bacterial
                                  cultures to study the microscopic causes
                                  of the lag phase . . . . . . . . . . . . 939--953
          Mojdeh Mohtashemi and   
            Peter Szolovits and   
               James Dunyak and   
               Kenneth D. Mandl   A susceptible-infected model of early
                                  detection of respiratory infection
                                  outbreaks on a background of influenza   954--963
           Hiroshi Nishiura and   
                Klaus Dietz and   
                 Martin Eichner   The earliest notes on the reproduction
                                  number in relation to herd immunity:
                                  Theophil Lotz and smallpox vaccination   964--967
                      Anonymous   Author Index . . . . . . . . . . . . . . 968--970
                      Anonymous   Subject Index  . . . . . . . . . . . . . 971--979
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 707--980 (21 August 2006)  . . . . ??


Journal of Theoretical Biology
Volume 242, Number 1, September 7, 2006

                   Elan Gin and   
                Vivien Kirk and   
                    James Sneyd   A bifurcation analysis of calcium
                                  buffering  . . . . . . . . . . . . . . . 1--15
                  Lu Gaohua and   
           Tsuyoshi Maekawa and   
                Hidenori Kimura   An integrated model of
                                  thermodynamic-hemodynamic-pharmacokinetic system and its application on decoupling control of intracranial temperature and pressure in brain hypothermia treatment 16--31
                   M. Broom and   
                M. P. Speed and   
                   G. D. Ruxton   Evolutionarily stable defence and
                                  signalling of that defence . . . . . . . 32--43
                D. M. Lewis and   
                     S. I. Bala   Plankton predation rates in turbulence:
                                  a study of the limitations imposed on a
                                  predator with a non-spherical field of
                                  sensory perception . . . . . . . . . . . 44--61
                M. Kohandel and   
          S. Sivaloganathan and   
                         A. Oza   Mathematical modeling of ovarian cancer
                                  treatments: Sequencing of surgery and
                                  chemotherapy . . . . . . . . . . . . . . 62--68
         Hervé Seligmann   Error propagation across levels of
                                  organization: From chemical stability of
                                  ribosomal RNA to developmental stability 69--80
                 D. Fouchet and   
             S. Marchandeau and   
                M. Langlais and   
                     D. Pontier   Waning of maternal immunity and the
                                  impact of diseases: The example of
                                  myxomatosis in natural rabbit
                                  populations  . . . . . . . . . . . . . . 81--89
              Stefan Van Dongen   Prior specification in Bayesian
                                  statistics: Three cautionary tales . . . 90--100
        Grzegorz A. Rempala and   
           Kenneth S. Ramos and   
                Ted Kalbfleisch   A stochastic model of gene
                                  transcription: An application to L1
                                  retrotransposition events  . . . . . . . 101--116
                    Hao Guo and   
                Chong Zheng and   
          Elizabeth R. Gaillard   Structure prediction of the RPE65
                                  protein  . . . . . . . . . . . . . . . . 117--122
                   Jack Lee and   
               Bruce Smaill and   
                  Nicolas Smith   Hodgkin--Huxley type ion channel
                                  characterization: An improved method of
                                  voltage clamp experiment parameter
                                  estimation . . . . . . . . . . . . . . . 123--134
              Qian-Zhong Li and   
                        Hao Lin   The recognition and prediction of $
                                  \sigma 70 $ promoters in
                                  \bionameEscherichia coli K-12  . . . . . 135--141
                   Y. Liang and   
            R. M. McMeeking and   
                    A. G. Evans   A finite element simulation scheme for
                                  biological muscular hydrostats . . . . . 142--150
             P. de Beaudrap and   
                  G. Witten and   
                   G. Biltz and   
                     E. Perrier   Mechanistic model of fuel selection in
                                  the muscle . . . . . . . . . . . . . . . 151--163
          P. Rämö and   
                 J. Kesseli and   
                   O. Yli-Harja   Perturbation avalanches and criticality
                                  in gene regulatory networks  . . . . . . 164--170
               Mauro Ursino and   
      Giuseppe-Emiliano La Cara   Travelling waves and EEG patterns during
                                  epileptic seizure: Analysis with an
                                  integrate-and-fire neural network  . . . 171--187
                 A. J. Wood and   
              G. J. Ackland and   
                   T. M. Lenton   Mutation of albedo and growth response
                                  produces oscillations in a spatial
                                  Daisyworld . . . . . . . . . . . . . . . 188--198
                   Jie Yang and   
              Xian-Chi Dong and   
                       Yao Leng   Application of FTTP to alpha-helix or
                                  beta-strand motifs . . . . . . . . . . . 199--219
            Angela Reynolds and   
             Jonathan Rubin and   
            Gilles Clermont and   
                   Judy Day and   
             Yoram Vodovotz and   
             G. Bard Ermentrout   A reduced mathematical model of the
                                  acute inflammatory response: I.
                                  Derivation of model and analysis of
                                  anti-inflammation  . . . . . . . . . . . 220--236
                   Judy Day and   
             Jonathan Rubin and   
             Yoram Vodovotz and   
             Carson C. Chow and   
            Angela Reynolds and   
                Gilles Clermont   A reduced mathematical model of the
                                  acute inflammatory response II.
                                  Capturing scenarios of repeated
                                  endotoxin administration . . . . . . . . 237--256
              Massimo Di Giulio   Nanoarchaeum equitans is a living fossil 257--260
              Christoph Giersch   Simple analytical expression for the
                                  extent of transcellular diffusion
                                  gradients. Addendum to ``Stationary
                                  diffusion gradients \ldots'' [J. Theor.
                                  Biol. \bf 224, 385--397 (2003)]  . . . . 261--262
       Soile V. E. Keränen   Erratum to: ``Simulation study on
                                  effects of signaling network structure
                                  on the developmental increase in
                                  complexity'': [J. Theor. Biol. \bf 231
                                  (2004) 3--21]  . . . . . . . . . . . . . 263--263
            Kazuhiko Masaka and   
                Takenori Takada   Corrigendum to ``Floral sex ratio
                                  strategy in wind-pollinated monoecious
                                  species subject to wind-pollination
                                  efficiency and competitive sharing among
                                  male flowers as a game'': [J. Theor.
                                  Biol. \bf 240 (2006) 114--125] . . . . . 264--264
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 1--264 (7 September 2006)  . . . . ??

Journal of Theoretical Biology
Volume 242, Number 2, September 21, 2006

           Adriana T. Dawes and   
         G. Bard Ermentrout and   
         Eric N. Cytrynbaum and   
          Leah Edelstein-Keshet   Actin filament branching and protrusion
                                  velocity in a simple 1D model of a
                                  motile cell  . . . . . . . . . . . . . . 265--279
            Jun Nakabayashi and   
                   Akira Sasaki   A mathematical model for apoptosome
                                  assembly: The optimal cytochrome c
                                  /Apaf-1 ratio  . . . . . . . . . . . . . 280--287
              Mostafa Adimy and   
             Fabien Crauste and   
                    Shigui Ruan   Periodic oscillations in leukopoiesis
                                  models with two delays . . . . . . . . . 288--299
     Yaroslav R. Nartsissov and   
          Elena V. Mashkovtseva   Application of rigid body mechanics to
                                  theoretical description of rotation
                                  within F$_0$F$_1$-ATP synthase . . . . . 300--308
          J. R. C. Piqueira and   
           F. A. Serboncini and   
              L. H. A. Monteiro   Biological models: Measuring variability
                                  with classical and quantum information   309--313
                Naoko Ogawa and   
               Hiromasa Oku and   
           Koichi Hashimoto and   
             Masatoshi Ishikawa   A physical model for galvanotaxis of
                                  Paramecium cell  . . . . . . . . . . . . 314--328
                  G. Albano and   
                      V. Giorno   A stochastic model in tumor growth . . . 329--336
                  Ben Adams and   
                  Michael Boots   Modelling the relationship between
                                  antibody-dependent enhancement and
                                  immunological distance with application
                                  to dengue  . . . . . . . . . . . . . . . 337--346
           Yegor A. Voronin and   
            Igor A. Sidorov and   
                Vinay K. Pathak   A probability model predicting
                                  initiation efficiency of retroviral
                                  vectors with two primer-binding sites    347--355
          Anita Shu-Han Lin and   
            Martin L. Buist and   
           Nicolas P. Smith and   
               Andrew J. Pullan   Modelling slow wave activity in the
                                  small intestine  . . . . . . . . . . . . 356--362
            Robert Schlicht and   
                      Yoh Iwasa   Direction of regeneration waves in
                                  grid-based models for forest dynamics    363--371
              Serge Smidtas and   
     Vincent Schächter and   
 François Kép\`es   The adaptive filter of the yeast
                                  galactose pathway  . . . . . . . . . . . 372--381
                Yusen Zhang and   
                       Wei Chen   Invariants of DNA sequences based on
                                  2DD-curves . . . . . . . . . . . . . . . 382--388
              Berna Sariyar and   
                 Sinem Perk and   
                 Ugur Akman and   
         Amable Hortaçsu   Monte Carlo sampling and principal
                                  component analysis of flux distributions
                                  yield topological and modular
                                  information on metabolic networks  . . . 389--400
             Boris Veytsman and   
              Leila Akhmadeyeva   Simple mathematical model of pathologic
                                  microsatellite expansions: When
                                  self-reparation does not work  . . . . . 401--408
          Niko Beerenwinkel and   
          Nicholas Eriksson and   
                Bernd Sturmfels   Evolution on distributive lattices . . . 409--420
       M. G. Van der Linden and   
           T. G. Rêgo and   
     D. A. M. Araújo and   
                   S. T. Farias   Prediction of potential thermostable
                                  proteins in \bionameXylella fastidiosa   421--425
                Hongying Li and   
               Bong-Rae Kim and   
                    Rongling Wu   Identification of quantitative trait
                                  nucleotides that regulate cancer growth:
                                  a simulation approach  . . . . . . . . . 426--439
    Raja Venkatasubramanian and   
          Michael A. Henson and   
                 Neil S. Forbes   Incorporating energy metabolism into a
                                  growth model of multicellular tumor
                                  spheroids  . . . . . . . . . . . . . . . 440--453
                 Ruiqi Wang and   
                Luonan Chen and   
                Kazuyuki Aihara   Construction of genetic oscillators with
                                  interlocked feedback networks  . . . . . 454--463
           Catherine Beauchemin   Probing the effects of the well-mixed
                                  assumption on viral infection dynamics   464--477
               Gen Kurosawa and   
               Albert Goldbeter   Amplitude of circadian oscillations
                                  entrained by $ 24$-h light-dark cycles   478--488
                    Atul Narang   Comparative analysis of some models of
                                  gene regulation in mixed-substrate
                                  microbial growth . . . . . . . . . . . . 489--501
    Revathi Ananthakrishnan and   
                Jochen Guck and   
              Falk Wottawah and   
         Stefan Schinkinger and   
              Bryan Lincoln and   
              Maren Romeyke and   
                  Tess Moon and   
                 Josef Käs   Quantifying the contribution of actin
                                  networks to the elastic strength of
                                  fibroblasts  . . . . . . . . . . . . . . 502--516
               Xianning Liu and   
              Yasuhiro Takeuchi   Spread of disease with transport-related
                                  infection and entry screening  . . . . . 517--528
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 265--528 (21 September 2006) . . . ??

Journal of Theoretical Biology
Volume 242, Number 3, October 7, 2006

          Sergio Castellano and   
                 Paolo Cermelli   Reconciling sexual selection to species
                                  recognition: a process-based model of
                                  mating decision  . . . . . . . . . . . . 529--538
     Alexander B. Medvinsky and   
             Maria M. Gonik and   
                Bai-Lian Li and   
          Vassili V. Velkov and   
                  Horst Malchow   Invasion of pests resistant to Bt toxins
                                  can lead to inherent non-uniqueness in
                                  genetically modified Bt-plant dynamics:
                                  Mathematical modeling  . . . . . . . . . 539--546
         Bradford E. Peercy and   
              Steven J. Cox and   
       Sagit Shalel-Levanon and   
                 Ka-Yiu San and   
                 George Bennett   A kinetic model of oxygen regulation of
                                  cytochrome production in
                                  \bionameEscherichia coli . . . . . . . . 547--563
                 Kazuyuki Takai   Classification of the possible pairs
                                  between the first anticodon and the
                                  third codon positions based on a simple
                                  model assuming two geometries with which
                                  the pairing effectively potentiates the
                                  decoding complex . . . . . . . . . . . . 564--580
              Adam D. Sylvester   Locomotor decoupling and the origin of
                                  hominin bipedalism . . . . . . . . . . . 581--590
Frédéric Gosselin   An assessment of the dependence of
                                  evenness indices on species richness . . 591--597
          Meredith L. Greer and   
      Laurent Pujo-Menjouet and   
                  Glenn F. Webb   A mathematical analysis of the dynamics
                                  of prion proliferation . . . . . . . . . 598--606
              Zhaochun Yang and   
             Jeen-Shang Lin and   
               Jianxin Chen and   
                James H-C. Wang   Determining substrate displacement and
                                  cell traction fields --- a new approach  607--616
          Alexey V. Melkikh and   
           Vladimir D. Seleznev   Model of active transport of ions in
                                  biomembranes based on ATP-dependent
                                  change of height of diffusion barriers
                                  to ions  . . . . . . . . . . . . . . . . 617--626
           Ernst G. Malygin and   
                Stanley Hattman   A probabilistic approach to compact
                                  steady-state kinetic equations for
                                  enzymic reactions  . . . . . . . . . . . 627--633
                 Rowland R. Kao   Evolution of pathogens towards low $ R_0
                                  $ in heterogeneous populations . . . . . 634--642
                 Jon F. Wilkins   Competitive signal discrimination,
                                  methylation reprogramming and genomic
                                  imprinting . . . . . . . . . . . . . . . 643--651
              Jan Karbowski and   
      Christopher J. Cronin and   
               Adeline Seah and   
             Jane E. Mendel and   
              Daniel Cleary and   
              Paul W. Sternberg   Conservation rules, their breakdown, and
                                  optimality in Caenorhabditis sinusoidal
                                  locomotion . . . . . . . . . . . . . . . 652--669
           K. A. Jane White and   
                 C. A. Gilligan   The role of initial inoculum on epidemic
                                  dynamics . . . . . . . . . . . . . . . . 670--682
                 Xinyu Song and   
                  Zhongyi Xiang   The prey-dependent consumption two-prey
                                  one-predator models with stage structure
                                  for the predator and impulsive effects   683--698
     Mike Mesterton-Gibbons and   
            Ian C. W. Hardy and   
                   Jeremy Field   The effect of differential survivorship
                                  on the stability of reproductive
                                  queueing . . . . . . . . . . . . . . . . 699--712
                    T. Keef and   
              C. Micheletti and   
                     R. Twarock   Master equation approach to the assembly
                                  of viral capsids . . . . . . . . . . . . 713--721
                   Jiaxu Li and   
                 Yang Kuang and   
               Clinton C. Mason   Modeling the glucose-insulin regulatory
                                  system and ultradian insulin secretory
                                  oscillations with two explicit time
                                  delays . . . . . . . . . . . . . . . . . 722--735
           Kei-ichi Tainaka and   
              Jin Yoshimura and   
               Takashi Ushimaru   Stage-dependent density effect in the
                                  cell cycle of budding yeast  . . . . . . 736--742
            R. Varón and   
  M. Garc\'ìa-Moreno and   
  D. Valera-Ruipérez and   
  F. Garc\'ìa-Molina and   
F. Garc\'ìa-Cánovas and   
R. G. Ladrón-de Guevara and   
J. Masiá-Pérez and   
                 B. H. Havsteen   Kinetic analysis of a general model of
                                  activation of aspartic proteinase
                                  zymogens . . . . . . . . . . . . . . . . 743--754
          K. Prévost and   
                   P. Magal and   
                    C. Beaumont   A model of Salmonella infection within
                                  industrial house hens  . . . . . . . . . 755--763
                  Troy Shinbrot   Simulated morphogenesis of developmental
                                  folds due to proliferative pressure  . . 764--773
                Dawn Walker and   
                Steven Wood and   
         Jennifer Southgate and   
              Mike Holcombe and   
               Rodney Smallwood   An integrated agent-mathematical model
                                  of the effect of intercellular
                                  signalling via the epidermal growth
                                  factor receptor on cell proliferation    774--789
            Matthijs van Veelen   Why kin and group selection models may
                                  not be enough to explain human
                                  other-regarding behaviour  . . . . . . . 790--797
                Rui Gardner and   
     Pedro Moradas-Ferreira and   
               Armindo Salvador   Why does superoxide dismutase
                                  overexpression often increase hydrogen
                                  peroxide concentrations? An alternative
                                  explanation  . . . . . . . . . . . . . . 798--800
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 529--800 (7 October 2006)  . . . . ??

Journal of Theoretical Biology
Volume 242, Number 4, October 21, 2006

            M. Saleet Jafri and   
            Malgorzata Kotulska   Modeling the mechanism of metabolic
                                  oscillations in ischemic cardiac
                                  myocytes . . . . . . . . . . . . . . . . 801--817
             Bart De Vylder and   
                     Karl Tuyls   How to reach linguistic consensus: a
                                  proof of convergence for the naming game 818--831
           Richard A. Boyle and   
              Timothy M. Lenton   Fluctuation in the physical environment
                                  as a mechanism for reinforcing
                                  evolutionary transitions . . . . . . . . 832--843
         Sebastian J. Schreiber   Persistence despite perturbations for
                                  interacting populations  . . . . . . . . 844--852
               Enrico Grazi and   
               Cristina Di Bona   Viscosity as an inseparable partner of
                                  muscle contraction . . . . . . . . . . . 853--861
              Dirk Hartmann and   
                  Takashi Miura   Modelling in vitro lung branching
                                  morphogenesis during development . . . . 862--872
             Michael A. Fishman   Involuntary defection and the
                                  evolutionary origins of empathy  . . . . 873--879
                John W. Lorimer   Curved paths in raptor flight:
                                  Deterministic models . . . . . . . . . . 880--889
            Laura B. Sontag and   
         Matthew C. Lorincz and   
               E. Georg Luebeck   Dynamics, stability and inheritance of
                                  somatic DNA methylation imprints . . . . 890--899
            Jonathan M. Jeschke   Density-dependent effects of prey
                                  defenses and predator offenses . . . . . 900--907
                   Hongyun Wang   Motor potential profile and a robust
                                  method for extracting it from time
                                  series of motor positions  . . . . . . . 908--921
               V. R. Chechetkin   Genetic code from tRNA point of view . . 922--934
              Da-Yong Zhang and   
                  Xin-Hua Jiang   Interactive effects of habitat
                                  productivity and herbivore pressure on
                                  the evolution of anti-herbivore defense
                                  in invasive plant populations  . . . . . 935--940
           Shuang-Quan Wang and   
                   Jie Yang and   
                  Kuo-Chen Chou   Using stacked generalization to predict
                                  membrane protein types based on
                                  pseudo-amino acid composition  . . . . . 941--946
                    Nadia Lalam   Estimation of the reaction efficiency in
                                  polymerase chain reaction  . . . . . . . 947--953
       António F. Miguel   Constructal pattern formation in stony
                                  corals, bacterial colonies and plant
                                  roots under different hydrodynamics
                                  conditions . . . . . . . . . . . . . . . 954--961
                      Anonymous   Author Index . . . . . . . . . . . . . . 962--965
                      Anonymous   Subject Index  . . . . . . . . . . . . . 966--975
                      Anonymous   IFC- Editorial board . . . . . . . . . . CO2
                      Anonymous   Pages 801--976 (21 October 2006) . . . . ??


Journal of Theoretical Biology
Volume 243, Number 1, November 7, 2006

          Thomas Cordonnier and   
         Beno\^\it Courbaud and   
                    Alain Franc   The effect of colonization and
                                  competition processes on the relation
                                  between disturbance and diversity in
                                  plant communities  . . . . . . . . . . . 1--12
            James E. McGraw and   
          John F. Y. Brookfield   The interaction between mobile DNAs and
                                  their hosts in a fluctuating environment 13--23
         Piotr H. Pawlowski and   
          Beata Burzy\'nska and   
            Piotr Zielenkiewicz   Theoretical model of reticulocyte to
                                  erythrocyte shape transformation . . . . 24--38
          Fumihiko Takeuchi and   
                 Kenji Yamamoto   Effectiveness of realistic vaccination
                                  strategies for contact networks of
                                  various degree distributions . . . . . . 39--47
               M. Schargott and   
                V. L. Popov and   
                        S. Gorb   Spring model of biological attachment
                                  pads . . . . . . . . . . . . . . . . . . 48--53
   Philip John Livingstone Bell   Sex and the eukaryotic cell cycle is
                                  consistent with a viral ancestry for the
                                  eukaryotic nucleus . . . . . . . . . . . 54--63
               Naoki Masuda and   
                    Norio Konno   Multi-state epidemic processes on
                                  complex networks . . . . . . . . . . . . 64--75
               Xin-Sheng Hu and   
                     Bailian Li   Additive genetic variation and the
                                  distribution of QTN effects among sites  76--85
            Hisashi Ohtsuki and   
                Martin A. Nowak   The replicator equation on graphs  . . . 86--97
        Nicola J. Armstrong and   
           Kevin J. Painter and   
           Jonathan A. Sherratt   A continuum approach to modelling
                                  cell-cell adhesion . . . . . . . . . . . 98--113
            Darin R. Rokyta and   
            Craig J. Beisel and   
                     Paul Joyce   Properties of adaptive walks on
                                  uncorrelated landscapes under strong
                                  selection and weak mutation  . . . . . . 114--120
           Priyanga Amarasekare   Productivity, dispersal and the
                                  coexistence of intraguild predators and
                                  prey . . . . . . . . . . . . . . . . . . 121--133
           Marco A. Janssen and   
            Robert L. Goldstone   Dynamic-persistence of cooperation in
                                  public good games when group size is
                                  dynamic  . . . . . . . . . . . . . . . . 134--142
             Isao Kawaguchi and   
               Masahiro Doi and   
           Shizuko Kakinuma and   
                Yoshiya Shimada   Combined effect of multiple carcinogens
                                  and synergy index  . . . . . . . . . . . 143--151
      Alexandra V. Pokhilko and   
    Fazoil I. Ataullakhanov and   
         Ekhson L. Holmuhamedov   Mathematical model of mitochondrial
                                  ionic homeostasis: Three modes of
                                  Ca$^{2+}$ transport  . . . . . . . . . . 152--169
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 1--170 (7 November 2006) . . . . . ??

Journal of Theoretical Biology
Volume 243, Number 2, November 21, 2006

              A. Brú and   
                      D. Casero   The effect of pressure on the growth of
                                  tumour cell colonies . . . . . . . . . . 171--180
             Robert Forster and   
            Christoph Adami and   
                 Claus O. Wilke   Selection for mutational robustness in
                                  finite populations . . . . . . . . . . . 181--190
          Jane M. Heffernan and   
                  Lindi M. Wahl   Natural variation in HIV infection:
                                  Monte Carlo estimates that include CD8
                                  effector cells . . . . . . . . . . . . . 191--204
                Ken T. D. Eames   Partnership dynamics and strain
                                  competition  . . . . . . . . . . . . . . 205--213
              Bing-Liang Xu and   
                         Yi Tao   External noise and feedback regulation:
                                  Steady-state statistics of
                                  auto-regulatory genetic network  . . . . 214--221
               P. I. Ndiaye and   
               D. J. Bicout and   
                  B. Mondet and   
                    P. Sabatier   Rainfall triggered dynamics of Aedes
                                  mosquito aggressiveness  . . . . . . . . 222--229
              D. J. Hodgson and   
                   D. J. Hosken   Sperm competition promotes the
                                  exploitation of rival ejaculates . . . . 230--234
 François G. Feugier and   
                      Yoh Iwasa   How canalization can make loops: a new
                                  model of reticulated leaf vascular
                                  pattern formation  . . . . . . . . . . . 235--244
           Christine Taylor and   
                  Yoh Iwasa and   
                Martin A. Nowak   A symmetry of fixation times in
                                  evoultionary dynamics  . . . . . . . . . 245--251
             Sukanta Mondal and   
         Rajasekaran Bhavna and   
     Rajasekaran Mohan Babu and   
     Suryanarayanarao Ramakumar   Pseudo amino acid composition and
                                  multi-class support vector machines
                                  approach for conotoxin superfamily
                                  classification . . . . . . . . . . . . . 252--260
             A. G. Rossberg and   
                  K. Yanagi and   
                 T. Amemiya and   
                        K. Itoh   Estimating trophic link density from
                                  quantitative but incomplete diet data    261--272
                Wei-min Liu and   
                     Rui Li and   
               James Z. Sun and   
                  Jing Wang and   
                 Julie Tsai and   
                    Wei Wen and   
         Alexander Kohlmann and   
             P. Mickey Williams   PQN and DQN: Algorithms for expression
                                  microarrays  . . . . . . . . . . . . . . 273--278
              Michael Baake and   
                  Uwe Grimm and   
               Robert Giegerich   Surprises in approximating Levenshtein
                                  distances  . . . . . . . . . . . . . . . 279--282
   Annikki Mäkelä and   
             Harry T. Valentine   The quarter-power scaling model does not
                                  imply size-invariant hydraulic
                                  resistance in plants . . . . . . . . . . 283--285
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 171--286 (21 November 2006)  . . . ??

Journal of Theoretical Biology
Volume 243, Number 3, December 7, 2006

   Jérôme Buhl and   
           Jacques Gautrais and   
      Jean Louis Deneubourg and   
              Pascale Kuntz and   
                  Guy Theraulaz   The growth and form of tunnelling
                                  networks in ants . . . . . . . . . . . . 287--298
              Daniel Lawson and   
     Henrik Jeldtoft Jensen and   
                Kunihiko Kaneko   Diversity as a product of inter-specific
                                  interactions . . . . . . . . . . . . . . 299--307
                Wolfgang Pluhar   AT2--AT3-profiling: a new look at
                                  synonymous codon usage . . . . . . . . . 308--321
                   Jun Qian and   
                   Ping Xie and   
              Shuo-Xing Dou and   
                   Peng-Ye Wang   A model for biased diffusion of
                                  collagenase along collagen fibrils . . . 322--327
         Mark W. Ruszczycky and   
             Vernon E. Anderson   Interpretation of V/K isotope effects
                                  for enzymatic reactions exhibiting
                                  multiple isotopically sensitive steps    328--342
         Matthew J. Simpson and   
           Kerry A. Landman and   
            Barry D. Hughes and   
             Donald F. Newgreen   Looking inside an invasion wave of cells
                                  using continuum models: Proliferation is
                                  the key  . . . . . . . . . . . . . . . . 343--360
           Yutaka Kobayashi and   
             Norio Yamamura and   
             Maurice W. Sabelis   Evolution of talking plants in a
                                  tritrophic context: Conditions for
                                  uninfested plants to attract predators
                                  prior to herbivore attack  . . . . . . . 361--374
     Hervé Seligmann and   
        Neeraja M. Krishnan and   
               Basuthkar J. Rao   Mitochondrial tRNA sequences as unusual
                                  replication origins: Pathogenic
                                  implications for Homo sapiens  . . . . . 375--385
            Laureano Castro and   
                 Miguel A. Toro   Assortative mating through a mechanism
                                  of sexual selection  . . . . . . . . . . 386--392
              William R. Taylor   A molecular model for the origin of
                                  protein translation in an RNA world  . . 393--406
               Leonid Hanin and   
                 Jason Rose and   
                   Marco Zaider   A stochastic model for the sizes of
                                  detectable metastases  . . . . . . . . . 407--417
         Nobuyuki Takahashi and   
                    Rie Mashima   The importance of subjectivity in
                                  perceptual errors on the emergence of
                                  indirect reciprocity . . . . . . . . . . 418--436
           Jorge M. Pacheco and   
              Arne Traulsen and   
                Martin A. Nowak   Active linking in evolutionary games . . 437--443
                  Chao Chen and   
              Yuan-Xin Tian and   
              Xiao-Yong Zou and   
              Pei-Xiang Cai and   
                    Jin-Yuan Mo   Using pseudo-amino acid composition and
                                  support vector machine to predict
                                  protein structural class . . . . . . . . 444--448
                   Folmer Bokma   Artificial neural networks can learn to
                                  estimate extinction rates from molecular
                                  phylogenies  . . . . . . . . . . . . . . 449--454
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 287--454 (7 December 2006) . . . . ??

Journal of Theoretical Biology
Volume 243, Number 4, December 21, 2006

                Lloyd Demetrius   The origin of allometric scaling laws in
                                  biology  . . . . . . . . . . . . . . . . 455--467
     Josep Sardanyés and   
          Ricard V. Solé   Bifurcations and phase transitions in
                                  spatially extended two-member
                                  hypercycles  . . . . . . . . . . . . . . 468--482
            H. Arthur Woods and   
             Roger T. Bonnecaze   Insect eggs at a transition between
                                  diffusion and reaction limitation:
                                  Temperature, oxygen, and water . . . . . 483--492
                  S.-H. Lee and   
               P. Bardunias and   
                       N.-Y. Su   Food encounter rates of simulated
                                  termite tunnels with variable food
                                  size/distribution pattern and tunnel
                                  branch length  . . . . . . . . . . . . . 493--500
                   Murad Banaji   A generic model of electron transport in
                                  mitochondria . . . . . . . . . . . . . . 501--516
            Jana L. Gevertz and   
             Salvatore Torquato   Modeling the effects of vasculature
                                  evolution on early brain tumor growth    517--531
                   B. Ribba and   
                    O. Saut and   
                   T. Colin and   
                  D. Bresch and   
                 E. Grenier and   
                  J. P. Boissel   A multiscale mathematical model of
                                  avascular tumor growth to investigate
                                  the therapeutic benefit of anti-invasive
                                  agents . . . . . . . . . . . . . . . . . 532--541
                Bert J. Lao and   
                Daniel T. Kamei   A compartmental model of iron regulation
                                  in the mouse . . . . . . . . . . . . . . 542--554
              Xiao Qing Liu and   
                     Qi Dai and   
                Zhilong Xiu and   
                  Tianming Wang   PNN-curve: a new 2D graphical
                                  representation of DNA sequences and its
                                  application  . . . . . . . . . . . . . . 555--561
                Xinzhu Meng and   
                    Lansun Chen   Almost periodic solution of
                                  non-autonomous Lotka--Volterra
                                  predator-prey dispersal system with
                                  delays . . . . . . . . . . . . . . . . . 562--574
            Richard Bertram and   
       Morten Gram Pedersen and   
             Dan S. Luciani and   
                 Arthur Sherman   A simplified model for mitochondrial ATP
                                  production . . . . . . . . . . . . . . . 575--586
          Samuel M. Flaxman and   
                  H. Kern Reeve   Putting competition strategies into
                                  ideal free distribution models: Habitat
                                  selection as a tug of war  . . . . . . . 587--593
             Isao Kawaguchi and   
                   Akira Sasaki   The wave speed of intergradation zone in
                                  two-species lattice Müllerian mimicry
                                  model  . . . . . . . . . . . . . . . . . 594--603
            Claire Gaillard and   
        François Strauss   DNA topology and genome organization in
                                  higher eukaryotes: a model . . . . . . . 604--607
                      Anonymous   Author Index . . . . . . . . . . . . . . 608--610
                      Anonymous   Subject Index  . . . . . . . . . . . . . 611--616
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 455--616 (21 December 2006)  . . . ??


Journal of Theoretical Biology
Volume 244, Number 1, January 7, 2007

                 Huiying Wu and   
                 P. A. Robinson   Modeling and investigation of neural
                                  activity in the thalamus . . . . . . . . 1--14
            John G. Skedros and   
               Sidney L. Baucom   Mathematical analysis of trabecular
                                  `trajectories' in apparent trajectorial
                                  structures: The unfortunate historical
                                  emphasis on the human proximal femur . . 15--45
          Hiroyuki Yokomizo and   
               Patsy Haccou and   
                      Yoh Iwasa   Optimal conservation strategy in
                                  fluctuating environments with species
                                  interactions: Resource-enhancement of
                                  the native species versus extermination
                                  of the alien species . . . . . . . . . . 46--58
          William E. Cooper and   
           William G. Frederick   Optimal flight initiation distance . . . 59--67
          Vijay Chickarmane and   
        Boris N. Kholodenko and   
               Herbert M. Sauro   Oscillatory dynamics arising from
                                  competitive inhibition and multisite
                                  phosphorylation  . . . . . . . . . . . . 68--76
        Zakharia M. Frenkel and   
             Edward N. Trifonov   Walking through protein sequence space   77--80
        Christian Bottomley and   
              Valerie Isham and   
Maria-Gloria Basáñez   Population biology of multispecies
                                  helminth infection: Competition and
                                  coexistence  . . . . . . . . . . . . . . 81--95
                   Le Zhang and   
        Chaitanya A. Athale and   
            Thomas S. Deisboeck   Development of a three-dimensional
                                  multiscale agent-based tumor model:
                                  Simulating gene-protein interaction
                                  profiles, cell phenotypes and
                                  multicellular patterns in brain cancer   96--107
             A. Ehrenfeucht and   
             D. M. Prescott and   
                   G. Rozenberg   A model for the origin of internal
                                  eliminated segments (IESs) and gene
                                  rearrangement in stichotrichous ciliates 108--114
                     Yuehua Cui   A statistical framework for genome-wide
                                  scanning and testing of imprinted
                                  quantitative trait loci  . . . . . . . . 115--126
         Sayed-Amir Marashi and   
              Reza Behrouzi and   
                  Hamid Pezeshk   Adaptation of proteins to different
                                  environments: a comparison of proteome
                                  structural properties in Bacillus
                                  subtilis and \bionameEscherichia coli    127--132
               Satoshi Kanazawa   Beautiful parents have more daughters: a
                                  further implication of the generalized
                                  Trivers--Willard hypothesis (gTWH) . . . 133--140
              Anh-Tuan Dinh and   
            Theo Theofanous and   
               Samir Mitragotri   Modeling of pattern regulation in
                                  melanophores . . . . . . . . . . . . . . 141--153
          Ivan V. Surovstev and   
          Jeffrey J. Morgan and   
                Paul A. Lindahl   Whole-cell modeling framework in which
                                  biochemical dynamics impact aspects of
                                  cellular geometry  . . . . . . . . . . . 154--166
               George S. Bakken   A critique of thermal modeling of snake
                                  infrared reception by Jones, Lynn and
                                  Stone (2001) . . . . . . . . . . . . . . 167--168
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 1--168 (7 January 2007)  . . . . . ??

Journal of Theoretical Biology
Volume 244, Number 2, January 21, 2007

             Huseyin Coskun and   
                      Yi Li and   
              Michael A. Mackey   Ameboid cell motility: a model and
                                  inverse problem, with an application to
                                  live cell imaging data . . . . . . . . . 169--179
       N. Jafarnia-Dabanloo and   
             D. C. McLernon and   
                   H. Zhang and   
              A. Ayatollahi and   
                 V. Johari-Majd   A modified Zeeman model for producing
                                  HRV signals and its application to ECG
                                  signal generation  . . . . . . . . . . . 180--189
         Saikat Chakraborty and   
         Vemuri Balakotaiah and   
                   Akhil Bidani   Multiscale model for pulmonary oxygen
                                  uptake and its application to quantify
                                  hypoxemia in hepatopulmonary syndrome    190--207
                  Ben Clark and   
                   Seth Bullock   Shedding light on plant competition:
                                  Modelling the influence of plant
                                  morphology on light capture (and vice
                                  versa) . . . . . . . . . . . . . . . . . 208--217
                   A. Sinkkonen   Modelling the effect of autotoxicity on
                                  density-dependent phytotoxicity  . . . . 218--227
             Paul Mullowney and   
                     Alex James   The role of variance in capped-rate
                                  stochastic growth models with external
                                  mortality  . . . . . . . . . . . . . . . 228--238
       Jacques-A. Sepulchre and   
           Sylvie Reverchon and   
                 William Nasser   Modeling the onset of virulence in a
                                  pectinolytic bacterium . . . . . . . . . 239--257
              Nigel Aylward and   
                    N. Bofinger   Intramolecular interactions in aminoacyl
                                  cyclic-3',5'-nucleotides . . . . . . . . 258--274
           Samad Jahandideh and   
         Parviz Abdolmaleki and   
            Mina Jahandideh and   
  Sayyed Hamed Sadat Hayatshahi   Novel hybrid method for the evaluation
                                  of parameters contributing in
                                  determination of protein structural
                                  classes  . . . . . . . . . . . . . . . . 275--281
            Laurent Lehmann and   
            Lukas F. Keller and   
                    Hanna Kokko   Mate choice evolution, dominance
                                  effects, and the maintenance of genetic
                                  variation  . . . . . . . . . . . . . . . 282--295
                Ernesto Estrada   Food webs robustness to biodiversity
                                  loss: The roles of connectance,
                                  expansibility and degree distribution    296--307
              Steinar Engen and   
              Russell Lande and   
    Bernt-Erik Sæther and   
           Marco Festa-Bianchet   Using reproductive value to estimate key
                                  parameters in density-independent
                                  age-structured populations . . . . . . . 308--317
   József Gál and   
             Taeko Miyazaki and   
      Victor Benno Meyer-Rochow   Computational determination of
                                  refractive index distribution in the
                                  crystalline cones of the compound eye of
                                  Antarctic krill (\bionameEuphausia
                                  superba) . . . . . . . . . . . . . . . . 318--325
                Atul Narang and   
             Sergei S. Pilyugin   Bacterial gene regulation in diauxic and
                                  non-diauxic growth . . . . . . . . . . . 326--348
              Arne Traulsen and   
            Martin A. Nowak and   
               Jorge M. Pacheco   Stochastic payoff evaluation increases
                                  the temperature of selection . . . . . . 349--356
           Hiroshi Nishiura and   
                  Hisashi Inaba   Discussion: Emergence of the concept of
                                  the basic reproduction number from
                                  mathematical demography  . . . . . . . . 357--364
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 169--364 (21 January 2007) . . . . ??

Journal of Theoretical Biology
Volume 244, Number 3, February 7, 2007

                   Marek Kimmel   Ovide Arino, a personal memory . . . . . 365--366
          Alberto d'Onofrio and   
            Ian P. M. Tomlinson   A nonlinear mathematical model of cell
                                  turnover, differentiation and
                                  tumorigenesis in the intestinal crypt    367--374
     Anna Marciniak-Czochra and   
                   Marek Kimmel   Reaction-diffusion approach to modeling
                                  of the spread of early tumors along
                                  linear or tubular structures . . . . . . 375--387
                A. Bertuzzi and   
                  A. Fasano and   
                A. Gandolfi and   
                  C. Sinisgalli   Cell resensitization after delivery of a
                                  cycle-specific anticancer drug and
                                  effect of dose splitting: Learning from
                                  tumour cords . . . . . . . . . . . . . . 388--399
                Janet Dyson and   
         Eva Sánchez and   
   Rosanna Villella-Bressan and   
                  Glenn F. Webb   Stabilization of telomeres in nonlinear
                                  models of proliferating cell lines . . . 400--408
                  Dirk Hartmann   Limit behaviour of spatially growing
                                  cell cultures  . . . . . . . . . . . . . 409--415
        Giovanni Santangelo and   
           Lorenzo Bramanti and   
                 Mimmo Iannelli   Population dynamics and conservation
                                  biology of the over-exploited
                                  Mediterranean red coral  . . . . . . . . 416--423
             Carlos A. Braumann   Harvesting in a random environment: Itô
                                  or Stratonovich calculus?  . . . . . . . 424--432
       Tanya Y. Berger-Wolf and   
           Cristopher Moore and   
                     Jared Saia   A computational approach to animal
                                  breeding . . . . . . . . . . . . . . . . 433--439
           Miguel A. Zavala and   
        Óscar Angulo and   
   Rafael Bravo de la Parra and   
    Juan C. López-Marcos   An analytical model of stand dynamics as
                                  a function of tree growth, mortality and
                                  recruitment: The shade tolerance-stand
                                  structure hypothesis revisited . . . . . 440--450
               G. M. Kepler and   
               H. K. Nguyen and   
        J. Webster-Cyriaque and   
                    H. T. Banks   A dynamic model for induced reactivation
                                  of latent virus  . . . . . . . . . . . . 451--462
               Simone Gupta and   
         Siddharth S. Bisht and   
          Ritushree Kukreti and   
               Sanjeev Jain and   
           Samir K. Brahmachari   Boolean network analysis of a
                                  neurotransmitter signaling pathway . . . 463--469
     Francis L. W. Ratnieks and   
      Heikki Helanterä and   
                Kevin R. Foster   Are mistakes inevitable? Sex allocation
                                  specialization by workers can reduce the
                                  genetic information needed to assess
                                  queen mating frequency . . . . . . . . . 470--477
            Gilles Gnacadja and   
       Alex Shoshitaishvili and   
         Michael J. Gresser and   
               Brian Varnum and   
              David Balaban and   
                 Mark Durst and   
               Chris Vezina and   
                          Yu Li   Monotonicity of interleukin-1
                                  receptor-ligand binding with respect to
                                  antagonist in the presence of decoy
                                  receptor . . . . . . . . . . . . . . . . 478--488
               M. A. Murado and   
           J. A. Vázquez   The notion of hormesis and the
                                  dose-response theory: a unified approach 489--499
           Jeffrey D. Gross and   
          I. Constantinidis and   
                    A. Sambanis   Modeling of encapsulated cell systems    500--510
            George T. Yates and   
                 Thomas Smotzer   On the lag phase and initial decline of
                                  microbial growth curves  . . . . . . . . 511--517
            Hisashi Ohtsuki and   
                      Yoh Iwasa   Global analyses of evolutionary dynamics
                                  and exhaustive search for social norms
                                  that maintain cooperation by reputation  518--531
                 Yanni Xiao and   
            Nigel P. French and   
            Roger G. Bowers and   
                  Damian Clancy   Pair approximations and the inclusion of
                                  indirect transmission: Theory and
                                  application to between farm transmission
                                  of Salmonella  . . . . . . . . . . . . . 532--540
              Dominique Chu and   
               Ian C. Blomfield   Orientational control is an efficient
                                  control mechanism for phase switching in
                                  the \bionameE. coli fim system . . . . . 541--551
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 365--552 (7 February 2007) . . . . ??

Journal of Theoretical Biology
Volume 244, Number 4, February 21, 2007

               Atsushi Tero and   
              Ryo Kobayashi and   
             Toshiyuki Nakagaki   A mathematical model for adaptive
                                  transport network in path finding by
                                  true slime mold  . . . . . . . . . . . . 553--564
               Ronald Petie and   
                    Mees Muller   Curvature facilitates prey fixation in
                                  predatory insect claws . . . . . . . . . 565--575
             Caroline Tolla and   
Sebastiaan A. L. M. Kooijman and   
       Jean-Christophe Poggiale   A kinetic inhibition mechanism for
                                  maintenance  . . . . . . . . . . . . . . 576--587
               Masashi Kamo and   
               Akira Sasaki and   
                     Mike Boots   The role of trade-off shapes in the
                                  evolution of parasites in spatial host
                                  populations: An approximate analytical
                                  approach . . . . . . . . . . . . . . . . 588--596
            Andreas Fritsch and   
             Christian Hellmich   `Universal' microstructural patterns in
                                  cortical and trabecular, extracellular
                                  and extravascular bone materials:
                                  Micromechanics-based prediction of
                                  anisotropic elasticity . . . . . . . . . 597--620
              Carole Knibbe and   
              Olivier Mazet and   
            Fabien Chaudier and   
         Jean-Michel Fayard and   
               Guillaume Beslon   Evolutionary coupling between the
                                  deleteriousness of gene mutations and
                                  the amount of non-coding sequences . . . 621--630
           Daniel W. Franks and   
             Thomas N. Sherratt   The evolution of multicomponent mimicry  631--639
                  Qiming Lv and   
          Jonathan W. Pitchford   Stochastic von Bertalanffy models, with
                                  applications to fish recruitment . . . . 640--655
       Michael E. Meyer-Hermann   Are T cells at the origin of B cell
                                  lymphomas? . . . . . . . . . . . . . . . 656--669
             Tatsuya Akutsu and   
         Morihiro Hayashida and   
               Wai-Ki Ching and   
                  Michael K. Ng   Control of Boolean networks: Hardness
                                  results and algorithms for tree
                                  structured networks  . . . . . . . . . . 670--679
                   E. Gilad and   
          J. von Hardenberg and   
              A. Provenzale and   
                 M. Shachak and   
                       E. Meron   A mathematical model of plants as
                                  ecosystem engineers  . . . . . . . . . . 680--691
                Huachun Wei and   
                  Rui Zhang and   
              Chunfang Wang and   
               Huiqin Zheng and   
                   Aixiu Li and   
              Kuo-Chen Chou and   
                  Dong-Qing Wei   Molecular insights of SAH enzyme
                                  catalysis and implication for inhibitor
                                  design . . . . . . . . . . . . . . . . . 692--702
           Kieran Smallbone and   
          Robert A. Gatenby and   
          Robert J. Gillies and   
            Philip K. Maini and   
              David J. Gavaghan   Metabolic changes during carcinogenesis:
                                  Potential impact on invasiveness . . . . 703--713
                 Marco Archetti   Autumn colours and the nutrient
                                  retranslocation hypothesis: a
                                  theoretical assessment . . . . . . . . . 714--721
       Mendeli H. Vainstein and   
            Ana T. C. Silva and   
            Jeferson J. Arenzon   Does mobility decrease cooperation?  . . 722--728
             Ying-Hen Hsieh and   
           Chwan-Chuan King and   
           Cathy W. S. Chen and   
               Mei-Shang Ho and   
                 Sze-Bi Hsu and   
                     Yi-Chun Wu   Impact of quarantine on the 2003 SARS
                                  outbreak: a retrospective modeling study 729--736
         Noorossadat Torabi and   
              Hani Goodarzi and   
       Hamed Shateri Najafabadi   The case for an error minimizing set of
                                  coding amino acids . . . . . . . . . . . 737--744
                      Anonymous   Author Index . . . . . . . . . . . . . . 745--747
                      Anonymous   Subject Index  . . . . . . . . . . . . . 748--754
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 553--754 (21 February 2007)  . . . ??


Journal of Theoretical Biology
Volume 245, Number 1, March 7, 2007

            Ryan Zurakowski and   
                 Dominik Wodarz   Model-driven approaches for in vitro
                                  combination therapy using ONYX-015
                                  replicating oncolytic adenovirus . . . . 1--8
            Daniel A. Vasco and   
           Helen J. Wearing and   
                  Pejman Rohani   Tracking the dynamics of pathogen
                                  interactions: Modeling ecological and
                                  immune-mediated processes in a
                                  two-pathogen single-host system  . . . . 9--25
        Jeffrey A. Fletcher and   
                   Martin Zwick   The evolution of altruism: Game theory
                                  in multilevel selection and inclusive
                                  fitness  . . . . . . . . . . . . . . . . 26--36
            Emmanuel Tannenbaum   Extracting viability landscapes from
                                  mutagen-response experiments . . . . . . 37--43
              Renata Ivanek and   
    Yrjö T. Gröhn and   
        Alphina Jui-Jung Ho and   
                Martin Wiedmann   Markov chain approach to analyze the
                                  dynamics of pathogen fecal shedding ---
                                  Example of \bionameListeria
                                  monocytogenes shedding in a herd of
                                  dairy cattle . . . . . . . . . . . . . . 44--58
             Rob W. Brooker and   
        Justin M. J. Travis and   
              Ewen J. Clark and   
                  Calvin Dytham   Modelling species' range shifts in a
                                  changing climate: The impacts of biotic
                                  interactions, dispersal distance and the
                                  rate of climate change . . . . . . . . . 59--65
                  Ximin Lin and   
           James S. Koopman and   
               Stephen E. Chick   Mathematical model comparisons of
                                  potential non-typeable Haemophilus
                                  influenzae vaccine effects . . . . . . . 66--76
             Luca Zammataro and   
               Guido Serini and   
               Todd Rowland and   
             Federico Bussolino   Embryonic cleavage modeling as a
                                  computational approach to sphere packing
                                  problem  . . . . . . . . . . . . . . . . 77--82
                 Mark P. Little   A multi-compartment cell repopulation
                                  model allowing for inter-compartmental
                                  migration following radiation exposure,
                                  applied to leukaemia . . . . . . . . . . 83--97
          Stuart R. Borrett and   
              Brian D. Fath and   
              Bernard C. Patten   Functional integration of ecological
                                  networks through pathway proliferation   98--111
           Norman F. Kirkby and   
         Sarah J. Jefferies and   
                   Raj Jena and   
                 Neil G. Burnet   A mathematical model of the treatment
                                  and survival of patients with high-grade
                                  brain tumours  . . . . . . . . . . . . . 112--124
                 Alexei Vazquez   Epidemic outbreaks on structured
                                  populations  . . . . . . . . . . . . . . 125--129
     Nebojsa T. Milosevi\'c and   
             Dusan Ristanovi\'c   The Sholl analysis of neuronal cell
                                  images: Semi-log or log-log method?  . . 130--140
             A. M. Reynolds and   
             D. R. Reynolds and   
                A. D. Smith and   
             G. P. Svensson and   
               C. Löfstedt   Appetitive flight patterns of male
                                  Agrotis segetum moths over landscape
                                  scales . . . . . . . . . . . . . . . . . 141--149
                Stephen Rothman   The incoherence of the vesicle theory of
                                  protein secretion  . . . . . . . . . . . 150--160
                     K. Walters   Modelling the probability distribution
                                  of the number of DNA double-strand
                                  breaks due to sporadic alkylation of
                                  nucleotide bases . . . . . . . . . . . . 161--168
             Marco Archetti and   
              Massimo Di Giulio   The evolution of the genetic code took
                                  place in an anaerobic environment  . . . 169--174
            Edelmira Valero and   
Manuela García-Moreno and   
      Jesualdo Masiá and   
María-José García-Meseguer and   
      Ramón Varón   Kinetic behaviour of proenzymes
                                  activation in the presence of different
                                  inhibitors for both activating and
                                  activated enzymes  . . . . . . . . . . . 175--192
            Mayuko Nakamaru and   
                      Yoh Iwasa   Corrigendum to ``The coevolution of
                                  altruism and punishment: Role of the
                                  selfish punisher'': [J. Theor. Biol. \bf
                                  240 (2006) 475--488] . . . . . . . . . . 193--196
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 1--196 (7 March 2007)  . . . . . . ??

Journal of Theoretical Biology
Volume 245, Number 2, March 21, 2007

                 E. Vautrin and   
                 S. Charles and   
                 S. Genieys and   
                       F. Vavre   Evolution and invasion dynamics of
                                  multiple infections with Wolbachia
                                  investigated using matrix based models   197--209
           Richard R. Vance and   
                Andrew L. Nevai   Plant population growth and competition
                                  in a light gradient: a mathematical
                                  model of canopy partitioning . . . . . . 210--219
            Martin Baurmann and   
                Thilo Gross and   
                  Ulrike Feudel   Instabilities in spatially extended
                                  predator-prey systems: Spatio-temporal
                                  patterns in the neighborhood of
                                  Turing-Hopf bifurcations . . . . . . . . 220--229
          Shin I. Nishimura and   
                   Masaki Sasai   Modulation of the reaction rate of
                                  regulating protein induces large
                                  morphological and motional change of
                                  amoebic cell . . . . . . . . . . . . . . 230--237
                 Yong Zhang and   
                   Xin Zhao and   
                   Peng-Ye Wang   Molecular dynamics study of the fibril
                                  elongation of the prion protein fragment
                                  PrP106-126 . . . . . . . . . . . . . . . 238--242
            Ryan Gutenkunst and   
         Nathaniel Newlands and   
            Molly Lutcavage and   
          Leah Edelstein-Keshet   Inferring resource distributions from
                                  Atlantic bluefin tuna movements: An
                                  analysis based on net displacement and
                                  length of track  . . . . . . . . . . . . 243--257
                 Stephen Le and   
                    Robert Boyd   Evolutionary dynamics of the continuous
                                  iterated Prisoner's dilemma  . . . . . . 258--267
             Sami Merilaita and   
               Graeme D. Ruxton   Aposematic signals and the relationship
                                  between conspicuousness and
                                  distinctiveness  . . . . . . . . . . . . 268--277
            M. Bahman Bahramian   Coupling of transcription termination to
                                  RNAi . . . . . . . . . . . . . . . . . . 278--289
                     Z. Xie and   
                    D. Kulasiri   Modelling of circadian rhythms in
                                  Drosophila incorporating the interlocked
                                  PER/TIM and VRI/PDP1 feedback loops  . . 290--304
              Kheng Lim Goh and   
           Judith R. Meakin and   
          Richard M. Aspden and   
             David W. L. Hukins   Stress transfer in collagen fibrils
                                  reinforcing connective tissues: Effects
                                  of collagen fibril slenderness and
                                  relative stiffness . . . . . . . . . . . 305--311
                    Hao Guo and   
                Chong Zheng and   
          Elizabeth R. Gaillard   Computational studies for the structure
                                  and function of mRPE65 . . . . . . . . . 312--318
            Sachi Yamaguchi and   
                 Yuki Ozaki and   
                Yoichi Yusa and   
              Satoshi Takahashi   Do tiny males grow up? Sperm competition
                                  and optimal resource allocation schedule
                                  of dwarf males of barnacles  . . . . . . 319--328
                Wayne S. Kendal   Scale invariant correlations between
                                  genes and SNPs on Human chromosome 1
                                  reveal potential evolutionary mechanisms 329--340
                  Hal Whitehead   Learning, climate and the evolution of
                                  cultural capacity  . . . . . . . . . . . 341--350
      Rachata Muneepeerakul and   
            Joshua S. Weitz and   
             Simon A. Levin and   
             Andrea Rinaldo and   
       Ignacio Rodriguez-Iturbe   A neutral metapopulation model of
                                  biodiversity in river networks . . . . . 351--363
               Satoshi Kato and   
               Jotaro Urabe and   
                Masakado Kawata   Effects of temporal and spatial
                                  heterogeneities created by
                                  consumer-driven nutrient recycling on
                                  algal diversity  . . . . . . . . . . . . 364--377
                Rodrick Wallace   Culture and inattentional blindness: a
                                  global workspace perspective . . . . . . 378--390
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 197--390 (21 March 2007) . . . . . ??

Journal of Theoretical Biology
Volume 245, Number 3, April 7, 2007

       Ezequiel Franco-Lara and   
              Dirk Weuster-Botz   Application of fuzzy-logic models for
                                  metabolic control analysis . . . . . . . 391--399
        Javier Macía and   
          Ricard V. Solé   Protocell self-reproduction in a
                                  spatially extended metabolism-vesicle
                                  system . . . . . . . . . . . . . . . . . 400--410
                 Lee Worden and   
                 Simon A. Levin   Evolutionary escape from the prisoner's
                                  dilemma  . . . . . . . . . . . . . . . . 411--422
          Carlotta Martelli and   
           Andrea Giansanti and   
                 Ivan Arisi and   
                Vittorio Rosato   Asymptotic states and topological
                                  structure of an activation-deactivation
                                  chemical network . . . . . . . . . . . . 423--432
            Maximino Aldana and   
            Enrique Balleza and   
            Stuart Kauffman and   
               Osbaldo Resendiz   Robustness and evolvability in genetic
                                  regulatory networks  . . . . . . . . . . 433--448
                 Dominik Wodarz   Effect of stem cell turnover rates on
                                  protection against cancer and aging  . . 449--458
               Rachel Kuske and   
           Luis F. Gordillo and   
            Priscilla Greenwood   Sustained oscillations via coherence
                                  resonance in SIR . . . . . . . . . . . . 459--469
              E. S. McBryde and   
              A. N. Pettitt and   
              D. L. S. McElwain   A stochastic mathematical model of
                                  methicillin resistant Staphylococcus
                                  aureus transmission in an intensive care
                                  unit: Predicting the impact of
                                  interventions  . . . . . . . . . . . . . 470--481
         Yael Artzy-Randrup and   
               Ronen Olinky and   
                     Lewi Stone   Size-structured demographic models of
                                  coral populations  . . . . . . . . . . . 482--497
       Dobromir T. Dimitrov and   
           Thomas G. Hallam and   
       Charles E. Rupprecht and   
            Amy S. Turmelle and   
              Gary F. McCracken   Integrative models of bat rabies
                                  immunology, epizootiology and disease
                                  demography . . . . . . . . . . . . . . . 498--509
                Jinhui Wang and   
               Xudong Huang and   
                  Weidong Huang   A quantitative kinetic model for
                                  ATP-induced intracellular Ca$^{2+}$
                                  oscillations . . . . . . . . . . . . . . 510--519
                Lena Edlund and   
                    Evelyn Korn   Hermaphroditism: What's not to like? . . 520--527
            Mark Bebbington and   
              Chin-Diew Lai and   
               Ricardas Zitikis   Modeling human mortality using mixtures
                                  of bathtub shaped failure distributions  528--538
            Shinsuke Suzuki and   
                   Eizo Akiyama   Evolution of indirect reciprocity in
                                  groups of various sizes and comparison
                                  with direct reciprocity  . . . . . . . . 539--552
Tamara Münkemüller and   
                    Karin Johst   How does intraspecific density
                                  regulation influence metapopulation
                                  synchrony and persistence? . . . . . . . 553--563
              Friederike Mengel   The evolution of function-valued traits
                                  for conditional cooperation  . . . . . . 564--575
                Anna Q. Cai and   
           Kerry A. Landman and   
                Barry D. Hughes   Multi-scale modeling of a wound-healing
                                  cell migration assay . . . . . . . . . . 576--594
                 Marco Archetti   Colour preference as evidence for the
                                  theories on the evolution of autumn
                                  colours  . . . . . . . . . . . . . . . . 595--596
                  Andrew Gelman   Letter to the editors regarding some
                                  papers of Dr. Satoshi Kanazawa . . . . . 597--599
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 391--600 (7 April 2007)  . . . . . ??

Journal of Theoretical Biology
Volume 245, Number 4, April 21, 2007

            Simone K. Heinz and   
           Christian Wissel and   
            Larissa Conradt and   
                    Karin Frank   Integrating individual movement
                                  behaviour into dispersal functions . . . 601--609
               Scott Hotton and   
                 Mike E. Colvin   Analytic formulas for discrete
                                  stochastic models of cell populations
                                  with both differentiation and
                                  de-differentiation . . . . . . . . . . . 610--626
           Sarah E. Geneser and   
            Robert M. Kirby and   
                Dongbin Xiu and   
                Frank B. Sachse   Stochastic Markovian modeling of
                                  electrophysiology of ion channels:
                                  Reconstruction of standard deviations in
                                  macroscopic currents . . . . . . . . . . 627--637
          Stefan Braunewell and   
               Stefan Bornholdt   Superstability of the yeast cell-cycle
                                  dynamics: Ensuring causality in the
                                  presence of biochemical stochasticity    638--643
                Kozo Nagano and   
                  Nozomi Nagano   Mechanism of translation based on
                                  intersubunit complementarities of
                                  ribosomal RNAs and tRNAs . . . . . . . . 644--668
                  Brynja Kohler   Mathematically modeling dynamics of T
                                  cell responses: Predictions concerning
                                  the generation of memory cells . . . . . 669--676
               Paul Macklin and   
                 John Lowengrub   Nonlinear simulation of the effect of
                                  microenvironment on tumor growth . . . . 677--704
      Carey K. Bagdassarian and   
              Amy E. Dunham and   
       Christopher G. Brown and   
                Daniel Rauscher   Biodiversity maintenance in food webs
                                  with regulatory environmental feedbacks  705--714
              Hani Goodarzi and   
           Ali Katanforoush and   
         Noorossadat Torabi and   
       Hamed Shateri Najafabadi   Solvent accessibility, residue charge
                                  and residue volume, the three
                                  ingredients of a robust amino acid
                                  substitution matrix  . . . . . . . . . . 715--725
                 Dawei Hong and   
          William M. Saidel and   
              Shushuang Man and   
               Joseph V. Martin   Extracellular noise-induced stochastic
                                  synchronization in heterogeneous quorum
                                  sensing network  . . . . . . . . . . . . 726--736
           A. Rami Tzafriri and   
              Elazer R. Edelman   Quasi-steady-state kinetics at enzyme
                                  and substrate concentrations in excess
                                  of the Michaelis--Menten constant  . . . 737--748
                 J. W. King and   
                K. Ruohonen and   
                D. J. Grove and   
                 A. Hammerstein   Nonlinear time series analysis of food
                                  intake in the dab and the rainbow trout  749--762
          Tobias van Kooten and   
            Lennart Persson and   
        André M. de Roos   Population dynamical consequences of
                                  gregariousness in a size-structured
                                  consumer-resource interaction  . . . . . 763--774
               Ying-Li Chen and   
                  Qian-Zhong Li   Prediction of the subcellular location
                                  of apoptosis proteins  . . . . . . . . . 775--783
 Paulo. R. Guimarães and   
         Roberta M. Bonaldo and   
   João P. Krajewski and   
     Paulo Guimarães and   
  Alu\'ìsio Pinheiro and   
              Joseph Powers and   
 Sérgio Furtado dos Reis   Investigating small fish schools:
                                  Selection of school-formation models by
                                  means of general linear models and
                                  numerical simulations  . . . . . . . . . 784--789
             Yun-Huei Tzeng and   
              Wen-Hsiung Li and   
              Trees-Juen Chuang   Mathematical properties of some measures
                                  of evolutionary distance . . . . . . . . 790--792
                      Anonymous   Author Index . . . . . . . . . . . . . . 793--795
                      Anonymous   Subject Index  . . . . . . . . . . . . . 796--803
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 601--804 (21 April 2007) . . . . . ??


Journal of Theoretical Biology
Volume 246, Number 1, May 7, 2007

                  Emi Shudo and   
                   Jin Yang and   
          Akihiko Yoshimura and   
                      Yoh Iwasa   Robustness of the signal transduction
                                  system of the mammalian JAK/STAT pathway
                                  and dimerization steps . . . . . . . . . 1--9
                E. O. Jones and   
                   A. White and   
                       M. Boots   Interference and the persistence of
                                  vertically transmitted parasites . . . . 10--17
              Lora Billings and   
            Ira B. Schwartz and   
               Leah B. Shaw and   
              Marie McCrary and   
            Donald S. Burke and   
           Derek A. T. Cummings   Instabilities in multiserotype disease
                                  models with antibody-dependent
                                  enhancement  . . . . . . . . . . . . . . 18--27
                Xiaoli Feng and   
                  Yuxiao Li and   
               Jianzhong Gu and   
               Yizhong Zhuo and   
                    Huijie Yang   Error thresholds for quasispecies on
                                  single peak Gaussian-distributed fitness
                                  landscapes . . . . . . . . . . . . . . . 28--32
               Peter S. Kim and   
               Peter P. Lee and   
                     Doron Levy   Modeling regulation mechanisms in the
                                  immune system  . . . . . . . . . . . . . 33--69
            Baris Hancioglu and   
               David Swigon and   
                Gilles Clermont   A dynamical model of human immune
                                  response to influenza A virus infection  70--86
                      S. Na and   
            G. A. Meininger and   
                 J. D. Humphrey   A theoretical model for F-actin
                                  remodeling in vascular smooth muscle
                                  cells subjected to cyclic stretch  . . . 87--99
             Sung Joon Moon and   
                   B. Nabet and   
           Naomi E. Leonard and   
             Simon A. Levin and   
               I. G. Kevrekidis   Heterogeneous animal group models and
                                  their group-level alignment dynamics: An
                                  equation-free approach . . . . . . . . . 100--112
   Alexander Y. Mitrophanov and   
          Gordon Churchward and   
                Mark Borodovsky   Control of \bionameStreptococcus
                                  pyogenes virulence: Modeling of the
                                  CovR/S signal transduction system  . . . 113--128
             Magnus Enquist and   
              Stefano Ghirlanda   Evolution of social learning does not
                                  explain the origin of human cumulative
                                  culture  . . . . . . . . . . . . . . . . 129--135
          David E. Hiebeler and   
              Benjamin R. Morin   The effect of static and dynamic
                                  spatially structured disturbances on a
                                  locally dispersing population  . . . . . 136--144
                Peter Hinow and   
                 Erik M. Boczko   Molecular seismology: An inverse problem
                                  in nanobiology . . . . . . . . . . . . . 145--158
           Samad Jahandideh and   
         Parviz Abdolmaleki and   
            Mina Jahandideh and   
    Ebrahim Barzegari Asadabadi   Sequence and structural parameters
                                  enhancing adaptation of proteins to low
                                  temperatures . . . . . . . . . . . . . . 159--166
       Marcio S. de Queiroz and   
              Grover L. Waldrop   Modeling and numerical simulation of
                                  biotin carboxylase kinetics:
                                  Implications for half-sites reactivity   167--175
                D. J. Raine and   
                      V. Norris   Lipid domain boundaries as prebiotic
                                  catalysts of peptide bond formation  . . 176--185
            Vincent Moulton and   
             Charles Semple and   
                     Mike Steel   Optimizing phylogenetic diversity under
                                  constraints  . . . . . . . . . . . . . . 186--194
           Tsutomu Takeuchi and   
         Takamichi Hinohara and   
               Gen Kurosawa and   
                   Kenko Uchida   A temperature-compensated model for
                                  circadian rhythms that can be entrained
                                  by temperature cycles  . . . . . . . . . 195--204
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--204 (7 May 2007)  . . . . . . . ??

Journal of Theoretical Biology
Volume 246, Number 2, May 21, 2007

              G. Hartvigsen and   
               J. M. Dresch and   
            A. L. Zielinski and   
               A. J. Macula and   
                    C. C. Leary   Network structure, and vaccination
                                  strategy and effort interact to affect
                                  the dynamics of influenza epidemics  . . 205--213
         L. Olivares-Quiroz and   
             L. S. Garcia-Colin   Protein's native state stability in a
                                  chemically induced denaturation
                                  mechanism  . . . . . . . . . . . . . . . 214--224
        Matina C. Donaldson and   
           Michael Lachmann and   
              Carl T. Bergstrom   The evolution of functionally
                                  referential meaning in a structured
                                  world  . . . . . . . . . . . . . . . . . 225--233
                      K. Qu and   
              A. Abi Haidar and   
                     J. Fan and   
                  L. Ensman and   
                  K. Tuncay and   
                   M. Jolly and   
                    P. Ortoleva   Cancer onset and progression: a
                                  genome-wide, nonlinear dynamical systems
                                  perspective on onconetworks  . . . . . . 234--244
            Heiko Enderling and   
        Mark A. J. Chaplain and   
   Alexander R. A. Anderson and   
               Jayant S. Vaidya   A mathematical model of breast cancer
                                  development, local treatment and
                                  recurrence . . . . . . . . . . . . . . . 245--259
                 J. Camacho and   
             D. B. Stouffer and   
                L. A. N. Amaral   Quantitative analysis of the local
                                  structure of food webs . . . . . . . . . 260--268
                   C. Jolly and   
              A. J. L. Cook and   
                 J. Raferty and   
                    M. E. Jones   Measuring bidirectional mutation . . . . 269--277
           C. A. Klausmeier and   
                E. Litchman and   
                    S. A. Levin   A model of flexible uptake of two
                                  essential resources  . . . . . . . . . . 278--289
                F. Llaneras and   
                 J. Picó   An interval approach for dealing with
                                  flux distributions and elementary modes
                                  activity patterns  . . . . . . . . . . . 290--308
                     Song Cheng   Lorentzian model of roots for understory
                                  yellow birch and sugar maple saplings    309--322
              Hiroshi Haeno and   
                      Yoh Iwasa   Probability of resistance evolution for
                                  exponentially growing virus in the host  323--331
           Marco A. Huertas and   
               Gregory D. Smith   The dynamics of luminal depletion and
                                  the stochastic gating of
                                  Ca$^{2+}$-activated Ca$^{2+}$ channels
                                  and release sites  . . . . . . . . . . . 332--354
                  John K. Kelly   Mutation-selection balance in mixed
                                  mating populations . . . . . . . . . . . 355--365
             J. David Logan and   
             William Wolesensky   An index to measure the effects of
                                  temperature change on trophic
                                  interactions . . . . . . . . . . . . . . 366--376
                R. Miftahof and   
                   N. Akhmadeev   Dynamics of intestinal propulsion  . . . 377--393
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 205--394 (21 May 2007) . . . . . . ??

Journal of Theoretical Biology
Volume 246, Number 3, June 7, 2007

            Stefanie Widder and   
              Josef Schicho and   
                 Peter Schuster   Dynamic patterns of gene regulation I:
                                  Simple two-gene systems  . . . . . . . . 395--419
          Philip H. Crowley and   
                   Mary K. Hart   Evolutionary stability of egg trading
                                  and parceling in simultaneous
                                  hermaphrodites: The chalk bass revisited 420--429
                H. Croisier and   
                    P. C. Dauby   Continuation and bifurcation analysis of
                                  a periodically forced excitable system   430--448
                   R. Serra and   
                 M. Villani and   
               A. Graudenzi and   
                 S. A. Kauffman   Why a simple model of genetic regulatory
                                  networks describes the distribution of
                                  avalanches in gene expression data . . . 449--460
           Olaf Wolkenhauer and   
         Jan-Hendrik S. Hofmeyr   An abstract cell model that describes
                                  the self-organization of cell function
                                  in living systems  . . . . . . . . . . . 461--476
                 Stefan Berking   Generation of bilateral symmetry in
                                  Anthozoa: a model  . . . . . . . . . . . 477--490
            Armand Bankhead and   
          Nancy S. Magnuson and   
           Robert B. Heckendorn   Cellular automaton simulation examining
                                  progenitor hierarchy structure effects
                                  on mammary ductal carcinoma in situ  . . 491--498
               O. Krakovska and   
                     L. M. Wahl   Optimal drug treatment regimens for HIV
                                  depend on adherence  . . . . . . . . . . 499--509
                Diego Medan and   
      Roberto P. J. Perazzo and   
             Mariano Devoto and   
             Enrique Burgos and   
Mart\'ìn G. Zimmermann and   
               Horacio Ceva and   
                  Ana M. Delbue   Analysis and assembling of network
                                  structure in mutualistic systems . . . . 510--521
              Arne Traulsen and   
           Jorge M. Pacheco and   
                Martin A. Nowak   Pairwise comparison and selection
                                  temperature in evolutionary game
                                  dynamics . . . . . . . . . . . . . . . . 522--529
             Norio Yamamura and   
              Noboru Fujita and   
           Motoyuki Hayashi and   
            Yusuke Nakamura and   
               Atsushi Yamauchi   Optimal phenology of annual plants under
                                  grazing pressure . . . . . . . . . . . . 530--537
                Takuyo Aita and   
              Yuuki Hayashi and   
             Hitoshi Toyota and   
              Yuzuru Husimi and   
                Itaru Urabe and   
                   Tetsuya Yomo   Extracting characteristic properties of
                                  fitness landscape from in vitro
                                  molecular evolution: a case study on
                                  infectivity of fd phage to \bionameE.
                                  coli . . . . . . . . . . . . . . . . . . 538--550
            Matthijs van Veelen   Hamilton's missing link  . . . . . . . . 551--554
                Hiromi Seno and   
                    Hiromi Endo   A mathematical model on the optimal
                                  timing of offspring desertion  . . . . . 555--563
                  Amita Pal and   
       Arunabha Chakrabarti and   
                    Jolly Basak   New motifs within the NB-ARC domain of R
                                  proteins: Probable mechanisms of
                                  integration of geminiviral signatures
                                  within the host species of
                                  \bionameFabaceae family and implications
                                  in conferring disease resistance . . . . 564--573
            Anindita Bhadra and   
              Priya L. Iyer and   
                  A. Sumana and   
        Sujata A. Deshpande and   
              Saubhik Ghosh and   
           Raghavendra Gadagkar   How do workers of the primitively
                                  eusocial wasp Ropalidia marginata detect
                                  the presence of their queens?  . . . . . 574--582
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 395--582 (7 June 2007) . . . . . . ??

Journal of Theoretical Biology
Volume 246, Number 4, June 21, 2007

                  P. Gerlee and   
              A. R. A. Anderson   An evolutionary hybrid cellular
                                  automaton model of solid tumour growth   583--603
           John H. Schwacke and   
               Eberhard O. Voit   The potential for signal integration and
                                  processing in interacting MAP kinase
                                  cascades . . . . . . . . . . . . . . . . 604--620
             David B. Chang and   
                  Carl S. Young   Simple scaling laws for influenza A rise
                                  time, duration, and severity . . . . . . 621--635
              Martin O'Hely and   
                  Leesa Wockner   Models for loosely linked gene
                                  duplicates suggest lengthy persistence
                                  of both copies . . . . . . . . . . . . . 636--645
               Shingo Iwami and   
          Yasuhiro Takeuchi and   
            Yoshiharu Miura and   
                Toru Sasaki and   
              Tsuyoshi Kajiwara   Dynamical properties of autoimmune
                                  disease models: Tolerance, flare-up,
                                  dormancy . . . . . . . . . . . . . . . . 646--659
         John R. Hutchinson and   
        Victor Ng-Thow-Hing and   
              Frank C. Anderson   A 3D interactive method for estimating
                                  body segmental parameters in animals:
                                  Application to the turning and running
                                  performance of Tyrannosaurus rex . . . . 660--680
            Hisashi Ohtsuki and   
           Jorge M. Pacheco and   
                Martin A. Nowak   Evolutionary graph theory: Breaking the
                                  symmetry between interaction and
                                  replacement  . . . . . . . . . . . . . . 681--694
               Akiko Satake and   
          Heather M. Leslie and   
                  Yoh Iwasa and   
                 Simon A. Levin   Coupled ecological-social dynamics in a
                                  forested landscape: Spatial interactions
                                  and information flow . . . . . . . . . . 695--707
               Valerie J. Grant   Could maternal testosterone levels
                                  govern mammalian sex ratio deviations?   708--719
            Roger Härdling   Fairness evolution in the ultimatum game
                                  is a function of reward size . . . . . . 720--724
                    Rui Zhu and   
           Andre S. Ribeiro and   
             Dennis Salahub and   
             Stuart A. Kauffman   Studying genetic regulatory networks at
                                  the molecular level: Delayed reaction
                                  stochastic models  . . . . . . . . . . . 725--745
                 Shin Fukui and   
             Takema Fukatsu and   
            Takashi Ikegami and   
               Masakazu Shimada   Endosymbiosis as a compact ecosystem
                                  with material cycling: Parasitism or
                                  mutualism? . . . . . . . . . . . . . . . 746--754
               Zhangang Han and   
        Thomas M. Vondriska and   
                  Ling Yang and   
          W. Robb MacLellan and   
             James N. Weiss and   
                      Zhilin Qu   Signal transduction network motifs and
                                  biological memory  . . . . . . . . . . . 755--761
                      Anonymous   Author Index . . . . . . . . . . . . . . 762--764
                      Anonymous   Subject Index  . . . . . . . . . . . . . 765--771
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 583--772 (21 June 2007)  . . . . . ??


Journal of Theoretical Biology
Volume 247, Number 1, July 7, 2007

                 Ydo Wexler and   
                 Oleg Rokhlenko   Prisoner's dilemma posed by
                                  fitness-associated recombination
                                  strategies . . . . . . . . . . . . . . . 1--10
 Jean-Baptiste André and   
                       Troy Day   Perfect reciprocity is the only
                                  evolutionarily stable strategy in the
                                  continuous iterated prisoner's dilemma   11--22
            Stanca M. Ciupe and   
             Ruy M. Ribeiro and   
          Patrick W. Nelson and   
               Alan S. Perelson   Modeling the mechanisms of acute
                                  hepatitis B virus infection  . . . . . . 23--35
           John M. Anderies and   
           Madhusudan Katti and   
                   Eyal Shochat   Living in the city: Resource
                                  availability, predation, and bird
                                  population dynamics in urban areas . . . 36--49
                   S. Ghosh and   
               S. Bhattacharyya   Effect of temperature on viral infection
                                  and its control: a mathematical approach 50--63
            Hannah M. Lewis and   
                    Richard Law   Effects of dynamics on ecological
                                  networks . . . . . . . . . . . . . . . . 64--76
 Ingeborg M. M. van Leeuwen and   
             Helen M. Byrne and   
           Oliver E. Jensen and   
                   John R. King   Elucidating the interactions between the
                                  adhesive and transcriptional functions
                                  of $ \beta $-catenin in normal and
                                  cancerous cells  . . . . . . . . . . . . 77--102
                     Qi Dai and   
              Xiao-qing Liu and   
                 Tian-ming Wang   C(i,j) matrix: a better numerical
                                  characterization for graphical
                                  representations of biological sequences  103--109
                  N. Kurochkina   Amino acid composition of parallel
                                  helix-helix interfaces . . . . . . . . . 110--121
                 Kalet Leon and   
              Karina Garcia and   
             Jorge Carneiro and   
                   Agustin Lage   How regulatory CD25 + CD4 + T cells
                                  impinge on tumor immunobiology? On the
                                  existence of two alternative dynamical
                                  classes of tumors  . . . . . . . . . . . 122--137
            Kazumoto Iguchi and   
         Shu-ichi Kinoshita and   
              Hiroaki S. Yamada   Boolean dynamics of Kauffman models with
                                  a scale-free network . . . . . . . . . . 138--151
        Chrisantha Fernando and   
                  Jonathan Rowe   Natural selection in chemical evolution  152--167
                C. Pagnutti and   
                  M. Azzouz and   
                       M. Anand   Propagation of local interactions create
                                  global gap structure and dynamics in a
                                  tropical rainforest  . . . . . . . . . . 168--181
          J. R. C. Piqueira and   
               G. M. Fagali and   
                M. de Pinho and   
              R. F. Sanches and   
              C. M. Del-Ben and   
                   A. W. Zuardi   Bits and q-bits in a psychiatric ward    182--185
           Katarzyna A. Rejniak   An immersed boundary framework for
                                  modelling the growth of individual
                                  cells: An application to the early
                                  tumour development . . . . . . . . . . . 186--204
            Jordi Bascompte and   
              Bartolo Luque and   
               Jose Olarrea and   
                   Lucas Lacasa   A probabilistic model of reserve design  205--211
            Edelmira Valero and   
Manuela García-Moreno and   
      Jesualdo Masiá and   
María-José García-Meseguer and   
      Ramón Varón   Corrigendum to ``Kinetic behaviour of
                                  proenzymes activation in the presence of
                                  different inhibitors for both activating
                                  and activated enzymes'': [J. Theor.
                                  Biol. \bf 245 (2007) 175--192] . . . . . 212--212
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--212 (7 July 2007) . . . . . . . ??

Journal of Theoretical Biology
Volume 247, Number 2, July 21, 2007

              Van M. Savage and   
            Colleen T. Webb and   
                    Jon Norberg   A general multi-trait-based framework
                                  for studying the effects of biodiversity
                                  on ecosystem functioning . . . . . . . . 213--229
              M. R. Bennett and   
                 L. Farnell and   
               W. G. Gibson and   
                     P. Dickens   Mechanisms of calcium sequestration
                                  during facilitation at active zones of
                                  an amphibian neuromuscular junction  . . 230--241
                Ron Skupsky and   
               Colin McCann and   
               Ralph Nossal and   
                Wolfgang Losert   Bias in the gradient-sensing response of
                                  chemotactic cells  . . . . . . . . . . . 242--258
                    Xian Pu and   
                   Jian Guo and   
               Howard Leung and   
                    Yuanlie Lin   Prediction of membrane protein types
                                  from sequences and position-specific
                                  scoring matrices . . . . . . . . . . . . 259--265
               Bree Cummins and   
        Tomás Gedeon and   
              Isaac Klapper and   
                 Ricardo Cortez   Interaction between arthropod filiform
                                  hairs in a fluid environment . . . . . . 266--280
              Motohide Seki and   
        Joe Yuichiro Wakano and   
                    Yasuo Ihara   A theoretical study on the evolution of
                                  male parental care and female multiple
                                  mating: Effects of female mate choice
                                  and male care bias . . . . . . . . . . . 281--296
           Marshall Hampton and   
             Matthew T. Andrews   A simple molecular mathematical model of
                                  mammalian hibernation  . . . . . . . . . 297--302
            Isabel Reinecke and   
                Peter Deuflhard   A complex mathematical model of the
                                  human menstrual cycle  . . . . . . . . . 303--330
          Miguel A. Fortuna and   
        Carlos J. Melián   Do scale-free regulatory networks allow
                                  more expression than random ones?  . . . 331--336
           Gabriel L. Maser and   
Frédéric Guichard and   
                Kevin S. McCann   Weak trophic interactions and the
                                  balance of enriched metacommunities  . . 337--345
             Anand Anbarasu and   
              Rao Sethumadhavan   Exploring the role of cation--$ \pi $
                                  interactions in glycoproteins
                                  lipid-binding proteins and RNA-binding
                                  proteins . . . . . . . . . . . . . . . . 346--353
               Junji Konuma and   
                  Satoshi Chiba   Ecological character displacement caused
                                  by reproductive interference . . . . . . 354--364
                  Frans L. Roes   Outside opportunities and costs incurred
                                  by others  . . . . . . . . . . . . . . . 365--370
               Harel Dahari and   
                  Arthur Lo and   
             Ruy M. Ribeiro and   
               Alan S. Perelson   Modeling hepatitis C virus dynamics:
                                  Liver regeneration and critical drug
                                  efficacy . . . . . . . . . . . . . . . . 371--381
                 Geoff Wild and   
                  Arne Traulsen   The different limits of weak selection
                                  and the evolutionary dynamics of finite
                                  populations  . . . . . . . . . . . . . . 382--390
            Jean-Luc Jestin and   
        Christophe Soulé   Symmetries by base substitutions in the
                                  genetic code predict 2' or 3'
                                  aminoacylation of tRNAs  . . . . . . . . 391--394
               William H. James   Support for a hypothesis on the
                                  offspring sex ratios of hepatitis B
                                  carriers . . . . . . . . . . . . . . . . 395--395
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 213--396 (21 July 2007)  . . . . . ??

Journal of Theoretical Biology
Volume 247, Number 3, August 7, 2007

              Gilles Saint-Paul   On market forces and human evolution . . 397--412
            Emmanuel Tannenbaum   When does division of labor lead to
                                  increased system output? . . . . . . . . 413--425
            Sevan G. Ficici and   
              Jordan B. Pollack   Evolutionary dynamics of finite
                                  populations in games with polymorphic
                                  fitness equilibria . . . . . . . . . . . 426--441
         Evgeni V. Nikolaev and   
            Jordan C. Atlas and   
              Michael L. Shuler   Sensitivity and control analysis of
                                  periodically forced reaction networks
                                  using the Green's function method  . . . 442--461
            Hisashi Ohtsuki and   
                Martin A. Nowak   Direct reciprocity on graphs . . . . . . 462--470
            Andrew L. Nevai and   
            Thomas A. Waite and   
               Kevin M. Passino   State-dependent choice and ecological
                                  rationality  . . . . . . . . . . . . . . 471--479
              Marco Uttieri and   
           Daniela Cianelli and   
          J. Rudi Strickler and   
              Enrico Zambianchi   On the relationship between fractal
                                  dimension and encounters in
                                  three-dimensional trajectories . . . . . 480--491
             J. V. Greenman and   
                   R. A. Norman   Environmental forcing, invasion and
                                  control of ecological and
                                  epidemiological systems  . . . . . . . . 492--506
                    Hui Wan and   
                    Jing'an Cui   An SEIS epidemic model with
                                  transport-related infection  . . . . . . 507--524
         Matthew J. Simpson and   
           Kerry A. Landman and   
          Kaushik Bhaganagarapu   Coalescence of interacting cell
                                  populations  . . . . . . . . . . . . . . 525--543
      Günter P. Wagner and   
              Wolfgang Otto and   
              Vincent Lynch and   
               Peter F. Stadler   A stochastic model for the evolution of
                                  transcription factor binding site
                                  abundance  . . . . . . . . . . . . . . . 544--553
            Gernot Schaller and   
          Michael Meyer-Hermann   A modelling approach towards epidermal
                                  homoeostasis control . . . . . . . . . . 554--573
            Lorens A. Imhof and   
             Drew Fudenberg and   
                Martin A. Nowak   Tit-for-tat or win-stay, lose-shift? . . 574--580
               Paul Macklin and   
                 John Lowengrub   Erratum to ``Nonlinear simulation of the
                                  effect of microenvironment on tumor
                                  growth'': [J. Theor. Biol. \bf 245
                                  (2007) 677--704] . . . . . . . . . . . . 581--581
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 397--582 (7 August 2007) . . . . . ??

Journal of Theoretical Biology
Volume 247, Number 4, August 21, 2007

     Melissa A. St. Hilaire and   
       Elizabeth B. Klerman and   
          Sat Bir S. Khalsa and   
          Kenneth P. Wright and   
        Charles A. Czeisler and   
            Richard E. Kronauer   Addition of a non-photic component to a
                                  light-based mathematical model of the
                                  human circadian pacemaker  . . . . . . . 583--599
               Ryan A. Chisholm   Sampling species abundance
                                  distributions: Resolving the veil-line
                                  debate . . . . . . . . . . . . . . . . . 600--607
                Yuanbo Diao and   
                Menglong Li and   
                 Zinan Feng and   
                Jiajian Yin and   
                         Yi Pan   The community structure of human
                                  cellular signaling network . . . . . . . 608--615
            Joe Yuichiro Wakano   Evolution of cooperation in spatial
                                  public goods games with common resource
                                  dynamics . . . . . . . . . . . . . . . . 616--622
            Erin R. Higgins and   
                Pranay Goel and   
            Jose L. Puglisi and   
             Donald M. Bers and   
               Mark Cannell and   
                    James Sneyd   Modelling calcium microdomains using
                                  homogenisation . . . . . . . . . . . . . 623--644
               Fangcui Zhao and   
                Huijie Yang and   
                  Binghong Wang   Complexities of human promoter sequences 645--649
       Joanna Szymanowska-Pulka   Application of a changing field of
                                  growth rates to a description of root
                                  apex formation . . . . . . . . . . . . . 650--656
                    Makoto Iima   A two-dimensional aerodynamic model of
                                  freely flying insects  . . . . . . . . . 657--671
                 P. Gaspard and   
                   E. Gerritsma   The stochastic chemomechanics of the F1
                                  -ATPase molecular motor  . . . . . . . . 672--686
             Changchuan Yin and   
              Stephen S.-T. Yau   Prediction of protein coding regions by
                                  the $3$-base periodicity analysis of a
                                  DNA sequence . . . . . . . . . . . . . . 687--694
                    Atul Narang   Effect of DNA looping on the induction
                                  kinetics of the lac operon . . . . . . . 695--712
             Satoshi Uchida and   
                Barbara Drossel   Relation between complexity and
                                  stability in food webs with adaptive
                                  behavior . . . . . . . . . . . . . . . . 713--722
             F. Castiglione and   
                     B. Piccoli   Cancer immunotherapy, mathematical
                                  modeling and optimal control . . . . . . 723--732
             Abhyudai Singh and   
                Roger M. Nisbet   Semi-discrete host-parasitoid models . . 733--742
           Andre S. Ribeiro and   
             Stuart A. Kauffman   Noisy attractors and ergodic sets in
                                  models of gene regulatory networks . . . 743--755
                   Jun Tanimoto   Does a tag system effectively support
                                  emerging cooperation?  . . . . . . . . . 756--764
            Caroline Colijn and   
                  Ted Cohen and   
                   Megan Murray   Emergent heterogeneity in declining
                                  tuberculosis epidemics . . . . . . . . . 765--774
               Martin Kroon and   
           Gerhard A. Holzapfel   A model for saccular cerebral aneurysm
                                  growth by collagen fibre remodelling . . 775--787
               Lasse Loepfe and   
     Jordi Martinez-Vilalta and   
         Josep Piñol and   
            Maurizio Mencuccini   The relevance of xylem network structure
                                  for plant hydraulic efficiency and
                                  safety . . . . . . . . . . . . . . . . . 788--803
                 Libin Rong and   
       Michael A. Gilchrist and   
                Zhilan Feng and   
               Alan S. Perelson   Modeling within-host HIV-1 dynamics and
                                  the evolution of drug resistance:
                                  Trade-offs between viral enzyme function
                                  and drug susceptibility  . . . . . . . . 804--818
    Josep L. Garcia-Domingo and   
            Joan Saldaña   Food-web complexity emerging from
                                  ecological dynamics on adaptive networks 819--826
                     Yi Tao and   
              Xiudeng Zheng and   
                     Yuehua Sun   Effect of feedback regulation on
                                  stochastic gene expression . . . . . . . 827--836
            Blaise Faugeras and   
                  Olivier Maury   Modeling fish population movements: From
                                  an individual-based representation to an
                                  advection-diffusion equation . . . . . . 837--848
               A. J. McKane and   
                      D. Waxman   Singular solutions of the diffusion
                                  equation of population genetics  . . . . 849--858
                 Robert W. Korn   Watermelon Stripes. A Case for the
                                  Clonal Mosaic Model in Plants  . . . . . 859--861
                   C. Jolly and   
              A. J. L. Cook and   
                 J. Raftery and   
                    M. E. Jones   Corrigendum to ``Measuring bidirectional
                                  mutation'': [J. Theor. Biol. \bf 246
                                  (2006) 269--277] . . . . . . . . . . . . 862--862
                      Anonymous   Author Index . . . . . . . . . . . . . . 863--865
                      Anonymous   Subject Index  . . . . . . . . . . . . . 866--872
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 583--872 (21 August 2007)  . . . . ??


Journal of Theoretical Biology
Volume 248, Number 1, September 7, 2007

                Sohrab Saeb and   
       Shahriar Gharibzadeh and   
          Farzad Towhidkhah and   
              Aydin Farajidavar   Modeling the primary auditory cortex
                                  using dynamic synapses: Can synaptic
                                  plasticity explain the temporal tuning?  1--9
                 N. Bairagi and   
                  P. K. Roy and   
               J. Chattopadhyay   Role of infection on the stability of a
                                  predator-prey system with several
                                  response functions --- a comparative
                                  study  . . . . . . . . . . . . . . . . . 10--25
Benjamin Lovegren de Bivort and   
            Chun-Chung Chen and   
          Fabrizio Perretti and   
              Giacomo Negro and   
           Thomas M. Philip and   
                 Yaneer Bar-Yam   Metabolic implications for the mechanism
                                  of mitochondrial endosymbiosis and human
                                  hereditary disorders . . . . . . . . . . 26--36
J. G. Rodríguez-González and   
        M. Santillán and   
               A. C. Fowler and   
              Michael C. Mackey   The segmentation clock in mice:
                                  Interaction between the Wnt and Notch
                                  signalling pathways  . . . . . . . . . . 37--47
             Tanya L. Leise and   
                  Emily E. Moin   A mathematical model of the Drosophila
                                  circadian clock with emphasis on
                                  posttranslational mechanisms . . . . . . 48--63
                   Elan Gin and   
          Edmund J. Crampin and   
             David A. Brown and   
     Trevor J. Shuttleworth and   
              David I. Yule and   
                    James Sneyd   A mathematical model of fluid secretion
                                  from a parotid acinar cell . . . . . . . 64--80
            Anupam Nath Jha and   
        G. K. Ananthasuresh and   
        Saraswathi Vishveshwara   Protein sequence design based on the
                                  topology of the native state structure   81--90
                Jenni Heino and   
              Knarik Tunyan and   
           Daniela Calvetti and   
                Erkki Somersalo   Bayesian flux balance analysis applied
                                  to a skeletal muscle metabolic model . . 91--110
          Stephen T. Abedon and   
               Rachel R. Culler   Bacteriophage evolution given spatial
                                  constraint . . . . . . . . . . . . . . . 111--119
       Hendrik B. Tiedemann and   
           Elida Schneltzer and   
              Stefan Zeiser and   
        Isabel Rubio-Aliaga and   
             Wolfgang Wurst and   
           Johannes Beckers and   
     Gerhard K. H. Przemeck and   
 Martin Hrabé de Angelis   Cell-based simulation of dynamic
                                  expression patterns in the presomitic
                                  mesoderm . . . . . . . . . . . . . . . . 120--129
            William Dampier and   
                  Aydin Tozeren   Signaling perturbations induced by
                                  invading \bionameH. pylori proteins in
                                  the host epithelial cells: a
                                  mathematical modeling approach . . . . . 130--144
                 Boyu Zhang and   
               Zhibin Zhang and   
                Zhenqing Li and   
                         Yi Tao   Stability analysis of a two-species
                                  model with transitions between
                                  population interactions  . . . . . . . . 145--153
               Martin Hoyle and   
             James E. Cresswell   A search theory model of patch-to-patch
                                  forager movement with application to
                                  pollinator-mediated gene flow  . . . . . 154--163
           Christelle Lopes and   
            Thierry Spataro and   
         Christophe Doursat and   
            Laurent Lapchin and   
                   Roger Arditi   An implicit approach to model plant
                                  infestation by insect pests  . . . . . . 164--178
                    Yaji Xu and   
          Linda J. S. Allen and   
               Alan S. Perelson   Stochastic model of an influenza
                                  epidemic with drug resistance  . . . . . 179--193
              Akihiko Mougi and   
                Kinya Nishimura   A resolution of the paradox of
                                  enrichment . . . . . . . . . . . . . . . 194--201
                  Ben Adams and   
                  Michael Boots   The influence of immune cross-reaction
                                  on phase structure in resonant solutions
                                  of a multi-strain seasonal SIR model . . 202--211
               Simona Hapca and   
           John W. Crawford and   
            Keith MacMillan and   
             Mike J. Wilson and   
                  Iain M. Young   Modelling nematode movement using
                                  time-fractional dynamics . . . . . . . . 212--224
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--224 (7 September 2007)  . . . . ??

Journal of Theoretical Biology
Volume 248, Number 2, September 21, 2007

                  Pei Zhang and   
        Gregory J. Sandland and   
                Zhilan Feng and   
                  Dashun Xu and   
            Dennis J. Minchella   Evolutionary implications for
                                  interactions between multiple strains of
                                  host and parasite  . . . . . . . . . . . 225--240
               Thomas Evans and   
            Roger G. Bowers and   
                Martin Mortimer   Modelling the stability of Stx lysogens  241--250
Miklós Péter Kalapos   The energetics of the reductive citric
                                  acid cycle in the pyrite-pulled surface
                                  metabolism in the early stage of
                                  evolution  . . . . . . . . . . . . . . . 251--258
          Antonio Cappuccio and   
          Moran Elishmereni and   
                      Zvia Agur   Optimization of interleukin-21
                                  immunotherapeutic strategies . . . . . . 259--266
                Mayumi Seto and   
                   Tasuku Akagi   Coexistence introducing regulation of
                                  environmental conditions . . . . . . . . 267--274
         Melvin Khee-Shing Leow   A mathematical model of
                                  pituitary-thyroid interaction to provide
                                  an insight into the nature of the
                                  thyrotropin-thyroid hormone relationship 275--287
            Mayuko Nakamaru and   
                Yayoi Beppu and   
                   Kazuki Tsuji   Does disturbance favor dispersal? An
                                  analysis of ant migration using the
                                  colony-based lattice model . . . . . . . 288--300
               Luca Ridolfi and   
            Paolo D'Odorico and   
                 Francesco Laio   Vegetation dynamics induced by
                                  phreatophyte-aquifer interactions  . . . 301--310
          Agnieszka Ruebenbauer   Simulation of the neural response to the
                                  odour stimulus . . . . . . . . . . . . . 311--316
                       C. F. Lo   Stochastic Gompertz model of tumour cell
                                  growth . . . . . . . . . . . . . . . . . 317--321
           Brian I. Crother and   
              Mary E. White and   
              Andrew D. Johnson   Inferring developmental constraint and
                                  constraint release: Primordial germ cell
                                  determination mechanisms as examples . . 322--330
                Maxine Kwan and   
                   Mont Hubbard   Optimal foot shape for a passive dynamic
                                  biped  . . . . . . . . . . . . . . . . . 331--339
                    N. G. Cogan   Incorporating toxin hypothesis into a
                                  mathematical model of persister
                                  formation and dynamics . . . . . . . . . 340--349
          Alexey V. Melkikh and   
           Vladimir D. Seleznev   Models of active transport of
                                  neurotransmitters in synaptic vesicles   350--353
           Lukasz A. Kurgan and   
             Wojciech Stach and   
                    Jishou Ruan   Novel scales based on hydrophobicity
                                  indices for secondary protein structure  354--366
           Motoyuki Hayashi and   
              Noboru Fujita and   
               Atsushi Yamauchi   Theory of grazing optimization in which
                                  herbivory improves photosynthetic
                                  ability  . . . . . . . . . . . . . . . . 367--376
               Ying-Li Chen and   
                  Qian-Zhong Li   Prediction of apoptosis protein
                                  subcellular location using improved
                                  hybrid approach and pseudo-amino acid
                                  composition  . . . . . . . . . . . . . . 377--381
                 Lewi Stone and   
                      Daihai He   Chaotic oscillations and cycles in
                                  multi-trophic ecological systems . . . . 382--390
           Morten Gram Pedersen   Phantom bursting is highly sensitive to
                                  noise and unlikely to account for slow
                                  bursting in $ \beta $-cells:
                                  Considerations in favor of metabolically
                                  driven oscillations  . . . . . . . . . . 391--400
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 225--400 (21 September 2007) . . . ??

Journal of Theoretical Biology
Volume 248, Number 3, October 7, 2007

Pooria Jafari Moghaddam Fard and   
      Mohammad Reza Tajvidi and   
           Shahriar Gharibzadeh   High-pressure hydrocephalus: a novel
                                  analytical modeling approach . . . . . . 401--410
                   T. Antal and   
              K. B. Blagoev and   
              S. A. Trugman and   
                      S. Redner   Aging and immortality in a cell
                                  proliferation model  . . . . . . . . . . 411--417
         Yann Guédon and   
              Yves Caraglio and   
             Patrick Heuret and   
           Emilie Lebarbier and   
         Céline Meredieu   Analyzing growth components in trees . . 418--447
               Jordi Ferrer and   
                Jaume Vidal and   
                Clara Prats and   
              Joaquim Valls and   
         Esperanza Herreros and   
               Daniel Lopez and   
         Antoni Giró and   
               Domingo Gargallo   Individual-based model and simulation of
                                  \bionamePlasmodium falciparum infected
                                  erythrocyte in vitro cultures  . . . . . 448--459
                 I. Hariton and   
                G. deBotton and   
               T. C. Gasser and   
                G. A. Holzapfel   Stress-modulated collagen fiber
                                  remodeling in a human carotid
                                  bifurcation  . . . . . . . . . . . . . . 460--470
       Dirk Koschützki and   
Henning Schwöbbermeyer and   
                 Falk Schreiber   Ranking of network elements based on
                                  functional substructures . . . . . . . . 471--479
                G. E. Yates and   
                       M. Broom   Stochastic models of kleptoparasitism    480--489
           Vishwesha Guttal and   
                 C. Jayaprakash   Self-organization and productivity in
                                  semi-arid ecosystems: Implications of
                                  seasonality in rainfall  . . . . . . . . 490--500
         Andrew Yu. Morozov and   
       Sergei V. Petrovskii and   
              Nikolay P. Nezlin   Towards resolving the paradox of
                                  enrichment: The impact of zooplankton
                                  vertical migrations on plankton systems
                                  stability  . . . . . . . . . . . . . . . 501--511
           Leszek Gasieniec and   
                Cindy Y. Li and   
                  Paul Sant and   
            Prudence W. H. Wong   Randomized probe selection algorithm for
                                  microarray design  . . . . . . . . . . . 512--521
          Rampal S. Etienne and   
               David Alonso and   
                 Alan J. McKane   The zero-sum assumption in neutral
                                  biodiversity theory  . . . . . . . . . . 522--536
                Yueheng Lan and   
             Garegin A. Papoian   Evolution of complex probability
                                  distributions in enzyme cascades . . . . 537--545
                Xi-Bin Zhou and   
                  Chao Chen and   
               Zhan-Chao Li and   
                  Xiao-Yong Zou   Using Chou's amphiphilic pseudo-amino
                                  acid composition and support vector
                                  machine for prediction of enzyme
                                  subfamily classes  . . . . . . . . . . . 546--551
              Akihiko Mougi and   
                Kinya Nishimura   Evolution of life-history traits
                                  collapses competitive coexistence  . . . 552--559
         Attila Tóth and   
              Ethel Queralt and   
              Frank Uhlmann and   
       Béla Novák   Mitotic exit in two dimensions . . . . . 560--573
               Vasili Hauryliuk   Evolution of translational machinery:
                                  Could translation termination come into
                                  being before elongation? . . . . . . . . 574--578
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 401--578 (7 October 2007)  . . . . ??

Journal of Theoretical Biology
Volume 248, Number 4, October 21, 2007

             Yong-Tao Zhang and   
           Arthur D. Lander and   
                       Qing Nie   Computational analysis of BMP gradients
                                  in dorsal-ventral patterning of the
                                  zebrafish embryo . . . . . . . . . . . . 579--589
                  H. Kimura and   
                   H. Okano and   
                   R. J. Tanaka   Stochastic approach to molecular
                                  interactions and computational theory of
                                  metabolic and genetic regulations  . . . 590--607
       M. Gabriela M. Gomes and   
            Paula Rodrigues and   
            Frank M. Hilker and   
Natalia B. Mantilla-Beniers and   
             Marion Muehlen and   
         Ana Cristina Paulo and   
               Graham F. Medley   Implications of partial immunity on the
                                  prospects for tuberculosis control by
                                  post-exposure interventions  . . . . . . 608--617
               Deok-Sun Lee and   
                   Heiko Rieger   Comparative study of the transcriptional
                                  regulatory networks of \bionameE. coli
                                  and yeast: Structural characteristics
                                  leading to marginal dynamic stability    618--626
              Janko Gravner and   
              Damien Pitman and   
               Sergey Gavrilets   Percolation on fitness landscapes:
                                  Effects of correlation, phenotype, and
                                  incompatibilities  . . . . . . . . . . . 627--645
                Enrique Canessa   Modeling of body mass index by Newton's
                                  second law . . . . . . . . . . . . . . . 646--656
       Nikolaos M. Tsoukias and   
             Daniel Goldman and   
            Arjun Vadapalli and   
          Roland N. Pittman and   
            Aleksander S. Popel   A computational model of oxygen delivery
                                  by hemoglobin-based oxygen carriers in
                                  three-dimensional microvascular networks 657--674
                 M. Kaufman and   
            C. Soulé and   
                      R. Thomas   A new necessary condition on interaction
                                  graphs for multistationarity . . . . . . 675--685
        Sharon R. Bullimore and   
                 Jeremy F. Burn   Ability of the planar spring-mass model
                                  to predict mechanical parameters in
                                  running humans . . . . . . . . . . . . . 686--695
           Rajamanickam Murugan   Action at distance along the DNA: a
                                  random jump model on enhancer action . . 696--705
           Angela Angeleska and   
             Natasa Jonoska and   
             Masahico Saito and   
             Laura F. Landweber   RNA-guided DNA assembly  . . . . . . . . 706--720
           Samad Jahandideh and   
Ebrahim Barzegari Asadabadi and   
         Parviz Abdolmaleki and   
            Mina Jahandideh and   
               Somayyeh Hoseini   Protein psychrophilicity: Role of
                                  residual structural properties in
                                  adaptation of proteins to low
                                  temperatures . . . . . . . . . . . . . . 721--726
                    Ning Du and   
                  Jintu Fan and   
                  Huijun Wu and   
                  Shuo Chen and   
                       Yang Liu   An improved model of heat transfer
                                  through penguin feathers and down  . . . 727--735
  Péter Szabó and   
Tamás Czárán and   
       György Szabó   Competing associations in bacterial
                                  warfare with two toxins  . . . . . . . . 736--744
             Donald R. Forsdyke   Calculation of folding energies of
                                  single-stranded nucleic acid sequences:
                                  Conceptual issues  . . . . . . . . . . . 745--753
                      Anonymous   Author Index . . . . . . . . . . . . . . 754--756
                      Anonymous   Subject Index  . . . . . . . . . . . . . 757--763
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 579--764 (21 October 2007) . . . . ??


Journal of Theoretical Biology
Volume 249, Number 1, November 7, 2007

            Tatiana Lomasko and   
               Geoff Clarke and   
             Charles J. Lumsden   One-hit stochastic decline in a
                                  mechanochemical model of
                                  cytoskeleton-induced neuron death I:
                                  Cell-fate arrival times  . . . . . . . . 1--17
            Tatiana Lomasko and   
               Geoff Clarke and   
             Charles J. Lumsden   One-hit stochastic decline in a
                                  mechanochemical model of
                                  cytoskeleton-induced neuron death II:
                                  Transition state metastability . . . . . 18--28
     Alejandro López and   
              Humberto Arce and   
             Michael R. Guevara   Rhythms of high-grade block in an ionic
                                  model of a strand of regionally ischemic
                                  ventricular muscle . . . . . . . . . . . 29--45
            Antonio J. Golubski   Interactive effects of builders and
                                  exploiters on environmental quality and
                                  the outcome of competition between the
                                  two  . . . . . . . . . . . . . . . . . . 46--57
              Nikhil Gandhi and   
            Gonen Ashkenasy and   
            Emmanuel Tannenbaum   Associative learning in biochemical
                                  networks . . . . . . . . . . . . . . . . 58--66
             Piotr H. Pawlowski   Mechanokinetic model of cell membrane:
                                  Theoretical analysis of plasmalemma
                                  homeostasis, growth and division . . . . 67--76
            Patrik Karlsson and   
              Tomas Jonsson and   
                  Annie Jonsson   Food web structure and interaction
                                  strength pave the way for vulnerability
                                  to extinction  . . . . . . . . . . . . . 77--92
            Shinsuke Suzuki and   
                   Eizo Akiyama   Three-person game facilitates indirect
                                  reciprocity under image scoring  . . . . 93--100
            Peter D. Taylor and   
                   Troy Day and   
                     Geoff Wild   From inclusive fitness to fixation
                                  probability in homogeneous structured
                                  populations  . . . . . . . . . . . . . . 101--110
        T. Hölttä and   
                  T. Vesala and   
                    E. Nikinmaa   A model of bubble growth leading to
                                  xylem conduit embolism . . . . . . . . . 111--123
        Filip J. R. Meysman and   
                   Stijn Bruers   A thermodynamic perspective on food
                                  webs: Quantifying entropy production
                                  within detrital-based ecosystems . . . . 124--139
             Steven D. Webb and   
            Matt J. Keeling and   
                     Mike Boots   Host-parasite interactions between the
                                  local and the mean-field: How and when
                                  does spatial population structure
                                  matter?  . . . . . . . . . . . . . . . . 140--152
              Samuel Cotton and   
                 Claus Wedekind   Introduction of Trojan sex chromosomes
                                  to boost population growth . . . . . . . 153--161
         Hervé Seligmann   Cost minimization of ribosomal
                                  frameshifts  . . . . . . . . . . . . . . 162--167
                 Dafeng Hui and   
              Robert B. Jackson   Uncertainty in allometric exponent
                                  estimation: a case study in scaling
                                  metabolic rate with body mass  . . . . . 168--177
                Michael R. King   Do blood capillaries exhibit optimal
                                  bumpiness? . . . . . . . . . . . . . . . 178--180
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--180 (7 November 2007) . . . . . ??

Journal of Theoretical Biology
Volume 249, Number 2, November 21, 2007

  Paulo R. Guimarães and   
             Glauco Machado and   
     Marcus A. M. de Aguiar and   
              Pedro Jordano and   
            Jordi Bascompte and   
  Alu\'ìsio Pinheiro and   
 Sérgio Furtado dos Reis   Build-up mechanisms determining the
                                  topology of mutualistic networks . . . . 181--189
                 A. J. Wood and   
                      J. B. Coe   A fitness based analysis of Daisyworld   190--197
         Omar Tonsi Eldakar and   
           Dene Leo Farrell and   
             David Sloan Wilson   Selfish punishment: Altruism can be
                                  maintained by competition among cheaters 198--205
                 M. Llobera and   
                  T. J. Sluckin   Zigzagging: Theoretical insights on
                                  climbing strategies  . . . . . . . . . . 206--217
           Tristan Kimbrell and   
             Robert D. Holt and   
                   Per Lundberg   The influence of vigilance on intraguild
                                  predation  . . . . . . . . . . . . . . . 218--234
             Samuel Bottani and   
             Basile Grammaticos   Analysis of a minimal model for p53
                                  oscillations . . . . . . . . . . . . . . 235--245
         Andrew Yu. Morozov and   
        Cécile Robin and   
                    Alain Franc   A simple model for the dynamics of a
                                  host-parasite-hyperparasite interaction  246--253
                      Shili Lin   Mixture modeling of progression pathways
                                  of heterogeneous breast tumors . . . . . 254--261
                Eric Durand and   
         Michael G. B. Blum and   
        Olivier François   Prediction of group patterns in social
                                  mammals based on a coalescent model  . . 262--270
            Christian J. Michel   Evolution probabilities and phylogenetic
                                  distance of dinucleotides  . . . . . . . 271--277
               Jan Fuhrmann and   
             Josef Käs and   
                 Angela Stevens   Initiation of cytoskeletal asymmetry for
                                  cell polarization and movement . . . . . 278--288
            Hisashi Ohtsuki and   
              Pedro Bordalo and   
                Martin A. Nowak   The one-third law of evolutionary
                                  dynamics . . . . . . . . . . . . . . . . 289--295
                T. Ishikawa and   
               T. J. Pedley and   
                   T. Yamaguchi   Orientational relaxation time of
                                  bottom-heavy squirmers in a semi-dilute
                                  suspension . . . . . . . . . . . . . . . 296--306
             Enrique Burgos and   
               Horacio Ceva and   
      Roberto P. J. Perazzo and   
             Mariano Devoto and   
                Diego Medan and   
 Mart\'ìn Zimmermann and   
      Ana Mar\'ìa Delbue   Why nestedness in mutualistic networks?  307--313
          Jacques Demongeot and   
          Andrés Moreira   A possible circular RNA at the origin of
                                  life . . . . . . . . . . . . . . . . . . 314--324
             Donald R. Forsdyke   Molecular sex: The importance of base
                                  composition rather than homology when
                                  nucleic acids hybridize  . . . . . . . . 325--330
                    Tsvi Tlusty   A model for the emergence of the genetic
                                  code as a transition in a noisy
                                  information channel  . . . . . . . . . . 331--342
                R. Miftahof and   
                N. R. Akhmadeev   Neurochemical bases of visceral
                                  nociception: Mathematical model  . . . . 343--360
          Kevin J. Kesseler and   
        William K. Kaufmann and   
           Joyce T. Reardon and   
          Timothy C. Elston and   
                    Aziz Sancar   A mathematical model for human
                                  nucleotide excision repair: Damage
                                  recognition by random order assembly and
                                  kinetic proofreading . . . . . . . . . . 361--375
           Armin O. Schmitt and   
       Johannes Schuchhardt and   
                Arne Ludwig and   
            Gudrun A. Brockmann   Protein evolution within and between
                                  species  . . . . . . . . . . . . . . . . 376--383
                Anna Q. Cai and   
           Kerry A. Landman and   
            Barry D. Hughes and   
                Colleen M. Witt   T cell development in the thymus: From
                                  periodic seeding to constant output  . . 384--394
       Hugo A. van den Berg and   
           Linda Wooldridge and   
               Bruno Laugel and   
               Andrew K. Sewell   Coreceptor CD8-driven modulation of T
                                  cell antigen receptor specificity  . . . 395--408
            Mark Bebbington and   
              Chin-Diew Lai and   
               Ricardas Zitikis   Addendum to ``Modeling human mortality
                                  using mixtures of bathtub shaped failure
                                  distributions'': Journal of Theoretical
                                  Biology \bf 245 (2007) 528--538  . . . . 409--410
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 181--410 (21 November 2007)  . . . ??

Journal of Theoretical Biology
Volume 249, Number 3, December 7, 2007

            David T. Kysela and   
                 Paul E. Turner   Optimal bacteriophage mutation rates for
                                  phage therapy  . . . . . . . . . . . . . 411--421
                  Emma Hart and   
             Hugues Bersini and   
            Francisco C. Santos   How affinity influences tolerance in an
                                  idiotypic network  . . . . . . . . . . . 422--436
            Richard J. Hall and   
                  Alan Hastings   Minimizing invader impacts: Striking the
                                  right balance between removal and
                                  restoration  . . . . . . . . . . . . . . 437--444
              Josef Jäckle   The causal theory of the resting
                                  potential of cells . . . . . . . . . . . 445--463
                Gottfried Sachs   Tail effects on yaw stability in birds   464--472
                Hsin-Hue Wu and   
               How-Jing Lee and   
             Shwu-Bin Horng and   
                    Ludek Berec   Modeling population dynamics of two
                                  cockroach species: Effects of the
                                  circadian clock, interspecific
                                  competition and pest control . . . . . . 473--486
        Erika M. C. D'Agata and   
               Pierre Magal and   
             Damien Olivier and   
                Shigui Ruan and   
                  Glenn F. Webb   Modeling antibiotic resistance in
                                  hospitals: The impact of minimizing
                                  treatment duration . . . . . . . . . . . 487--499
              M. N. Jabbour and   
                  G. T. Matioli   Homotopic dynamics of telomeric loops in
                                  mammalian chromatids . . . . . . . . . . 500--502
                 D. Holcman and   
                V. Kasatkin and   
                  A. Prochiantz   Modeling homeoprotein intercellular
                                  transfer unveils a parsimonious
                                  mechanism for gradient and boundary
                                  formation in early brain development . . 503--517
            Rainer K. Sachs and   
               Igor Shuryak and   
              David Brenner and   
                Hatim Fakir and   
                Lynn Hlatky and   
               Philip Hahnfeldt   Second cancers after fractionated
                                  radiotherapy: Stochastic population
                                  dynamics effects . . . . . . . . . . . . 518--531
               Zhiping Wang and   
                   Xianning Liu   A chronic viral infection model with
                                  immune impairment  . . . . . . . . . . . 532--542
                 Greg Lemon and   
            Sarah L. Waters and   
     Felicity R. A. J. Rose and   
                   John R. King   Mathematical modelling of human
                                  mesenchymal stem cell proliferation and
                                  differentiation inside artificial porous
                                  scaffolds  . . . . . . . . . . . . . . . 543--553
         Ferdi L. Hellweger and   
                 Ehsan Kianirad   Individual-based modeling of
                                  phytoplankton: Evaluating approaches for
                                  applying the cell quota model  . . . . . 554--565
                       Ping Xie   Model for RuvAB-mediated branch
                                  migration of Holliday junctions  . . . . 566--573
             Stephen Cooper and   
                  Kerby Shedden   Microarrays and the relationship of mRNA
                                  variation to protein variation during
                                  the cell cycle . . . . . . . . . . . . . 574--581
          Stephen T. Abedon and   
               Rachel R. Culler   Optimizing bacteriophage plaque
                                  fecundity  . . . . . . . . . . . . . . . 582--592
          Mohammad Bannayan and   
         Kazuhiko Kobayashi and   
             Hassan Marashi and   
              Gerrit Hoogenboom   Gene-based modelling for rice: An
                                  opportunity to enhance the simulation of
                                  rice growth and development? . . . . . . 593--605
          Christina Pawlowitsch   Finite populations choose an optimal
                                  language . . . . . . . . . . . . . . . . 606--616
              Arne Traulsen and   
                  Yoh Iwasa and   
                Martin A. Nowak   The fastest evolutionary trajectory  . . 617--623
          Justin P. Blumenstiel   Sperm competition can drive a
                                  male-biased mutation rate  . . . . . . . 624--632
       Roberto Antonio Clemente   On West, Brown and Enquist's metabolism
                                  allometry model  . . . . . . . . . . . . 633--637
         H. Martin Schaefer and   
                 Kevin S. Gould   Modelling the evolution of leaf
                                  colouration with binary assumptions is
                                  barking up the wrong tree  . . . . . . . 638--639
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 411--640 (7 December 2007) . . . . ??

Journal of Theoretical Biology
Volume 249, Number 4, December 21, 2007

            Lloyd Demetrius and   
   Volker Matthias Gundlach and   
                   Martin Ziehe   Darwinian fitness and the intensity of
                                  natural selection: Studies in
                                  sensitivity analysis . . . . . . . . . . 641--653
         Daniel D. Wiegmann and   
               Lisa M. Angeloni   Mate choice and uncertainty in the
                                  decision process . . . . . . . . . . . . 654--666
        Matthijs van Veelen and   
              Astrid Hopfensitz   In love and war: Altruism, norm
                                  formation, and two different types of
                                  group selection  . . . . . . . . . . . . 667--680
                Xiao-Qin Qi and   
                    Jie Wen and   
                    Zhao-Hui Qi   New 3D graphical representation of DNA
                                  sequence based on dual nucleotides . . . 681--690
            Mark G. Poolman and   
             Cristiana Sebu and   
         Michael K. Pidcock and   
                  David A. Fell   Modular decomposition of metabolic
                                  systems via null-space analysis  . . . . 691--705
                 Eben Kenah and   
                James M. Robins   Network-based analysis of stochastic SIR
                                  epidemic models with random and
                                  proportionate mixing . . . . . . . . . . 706--722
      Anastasios Matzavinos and   
                 Hans G. Othmer   A stochastic analysis of actin
                                  polymerization in the presence of
                                  twinfilin and gelsolin . . . . . . . . . 723--736
                Arho Virkki and   
                  Olli Polo and   
            Mats Gyllenberg and   
               Tero Aittokallio   Can carotid body perfusion act as a
                                  respiratory controller?  . . . . . . . . 737--748
              Kai Willadsen and   
                    Janet Wiles   Robustness and state-space structure of
                                  Boolean gene regulatory models . . . . . 749--765
            Natalia L. Komarova   Viral reproductive strategies: How can
                                  lytic viruses be evolutionarily
                                  competitive? . . . . . . . . . . . . . . 766--784
           Samad Jahandideh and   
      Amir Sabet Sarvestani and   
         Parviz Abdolmaleki and   
            Mina Jahandideh and   
                Mahdyar Barfeie   $ \gamma $-Turn types prediction in
                                  proteins using the support vector
                                  machines . . . . . . . . . . . . . . . . 785--790
                  Steinar Engen   Heterogeneous communities with lognormal
                                  species abundance distribution:
                                  Species-area curves and sustainability   791--803
            Jessica Purcell and   
                  Anders Brodin   Factors influencing route choice by
                                  avian migrants: a dynamic programming
                                  model of Pacific brant migration . . . . 804--816
   Björn F. C. Kafsack and   
         Vern B. Carruthers and   
             Fernando J. Pineda   Kinetic modeling of Toxoplasma gondii
                                  invasion . . . . . . . . . . . . . . . . 817--825
        R. Randal Bollinger and   
           Andrew S. Barbas and   
              Errol L. Bush and   
                 Shu S. Lin and   
                 William Parker   Biofilms in the large bowel suggest an
                                  apparent function of the human vermiform
                                  appendix . . . . . . . . . . . . . . . . 826--831
                      Anonymous   Author Index . . . . . . . . . . . . . . 832--834
                      Anonymous   Subject Index  . . . . . . . . . . . . . 835--843
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 641--844 (21 December 2007)  . . . ??


Journal of Theoretical Biology
Volume 250, Number 1, January 7, 2008

           B. Addison-Smith and   
          D. L. S. McElwain and   
                    P. K. Maini   A simple mechanistic model of sprout
                                  spacing in tumour-associated
                                  angiogenesis . . . . . . . . . . . . . . 1--15
             P. P. Delsanto and   
               C. A. Condat and   
                   N. Pugno and   
              A. S. Gliozzi and   
                      M. Griffa   A multilevel approach to cancer growth
                                  modeling . . . . . . . . . . . . . . . . 16--24
              Katie Bentley and   
            Holger Gerhardt and   
                  Paul A. Bates   Agent-based simulation of notch-mediated
                                  tip cell selection in angiogenic sprout
                                  initialisation . . . . . . . . . . . . . 25--36
               Andreas Bohn and   
     Jordi García-Ojalvo   Synchronization of coupled biological
                                  oscillators under spatially
                                  heterogeneous environmental forcing  . . 37--47
          Gerhard Schlosser and   
          Günter P. Wagner   A simple model of co-evolutionary
                                  dynamics caused by epistatic selection   48--65
               Mia T. Borup and   
                Ala Trusina and   
           Anna M. C. Andersson   Aging mechanism as the ``down side'' of
                                  adaptation: a network approach . . . . . 66--74
                  Dong Kong and   
                  Baohua Ji and   
                    Lanhong Dai   Nonlinear mechanical modeling of cell
                                  adhesion . . . . . . . . . . . . . . . . 75--84
              Michael M. Walker   A model for encoding of magnetic field
                                  intensity by magnetite-based
                                  magnetoreceptor cells  . . . . . . . . . 85--91
            Y. Lecarpentier and   
                X. Krokidis and   
                  P. Martin and   
                  T. Pineau and   
        J.-L. Hébert and   
                J. Quillard and   
       M. Cortes-Morichetti and   
                    C. Coirault   Increased entropy production in
                                  diaphragm muscle of PPAR $ \alpha $
                                  knockout mice  . . . . . . . . . . . . . 92--102
               Shrabani Sen and   
           Syed Shahed Riaz and   
                Deb Shankar Ray   Temperature dependence and temperature
                                  compensation of kinetics of chemical
                                  oscillations; Belousov--Zhabotinskii
                                  reaction, glycolysis and circadian
                                  rhythms  . . . . . . . . . . . . . . . . 103--112
          Frederic Guichard and   
                 Robin Steenweg   Intrinsic and extrinsic causes of
                                  spatial variability across scales in a
                                  metacommunity  . . . . . . . . . . . . . 113--124
       Andreas A. Linninger and   
Mahadevabharath R. Somayaji and   
             Megan Mekarski and   
                    Libin Zhang   Prediction of convection-enhanced drug
                                  delivery to the human brain  . . . . . . 125--138
                 Xiufen Zou and   
                   Tao Peng and   
                      Zishu Pan   Modeling specificity in the yeast MAPK
                                  signaling networks . . . . . . . . . . . 139--155
     Emmanuele De Vendittis and   
      Immacolata Castellano and   
            Roberta Cotugno and   
       Maria Rosaria Ruocco and   
              Gennaro Raimo and   
           Mariorosario Masullo   Adaptation of model proteins from cold
                                  to hot environments involves continuous
                                  and small adjustments of average
                                  parameters related to amino acid
                                  composition  . . . . . . . . . . . . . . 156--171
              M. R. Bennett and   
                 L. Farnell and   
                   W. G. Gibson   Origins of blood volume change due to
                                  glutamatergic synaptic activity at
                                  astrocytes abutting on arteriolar smooth
                                  muscle cells . . . . . . . . . . . . . . 172--185
           Tong-Liang Zhang and   
            Yong-Sheng Ding and   
                  Kuo-Chen Chou   Prediction protein structural classes
                                  with pseudo-amino acid composition:
                                  Approximate entropy and hydrophobicity
                                  pattern  . . . . . . . . . . . . . . . . 186--193
          J. A. C. Humphrey and   
                    E. S. Dykes   Thermal energy conduction in a honey bee
                                  comb due to cell-heating bees  . . . . . 194--208
       Mohsen Sabouri-Ghomi and   
           Andrea Ciliberto and   
                 Sandip Kar and   
                 Bela Novak and   
                  John J. Tyson   Antagonism and bistability in protein
                                  interaction networks . . . . . . . . . . 209--218
         Attila Tóth and   
              Ethel Queralt and   
              Frank Uhlmann and   
       Béla Novák   Erratum to ``Mitotic exit in two
                                  dimensions'': [J. Theor. Biol. \bf 248
                                  (2007) 560--573] . . . . . . . . . . . . 219--219
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--220 (7 January 2008)  . . . . . ??

Journal of Theoretical Biology
Volume 250, Number 2, January 21, 2008

Sávio Torres de Farias and   
 Romeu Cardoso Guimarães   Aminoacyl-tRNA synthetase classes and
                                  groups in prokaryotes  . . . . . . . . . 221--229
          Tomohiro Matsuoka and   
                 Sohei Gomi and   
                  Ryuzo Shingai   Simulation of \bionameC. elegans
                                  thermotactic behavior in a linear
                                  thermal gradient using a simple
                                  phenomenological motility model  . . . . 230--243
             Chih-Horng Kuo and   
       Vanessa Corby-Harris and   
         Daniel E. L. Promislow   The unavoidable costs and unexpected
                                  benefits of parasitism: Population and
                                  metapopulation models of
                                  parasite-mediated competition  . . . . . 244--256
                  M. Welter and   
                  K. Bartha and   
                      H. Rieger   Emergent vascular network
                                  inhomogeneities and resulting blood flow
                                  patterns in a growing tumor  . . . . . . 257--280
               Anne Deredec and   
                Ludek Berec and   
            David S. Boukal and   
               Franck Courchamp   Are non-sexual models appropriate for
                                  predicting the impact of virus-vectored
                                  immunocontraception? . . . . . . . . . . 281--290
             Sourav Rakshit and   
            G. K. Ananthasuresh   An amino acid map of inter-residue
                                  contact energies using metric
                                  multi-dimensional scaling  . . . . . . . 291--297
               Nicole Radde and   
               Jutta Gebert and   
              Ulrich Faigle and   
            Rainer Schrader and   
                  Karin Schnetz   Modeling feedback loops in the
                                  H-NS-mediated regulation of the
                                  \bionameEscherichia coli bgl operon  . . 298--306
              Atsushi Mochizuki   Structure of regulatory networks and
                                  diversity of gene expression patterns    307--321
             Fabien Crauste and   
      Laurent Pujo-Menjouet and   
Stéphane Génieys and   
      Clément Molina and   
             Olivier Gandrillon   Adding self-renewal in committed
                                  erythroid progenitors improves the
                                  biological relevance of a mathematical
                                  model of erythropoiesis  . . . . . . . . 322--338
        Sharon R. Bullimore and   
             J. Maxwell Donelan   Criteria for dynamic similarity in
                                  bouncing gaits . . . . . . . . . . . . . 339--348
                      Yi Lu and   
            Stephen J. Freeland   A quantitative investigation of the
                                  chemical space surrounding amino acid
                                  alphabet formation . . . . . . . . . . . 349--361
               Guolian Kang and   
                 Weihua Yue and   
               Jifeng Zhang and   
                 Yuehua Cui and   
                  Yijun Zuo and   
                      Dai Zhang   An entropy-based approach for testing
                                  genetic epistasis underlying complex
                                  diseases . . . . . . . . . . . . . . . . 362--374
               Tailei Zhang and   
                   Zhidong Teng   An SIRVS epidemic model with pulse
                                  vaccination strategy . . . . . . . . . . 375--381
                   Jun Wang and   
                   Xiaoqi Zheng   Comparison of protein secondary
                                  structures based on backbone dihedral
                                  angles . . . . . . . . . . . . . . . . . 382--387
                  Frans L. Roes   A note on ants and aphids  . . . . . . . 388--388
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 221--388 (21 January 2008) . . . . ??

Journal of Theoretical Biology
Volume 250, Number 3, February 7, 2008

           Daniel V. Guebel and   
        Néstor V. Torres   A computer model of oxygen dynamics in
                                  human colon mucosa: Implications in
                                  normal physiology and early tumor
                                  development  . . . . . . . . . . . . . . 389--409
                 Adi Livnat and   
             Nicholas Pippenger   Systematic mistakes are likely in
                                  bounded optimal decision-making systems  410--423
                E. Casellas and   
                J. Gautrais and   
                R. Fournier and   
                  S. Blanco and   
                   M. Combe and   
       V. Fourcassié and   
               G. Theraulaz and   
                        C. Jost   From individual to collective
                                  displacements in heterogeneous
                                  environments . . . . . . . . . . . . . . 424--434
           Graeme D. Ruxton and   
                  Guy Beauchamp   The application of genetic algorithms in
                                  behavioural ecology, illustrated with a
                                  model of anti-predator vigilance . . . . 435--448
             A. E. D'Orazio and   
                    T. A. Waite   Incomplete division of labor:
                                  Error-prone multitaskers coexist with
                                  specialists  . . . . . . . . . . . . . . 449--460
                     Yun He and   
                  Sanbo Qin and   
                  Xian-Ming Pan   A novel procedure for identification of
                                  the folding/unfolding patterns of
                                  dimeric proteins . . . . . . . . . . . . 461--467
                M. Andrecut and   
                   D. Cloud and   
                 S. A. Kauffman   Monte Carlo simulation of a simple gene
                                  network yields new evolutionary insights 468--474
 Raúl Jiménez and   
                Haydee Lugo and   
      José A. Cuesta and   
           Angel Sánchez   Emergence and resilience of cooperation
                                  in the spatial prisoner's dilemma via a
                                  reward mechanism . . . . . . . . . . . . 475--483
                Emma Y. Jin and   
                   Jing Qin and   
            Christian M. Reidys   Neutral networks of sequence to shape
                                  maps . . . . . . . . . . . . . . . . . . 484--497
               Andrew Hoyle and   
            Roger G. Bowers and   
               Andrew White and   
                  Michael Boots   The influence of trade-off shape on
                                  evolutionary behaviour in classical
                                  ecological scenarios . . . . . . . . . . 498--511
          George Czerlinski and   
                  Tjalling Ypma   Mechanisms of telomerase-dimer catalysis 512--523
              Lutz Fromhage and   
           John M. McNamara and   
            Alasdair I. Houston   A model for the evolutionary maintenance
                                  of monogyny in spiders . . . . . . . . . 524--531
                Jozef Janda and   
                 Gernot Geginat   A deterministic model for the processing
                                  and presentation of bacteria-derived
                                  antigenic peptides . . . . . . . . . . . 532--546
                Emma Y. Jin and   
            Christian M. Reidys   Central and local limit theorems for RNA
                                  structures . . . . . . . . . . . . . . . 547--559
     Josep Sardanyés and   
          Santiago F. Elena and   
          Ricard V. Solé   Simple quasispecies models for the
                                  survival-of-the-flattest effect: The
                                  role of space  . . . . . . . . . . . . . 560--568
              Thomas Caraco and   
                  Ing-Nang Wang   Free-living pathogens: Life-history
                                  constraints and strain competition . . . 569--579
            Edelmira Valero and   
Manuela García-Moreno and   
      Jesualdo Masiá and   
María-José García-Meseguer and   
      Ramón Varón   Corrigendum to ``Kinetic behaviour of
                                  proenzymes activation in the presence of
                                  different inhibitors for both activating
                                  and activated enzymes'': [J. Theor.
                                  Biol. \bf 245 (2007) 175--192] . . . . . 580--580
                      Anonymous   Editorial Board  . . . . . . . . . . . . CO2
                      Anonymous   Pages 389--580 (7 February 2008) . . . . ??

Journal of Theoretical Biology
Volume 250, Number 4, February 21, 2008

   D.-E. Bettendorff-Bakman and   
                  P. Schmid and   
         P. P. Lunkenheimer and   
                    P. Niederer   Diastolic ventricular aspiration: a
                                  mechanism supporting the rapid filling
                                  phase of the human ventricles  . . . . . 581--592
              David Fouchet and   
Jean-Sébastien Guitton and   
Stéphane Marchandeau and   
              Dominique Pontier   Impact of myxomatosis in relation to
                                  local persistence in wild rabbit
                                  populations: The role of waning immunity
                                  and the reproductive period  . . . . . . 593--605
                      K. Qu and   
                    P. Ortoleva   Understanding stem cell differentiation
                                  through self-organization theory . . . . 606--620
            Noriaki Okazaki and   
                Ryoji Asano and   
          Takashi Kinoshita and   
                 Hiroshi Chuman   Simple computational models of type
                                  I/type II cells in Fas signaling-induced
                                  apoptosis  . . . . . . . . . . . . . . . 621--633
             Philipp Langer and   
            Martin A. Nowak and   
               Christoph Hauert   Spatial invasion of cooperation  . . . . 634--641
                Bert J. Lao and   
                Daniel T. Kamei   Investigation of cellular movement in
                                  the prostate epithelium using an
                                  agent-based model  . . . . . . . . . . . 642--654
           Remila L. Martis and   
         Sameer Kumar Singh and   
         M. Michael Gromiha and   
                    C. Santhosh   Role of cation-$ \pi $ interactions in
                                  single chain `all-alpha' proteins  . . . 655--662
             P. A. Robinson and   
                      H. Wu and   
                      J. W. Kim   Neural rate equations for bursting
                                  dynamics derived from conductance-based
                                  equations  . . . . . . . . . . . . . . . 663--672
             Stephen Tennenbaum   Simple criteria for finding (nearly)
                                  optimal vaccination strategies . . . . . 673--683
                 A. Gerisch and   
              M. A. J. Chaplain   Mathematical modelling of cancer cell
                                  invasion of tissue: Local and non-local
                                  models and the effect of adhesion  . . . 684--704
                  P. Gerlee and   
              A. R. A. Anderson   A hybrid cellular automaton model of
                                  clonal evolution in cancer: The
                                  emergence of the glycolytic phenotype    705--722
           Jorge M. Pacheco and   
              Arne Traulsen and   
            Hisashi Ohtsuki and   
                Martin A. Nowak   Repeated games and direct reciprocity
                                  under active linking . . . . . . . . . . 723--731
               Thomas Riggs and   
             Adrienne Walts and   
              Nicolas Perry and   
               Laura Bickle and   
          Jennifer N. Lynch and   
                  Amy Myers and   
               Joanne Flynn and   
      Jennifer J. Linderman and   
             Mark J. Miller and   
            Denise E. Kirschner   A comparison of random vs.
                                  chemotaxis-driven contacts of T cells
                                  with dendritic cells during repertoire
                                  scanning . . . . . . . . . . . . . . . . 732--751
                    Kevin Denny   Big and tall parents do not have more
                                  sons . . . . . . . . . . . . . . . . . . 752--753
                      Anonymous   Author Index . . . . . . . . . . . . . . 754--756
                      Anonymous   Subject Index  . . . . . . . . . . . . . 757--761
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 581--762 (21 February 2008)  . . . ??


Journal of Theoretical Biology
Volume 251, Number 1, March 7, 2008

               C. M. Jonker and   
                J. L. Snoep and   
                   J. Treur and   
           H. V. Westerhoff and   
            W. C. A. Wijngaards   BDI-modelling of complex intracellular
                                  dynamics . . . . . . . . . . . . . . . . 1--23
                Leah R. Johnson   Microcolony and biofilm formation as a
                                  survival strategy for bacteria . . . . . 24--34
                 Mario Biondini   Allometric scaling laws for water uptake
                                  by plant roots . . . . . . . . . . . . . 35--59
            Sahraoui Chaieb and   
Sárka Málková and   
                   Jyotsana Lal   Why the wrinkling transition in
                                  partially polymerized membranes is not
                                  universal? Fractal-multifractal
                                  hierarchy  . . . . . . . . . . . . . . . 60--67
Jérôme Gastaldo and   
                Muriel Viau and   
            Michael Bouchot and   
     Aurélie Joubert and   
         Anne-Marie Charvet and   
                  Nicolas Foray   Induction and repair rate of DNA damage:
                                  a unified model for describing effects
                                  of external and internal irradiation and
                                  contamination with heavy metals  . . . . 68--81
        Mateusz Pluci\'nski and   
         Szymon Pluci\'nski and   
Ignacio Rodríguez-Iturbe   Consequences of the fractal architecture
                                  of trees on their structural measures    82--92
       Andrey V. Chernyshev and   
           Peter A. Tarasov and   
     Konstantin A. Semianov and   
     Vyacheslav M. Nekrasov and   
         Alfons G. Hoekstra and   
              Valeri P. Maltsev   Erythrocyte lysis in isotonic solution
                                  of ammonium chloride: Theoretical
                                  modeling and experimental verification   93--107
            Christian Guill and   
                Barbara Drossel   Emergence of complexity in evolving
                                  niche-model food webs  . . . . . . . . . 108--120
                 Ira Aviram and   
            Avinoam Rabinovitch   Dynamical types of bacteria and
                                  bacteriophages interaction: Shielding by
                                  debris . . . . . . . . . . . . . . . . . 121--136
              Liesbet Geris and   
                Alf Gerisch and   
          Jos Vander Sloten and   
        Rüdiger Weiner and   
            Hans Van Oosterwyck   Angiogenesis in bone fracture healing: a
                                  bioregulatory model  . . . . . . . . . . 137--158
                  Liwei Liu and   
                  Tianming Wang   Comparison of TOPS strings based on LZ
                                  complexity . . . . . . . . . . . . . . . 159--166
          Christina Kuttler and   
              Burkhard A. Hense   Interplay of two quorum sensing
                                  regulation systems of Vibrio fischeri    167--180
                   Naoki Masuda   Oscillatory dynamics in evolutionary
                                  games are suppressed by heterogeneous
                                  adaptation rates of players  . . . . . . 181--189
          Matthew S. Grober and   
              Edmund W. Rodgers   The evolution of hermaphroditism . . . . 190--192
                Lena Edlund and   
                    Evelyn Korn   Reply to ``The evolution of
                                  hermaphroditism'' by Matthew S. Grober
                                  and Edmund W. Rodgers  . . . . . . . . . 193--193
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--194 (7 March 2008)  . . . . . . ??

Journal of Theoretical Biology
Volume 251, Number 2, March 21, 2008

               Uwe Pliquett and   
                Ch. Gusbeth and   
             Richard Nuccitelli   A propagating heat wave model of skin
                                  electroporation  . . . . . . . . . . . . 195--201
               M. A. Dahlem and   
            F. M. Schneider and   
                 E. Schöll   Efficient control of transient wave
                                  forms to prevent spreading
                                  depolarizations  . . . . . . . . . . . . 202--209
            Stephan Peischl and   
           Reinhard Bürger   Evolution of dominance under
                                  frequency-dependent intraspecific
                                  competition  . . . . . . . . . . . . . . 210--226
                Robert J. Smith   Explicitly accounting for antiretroviral
                                  drug uptake in theoretical HIV models
                                  predicts long-term failure of
                                  protease-only therapy  . . . . . . . . . 227--237
                       Ping Yan   Separate roles of the latent and
                                  infectious periods in shaping the
                                  relation between the basic reproduction
                                  number and the intrinsic growth rate of
                                  infectious disease outbreaks . . . . . . 238--252
               J. A. Cuesta and   
          R. Jiménez and   
                    H. Lugo and   
              A. Sánchez   The shared reward dilemma  . . . . . . . 253--263
                Hongya Zhao and   
        Alan Wee-Chung Liew and   
                 Xudong Xie and   
                       Hong Yan   A new geometric biclustering algorithm
                                  based on the Hough transform for
                                  analysis of large-scale microarray data  264--274
          Micha\l Brylinski and   
           Leszek Konieczny and   
         Andrzej Kononowicz and   
                 Irena Roterman   Conservative secondary structure motifs
                                  already present in early-stage folding
                                  (in silico) as found in serpines family  275--285
        Beáta Faller and   
                Fabio Pardi and   
                     Mike Steel   Distribution of phylogenetic diversity
                                  under random extinction  . . . . . . . . 286--296
              Raluca Apostu and   
              Michael C. Mackey   Understanding cyclical thrombocytopenia:
                                  a mathematical modeling approach . . . . 297--316
            Tewfik Mahdjoub and   
    Frédéric Menu   Prolonged diapause: a trait increasing
                                  invasion speed?  . . . . . . . . . . . . 317--330
         Bengt Nölting and   
               Neema Salimi and   
                    Ulrich Guth   Protein folding forces . . . . . . . . . 331--347
               Hedia Fgaier and   
               Balazs Feher and   
          Robin C. McKellar and   
               Hermann J. Eberl   Predictive modeling of siderphore
                                  production by Pseudomonas fluorescens
                                  under iron limitation  . . . . . . . . . 348--362
            Reiko J. Tanaka and   
                Hidenori Kimura   Mathematical classification of
                                  regulatory logics for compound
                                  environmental changes  . . . . . . . . . 363--379
              Leila Pirhaji and   
               Mehdi Kargar and   
              Armita Sheari and   
         Hadi Poormohammadi and   
              Mehdi Sadeghi and   
              Hamid Pezeshk and   
               Changiz Eslahchi   The performances of the chi-square test
                                  and complexity measures for signal
                                  recognition in biological sequences  . . 380--387
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 195--388 (21 March 2008) . . . . . ??

Journal of Theoretical Biology
Volume 251, Number 3, April 7, 2008

          Roderick C. Dewar and   
           Annabel Porté   Statistical mechanics unifies different
                                  ecological patterns  . . . . . . . . . . 389--403
         J. Paul Cunningham and   
                 Stuart A. West   How host plant variability influences
                                  the advantages to learning: a
                                  theoretical model for oviposition
                                  behaviour in Lepidoptera . . . . . . . . 404--410
               Enrico Grazi and   
                   Sara Pozzati   Protein osmotic pressure modulates actin
                                  filament length distribution . . . . . . 411--420
             Alan C. Newell and   
         Patrick D. Shipman and   
                    Zhiying Sun   Phyllotaxis: Cooperation and competition
                                  between mechanical and biochemical
                                  processes  . . . . . . . . . . . . . . . 421--439
      Bhalchandra D. Thatte and   
                     Mike Steel   Reconstructing pedigrees: a stochastic
                                  perspective  . . . . . . . . . . . . . . 440--449
           Vittoria Colizza and   
          Alessandro Vespignani   Epidemic modeling in metapopulation
                                  systems with heterogeneous coupling
                                  pattern: Theory and simulations  . . . . 450--467
                      J. Li and   
   C. E. Petit-Jetté and   
               D. Gohore Bi and   
               F. Fenneteau and   
      J. R. E. del Castillo and   
                       F. Nekka   Assessing pharmacokinetic variability
                                  directly induced by drug intake
                                  behaviour through development of a
                                  feeding behaviour-pharmacokinetic model  468--479
              Alona Ben-Tal and   
               Jeffrey C. Smith   A model for control of breathing in
                                  mammals: Coupling neural dynamics to
                                  peripheral gas exchange and transport    480--497
J. M. Garc\'ìa-Manso and   
J. M. Mart\'ìn-González and   
  M. E. Da Silva-Grigoletto and   
                D. Vaamonde and   
                  P. Benito and   
             J. Calderón   Male powerlifting performance described
                                  from the viewpoint of complex systems    498--508
   Aurélien Gautreau and   
               Alain Barrat and   
         Marc Barthélemy   Global disease spread: Statistics and
                                  estimation of arrival times  . . . . . . 509--522
                Jaeyeon Kim and   
           Gerald M. Saidel and   
               Satish C. Kalhan   A computational model of adipose tissue
                                  metabolism: Evidence for intracellular
                                  compartmentation and differential
                                  activation of lipases  . . . . . . . . . 523--540
             Utkala Mohanty and   
              Narendra M. Dixit   Mechanism-based model of the
                                  pharmacokinetics of enfuvirtide, an HIV
                                  fusion inhibitor . . . . . . . . . . . . 541--551
          Ivan V. Surovtsev and   
          Jeffrey J. Morgan and   
                Paul A. Lindahl   Corrigendum to ``Whole-cell modeling
                                  framework in which biochemical dynamics
                                  impact aspects of cellular geometry''
                                  [J. Theor. Biol. \bf 244 (2007)
                                  154--166]  . . . . . . . . . . . . . . . 552--552
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 389--552 (7 April 2008)  . . . . . ??

Journal of Theoretical Biology
Volume 251, Number 4, April 21, 2008

         Maxim Lavrentovich and   
                  Sheryl Hemkin   A mathematical model of spontaneous
                                  calcium(II) oscillations in astrocytes   553--560
 Christopher J. Brinkerhoff and   
                Ji Sun Choi and   
          Jennifer J. Linderman   Diffusion-limited reactions in G-protein
                                  activation: Unexpected consequences of
                                  antagonist and agonist competition . . . 561--569
       Graham R. S. Ritchie and   
                Simon Kirby and   
             David J. C. Hawkey   Song learning as an indicator mechanism:
                                  Modelling the developmental stress
                                  hypothesis . . . . . . . . . . . . . . . 570--583
                Emina Sudar and   
             Jelena Velebit and   
               Zoran Gluvic and   
              Zorica Zakula and   
              Emilija Lazic and   
  Ljiljana Vuksanovic-Topic and   
         Biljana Putnikovic and   
        Aleksandar Neskovic and   
               Esma R. Isenovic   Hypothetical mechanism of sodium pump
                                  regulation by estradiol under primary
                                  hypertension . . . . . . . . . . . . . . 584--592
             Andrew Morozov and   
                    Bai-Lian Li   Abundance patterns in multi-species
                                  communities exposed to habitat
                                  destruction  . . . . . . . . . . . . . . 593--605
           David W. Redding and   
             Klaas Hartmann and   
                 Aki Mimoto and   
                Drago Bokal and   
                 Matt DeVos and   
          Arne Ò. Mooers   Evolutionarily distinctive species often
                                  capture more phylogenetic diversity than
                                  expected . . . . . . . . . . . . . . . . 606--615
              Elsje Pienaar and   
             Hendrik J. Viljoen   The tri-frame model  . . . . . . . . . . 616--627
             Matthew Piazza and   
            Xiao-Jiang Feng and   
       Joshua D. Rabinowitz and   
                Herschel Rabitz   Diverse metabolic model parameters
                                  generate similar methionine cycle
                                  dynamics . . . . . . . . . . . . . . . . 628--639
                  John L. Locke   Cost and complexity: Selection for
                                  speech and language  . . . . . . . . . . 640--652
         J. McDonald-Gibson and   
                 J. G. Dyke and   
             E. A. Di Paolo and   
                   I. R. Harvey   Environmental regulation can arise under
                                  minimal assumptions  . . . . . . . . . . 653--666
              John J. Welch and   
                   David Waxman   Calculating independent contrasts for
                                  the comparative study of substitution
                                  rates  . . . . . . . . . . . . . . . . . 667--678
               R. N. Bearon and   
               D. Grünbaum   From individual behaviour to population
                                  models: a case study using swimming
                                  algae  . . . . . . . . . . . . . . . . . 679--697
            Hisashi Ohtsuki and   
                Martin A. Nowak   Evolutionary stability on graphs . . . . 698--707
                      Anonymous   Author Index . . . . . . . . . . . . . . 708--710
                      Anonymous   Subject Index  . . . . . . . . . . . . . 711--716
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 553--716 (21 April 2008) . . . . . ??


Journal of Theoretical Biology
Volume 252, Number 1, May 7, 2008

             C. Tristan Stayton   Is convergence surprising? An
                                  examination of the frequency of
                                  convergence in simulated datasets  . . . 1--14
                K. Veluraja and   
   Arunachalam N. Seethalakshmi   Dynamics of sialyl Lewis a in aqueous
                                  solution and prediction of the structure
                                  of the sialyl Lewis a -SelectinE complex 15--23
        J. Christian J. Ray and   
                  Jian Wang and   
                  John Chan and   
            Denise E. Kirschner   The timing of TNF and IFN-$ \gamma $
                                  signaling affects macrophage activation
                                  strategies during \bionameMycobacterium
                                  tuberculosis infection . . . . . . . . . 24--38
Julián Simón López-Villalta   A metabolic view of the
                                  diversity-stability relationship . . . . 39--42
               F. Bartumeus and   
                 J. Catalan and   
          G. M. Viswanathan and   
               E. P. Raposo and   
                M. G. E. da Luz   The influence of turning angles on the
                                  success of non-oriented animal searches  43--55
                Clara Prats and   
         Antoni Giró and   
               Jordi Ferrer and   
        Daniel López and   
               Josep Vives-Rego   Analysis and IbM simulation of the
                                  stages in bacterial lag phase: Basis for
                                  an updated definition  . . . . . . . . . 56--68
             Nathan D. Dees and   
                Sonya Bahar and   
             Ricardo Garcia and   
                     Frank Moss   Patch exploitation in two dimensions:
                                  From Daphnia to simulated foragers . . . 69--76
            Bernhard Voelkl and   
                Ronald Noë   The influence of social structure on the
                                  propagation of social information in
                                  artificial primate groups: a graph-based
                                  simulation approach  . . . . . . . . . . 77--86
           Tsutomu Matsuoka and   
                    Hiromi Seno   Ecological balance in the native
                                  population dynamics may cause the
                                  paradox of pest control with harvesting  87--97
                G. Mitchell and   
              J. P. Bobbitt and   
                     S. Devries   Cerebral perfusion pressure in giraffe:
                                  Modelling the effects of head-raising
                                  and -lowering  . . . . . . . . . . . . . 98--108
              Zeljko Bajzer and   
                Thomas Carr and   
           Kresimir Josi\'c and   
         Stephen J. Russell and   
                   David Dingli   Modeling of cancer virotherapy with
                                  recombinant measles viruses  . . . . . . 109--122
              M. R. Bennett and   
                 L. Farnell and   
                   W. G. Gibson   Origins of the BOLD changes due to
                                  synaptic activity at astrocytes abutting
                                  arteriolar smooth muscle . . . . . . . . 123--130
             Shuji Ishihara and   
                 Tatsuo Shibata   Mutual interaction in network motifs
                                  robustly sharpens gene expression in
                                  developmental processes  . . . . . . . . 131--144
                Yuchen Yang and   
              Erwin Tantoso and   
                     Kuo-Bin Li   Remote protein homology detection using
                                  recurrence quantification analysis and
                                  amino acid physicochemical properties    145--154
          Timothy C. Reluga and   
                Jan Medlock and   
               Alan S. Perelson   Backward bifurcations and multiple
                                  equilibria in epidemic models with
                                  structured immunity  . . . . . . . . . . 155--165
                    M. Sato and   
                      D. Waxman   Adaptation to slow environmental change,
                                  with apparent anticipation of selection  166--172
                Joseph Fass and   
                    Chi Pak and   
              James Bamburg and   
                  Alex Mogilner   Stochastic simulation of actin dynamics
                                  reveals the role of annealing and
                                  fragmentation  . . . . . . . . . . . . . 173--183
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--184 (7 May 2008)  . . . . . . . ??

Journal of Theoretical Biology
Volume 252, Number 2, May 21, 2008

                     Eric Smith   Thermodynamics of natural selection I:
                                  Energy flow and the limits on
                                  organization . . . . . . . . . . . . . . 185--197
                     Eric Smith   Thermodynamics of natural selection II:
                                  Chemical Carnot cycles . . . . . . . . . 198--212
                     Eric Smith   Thermodynamics of natural selection III:
                                  Landauer's principle in computation and
                                  chemistry  . . . . . . . . . . . . . . . 213--220
      Rachata Muneepeerakul and   
            Enrico Bertuzzo and   
             Andrea Rinaldo and   
       Ignacio Rodriguez-Iturbe   Patterns of vegetation biodiversity: The
                                  roles of dispersal directionality and
                                  river network structure  . . . . . . . . 221--229
             Hanna Isaksson and   
  Corrinus C. van Donkelaar and   
                Rik Huiskes and   
                      Keita Ito   A mechano-regulatory bone-healing model
                                  incorporating cell-phenotype specific
                                  activity . . . . . . . . . . . . . . . . 230--246
              A. V. Melkikh and   
                M. I. Sutormina   Model of active transport of ions in
                                  cardiac cell . . . . . . . . . . . . . . 247--254
             Filippo Gualla and   
             Paolo Cermelli and   
              Sergio Castellano   Is there a role for amplifiers in sexual
                                  selection? . . . . . . . . . . . . . . . 255--271
                Max J. Kurz and   
      Melissa Scott-Pandorf and   
             Chris Arellano and   
                Diane Olsen and   
                  Greg Whitaker   The penguin waddling gait pattern has a
                                  more consistent step width than step
                                  length . . . . . . . . . . . . . . . . . 272--276
         Yoshitaka Kamimura and   
                    Jun Abe and   
                    Hiroshi Ito   The continuous public goods game and the
                                  evolution of cooperative sex ratios  . . 277--287
              Bart Haegeman and   
              Rampal S. Etienne   Relaxing the zero-sum assumption in
                                  neutral biodiversity theory  . . . . . . 288--294
          Urszula Ledzewicz and   
           Heinz Schättler   Optimal and suboptimal protocols for a
                                  class of mathematical models of tumor
                                  anti-angiogenesis  . . . . . . . . . . . 295--312
         Karin M. Leiderman and   
            Laura A. Miller and   
              Aaron L. Fogelson   The effects of spatial inhomogeneities
                                  on flow through the endothelial surface
                                  layer  . . . . . . . . . . . . . . . . . 313--325
  Daniel A. M. M. Silvestre and   
       José F. Fontanari   Package models and the information
                                  crisis of prebiotic evolution  . . . . . 326--337
             Stephen J. Willson   Reconstruction of certain phylogenetic
                                  networks from the genomes at their
                                  leaves . . . . . . . . . . . . . . . . . 338--349
                        Hao Lin   The modified Mahalanobis Discriminant
                                  for predicting outer membrane proteins
                                  by using Chou's pseudo amino acid
                                  composition  . . . . . . . . . . . . . . 350--356
               K. M. ElSawy and   
                A. Taormina and   
                 R. Twarock and   
                     L. Vaughan   Dynamical implications of Viral Tiling
                                  Theory . . . . . . . . . . . . . . . . . 357--369
                Lutz Brusch and   
                Andreas Deutsch   The coherence of the vesicle theory of
                                  protein secretion  . . . . . . . . . . . 370--373
                Stephen Rothman   Reply to the letter of Professors Brusch
                                  and Deutsch  . . . . . . . . . . . . . . 374--375
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 185--376 (21 May 2008) . . . . . . ??

Journal of Theoretical Biology
Volume 252, Number 3, June, 2008

           Athel Cornish-Bowden   Reinhart Heinrich (1946--2006) . . . . . 377--378
           Athel Cornish-Bowden   Reinhart Heinrich (1946--2006): An
                                  annotated bibliography . . . . . . . . . 379--387
                Tom A. Rapoport   Reinhart Heinrich --- an unassuming
                                  intellectual giant . . . . . . . . . . . 388--390
           Philip W. Kuchel and   
                 David J. Philp   Isotopomer subspaces as indicators of
                                  metabolic-pathway structure  . . . . . . 391--401
            V. A. Selivanov and   
               P. de Atauri and   
            J. J. Centelles and   
                 J. Cadefau and   
                   J. Parra and   
            R. Cussó and   
                J. Carreras and   
                    M. Cascante   The changes in the energy metabolism of
                                  human muscle induced by training . . . . 402--410
       Athel Cornish-Bowden and   
María Luz Cárdenas   Self-organization at the origin of life  411--418
                Marko Marhl and   
                Marko Gosak and   
                Matjaz Perc and   
              C. Jane Dixon and   
                  Anne K. Green   Spatio-temporal modelling explains the
                                  effect of reduced plasma membrane
                                  Ca$^{2+}$ efflux on intracellular
                                  Ca$^{2+}$ oscillations in hepatocytes    419--426
          Francisco Montero and   
    Juan Carlos Nuño and   
Enrique Meléndez-Hevia and   
           Felix Olasagasti and   
        Sara Vázquez and   
          Federico Morán   Stoichiometric analysis of
                                  self-maintaining metabolisms . . . . . . 427--432
            Jörn Behre and   
             Thomas Wilhelm and   
              Axel von Kamp and   
               Eytan Ruppin and   
                Stefan Schuster   Structural robustness of metabolic
                                  networks with respect to multiple
                                  knockouts  . . . . . . . . . . . . . . . 433--441
             Susanne Gerber and   
          Heike Aßmus and   
             Barbara Bakker and   
                     Edda Klipp   Drug-efficacy depends on the inhibitor
                                  type and the target position in a
                                  metabolic network --- a systematic study 442--455
          Carola Huthmacher and   
            Christoph Gille and   
  Hermann-Georg Holzhütter   A computational analysis of protein
                                  interactions in metabolic networks
                                  reveals novel enzyme pairs potentially
                                  involved in metabolic channeling . . . . 456--464
           Anuradha Chauhan and   
             Stefan Legewie and   
    Pål O. Westermark and   
           Stephan Lorenzen and   
               Hanspeter Herzel   A mesoscale model of G1/S phase
                                  transition in liver regeneration . . . . 465--473
                Ales Fajmut and   
                   Milan Brumen   MLC-kinase/phosphatase control of
                                  Ca$^{2+}$ signal transduction in airway
                                  smooth muscles . . . . . . . . . . . . . 474--481
         Frank J. Bruggeman and   
              Ionela Oancea and   
                 Roel van Driel   Exploring the behavior of small
                                  eukaryotic gene networks . . . . . . . . 482--487
             F. B. du Preez and   
                R. Conradie and   
              G. P. Penkler and   
                    K. Holm and   
        F. L. J. van Dooren and   
                    J. L. Snoep   A comparative analysis of kinetic models
                                  of erythrocyte glycolysis  . . . . . . . 488--496
            Stefan Schuster and   
            Thomas Pfeiffer and   
                  David A. Fell   Is maximization of molar yield in
                                  metabolic networks favoured by
                                  evolution? . . . . . . . . . . . . . . . 497--504
Enrique Meléndez-Hevia and   
 Nancy Montero-Gómez and   
              Francisco Montero   From prebiotic chemistry to cellular
                                  metabolism --- the chemical evolution of
                                  metabolism before Darwinian natural
                                  selection  . . . . . . . . . . . . . . . 505--519
          Christine Nazaret and   
              Jean-Pierre Mazat   An old paper revisited: ``A mathematical
                                  model of carbohydrate energy metabolism.
                                  Interaction between glycolysis, the
                                  Krebs cycle and the H-transporting
                                  shuttles at varying ATPases load'' by V.
                                  V. Dynnik, R. Heinrich and E. E. Sel'kov 520--529
             Thomas Handorf and   
             Nils Christian and   
        Oliver Ebenhöh and   
                    Daniel Kahn   An environmental perspective on
                                  metabolism . . . . . . . . . . . . . . . 530--537
            Douglas B. Kell and   
                   Pedro Mendes   The markup is the model: Reasoning about
                                  systems biology models in the Semantic
                                  Web era  . . . . . . . . . . . . . . . . 538--543
  Enrique Meléndez-Hevia   Memories of Reinhart Heinrich  . . . . . 544--545
           Johann M. Rohwer and   
         Jan-Hendrik S. Hofmeyr   Identifying and characterising
                                  regulatory metabolites with generalised
                                  supply-demand analysis . . . . . . . . . 546--554
             Hans V. Westerhoff   Signalling control strength  . . . . . . 555--567
              Jean-Pierre Mazat   The first time I met Reinhart Heinrich
                                  \ldots . . . . . . . . . . . . . . . . . 568--568
            Fernando Ortega and   
             Marta Cascante and   
                  Luis Acerenza   Kinetic properties required for
                                  sustained or paradoxical control of
                                  metabolic fluxes under large changes in
                                  enzyme activities  . . . . . . . . . . . 569--573
           Albert Goldbeter and   
        Olivier Pourquié   Modeling the segmentation clock as a
                                  network of coupled oscillations in the
                                  Notch, Wnt and FGF signaling pathways    574--585
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc

Journal of Theoretical Biology
Volume 252, Number 4, June 21, 2008

        Sebastian E. Ahnert and   
          Thomas M. A. Fink and   
                Andrei Zinovyev   How much non-coding DNA do eukaryotes
                                  require? . . . . . . . . . . . . . . . . 587--592
         Alexander R. Small and   
               Adrian Neagu and   
               Franck Amyot and   
                Dan Sackett and   
        Victor Chernomordik and   
              Amir Gandjbakhche   Spatial distribution of VEGF isoforms
                                  and chemotactic signals in the vicinity
                                  of a tumor . . . . . . . . . . . . . . . 593--607
                 Weijiu Liu and   
                   Fusheng Tang   Modeling a simplified regulatory system
                                  of blood glucose at molecular levels . . 608--620
           Michael J. Jeger and   
      Pieter J. Wijngaarden and   
               Rolf F. Hoekstra   Adaptation to the cost of resistance in
                                  a haploid clonally reproducing organism:
                                  The role of mutation, migration and
                                  selection  . . . . . . . . . . . . . . . 621--632
                 M. Shapiro and   
                 K. A. Duca and   
                     K. Lee and   
          E. Delgado-Eckert and   
                 J. Hawkins and   
               A. S. Jarrah and   
            R. Laubenbacher and   
                N. F. Polys and   
                V. Hadinoto and   
           D. A. Thorley-Lawson   A virtual look at Epstein-Barr virus
                                  infection: Simulation mechanism  . . . . 633--648
             Carlos A. Lugo and   
                 Alan J. McKane   The characteristics of species in an
                                  evolutionary food web model  . . . . . . 649--661
            G. A. Lichtwark and   
                   A. M. Wilson   Optimal muscle fascicle length and
                                  tendon stiffness for maximising
                                  gastrocnemius efficiency during human
                                  walking and running  . . . . . . . . . . 662--673
     Clément Calenge and   
                Mathieu Basille   A general framework for the statistical
                                  exploration of the ecological niche  . . 674--685
            Shinsuke Suzuki and   
                   Eizo Akiyama   Chaos, oscillation and the evolution of
                                  indirect reciprocity in $n$-person games 686--693
                Alan Grafen and   
                 Marco Archetti   Natural selection of altruism in
                                  inelastic viscous homogeneous
                                  populations  . . . . . . . . . . . . . . 694--710
               Sheng-Nan Wu and   
             Bing-Shuo Chen and   
               Ming-Wei Lin and   
                   Yen-Chin Liu   Contribution of slowly inactivating
                                  potassium current to delayed firing of
                                  action potentials in NG108-15 neuronal
                                  cells: Experimental and theoretical
                                  studies  . . . . . . . . . . . . . . . . 711--721
               Sohyun Hwang and   
              Seung-Woo Son and   
             Sang Cheol Kim and   
              Young Joo Kim and   
              Hawoong Jeong and   
                     Doheon Lee   A protein interaction network associated
                                  with asthma  . . . . . . . . . . . . . . 722--731
               Shingo Iwami and   
          Yasuhiro Takeuchi and   
        Andrei Korobeinikov and   
                   Xianning Liu   Prevention of avian influenza epidemic:
                                  What policy should we choose?  . . . . . 732--741
            Anas M. Ababneh and   
            Zaid Q. Ababneh and   
                 Cathy C. Large   DNA A-tracts bending: Polarization
                                  effects on electrostatic interactions
                                  across their minor groove  . . . . . . . 742--749
              Michael Stich and   
             Carlos Briones and   
            Susanna C. Manrubia   On the structural repertoire of pools of
                                  short, random RNA sequences  . . . . . . 750--763
          Theodore C. Goldsmith   Aging, evolvability, and the individual
                                  benefit requirement; medical
                                  implications of aging theory
                                  controversies  . . . . . . . . . . . . . 764--768
                    Sven Kurbel   Are extracellular osmolality and sodium
                                  concentration determined by Donnan
                                  effects of intracellular protein charges
                                  and of pumped sodium?  . . . . . . . . . 769--772
                   Samuli Helle   Height, weight, body mass index and
                                  offspring sex at birth in contemporary
                                  Finnish women  . . . . . . . . . . . . . 773--775
                      Anonymous   Author Index . . . . . . . . . . . . . . 776--778
                      Anonymous   Subject Index  . . . . . . . . . . . . . 779--786
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 587--786 (21 June 2008)  . . . . . ??


Journal of Theoretical Biology
Volume 253, Number 1, July 7, 2008

               Xianning Liu and   
          Yasuhiro Takeuchi and   
                   Shingo Iwami   SVIR epidemic models with vaccination
                                  strategies . . . . . . . . . . . . . . . 1--11
                 Wendi Wang and   
             Shinji Nakaoka and   
              Yasuhiro Takeuchi   Invest conflicts of adult predators  . . 12--23
               Veronica Shi and   
         Abdessamad Tridane and   
                     Yang Kuang   A viral load-based cellular automata
                                  approach to modeling HIV dynamics and
                                  drug treatment . . . . . . . . . . . . . 24--35
                 Kaifa Wang and   
                 Wendi Wang and   
                   Shiping Song   Dynamics of an HBV model with diffusion
                                  and delay  . . . . . . . . . . . . . . . 36--44
                    Ryota Horie   An optimization framework of biological
                                  dynamical systems  . . . . . . . . . . . 45--54
             Kazuki Kawachi and   
              Motohide Seki and   
             Hiraku Yoshida and   
                Yohei Otake and   
        Katsuhide Warashina and   
                   Hiroshi Ueda   A rumor transmission model with various
                                  contact interactions . . . . . . . . . . 55--60
            Sachi Yamaguchi and   
                Yoichi Yusa and   
           Shigeyuki Yamato and   
               Satoru Urano and   
              Satoshi Takahashi   Mating group size and evolutionarily
                                  stable pattern of sexuality in barnacles 61--73
               Christian Cibert   Are the local adjustments of the
                                  relative spatial frequencies of the
                                  dynein arms and the $ \beta $-tubulin
                                  monomers involved in the regulation of
                                  the ``9+2'' axoneme? . . . . . . . . . . 74--89
                Jianbo Tong and   
                Shuling Liu and   
                  Peng Zhou and   
                   Bulan Wu and   
                    Zhiliang Li   A novel descriptor of amino acids and
                                  its application in peptide QSAR  . . . . 90--97
    Raja Venkatasubramanian and   
          Michael A. Henson and   
                 Neil S. Forbes   Integrating cell-cycle progression, drug
                                  penetration and energy metabolism to
                                  identify improved cancer therapeutic
                                  strategies . . . . . . . . . . . . . . . 98--117
               Julien Arino and   
                Fred Brauer and   
       P. van den Driessche and   
             James Watmough and   
                    Jianhong Wu   A model for influenza with vaccination
                                  and antiviral treatment  . . . . . . . . 118--130
             Gerhard Jäger   Evolutionary stability conditions for
                                  signaling games with costly signals  . . 131--141
       Andrew T. Sornborger and   
               Malcolm R. Adams   The evolution of fidelity in sensory
                                  systems  . . . . . . . . . . . . . . . . 142--150
                Takuyo Aita and   
                  Yuzuru Husimi   Fitting protein-folding free energy
                                  landscape for a certain conformation to
                                  an NK fitness landscape  . . . . . . . . 151--161
          Maria Christianou and   
            Giorgos D. Kokkoris   Complexity does not affect stability in
                                  feasible model communities . . . . . . . 162--169
      George S. B. Williams and   
          Evan J. Molinelli and   
               Gregory D. Smith   Modeling local and global intracellular
                                  calcium responses mediated by diffusely
                                  distributed inositol 1,4,5-trisphosphate
                                  receptors  . . . . . . . . . . . . . . . 170--188
           James A. Roberts and   
              Peter A. Robinson   Modeling absence seizure dynamics:
                                  Implications for basic mechanisms and
                                  measurement of thalamocortical and
                                  corticothalamic latencies  . . . . . . . 189--201
                 M. A. Ball and   
               G. A. Parker and   
                    J. C. Chubb   The evolution of complex life cycles
                                  when parasite mortality is size- or
                                  time-dependent . . . . . . . . . . . . . 202--214
               Keith Slevin and   
                  John Waterlow   Theoretical analysis of the importance
                                  of recycling in measurements of protein
                                  turnover by constant infusion of a
                                  labelled amino acid  . . . . . . . . . . 215--219
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--220 (7 July 2008) . . . . . . . ??

Journal of Theoretical Biology
Volume 253, Number 2, July 21, 2008

Szabolcs Számadó and   
              Ferenc Szalai and   
        István Scheuring   The effect of dispersal and
                                  neighbourhood in games of cooperation    221--227
                  T. Garske and   
                   C. J. Rhodes   The effect of superspreading on epidemic
                                  outbreak size distributions  . . . . . . 228--237
                Adam Kapela and   
      Anastasios Bezerianos and   
           Nikolaos M. Tsoukias   A mathematical model of Ca$^{2+}$
                                  dynamics in rat mesenteric smooth muscle
                                  cell: Agonist and NO stimulation . . . . 238--260
              Daijiro Okada and   
                Paul M. Bingham   Human uniqueness-self-interest and
                                  social cooperation . . . . . . . . . . . 261--270
                     Moxun Tang   The mean and noise of stochastic gene
                                  transcription  . . . . . . . . . . . . . 271--280
             Giulia Menconi and   
                Vieri Benci and   
               Marcello Buiatti   Data compression and genomes: a
                                  two-dimensional life domain map  . . . . 281--288
       Joydev Chattopadhyay and   
          Samrat Chatterjee and   
                 Ezio Venturino   Patchy agglomeration as a transition
                                  from monospecies to recurrent plankton
                                  blooms . . . . . . . . . . . . . . . . . 289--295
Jesús Gómez-Gardeñes and   
              Julia Poncela and   
   Luis Mario Floría and   
                   Yamir Moreno   Natural selection of cooperation and
                                  degree hierarchy in heterogeneous
                                  populations  . . . . . . . . . . . . . . 296--301
               A. Ennemoser and   
                    N. Hausmann   Regulation of human eye growth by the
                                  energy density of the radiation in the
                                  retina --- a biophysical theory in
                                  ophthalmology  . . . . . . . . . . . . . 302--309
             Guang-Ya Zhang and   
                  Bai-Shan Fang   Predicting the cofactors of
                                  oxidoreductases based on amino acid
                                  composition distribution and Chou's
                                  amphiphilic pseudo-amino acid
                                  composition  . . . . . . . . . . . . . . 310--315
     Mauno Rönkkö and   
                     Garry Wong   Modeling the \bionameC. elegans nematode
                                  and its environment using a particle
                                  system . . . . . . . . . . . . . . . . . 316--322
               Volkan Sevim and   
               Per Arne Rikvold   Chaotic gene regulatory networks can be
                                  robust against mutations and noise . . . 323--332
         Matthew A. Neimark and   
 Angelos-Aristeidis Konstas and   
                Jae H. Choi and   
            Andrew F. Laine and   
             John Pile-Spellman   Brain cooling maintenance with cooling
                                  cap following induction with
                                  intracarotid cold saline infusion: a
                                  quantitative model . . . . . . . . . . . 333--344
          William H. E. Day and   
             F. R. McMorris and   
                 Mark Wilkinson   Explosions and hot spots in supertree
                                  methods  . . . . . . . . . . . . . . . . 345--348
          Robert C. Hilborn and   
                Jessie D. Erwin   Stochastic coherence in an oscillatory
                                  gene circuit model . . . . . . . . . . . 349--354
                  Dominique Chu   The evolution of group-level pathogenic
                                  traits . . . . . . . . . . . . . . . . . 355--362
            Jens H. Kroeger and   
              Anja Geitmann and   
                   Martin Grant   Model for calcium dependent oscillatory
                                  growth in pollen tubes . . . . . . . . . 363--374
               Ashish Anand and   
         Ganesan Pugalenthi and   
                P. N. Suganthan   Predicting protein structural class by
                                  SVM with class-wise optimized features
                                  and decision probabilities . . . . . . . 375--380
               DongYoub Lee and   
          Anthony S. Wexler and   
       Michelle V. Fanucchi and   
             Charles G. Plopper   Expiration rate drives human airway
                                  design . . . . . . . . . . . . . . . . . 381--387
                  Chao Chen and   
               Li-Xuan Chen and   
              Xiao-Yong Zou and   
                  Pei-Xiang Cai   Predicting protein structural class
                                  based on multi-features fusion . . . . . 388--392
                    Ning Du and   
                  Jintu Fan and   
                  Shuo Chen and   
                       Yang Liu   A hydraulic-photosynthetic model based
                                  on extended HLH and its application to
                                  Coast redwood (\bionameSequoia
                                  sempervirens)  . . . . . . . . . . . . . 393--400
               William H. James   Some comments on the paper of Grant
                                  (2007) . . . . . . . . . . . . . . . . . 401--404
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 221--404 (21 July 2008)  . . . . . ??

Journal of Theoretical Biology
Volume 253, Number 3, August 7, 2008

         Philip J. Wallhead and   
           Adrian P. Martin and   
               Meric A. Srokosz   Spatially implicit plankton population
                                  models: Transient spatial variability    405--423
           Ross S. Davidson and   
               Glenn Marion and   
           Michael R. Hutchings   Effects of host social hierarchy on
                                  disease persistence  . . . . . . . . . . 424--433
              C. M. Altaner and   
                   M. C. Jarvis   Modelling polymer interactions of the
                                  `molecular Velcro' type in wood under
                                  mechanical stress  . . . . . . . . . . . 434--445
                Murat Kasap and   
                      Ali Sazci   The comparison of VEGFR-1-binding domain
                                  of VEGF-A with modelled VEGF-C sheds
                                  light on receptor specificity  . . . . . 446--451
      Mikhail V. Ivanchenko and   
             Thomas Nowotny and   
        Allen I. Selverston and   
          Mikhail I. Rabinovich   Pacemaker and network mechanisms of
                                  rhythm generation: Cooperation and
                                  competition  . . . . . . . . . . . . . . 452--461
                 Sandip Roy and   
           James M. Krueger and   
            David M. Rector and   
                        Yan Wan   A network model for activity-dependent
                                  sleep regulation . . . . . . . . . . . . 462--468
              Jaromir S. Foltan   tRNA genes and the genetic code  . . . . 469--482
           Jeffrey R. Groff and   
               Gregory D. Smith   Calcium-dependent inactivation and the
                                  dynamics of calcium puffs and sparks . . 483--499
               Paul D. Williams   Unhealthy herds: Some epidemiological
                                  consequences of host heterogeneity in
                                  predator-host-parasite systems . . . . . 500--507
       Antonio Marín and   
                      Xuhua Xia   GC skew in protein-coding genes between
                                  the leading and lagging strands in
                                  bacterial genomes: New substitution
                                  models incorporating strand bias . . . . 508--513
           Vipin Srivastava and   
               D. J. Parker and   
                  S. F. Edwards   The nervous system might `orthogonalize'
                                  to discriminate  . . . . . . . . . . . . 514--517
               Sang-Hee Lee and   
                     Nan-Yao Su   A simulation study of territory size
                                  distribution of mangrove termites on
                                  Atlantic coast of Panama . . . . . . . . 518--523
                 S. M. Wise and   
            J. S. Lowengrub and   
             H. B. Frieboes and   
                    V. Cristini   Three-dimensional multispecies nonlinear
                                  tumor growth --- I: Model and numerical
                                  method . . . . . . . . . . . . . . . . . 524--543
       Alfonso Bueno-Orovio and   
        Elizabeth M. Cherry and   
               Flavio H. Fenton   Minimal model for human ventricular
                                  action potentials in tissue  . . . . . . 544--560
         Bernard J. Brennan and   
          Samuel M. Flaxman and   
              Suzanne H. Alonzo   Female alternative reproductive
                                  behaviors: The effect of female group
                                  size on mate assessment and copying  . . 561--569
          Fenix W. D. Huang and   
            Christian M. Reidys   Statistics of canonical RNA pseudoknot
                                  structures . . . . . . . . . . . . . . . 570--578
                  Pufeng Du and   
                       Yanda Li   Prediction of C-to-U RNA editing sites
                                  in plant mitochondria using both
                                  biochemical and evolutionary information 579--586
              Massimo Di Giulio   Permuted tRNA genes of Cyanidioschyzon
                                  merolae, the origin of the tRNA molecule
                                  and the root of the Eukarya domain . . . 587--592
                Soyoka Muko and   
                      Yoh Iwasa   Spatial heterogeneity of mortality and
                                  temporal fluctuation in fertility
                                  promote coexistence but not vice versa:
                                  a random-community approach  . . . . . . 593--600
               J. G. Sumner and   
           M. A. Charleston and   
              L. S. Jermiin and   
                   P. D. Jarvis   Markov invariants, plethysms, and
                                  phylogenetics  . . . . . . . . . . . . . 601--615
               R. P. Araujo and   
            E. F. Petricoin and   
                   L. A. Liotta   Critical dependence of blood-borne
                                  biomarker concentrations on the
                                  half-lives of their carrier proteins . . 616--622
               Roland Pohlmeyer   The genetic code revisited . . . . . . . 623--624
      Jean-Hugues B. Hatier and   
                 Kevin S. Gould   Foliar anthocyanins as modulators of
                                  stress signals . . . . . . . . . . . . . 625--627
             Andrew Morozov and   
                    Bai-Lian Li   Corrigendum to ``Abundance patterns in
                                  multi-species communities exposed to
                                  habitat destruction'': [J. Theor. Biol.
                                  \bf 251 (2008) 593--605] . . . . . . . . 628--628
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 405--628 (7 August 2008) . . . . . ??

Journal of Theoretical Biology
Volume 253, Number 4, August 21, 2008

      Ricard V. Solé and   
Carlos Rodríguez-Caso and   
        Thomas S. Deisboeck and   
            Joan Saldaña   Cancer stem cells as the engine of
                                  unstable tumor progression . . . . . . . 629--637
                  W. Konrad and   
          A. Roth-Nebelsick and   
                       M. Grein   Modelling of stomatal density response
                                  to atmospheric CO2 . . . . . . . . . . . 638--658
          Yukio-Pegio Gunji and   
         Tomohiro Shirakawa and   
           Takayuki Niizato and   
                  Taichi Haruna   Minimal model of a cell connecting
                                  amoebic motion and adaptive transport
                                  networks . . . . . . . . . . . . . . . . 659--667
             Young-Seon Lee and   
                James P. Keener   A calcium-induced calcium release
                                  mechanism mediated by calsequestrin  . . 668--679
        Natalia L. Komarova and   
            Kimberly A. Jameson   Population heterogeneity and color
                                  stimulus heterogeneity in agent-based
                                  color categorization . . . . . . . . . . 680--700
Angélique Stéphanou and   
               Eleni Mylona and   
              Mark Chaplain and   
               Philippe Tracqui   A computational model of cell migration
                                  coupling the growth of focal adhesions
                                  with oscillatory cell protrusions  . . . 701--716
           Hanen Ben Hassen and   
              Afif Masmoudi and   
                    Ahmed Rebai   Causal inference in biomolecular
                                  pathways using a Bayesian network
                                  approach and an Implicit method  . . . . 717--724
                   M. Anand and   
               K. Rajagopal and   
                K. R. Rajagopal   A model for the formation, growth, and
                                  lysis of clots in quiescent plasma. A
                                  comparison between the effects of
                                  antithrombin III deficiency and protein
                                  C deficiency . . . . . . . . . . . . . . 725--738
                Petro Babak and   
                   Fangliang He   Species abundance distribution and
                                  dynamics in two locally coupled
                                  communities  . . . . . . . . . . . . . . 739--748
                 Helong Liu and   
                Jingyuan Yu and   
                  Guangtian Zhu   Global behaviour of an
                                  age-infection-structured HIV model with
                                  impulsive drug-treatment strategy  . . . 749--754
         George D. Tsibidis and   
                   Jorge Ripoll   Investigation of binding mechanisms of
                                  nuclear proteins using confocal scanning
                                  laser microscopy and FRAP  . . . . . . . 755--768
                 Tanja Gernhard   The conditioned reconstructed process    769--778
           Akihiko Nakajima and   
                Kunihiko Kaneko   Regulative differentiation as
                                  bifurcation of interacting cell
                                  population . . . . . . . . . . . . . . . 779--787
           Hermann J. Eberl and   
            Rangarajan Sudarsan   Exposure of biofilms to slow flow
                                  fields: The convective contribution to
                                  growth and disinfection  . . . . . . . . 788--807
                    T. Keef and   
                 R. Twarock and   
                   K. M. Elsawy   Blueprints for viral capsids in the
                                  family of Polyomaviridae . . . . . . . . 808--816
               Xiao-Fei Chi and   
             Xiang-Yang Lou and   
                   Qing-Yao Shu   Progressive fine mapping in experimental
                                  populations: An improved strategy toward
                                  positional cloning . . . . . . . . . . . 817--823
               Bor-Sen Chen and   
            Chia-Hung Chang and   
                Yung-Jen Chuang   Robust model matching control of immune
                                  systems under environmental
                                  disturbances: Dynamic game approach  . . 824--837
                 Alon Manor and   
                Nadav M. Shnerb   Facilitation, competition, and
                                  vegetation patchiness: From scale free
                                  distribution to patterns . . . . . . . . 838--842
                Silvia Daun and   
             Jonathan Rubin and   
             Yoram Vodovotz and   
                Anirban Roy and   
              Robert Parker and   
                Gilles Clermont   An ensemble of models of the acute
                                  inflammatory response to bacterial
                                  lipopolysaccharide in rats: Results from
                                  parameter space reduction  . . . . . . . 843--853
                     Qi Dai and   
                  Tianming Wang   Use of linear regression model to
                                  compare RNA secondary structures . . . . 854--860
                      Anonymous   Author Index . . . . . . . . . . . . . . 861--863
                      Anonymous   Subject Index  . . . . . . . . . . . . . 864--872
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 629--872 (21 August 2008)  . . . . ??


Journal of Theoretical Biology
Volume 254, Number 1, September 7, 2008

                Eirikur Palsson   A $3$-D model used to explore how cell
                                  adhesion and stiffness affect cell
                                  sorting and movement in multicellular
                                  systems  . . . . . . . . . . . . . . . . 1--13
                H. Sedaghat and   
                 M. A. Wood and   
                 J. W. Cain and   
                C. K. Cheng and   
           C. M. Baumgarten and   
                     D. M. Chan   Complex temporal patterns of spontaneous
                                  initiation and termination of reentry in
                                  a loop of cardiac tissue . . . . . . . . 14--26
                Simone Frey and   
              Thomas Millat and   
             Stefan Hohmann and   
               Olaf Wolkenhauer   How quantitative measures unravel design
                                  principles in multi-stage
                                  phosphorylation cascades . . . . . . . . 27--36
            Anna Ochab-Marcinek   Predicting the asymmetric response of a
                                  genetic switch to noise  . . . . . . . . 37--44
                  J. Turner and   
               R. G. Bowers and   
                  D. Clancy and   
               M. C. Behnke and   
                R. M. Christley   A network model of \bionameE. coli O157
                                  transmission within a typical UK dairy
                                  herd: The effect of heterogeneity and
                                  clustering on the prevalence of
                                  infection  . . . . . . . . . . . . . . . 45--54
              Elise Billoir and   
Marie Laure Delignette-Muller and   
Alexandre R. R. Péry and   
            Olivier Geffard and   
               Sandrine Charles   Statistical cautions when estimating
                                  DEBtox parameters  . . . . . . . . . . . 55--64
           Nicolas Bousquet and   
           Thierry Duchesne and   
              Louis-Paul Rivest   Redefining the maximum sustainable yield
                                  for the Schaefer population model
                                  including multiplicative environmental
                                  noise  . . . . . . . . . . . . . . . . . 65--75
         André Dumas and   
                   James France   Modelling the ontogeny of ectotherms
                                  exhibiting indeterminate growth  . . . . 76--81
        Joanna Mazurkiewicz and   
      Jaros\law Zygierewicz and   
            Mikolaj Korzy\'nski   Short term synaptic depression model ---
                                  analytical solution and analysis . . . . 82--88
               Anca R\vadulescu   Schizophrenia --- a parameters' game?    89--98
              Peter Bastian and   
Andrés Chavarr\'ìa-Krauser and   
           Christian Engwer and   
           Willi Jäger and   
               Sven Marnach and   
                Mariya Ptashnyk   Modelling in vitro growth of dense root
                                  networks . . . . . . . . . . . . . . . . 99--109
           Tomasz Lipniacki and   
                  Beata Hat and   
            James R. Faeder and   
            William S. Hlavacek   Stochastic effects and bistability in T
                                  cell receptor signaling  . . . . . . . . 110--122
                  Yujie Cai and   
                    Jun Sun and   
                   Jie Wang and   
                Yanrui Ding and   
                    Na Tian and   
               Xiangru Liao and   
                       Wenbo Xu   Optimizing the codon usage of synthetic
                                  gene with QPSO algorithm . . . . . . . . 123--127
        Laura A. Shackelton and   
               Edward C. Holmes   The role of alternative genetic codes in
                                  viral evolution and emergence  . . . . . 128--134
                      Z. Lu and   
             R. M. Mitchell and   
                R. L. Smith and   
           J. S. Van Kessel and   
            P. P. Chapagain and   
             Y. H. Schukken and   
                    Y. T. Grohn   The importance of culling in Johne's
                                  disease control  . . . . . . . . . . . . 135--146
              Bryan D. Neff and   
              Trevor E. Pitcher   Mate choice for non-additive genetic
                                  benefits: a resolution to the lek
                                  paradox  . . . . . . . . . . . . . . . . 147--155
              Robert A. Alberty   Determination of kinetic parameters of
                                  enzyme-catalyzed reactions with a
                                  minimum number of velocity measurements  156--163
              Hsiuying Wang and   
             Yun-Huei Tzeng and   
                  Wen-Hsiung Li   Improved variance estimators for one-
                                  and two-parameter models of nucleotide
                                  substitution . . . . . . . . . . . . . . 164--167
                Chiyu Zhang and   
                 Shungao Xu and   
                  Ji-Fu Wei and   
             Donald R. Forsdyke   Microsatellites that violate Chargaff's
                                  second parity rule have base
                                  order-dependent asymmetries in the
                                  folding energies of complementary DNA
                                  strands and may not drive speciation . . 168--177
             Simeone Marino and   
               Ian B. Hogue and   
           Christian J. Ray and   
            Denise E. Kirschner   A methodology for performing global
                                  uncertainty and sensitivity analysis in
                                  systems biology  . . . . . . . . . . . . 178--196
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--196 (7 September 2008)  . . . . ??

Journal of Theoretical Biology
Volume 254, Number 2, September 21, 2008

         Christopher Quince and   
            Peter A. Abrams and   
            Brian J. Shuter and   
                Nigel P. Lester   Biphasic growth in fish I: Theoretical
                                  foundations  . . . . . . . . . . . . . . 197--206
         Christopher Quince and   
            Brian J. Shuter and   
            Peter A. Abrams and   
                Nigel P. Lester   Biphasic growth in fish II: Empirical
                                  assessment . . . . . . . . . . . . . . . 207--214
                Yicang Zhou and   
                Kamran Khan and   
                Zhilan Feng and   
                    Jianhong Wu   Projection of tuberculosis incidence
                                  with increasing immigration trends . . . 215--228
             Mark P. Little and   
               Paolo Vineis and   
                   Guangquan Li   A stochastic carcinogenesis model
                                  incorporating multiple types of genomic
                                  instability fitted to colon cancer data  229--238
                    Jian Zu and   
                 Wendi Wang and   
          Yasuhiro Takeuchi and   
                      Bo Zu and   
                     Kaifa Wang   On evolution under symmetric and
                                  asymmetric competitions  . . . . . . . . 239--251
                    Takuyo Aita   Hierarchical distribution of ascending
                                  slopes, nearly neutral networks,
                                  highlands, and local optima at the $d$
                                  th order in an NK fitness landscape  . . 252--263
           Matthew J. Smith and   
       Jonathan A. Sherratt and   
                  Xavier Lambin   The effects of density-dependent
                                  dispersal on the spatiotemporal dynamics
                                  of cyclic populations  . . . . . . . . . 264--274
                 Jingan Cui and   
                 Xiaoxia Mu and   
                        Hui Wan   Saturation recovery leads to multiple
                                  endemic equilibria and backward
                                  bifurcation  . . . . . . . . . . . . . . 275--283
            James T. Murphy and   
                 Ray Walshe and   
                 Marc Devocelle   A computational model of
                                  antibiotic-resistance mechanisms in
                                  Methicillin-Resistant
                                  \bionameStaphylococcus aureus (MRSA) . . 284--293
         M. R. Housaindokht and   
           M. R. Bozorgmehr and   
                 M. Bahrololoom   Analysis of ligand binding to proteins
                                  using molecular dynamics simulations . . 294--300
             Josef Pánek   A comparative computational analysis of
                                  protein sequences and literature mining
                                  classify `orphan' neurotransmitter
                                  transporters . . . . . . . . . . . . . . 301--307
             Kedar Kulkarni and   
               Peter Larsen and   
           Andreas A. Linninger   Assessing chronic liver toxicity based
                                  on relative gene expression data . . . . 308--318
                   R. Tyson and   
               K. D. Newton and   
             H. Thistlewood and   
                        G. Judd   Mating rates between sterile and wild
                                  codling moths (\bionameCydia pomonella)
                                  in springtime: a simulation study  . . . 319--330
                   M. Jesse and   
                  P. Ezanno and   
                   S. Davis and   
           J. A. P. Heesterbeek   A fully coupled, mechanistic model for
                                  infectious disease dynamics in a
                                  metapopulation: Movement and epidemic
                                  duration . . . . . . . . . . . . . . . . 331--338
         Michael B. Bonsall and   
                    Ben Raymond   Lethal pathogens, non-lethal synergists
                                  and the evolutionary ecology of
                                  resistance . . . . . . . . . . . . . . . 339--349
              Quan-Xing Liu and   
                   Zhen Jin and   
                    Bai-Lian Li   Numerical investigation of spatial
                                  pattern in a vegetation model with
                                  feedback function  . . . . . . . . . . . 350--360
              Masood Banaie and   
              Yashar Sarbaz and   
       Shahriar Gharibzadeh and   
              Farzad Towhidkhah   Huntington's disease: Modeling the gait
                                  disorder and proposing novel treatments  361--367
         Tobias Reichenbach and   
              Mauro Mobilia and   
                     Erwin Frey   Self-organization of mobile populations
                                  in cyclic competition  . . . . . . . . . 368--383
              Shichang Wang and   
                 Boyu Zhang and   
                Zhenqing Li and   
              Ross Cressman and   
                         Yi Tao   Evolutionary game dynamics with
                                  impulsive effects  . . . . . . . . . . . 384--389
            Heather Hardway and   
       Bibhash Mukhopadhyay and   
              Timothy Burke and   
      Theron James Hitchman and   
                   Robin Forman   Modeling the precision and robustness of
                                  Hunchback border during Drosophila
                                  embryonic development  . . . . . . . . . 390--399
                      Dan Dediu   The role of genetic biases in shaping
                                  the correlations between languages and
                                  genes  . . . . . . . . . . . . . . . . . 400--407
            Anya K. Bershad and   
          Miguel A. Fuentes and   
              David C. Krakauer   Developmental autonomy and somatic niche
                                  construction promotes robust cell fate
                                  decisions  . . . . . . . . . . . . . . . 408--416
                B. R. Locke and   
                   S. T. Kinsey   Diffusional constraints on energy
                                  metabolism in skeletal muscle  . . . . . 417--429
              Daniel Campos and   
Vicenç Méndez and   
                 Sergei Fedotov   The effects of distributed life cycles
                                  on the dynamics of viral infections  . . 430--438
 Catherine A. A. Beauchemin and   
          James J. McSharry and   
          George L. Drusano and   
             Jack T. Nguyen and   
            Gregory T. Went and   
             Ruy M. Ribeiro and   
               Alan S. Perelson   Modeling amantadine treatment of
                                  influenza A virus in vitro . . . . . . . 439--451
      Krzysztof Puszy\'nski and   
                  Beata Hat and   
               Tomasz Lipniacki   Oscillations and bistability in the
                                  stochastic model of p53 regulation . . . 452--465
                    Ming Lu and   
                Lufang Zhou and   
         William C. Stanley and   
           Marco E. Cabrera and   
           Gerald M. Saidel and   
                         Xin Yu   Role of the malate-aspartate shuttle on
                                  the metabolic response to myocardial
                                  ischemia . . . . . . . . . . . . . . . . 466--475
   Cristian Robert Munteanu and   
Humberto González-Díaz and   
  Alexandre L. Magalhães   Enzymes/non-enzymes classification model
                                  complexity based on composition,
                                  sequence, 3D and topological indices . . 476--482
                Vijay Pappu and   
               Sai K. Doddi and   
               Prosenjit Bagchi   A computational study of leukocyte
                                  adhesion and its effect on flow pattern
                                  in microvessels  . . . . . . . . . . . . 483--498
             Stefano Merler and   
              Piero Poletti and   
               Marco Ajelli and   
              Bruno Caprile and   
                 Piero Manfredi   Coinfection can trigger multiple
                                  pandemic waves . . . . . . . . . . . . . 499--507
            Catherine Kelly and   
           Kieran Smallbone and   
                  Michael Brady   Tumour glycolysis: The many faces of HIF 508--513
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 197--514 (21 September 2008) . . . ??

Journal of Theoretical Biology
Volume 254, Number 3, October 7, 2008

            Dumitru Popescu and   
           Alin Gabriel Popescu   The working of a pulsatory liposome  . . 515--519
                Irene Ament and   
               Stefan Scheu and   
                Barbara Drossel   Influence of spatial structure on the
                                  maintenance of sexual reproduction . . . 520--528
                   A. Bejan and   
                 S. Lorente and   
                         J. Lee   Unifying constructal theory of tree
                                  roots, canopies and forests  . . . . . . 529--540
           Marco A. Janssen and   
                  Clint Bushman   Evolution of cooperation and altruistic
                                  punishment when retaliation is possible  541--545
              R. S. Barrett and   
                G. A. Lichtwark   Effect of altering neural, muscular and
                                  tendinous factors associated with aging
                                  on balance recovery using the ankle
                                  strategy: a simulation study . . . . . . 546--554
          Marija Rosandi\'c and   
            Matko Glunci\'c and   
              Vladimir Paar and   
                     Ivan Basar   The role of alphoid higher order repeats
                                  (HORs) in the centromere folding . . . . 555--560
               Codina Cotar and   
           John M. McNamara and   
              E. J. Collins and   
            Alasdair I. Houston   Should females prefer to mate with
                                  low-quality males? . . . . . . . . . . . 561--567
                F. Di Patti and   
                 D. Fanelli and   
             R. S. Pedersen and   
                C. Giuliani and   
                  F. Torricelli   Modelling the pharmacokinetics of
                                  tramadol: On the difference between
                                  CYP2D6 extensive and poor metabolizers   568--574
         Piotr H. Pawlowski and   
          Beata Burzy\'nska and   
            Piotr Zielenkiewicz   Theoretical model of thalassemic
                                  erythrocyte shape transformation . . . . 575--579
              S. C. Nicolis and   
                E. Despland and   
                   A. Dussutour   Collective decision-making and
                                  behavioral polymorphism in group living
                                  organisms  . . . . . . . . . . . . . . . 580--586
           Lev V. Nedorezov and   
      Bernhard L. Löhr and   
             Dinara L. Sadykova   Assessing the importance of
                                  self-regulating mechanisms in
                                  diamondback moth population dynamics:
                                  Application of discrete mathematical
                                  models . . . . . . . . . . . . . . . . . 587--593
                Steven Bodovitz   The neural correlate of consciousness    594--598
             Simon Thornley and   
               Chris Bullen and   
                   Mick Roberts   Hepatitis B in a high prevalence New
                                  Zealand population: a mathematical model
                                  applied to infection control policy  . . 599--603
           Daniel K. Riskin and   
            David J. Willis and   
José Iriarte-D\'ìaz and   
           Tyson L. Hedrick and   
         Mykhaylo Kostandov and   
                  Jian Chen and   
           David H. Laidlaw and   
          Kenneth S. Breuer and   
               Sharon M. Swartz   Quantifying the complexity of bat wing
                                  kinematics . . . . . . . . . . . . . . . 604--615
             Immanuel Bomze and   
          Christina Pawlowitsch   One-third rules with equality:
                                  Second-order evolutionary stability
                                  conditions in finite populations . . . . 616--620
                N. H. Ogden and   
           M. Bigras-Poulin and   
        K. Hanincová and   
                 A. Maarouf and   
          C. J. O'Callaghan and   
                  K. Kurtenbach   Projected effects of climate change on
                                  tick phenology and fitness of pathogens
                                  transmitted by the North American tick
                                  Ixodes scapularis  . . . . . . . . . . . 621--632
                C. P. Bhunu and   
                  W. Garira and   
             Z. Mukandavire and   
                  G. Magombedze   Modelling the effects of pre-exposure
                                  and post-exposure vaccines in
                                  tuberculosis control . . . . . . . . . . 633--649
                Eric S. Dickson   Expected utility violations evolve under
                                  status-based selection mechanisms  . . . 650--654
                  Taro Ueno and   
                   Naoki Masuda   Controlling nosocomial infection based
                                  on structure of hospital social networks 655--666
                     J. J. Bull   The optimal burst of mutation to create
                                  a phenotype  . . . . . . . . . . . . . . 667--673
        Elizabeth M. Cherry and   
                Steven J. Evans   Properties of two human atrial cell
                                  models in tissue: Restitution, memory,
                                  propagation, and reentry . . . . . . . . 674--690
                  Xuan Xiao and   
                    Pu Wang and   
                  Kuo-Chen Chou   Predicting protein structural classes
                                  with pseudo amino acid composition: An
                                  approach using geometric moments of
                                  cellular automaton image . . . . . . . . 691--696
             Michele Caputo and   
                 Cesare Cametti   Diffusion with memory in two cases of
                                  biological interest  . . . . . . . . . . 697--703
   J. Martínez-Reina and   
  J. M. García-Aznar and   
        J. Domínguez and   
              M. Doblaré   On the role of bone damage in calcium
                                  homeostasis  . . . . . . . . . . . . . . 704--712
           Morten Overgaard and   
          Kristian Sandberg and   
                    Mads Jensen   The neural correlate of consciousness?   713--715
               William H. James   Women's age, weight, parity and
                                  offspring sex ratio: a comment on the
                                  paper of Helle . . . . . . . . . . . . . 716--716
             Hanna Isaksson and   
  Corrinus C. van Donkelaar and   
                Rik Huiskes and   
                      Keita Ito   Corrigendum to ``A mechano-regulatory
                                  bone-healing model incorporating
                                  cell-phenotype specific activity'': [J.
                                  Theor. Biol. \bf 252 (2008) 230--246]    717--717
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 515--718 (7 October 2008)  . . . . ??

Journal of Theoretical Biology
Volume 254, Number 4, October 21, 2008

                   Burton Simon   A stochastic model of evolutionary
                                  dynamics with deterministic
                                  large-population asymptotics . . . . . . 719--730
        Edmund Christiansen and   
               Andrew Swann and   
 Thorkild I. A. Sòrensen   Feedback models allowing estimation of
                                  thresholds for self-promoting body
                                  weight gain  . . . . . . . . . . . . . . 731--736
          Daniel J. C. Kronauer   Genomic imprinting and kinship in the
                                  social Hymenoptera: What are the
                                  predictions? . . . . . . . . . . . . . . 737--740
                T. Carletti and   
                   R. Serra and   
                    I. Poli and   
                 M. Villani and   
                   A. Filisetti   Sufficient conditions for emergent
                                  synchronization in protocell models  . . 741--751
                   Jie Feng and   
                 Tian-ming Wang   Characterization of protein primary
                                  sequences based on partial ordering  . . 752--755
           Mark A. Changizi and   
               Shinsuke Shimojo   ``X-ray vision'' and the evolution of
                                  forward-facing eyes  . . . . . . . . . . 756--767
               Alexander Feigel   Essential conditions for evolution of
                                  communication within a species . . . . . 768--774
   Cristian Robert Munteanu and   
Humberto González-Díaz and   
            Fernanda Borges and   
Alexandre Lopes de Magalhães   Natural/random protein classification
                                  models based on star network topological
                                  indices  . . . . . . . . . . . . . . . . 775--783
             Hiroshi Momiji and   
            Nicholas A. M. Monk   Dissecting the dynamics of the Hes1
                                  genetic oscillator . . . . . . . . . . . 784--798
           Alla Bulashevska and   
                    Roland Eils   Using Bayesian multinomial classifier to
                                  predict whether a given protein sequence
                                  is intrinsically disordered  . . . . . . 799--803
  Daniel A. M. M. Silvestre and   
       José F. Fontanari   The information capacity of hypercycles  804--806
            Zoran Nikoloski and   
              Sergio Grimbs and   
                Patrick May and   
                 Joachim Selbig   Metabolic networks are NP-hard to
                                  reconstruct  . . . . . . . . . . . . . . 807--816
        Mohammad Ali Rezaei and   
         Parviz Abdolmaleki and   
               Zahra Karami and   
Ebrahim Barzegari Asadabadi and   
     Mohammad Amin Sherafat and   
  Hamid Abrishami-Moghaddam and   
            Marziyeh Fadaie and   
           Mohammad Forouzanfar   Prediction of membrane protein types by
                                  means of wavelet analysis and cascaded
                                  neural networks  . . . . . . . . . . . . 817--820
                Paul S. Agutter   The flux-summation theorem and the
                                  `evolution of dominance' . . . . . . . . 821--825
              Jeffrey C. Schank   The development of locomotor kinematics
                                  in neonatal rats: An agent-based
                                  modeling analysis in group and
                                  individual contexts  . . . . . . . . . . 826--842
             Josef Hofbauer and   
             Simon M. Huttegger   Feasibility of communication in binary
                                  signaling games  . . . . . . . . . . . . 843--849
                  Ivan Mura and   
     Attila Csikász-Nagy   Stochastic Petri Net extension of a
                                  yeast cell cycle model . . . . . . . . . 850--860
           Veena Nukoolkarn and   
     Vannajan Sanghiran Lee and   
          Maturos Malaisree and   
      Ornjira Aruksakulwong and   
               Supot Hannongbua   Molecular dynamic simulations analysis
                                  of ritronavir and lopinavir as SARS-CoV
                                  3CL pro inhibitors . . . . . . . . . . . 861--867
                Soyoka Muko and   
                      Yoh Iwasa   Erratum to ``Spatial heterogeneity of
                                  mortality and temporal fluctuation in
                                  fertility promote coexistence but not
                                  vice versa: a random-community
                                  approach'' [J. Theor. Biol. \bf 253
                                  (2008) 593--600] . . . . . . . . . . . . 868--868
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 719--868 (21 October 2008) . . . . ??


Journal of Theoretical Biology
Volume 255, Number 1, November 7, 2008

           Manoj Srinivasan and   
                  Philip Holmes   How well can spring-mass-like
                                  telescoping leg models fit multi-pedal
                                  sagittal-plane locomotion data?  . . . . 1--7
          Jaroslav Kubrycht and   
                   Karel Sigler   Length of the hypermutation motif
                                  DGYW/WRCH in the focus of statistical
                                  limits. Implications for a double-motif
                                  or extended motif recognition models . . 8--15
         Geoffrey R. Hosack and   
      Philippe A. Rossignol and   
           P. van den Driessche   The control of vector-borne disease
                                  epidemics  . . . . . . . . . . . . . . . 16--25
             Hanna Isaksson and   
  Corrinus C. van Donkelaar and   
                Rik Huiskes and   
                  Jiang Yao and   
                      Keita Ito   Determining the most important cellular
                                  characteristics for fracture healing
                                  using design of experiments methods  . . 26--39
              D. Napoletani and   
                   T. Sauer and   
              D. C. Struppa and   
               E. Petricoin and   
                      L. Liotta   Augmented sparse reconstruction of
                                  protein signaling networks . . . . . . . 40--52
            Jacques M. Bahi and   
            Christian J. Michel   A stochastic model of gene evolution
                                  with chaotic mutations . . . . . . . . . 53--63
                Steven A. Frank   Evolutionary dynamics of redundant
                                  regulatory control . . . . . . . . . . . 64--68
       Dobromir T. Dimitrov and   
           Thomas G. Hallam and   
       Charles E. Rupprecht and   
              Gary F. McCracken   Adaptive modeling of viral diseases in
                                  bats with a focus on rabies  . . . . . . 69--80
                 Mark Broom and   
            Roger M. Luther and   
           Graeme D. Ruxton and   
             Jan Rychtár   A game-theoretic model of
                                  kleptoparasitic behavior in polymorphic
                                  populations  . . . . . . . . . . . . . . 81--91
                 P. Tracqui and   
                  J. Ohayon and   
                      T. Boudou   Theoretical analysis of the adaptive
                                  contractile behaviour of a single
                                  cardiomyocyte cultured on elastic
                                  substrates with varying stiffness  . . . 92--105
           Kieran Smallbone and   
          Robert A. Gatenby and   
                Philip K. Maini   Mathematical modelling of tumour acidity 106--112
            Mina Jahandideh and   
Seyyed Mohsen Hosseini Barkooie and   
           Samad Jahandideh and   
         Parviz Abdolmaleki and   
    Mohammad Mehdi Movahedi and   
           Somayyeh Hoseini and   
Ebrahim Barzegari Asadabadi and   
       Fatemeh Javani Jouni and   
               Zahra Karami and   
      Nader Hodjati Firoozabadi   Elucidating the protein cold-adaptation:
                                  Investigation of the parameters
                                  enhancing protein psychrophilicity . . . 113--118
      Dávid Csercsik and   
          Katalin M. Hangos and   
            György M. Nagy   A simple reaction kinetic model of rapid
                                  (G protein dependent) and slow ($ \beta
                                  $-Arrestin dependent) transmission . . . 119--128
                   Jinya Otsuka   A theoretical approach to the
                                  large-scale evolution of
                                  multicellularity and cell
                                  differentiation  . . . . . . . . . . . . 129--136
    Véronique Ladret and   
                  Sabin Lessard   Evolutionary game dynamics in a finite
                                  asymmetric two-deme population and
                                  emergence of cooperation . . . . . . . . 137--151
                Manojit Roy and   
              Karin Harding and   
                 Robert D. Holt   Generalizing Levins metapopulation model
                                  in explicit space: Models of
                                  intermediate complexity  . . . . . . . . 152--161
    Revathi Ananthakrishnan and   
                Jochen Guck and   
              Falk Wottawah and   
         Stefan Schinkinger and   
              Bryan Lincoln and   
              Maren Romeyke and   
                  Tess Moon and   
                 Josef Käs   Corrigendum to ``Quantifying the
                                  contribution of actin networks to the
                                  elastic strength of fibroblasts'' [J.
                                  Theor. Biol. \bf 242 (2006) 502--516]    162--162
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--162 (7 November 2008) . . . . . ??

Journal of Theoretical Biology
Volume 255, Number 2, November 21, 2008

                  Zaiyi Guo and   
          Peter M. A. Sloot and   
                   Joc Cing Tay   A hybrid agent-based approach for
                                  modeling microbiological systems . . . . 163--175
                  Olaf Till and   
             Tobias Siebert and   
             Christian Rode and   
              Reinhard Blickhan   Characterization of isovelocity
                                  extension of activated muscle: a
                                  Hill-type model for eccentric
                                  contractions and a method for parameter
                                  determination  . . . . . . . . . . . . . 176--187
                  N. Kurochkina   Specific sequence combinations at
                                  parallel and antiparallel helix-helix
                                  interfaces . . . . . . . . . . . . . . . 188--198
               William H. James   The variations of human sex ratio at
                                  birth with time of conception within the
                                  cycle, coital rate around the time of
                                  conception, duration of time taken to
                                  achieve conception, and duration of
                                  gestation: a synthesis . . . . . . . . . 199--204
                 Chunbo Lou and   
                Zhengyan Li and   
                      Qi Ouyang   A molecular model for persister in
                                  \bionameE. coli  . . . . . . . . . . . . 205--209
               Gitit Shahaf and   
              Micha\l Barak and   
          Neta S. Zuckerman and   
            Naamah Swerdlin and   
              Malka Gorfine and   
                     Ramit Mehr   Antigen-driven selection in germinal
                                  centers as reflected by the shape
                                  characteristics of immunoglobulin gene
                                  lineage trees: a large-scale simulation
                                  study  . . . . . . . . . . . . . . . . . 210--222
             Eugene M. G. Milne   The natural distribution of survival . . 223--236
             Emily R. Stirk and   
 Carmen Molina-París and   
           Hugo A. van den Berg   Stochastic niche structure and diversity
                                  maintenance in the T cell repertoire . . 237--249
        Elva J. H. Robinson and   
     Francis L. W. Ratnieks and   
                    M. Holcombe   An agent-based model to investigate the
                                  roles of attractive and repellent
                                  pheromones in ant decision making during
                                  foraging . . . . . . . . . . . . . . . . 250--258
                Honda Naoki and   
            Yuichi Sakumura and   
                     Shin Ishii   Stochastic control of spontaneous signal
                                  generation for gradient sensing in
                                  chemotaxis . . . . . . . . . . . . . . . 259--266
                    Ralf Schmid   Pitfalls of using out of date databases.
                                  Comment on Guo et al. and Guo et al. . . 267--267
             Mark P. Little and   
               Paolo Vineis and   
                   Guangquan Li   Erratum to ``A stochastic carcinogenesis
                                  model incorporating multiple types of
                                  genomic instability fitted to colon
                                  cancer data'' [J. Theor. Biol. \bf 254
                                  (2008) 229--238] . . . . . . . . . . . . 268--268
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 163--268 (21 November 2008)  . . . ??

Journal of Theoretical Biology
Volume 255, Number 3, December 7, 2008

             Maria Davidich and   
               Stefan Bornholdt   The transition from differential
                                  equations to Boolean networks: a case
                                  study in simplifying a regulatory
                                  network model  . . . . . . . . . . . . . 269--277
 Christopher J. Brinkerhoff and   
            John R. Traynor and   
          Jennifer J. Linderman   Collision coupling, crosstalk, and
                                  compartmentalization in G-protein
                                  coupled receptor systems: Can a single
                                  model explain disparate results? . . . . 278--286
           J. M. Clearwater and   
               C. J. Rennie and   
                 P. A. Robinson   Mean field model of acetylcholine
                                  mediated dynamics in the thalamocortical
                                  system . . . . . . . . . . . . . . . . . 287--298
            Frank M. Hilker and   
                Kirsten Schmitz   Disease-induced stabilization of
                                  predator-prey oscillations . . . . . . . 299--306
             Hugo Devillers and   
         Jean Raymond Lobry and   
    Frédéric Menu   An agent-based model for predicting the
                                  prevalence of \bionameTrypanosoma cruzi
                                  I and II in their host and vector
                                  populations  . . . . . . . . . . . . . . 307--315
                Xiaofeng Ji and   
                Yuejun Wang and   
               Haiying Wang and   
                         Mi Sun   Identification of protein latent
                                  periodicities using recurrent
                                  correlation analysis . . . . . . . . . . 316--319
         Marc Bailly-Bechet and   
           Michel Kerszberg and   
     Françoise Gaill and   
             Florence Pradillon   A modeling approach of the influence of
                                  local hydrodynamic conditions on larval
                                  dispersal at hydrothermal vents  . . . . 320--331
            Paolo D'Odorico and   
             Francesco Laio and   
               Luca Ridolfi and   
               Manuel T. Lerdau   Biodiversity enhancement induced by
                                  environmental noise  . . . . . . . . . . 332--337
             Jeffrey. W. Osborn   A model of growth restraints to explain
                                  the development and evolution of tooth
                                  shapes in mammals  . . . . . . . . . . . 338--343
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 269--344 (7 December 2008) . . . . ??

Journal of Theoretical Biology
Volume 255, Number 4, December 21, 2008

Ricardo Augusto Mendonça Vieira and   
      Luis Orlindo Tedeschi and   
               Antonello Cannas   A generalized compartmental model to
                                  estimate the fibre mass in the
                                  ruminoreticulum: 1. Estimating
                                  parameters of digestion  . . . . . . . . 345--356
Ricardo Augusto Mendonça Vieira and   
      Luis Orlindo Tedeschi and   
               Antonello Cannas   A generalized compartmental model to
                                  estimate the fibre mass in the
                                  ruminoreticulum: 2. Integrating
                                  digestion and passage  . . . . . . . . . 357--368
            Matthew O'Toole and   
              Robert Latham and   
             Rehan M. Baqri and   
                 Kyle E. Miller   Modeling mitochondrial dynamics during
                                  in vivo axonal elongation  . . . . . . . 369--377
                N. Ichinose and   
                    T. Yada and   
                   O. Gotoh and   
                      K. Aihara   Reconstruction of
                                  transcription-translation dynamics with
                                  a model of gene networks . . . . . . . . 378--386
            Craig R. Powell and   
                 Alan J. McKane   Predicting the species abundance
                                  distribution using a model food web  . . 387--395
                 Alfonsas Juska   Minimal models of multi-site
                                  ligand-binding kinetics  . . . . . . . . 396--403
             Federico Rossi and   
             Sandra Ristori and   
              Mauro Rustici and   
          Nadia Marchettini and   
                    Enzo Tiezzi   Dynamics of pattern formation in
                                  biomimetic systems . . . . . . . . . . . 404--412
          A. J. K. Phillips and   
                 P. A. Robinson   Sleep deprivation in a quantitative
                                  physiologically based model of the
                                  ascending arousal system . . . . . . . . 413--423
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 345--424 (21 December 2008)  . . . ??


Journal of Theoretical Biology
Volume 256, Number 1, January 7, 2009

          Robert M. Seymour and   
                 Peter D. Sozou   Duration of courtship effort as a costly
                                  signal . . . . . . . . . . . . . . . . . 1--13
              Jason T. Noel and   
         Sergei S. Pilyugin and   
                    Atul Narang   The diffusive influx and carrier efflux
                                  have a strong effect on the bistability
                                  of the lac operon in \bionameEscherichia
                                  coli . . . . . . . . . . . . . . . . . . 14--28
           Atsuko Takamatsu and   
                 Eri Takaba and   
               Ginjiro Takizawa   Environment-dependent morphology in
                                  plasmodium of true slime mold
                                  \bionamePhysarum polycephalum and a
                                  network growth model . . . . . . . . . . 29--44
              David G. Rand and   
            Hisashi Ohtsuki and   
                Martin A. Nowak   Direct reciprocity with costly
                                  punishment: Generous tit-for-tat
                                  prevails . . . . . . . . . . . . . . . . 45--57
              Patricia Geli and   
           Mikael Andersson and   
         Åke Svensson and   
               Dan I. Andersson   A multi-type branching model with
                                  varying environment for bacterial
                                  dynamics with postantibiotic effect  . . 58--64
             Diana E. Marco and   
           Sergio A. Cannas and   
      Marcelo A. Montemurro and   
                      Bo Hu and   
                 Shi-Yuan Cheng   Comparable ecological dynamics underlie
                                  early cancer invasion and species
                                  dispersal, involving self-organizing
                                  processes  . . . . . . . . . . . . . . . 65--75
Mauricio González-Forero   Removing ambiguity from the biological
                                  species concept  . . . . . . . . . . . . 76--80
                  John A. Byers   Modeling distributions of flying
                                  insects: Effective attraction radius of
                                  pheromone in two and three dimensions    81--89
            Robert A. Laird and   
              Brandon S. Schamp   Species coexistence, intransitivity, and
                                  topological variation in competitive
                                  tournaments  . . . . . . . . . . . . . . 90--95
               E. R. Dumont and   
               I. R. Grosse and   
                   G. J. Slater   Requirements for comparing the
                                  performance of finite element models of
                                  biological structures  . . . . . . . . . 96--103
            Tatiana Lomasko and   
             Charles J. Lumsden   One-hit stochastic decline in a
                                  mechanochemical model of
                                  cytoskeleton-induced neuron death III:
                                  Diffusion pulse death zones  . . . . . . 104--116
             Andreas Handel and   
             Ira M. Longini and   
                   Rustom Antia   Antiviral resistance and the control of
                                  pandemic influenza: The roles of
                                  stochasticity, evolution and model
                                  details  . . . . . . . . . . . . . . . . 117--125
               Anmar Khadra and   
            Pere Santamaria and   
          Leah Edelstein-Keshet   The role of low avidity T cells in the
                                  protection against type 1 diabetes: a
                                  modeling investigation . . . . . . . . . 126--141
               Peter Klimek and   
             Stefan Thurner and   
                   Rudolf Hanel   Pruning the tree of life: $k$-Core
                                  percolation as selection mechanism . . . 142--146
           Samad Jahandideh and   
           Somayyeh Hoseini and   
                Mina Jahandideh   Toward more accuracy in protein
                                  structural bioinformatics: Have novel
                                  hybrid modeling procedures been born?    147--147
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--148 (7 January 2009)  . . . . . ??

Journal of Theoretical Biology
Volume 256, Number 2, January 21, 2009

        Ramana M. Pidaparti and   
        David V. Svintradze and   
              YingFeng Shan and   
                  Hiroki Yokota   Optimization of hydrogen bonds for
                                  combined DNA/collagen complex  . . . . . 149--156
Frédéric Gosselin and   
        Jean-Dominique Lebreton   Asymptotic properties of infinite Leslie
                                  matrices . . . . . . . . . . . . . . . . 157--163
         Jennifer L. Slater and   
           Kerry A. Landman and   
            Barry D. Hughes and   
                   Qin Shen and   
                   Sally Temple   Cell lineage tree models of neurogenesis 164--179
            Tracy M. Backes and   
          Russell Latterman and   
           Stephen A. Small and   
              Steven Mattis and   
                Gwyn Pauley and   
               Emily Reilly and   
               Sharon R. Lubkin   Convergent extension by intercalation
                                  without mediolaterally fixed cell motion 180--186
          Samuel M. Flaxman and   
                       Yuan Lou   Tracking prey or tracking the prey's
                                  resource? Mechanisms of movement and
                                  optimal habitat selection by predators   187--200
                M. J. Jeger and   
                P. Jeffries and   
                    Y. Elad and   
                       X.-M. Xu   A generic theoretical model for
                                  biological control of foliar plant
                                  diseases . . . . . . . . . . . . . . . . 201--214
            Cristina Benros and   
    Alexandre G. de Brevern and   
                   Serge Hazout   Analyzing the sequence-structure
                                  relationship of a library of local
                                  structural prototypes  . . . . . . . . . 215--226
             Peter McCauley and   
         Leonid V. Kalachev and   
             Amber D. Smith and   
            Gregory Belenky and   
            David F. Dinges and   
          Hans P. A. Van Dongen   A new mathematical model for the
                                  homeostatic effects of sleep loss on
                                  neurobehavioral performance  . . . . . . 227--239
        Estrella A. Sicardi and   
                  Hugo Fort and   
       Mendeli H. Vainstein and   
            Jeferson J. Arenzon   Random mobility and spatial structure
                                  often enhance cooperation  . . . . . . . 240--246
            Mareike Fischer and   
                     Mike Steel   Sequence length bounds for resolving a
                                  deep phylogenetic divergence . . . . . . 247--252
      Lambertus A. Peletier and   
                Neil Benson and   
          Piet H. van der Graaf   Impact of plasma-protein binding on
                                  receptor occupancy: An analytical
                                  description  . . . . . . . . . . . . . . 253--262
     Mike Mesterton-Gibbons and   
                Tom N. Sherratt   Neighbor intervention: a game-theoretic
                                  model  . . . . . . . . . . . . . . . . . 263--275
                 Yuehua Cui and   
                   Wenzhao Yang   Zero-inflated generalized Poisson
                                  regression mixture model for mapping
                                  quantitative trait loci underlying count
                                  trait with many zeros  . . . . . . . . . 276--285
            Jean-Baptiste Ferdy   Virulence and transmission modes in
                                  metapopulations: When group selection
                                  increases virulence  . . . . . . . . . . 286--296
           Takuya Sekiguchi and   
                Mayuko Nakamaru   Effect of the presence of empty sites on
                                  the evolution of cooperation by costly
                                  punishment in spatial games  . . . . . . 297--304
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 149--304 (21 January 2009) . . . . ??

Journal of Theoretical Biology
Volume 256, Number 3, February 7, 2009

                 G. Dattoli and   
                   C. Guiot and   
             P. P. Delsanto and   
            P. L. Ottaviani and   
                S. Pagnutti and   
                T. S. Deisboeck   Cancer metabolism and the dynamics of
                                  metastasis . . . . . . . . . . . . . . . 305--310
              Hiroshi Toyoizumi   Sample path analysis of contribution and
                                  reward in cooperative groups . . . . . . 311--314
                        Hao Zhu   Is anisotropic propagation of polarized
                                  molecular distribution the common
                                  mechanism of swirling patterns of planar
                                  cell polarization? . . . . . . . . . . . 315--325
                     Shu Ju and   
            Donald L. DeAngelis   The $ R^* $ rule and energy flux in a
                                  plant-nutrient ecosystem . . . . . . . . 326--332
               Leonid Hanin and   
          Saria S. Awadalla and   
                   Paul Cox and   
              Galina Glazko and   
                Andrei Yakovlev   Chromosome-specific spatial
                                  periodicities in gene expression
                                  revealed by spectral analysis  . . . . . 333--342
       Piers L. Cornelissen and   
     Martin J. Toveé and   
                Melissa Bateson   Patterns of subcutaneous fat deposition
                                  and the relationship between body mass
                                  index and waist-to-hip ratio:
                                  Implications for models of physical
                                  attractiveness . . . . . . . . . . . . . 343--350
         Shu-ichi Kinoshita and   
            Kazumoto Iguchi and   
              Hiroaki S. Yamada   Intrinsic properties of Boolean dynamics
                                  in complex networks  . . . . . . . . . . 351--369
          T. Alméras and   
                    M. Fournier   Biomechanical design and long-term
                                  stability of trees: Morphological and
                                  wood traits involved in the balance
                                  between weight increase and the
                                  gravitropic reaction . . . . . . . . . . 370--381
               Shingo Iwami and   
          Yasuhiro Takeuchi and   
            Kentaro Iwamoto and   
              Yoshimi Naruo and   
              Masahiro Yasukawa   A mathematical design of vector vaccine
                                  against autoimmune disease . . . . . . . 382--392
                  Eric Yang and   
          Martin L. Yarmush and   
         Ioannis P. Androulakis   Transcription factor network
                                  reconstruction using the living cell
                                  array  . . . . . . . . . . . . . . . . . 393--407
                     Tao Yu and   
                Xiaoqin Zou and   
            Sheng-You Huang and   
                    Xian-Wu Zou   Cutoff variation induces different
                                  topological properties: a new discovery
                                  of amino acid network within protein . . 408--413
          A. Wickramasuriya and   
                     J. Schmitt   Improving horizontal plane locomotion
                                  via leg angle control  . . . . . . . . . 414--427
                Ri-Bo Huang and   
                  Qi-Shi Du and   
                 Yu-Tuo Wei and   
              Zong-Wen Pang and   
                   Hang Wei and   
                  Kuo-Chen Chou   Physics and chemistry-driven artificial
                                  neural network for predicting
                                  bioactivity of peptides and proteins and
                                  their design . . . . . . . . . . . . . . 428--435
                  T. Caruso and   
                  M. Migliorini   Euclidean geometry explains why lengths
                                  allow precise body mass estimates in
                                  terrestrial invertebrates: The case of
                                  oribatid mites . . . . . . . . . . . . . 436--440
              Hong-Bin Shen and   
                  Kuo-Chen Chou   Predicting protein fold pattern with
                                  functional domain and sequential
                                  evolution information  . . . . . . . . . 441--446
                Huai-Ti Lin and   
           A. Luis Dorfmann and   
               Barry A. Trimmer   Soft-cuticle biomechanics: a
                                  constitutive model of anisotropy for
                                  caterpillar integument . . . . . . . . . 447--457
        Alcides Perez-Bello and   
   Cristian Robert Munteanu and   
        Florencio M. Ubeira and   
Alexandre Lopes De Magalhães and   
            Eugenio Uriarte and   
Humberto González-D\'ìaz   Alignment-free prediction of
                                  mycobacterial DNA promoters based on
                                  pseudo-folding lattice network or
                                  star-graph topological indices . . . . . 458--466
                     Mike Steel   A basic limitation on inferring
                                  phylogenies by pairwise sequence
                                  comparisons  . . . . . . . . . . . . . . 467--472
          Alberto d'Onofrio and   
                 Piero Manfredi   Information-related changes in contact
                                  patterns may trigger oscillations in the
                                  endemic prevalence of infectious
                                  diseases . . . . . . . . . . . . . . . . 473--478
                 Marco Archetti   Decoupling vigour and quality in the
                                  autumn colours game: Weak individuals
                                  can signal, cheating can pay . . . . . . 479--484
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 305--484 (7 February 2009) . . . . ??

Journal of Theoretical Biology
Volume 256, Number 4, February 21, 2009

                     Jinzhi Lei   Stochasticity in single gene expression
                                  with both intrinsic noise and
                                  fluctuation in kinetic parameters  . . . 485--492
             Pauline Ezanno and   
               Matthieu Lesnoff   A metapopulation model for the spread
                                  and persistence of contagious bovine
                                  pleuropneumonia (CBPP) in African
                                  sedentary mixed crop-livestock systems   493--503
             M. D. Harrison and   
                       M. Broom   A game-theoretic model of interspecific
                                  brood parasitism with sequential
                                  decisions  . . . . . . . . . . . . . . . 504--517
               Michael Beil and   
        Sebastian Lück and   
            Frank Fleischer and   
    Stéphanie Portet and   
            Wolfgang Arendt and   
                 Volker Schmidt   Simulating the formation of keratin
                                  filament networks by a
                                  piecewise-deterministic Markov process   518--532
        Robert J. Whittaker and   
              Richard Booth and   
             Rosemary Dyson and   
               Clare Bailey and   
       Louise Parsons Chini and   
             Shailesh Naire and   
             Sevil Payvandi and   
                 Zimei Rong and   
            Hannah Woollard and   
          Linda J. Cummings and   
            Sarah L. Waters and   
               Lina Mawasse and   
        Julian B. Chaudhuri and   
          Marianne J. Ellis and   
              Vipin Michael and   
           Nicola J. Kuiper and   
                 Sarah Cartmell   Mathematical modelling of fibre-enhanced
                                  perfusion inside a tissue-engineering
                                  bioreactor . . . . . . . . . . . . . . . 533--546
Krisztina Szalisznyó and   
László Müller   Dopamine induced switch in the
                                  subthreshold dynamics of the striatal
                                  cholinergic interneurons: a numerical
                                  study  . . . . . . . . . . . . . . . . . 547--560
         Emmanuel N. Abatih and   
                  Lis Alban and   
  Annette K. Ersbòll and   
           Danilo M. Lo Fo Wong   Impact of antimicrobial usage on the
                                  transmission dynamics of antimicrobial
                                  resistant bacteria among pigs  . . . . . 561--573
              A. Y. Kletter and   
          J. von Hardenberg and   
                   E. Meron and   
                  A. Provenzale   Patterned vegetation and rainfall
                                  intermittency  . . . . . . . . . . . . . 574--583
                  M. Pietruszka   General proof of the validity of a new
                                  tensor equation of plant growth  . . . . 584--585
            Michael Manapat and   
            Hisashi Ohtsuki and   
       Reinhard Bürger and   
                Martin A. Nowak   Originator dynamics  . . . . . . . . . . 586--595
               Jin Seob Kim and   
                    Sean X. Sun   Continuum modeling of forces in growing
                                  viscoelastic cytoskeletal networks . . . 596--606
             Kasper Peeters and   
                  Anne Taormina   Group theory of icosahedral virus capsid
                                  vibrations: a top-down approach  . . . . 607--624
              Jian-Ding Qiu and   
                San-Hua Luo and   
             Jian-Hua Huang and   
                  Ru-Ping Liang   Using support vector machines to
                                  distinguish enzymes: Approached by
                                  incorporating wavelet transform  . . . . 625--631
                Ludvik Bass and   
            Susanne Keiding and   
                    Ole L. Munk   Benefits and risks of transforming data
                                  from dynamic positron emission
                                  tomography, with an application to
                                  hepatic encephalopathy . . . . . . . . . 632--636
                    Ting Ji and   
                 Boyu Zhang and   
                 Yuehua Sun and   
                         Yi Tao   Evolutionary dynamics of fearfulness and
                                  boldness . . . . . . . . . . . . . . . . 637--643
             Chie Katsuyama and   
             Shinji Nakaoka and   
          Yasuhiro Takeuchi and   
                Kanako Tago and   
           Masahito Hayatsu and   
                     Kenji Kato   Complementary cooperation between two
                                  syntrophic bacteria in pesticide
                                  degradation  . . . . . . . . . . . . . . 644--654
             Andreas Handel and   
             Elisa Margolis and   
                 Bruce R. Levin   Exploring the role of the immune
                                  response in preventing antibiotic
                                  resistance . . . . . . . . . . . . . . . 655--662
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 485--662 (21 February 2009)  . . . ??


Journal of Theoretical Biology
Volume 257, Number 1, March 7, 2009

            Mayuko Nakamaru and   
                  Ulf Dieckmann   Runaway selection for cooperation and
                                  strict-and-severe punishment . . . . . . 1--8
           Alan S. Perelson and   
             Frederik W. Wiegel   Scaling aspects of lymphocyte
                                  trafficking  . . . . . . . . . . . . . . 9--16
             D. N. Georgiou and   
          T. E. Karakasidis and   
                J. J. Nieto and   
                      A. Torres   Use of fuzzy clustering technique and
                                  matrices to classify amino acids and its
                                  impact to Chou's pseudo amino acid
                                  composition  . . . . . . . . . . . . . . 17--26
            Catherine Foley and   
              Michael C. Mackey   Mathematical model for G-CSF
                                  administration after chemotherapy  . . . 27--44
            József Garay   Cooperation in defence against a
                                  predator . . . . . . . . . . . . . . . . 45--51
Sebastián Risau-Gusman and   
       Damián H. Zanette   Contact switching as a control strategy
                                  for epidemic outbreaks . . . . . . . . . 52--60
            Olena Riabinina and   
          Andrew O. Philippides   A model of visual detection of angular
                                  speed for bees . . . . . . . . . . . . . 61--72
               Martin Kroon and   
           Gerhard A. Holzapfel   A theoretical model for
                                  fibroblast-controlled growth of saccular
                                  cerebral aneurysms . . . . . . . . . . . 73--83
                      J. Apaloo   Evolutionary matrix games and
                                  optimization theory  . . . . . . . . . . 84--89
           Rafael D. Vilela and   
               Benjamin Lindner   Are the input parameters of white noise
                                  driven integrate and fire neurons
                                  uniquely determined by rate and CV?  . . 90--99
                  Daniel Nettle   An evolutionary model of low mood states 100--103
         Duncan N. L. Menge and   
                Joshua S. Weitz   Dangerous nutrients: Evolution of
                                  phytoplankton resource uptake subject to
                                  virus attack . . . . . . . . . . . . . . 104--115
               William H. James   The variations of human sex ratio at
                                  birth during and after wars, and their
                                  potential explanations . . . . . . . . . 116--123
             Michael Halter and   
            John T. Elliott and   
          Joseph B. Hubbard and   
            Alessandro Tona and   
                  Anne L. Plant   Cell volume distributions reveal cell
                                  growth rates and division times  . . . . 124--130
             David C. Wedge and   
               William Rowe and   
            Douglas B. Kell and   
                 Joshua Knowles   In silico modelling of directed
                                  evolution: Implications for experimental
                                  design and stepwise evolution  . . . . . 131--141
           Ryan A. Chisholm and   
                  Elise Filotas   Critical slowing down as an indicator of
                                  transitions in two-species models  . . . 142--149
            Hans-Rolf Gregorius   Relational diversity . . . . . . . . . . 150--158
                       Jie Yang   Molecular modeling of human BAD and its
                                  interaction with PKAc or PP1c  . . . . . 159--169
            Craig R. Powell and   
              Richard P. Boland   The effects of stochastic population
                                  dynamics on food web structure . . . . . 170--180
               Shingo Iwami and   
          Yasuhiro Takeuchi and   
                   Xianning Liu   Avian flu pandemic: Can we prevent it?   181--190
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--190 (7 March 2009)  . . . . . . ??

Journal of Theoretical Biology
Volume 257, Number 2, March 21, 2009

             Makoto Okamoto and   
             Shigeru Sunada and   
               Hiroshi Tokutake   Stability analysis of gliding flight of
                                  a swallowtail butterfly Papilio xuthus   191--202
          Roberto Ambrosini and   
  Anders Pape Mòller and   
                   Nicola Saino   A quantitative measure of migratory
                                  connectivity . . . . . . . . . . . . . . 203--211
              David Fouchet and   
           Jacques Le Pendu and   
Jean-Sébastien Guitton and   
         Micheline Guiserix and   
Stéphane Marchandeau and   
              Dominique Pontier   Evolution of microparasites in spatially
                                  and genetically structured host
                                  populations: The example of RHDV
                                  infecting rabbits  . . . . . . . . . . . 212--227
               E. \`E. Saftenku   Computational study of non-homogeneous
                                  distribution of Ca$^{2+}$ handling
                                  systems in cerebellar granule cells  . . 228--244
                      D. Waxman   Fixation at a locus with multiple
                                  alleles: Structure and solution of the
                                  Wright Fisher model  . . . . . . . . . . 245--251
             Alain Rapaport and   
              Denis Dochain and   
    Jérôme Harmand   Long run coexistence in the chemostat
                                  with multiple species  . . . . . . . . . 252--259
         Dusan Lazár and   
   Jirí Jablonský   On the approaches applied in formulation
                                  of a kinetic model of photosystem II:
                                  Different approaches lead to different
                                  simulations of the chlorophyll a
                                  fluorescence transients  . . . . . . . . 260--269
                 Zhong Zhao and   
                    Lansun Chen   Dynamic analysis of lactic acid
                                  fermentation in membrane bioreactor  . . 270--278
              Henggui Zhang and   
                    Tao Tao and   
             Sanjay Kharche and   
              Simon M. Harrison   Modelling changes in transmural
                                  propagation and susceptibility to
                                  arrhythmia induced by volatile
                                  anaesthetics in ventricular tissue . . . 279--291
             Helen C. Monro and   
              Eamonn A. Gaffney   Modelling chemotherapy resistance in
                                  palliation and failed cure . . . . . . . 292--302
   Cristian Robert Munteanu and   
Alexandre L. Magalhães and   
            Eugenio Uriarte and   
Humberto González-Díaz   Multi-target QPDR classification model
                                  for human breast and colon
                                  cancer-related proteins using star graph
                                  topological indices  . . . . . . . . . . 303--311
                 Junghyo Jo and   
             Moo Young Choi and   
                     Duk-Su Koh   Beneficial effects of intercellular
                                  interactions between pancreatic islet
                                  cells in blood glucose regulation  . . . 312--319
              Roland Kaunas and   
                     Hui-Ju Hsu   A kinematic model of stretch-induced
                                  stress fiber turnover and reorientation  320--330
                Robert Boyd and   
             Peter J. Richerson   Voting with your feet: Payoff biased
                                  migration and the evolution of group
                                  beneficial behavior  . . . . . . . . . . 331--339
                Tibor Antal and   
            Martin A. Nowak and   
                  Arne Traulsen   Strategy abundance in 2$ \times $2 games
                                  for arbitrary mutation rates . . . . . . 340--344
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 191--344 (21 March 2009) . . . . . ??

Journal of Theoretical Biology
Volume 257, Number 3, April 7, 2009

                 Peter R. Wills   Informed Generation: Physical origin and
                                  biological evolution of genetic
                                  codescript interpreters  . . . . . . . . 345--358
              Anna Grosberg and   
                 Morteza Gharib   Computational models of heart pumping
                                  efficiencies based on contraction waves
                                  in spiral elastic bands  . . . . . . . . 359--370
              M. J. Tindall and   
            J. A. D. Wattis and   
             B. J. O'Malley and   
             L. Pickersgill and   
                  K. G. Jackson   A continuum receptor model of hepatic
                                  lipoprotein metabolism . . . . . . . . . 371--384
              Koichiro Uriu and   
        Yoshihiro Morishita and   
                      Yoh Iwasa   Traveling wave formation in vertebrate
                                  segmentation . . . . . . . . . . . . . . 385--396
        István Scheuring   Evolution of generous cooperative norms
                                  by cultural group selection  . . . . . . 397--407
      Thomas O. Svennungsen and   
               Éva Kisdi   Evolutionary branching of virulence in a
                                  single-infection model . . . . . . . . . 408--418
              Dominique Chu and   
         Nicolae Radu Zabet and   
                Boris Mitavskiy   Models of transcription factor binding:
                                  Sensitivity of activation functions to
                                  model assumptions  . . . . . . . . . . . 419--429
         Cassie S. Mitchell and   
                  Robert H. Lee   A quantitative examination of the role
                                  of cargo-exerted forces in axonal
                                  transport  . . . . . . . . . . . . . . . 430--437
              Elsje Pienaar and   
           Scott E. Whitney and   
         Hendrik J. Viljoen and   
    Nicolaas F. J. van Rensburg   A model of the complex response of
                                  Staphylococcus aureus to methicillin . . 438--445
         Femke van den Berg and   
            Frank van den Bosch   The presence of generalist plant
                                  pathogens might not explain the
                                  long-term coexistence of plant species   446--453
          Jerrome K. Percus and   
              Ora E. Percus and   
              Michele Di Mascio   The amplitudes of viral blips in HIV-1
                                  infected patients treated with
                                  antiretroviral therapy are power-law
                                  distributed  . . . . . . . . . . . . . . 454--459
                   Elan Gin and   
              Martin Falcke and   
            Larry E. Wagner and   
              David I. Yule and   
                    James Sneyd   Markov chain Monte Carlo fitting of
                                  single-channel data from inositol
                                  trisphosphate receptors  . . . . . . . . 460--474
          Ralph A. Catalano and   
           Katherine Saxton and   
               Tim Bruckner and   
              Sidra Goldman and   
             Elizabeth Anderson   A sex-specific test of selection in
                                  utero  . . . . . . . . . . . . . . . . . 475--479
               Adriana T. Dawes   A mathematical model of $ \alpha
                                  $-catenin dimerization at adherens
                                  junctions in polarized epithelial cells  480--488
              Matteo Mossio and   
             Giuseppe Longo and   
                   John Stewart   A computable expression of closure to
                                  efficient causation  . . . . . . . . . . 489--498
                     Rui Xu and   
                       Zhien Ma   An HBV model with diffusion and time
                                  delay  . . . . . . . . . . . . . . . . . 499--509
              Rampal S. Etienne   Maximum likelihood estimation of neutral
                                  model parameters for multiple samples
                                  with different degrees of dispersal
                                  limitation . . . . . . . . . . . . . . . 510--514
                Gary C. Packard   On the use of logarithmic
                                  transformations in allometric analyses   515--518
         Andrew J. Kerkhoff and   
               Brian J. Enquist   Multiplicative by nature: Why
                                  logarithmic transformation is necessary
                                  in allometry . . . . . . . . . . . . . . 519--521
                  H. C. Howland   Orbital orientation is not visual
                                  orientation: a comment on ``X-ray Vision
                                  and the evolution of forward-facing
                                  eyes'' by M. A. Changizi and S. Shimojo  522--523
              Mark Changizi and   
               Shinsuke Shimojo   Response to H. C. Howland, ``Orbital
                                  orientation is not visual orientation''  524--525
             Piotr H. Pawlowski   Corrigendum to ``Mechanokinetic model of
                                  cell membrane: Theoretical analysis of
                                  plasmalemma homeostasis, growth and
                                  division'': [J. Theor. Biol. \bf 249
                                  (2007) 67--76] . . . . . . . . . . . . . 526--526
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 345--526 (7 April 2009)  . . . . . ??

Journal of Theoretical Biology
Volume 257, Number 4, April 21, 2009

                  J. W. Kim and   
              J. A. Roberts and   
                 P. A. Robinson   Dynamics of epileptic seizures:
                                  Evolution, spreading, and suppression    527--532
             Deborah Cromer and   
             Jaroslav Stark and   
             Miles P. Davenport   Low red cell production may protect
                                  against severe anemia during a malaria
                                  infection --- Insights from modeling . . 533--542
                    D. J. Irons   Logical analysis of the budding yeast
                                  cell cycle . . . . . . . . . . . . . . . 543--559
              Xiaoning Qian and   
            Edward R. Dougherty   On the long-run sensitivity of
                                  probabilistic Boolean networks . . . . . 560--577
             Ludger Rensing and   
                    Peter Ruoff   How can yeast cells decide between three
                                  activated MAP kinase pathways? A model
                                  approach . . . . . . . . . . . . . . . . 578--587
       Sergey A. Marakushev and   
            Ol'ga V. Belonogova   The parageneses thermodynamic analysis
                                  of chemoautotrophic CO 2 fixation
                                  archaic cycle components, their
                                  stability and self-organization in
                                  hydrothermal systems . . . . . . . . . . 588--597
                C. J. Evans and   
             R. M. Phillips and   
                P. F. Jones and   
              P. M. Loadman and   
              B. D. Sleeman and   
              C. J. Twelves and   
                     S. W. Smye   A mathematical model of doxorubicin
                                  penetration through multicellular layers 598--608
            Casey G. Rothschild   The evolution of reciprocity in sizable
                                  human groups . . . . . . . . . . . . . . 609--617
               Jian-Yi Yang and   
             Zhen-Ling Peng and   
                  Zu-Guo Yu and   
              Rui-Jie Zhang and   
                     Vo Anh and   
                   Desheng Wang   Prediction of protein structural classes
                                  by recurrence quantification analysis
                                  based on chaos game representation . . . 618--626
           Yoshinari Tanaka and   
               Masafumi Yoshino   Predicting the phenotypic response of
                                  resource-competing communities to
                                  environmental change . . . . . . . . . . 627--641
           S. J. van Albada and   
                 P. A. Robinson   Mean-field modeling of the basal
                                  ganglia-thalamocortical system. I:
                                  Firing rates in healthy and Parkinsonian
                                  states . . . . . . . . . . . . . . . . . 642--663
           S. J. van Albada and   
                 R. T. Gray and   
             P. M. Drysdale and   
                 P. A. Robinson   Mean-field modeling of the basal
                                  ganglia-thalamocortical system. II:
                                  Dynamics of Parkinsonian oscillations    664--688
             Benno Woelfing and   
                  Arne Traulsen   Stochastic sampling of interaction
                                  partners versus deterministic payoff
                                  assignment . . . . . . . . . . . . . . . 689--695
         Daniel John Lawson and   
         Henrik Jeldtoft Jensen   The role of weak selection and high
                                  mutation rates in nearly neutral
                                  evolution  . . . . . . . . . . . . . . . 696--703
                T. Carletti and   
                   R. Serra and   
                    I. Poli and   
                 M. Villani and   
                   A. Filisetti   Corrigendum to ``Sufficient conditions
                                  for emergent synchronization in
                                  protocell models'' [J. Theor. Biol. \bf
                                  254 (2008) 741--751] . . . . . . . . . . 704--704
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 527--704 (21 April 2009) . . . . . ??


Journal of Theoretical Biology
Volume 258, Number 1, May 7, 2009

                     A. Golubev   How could the Gompertz-Makeham law
                                  evolve . . . . . . . . . . . . . . . . . 1--17
             P. Katsaloulis and   
               T. Theoharis and   
                     A. Provata   Long range clustering of
                                  oligonucleotides containing the CG
                                  signal . . . . . . . . . . . . . . . . . 18--26
András Szilágyi and   
     Géza Meszéna   Limiting similarity and niche theory for
                                  structured populations . . . . . . . . . 27--37
           Valerie J. Grant and   
                    R. J. Irwin   A simple model for adaptive variation in
                                  the sex ratios of mammalian offspring    38--42
           Amandine Lurette and   
            Suzanne Touzeau and   
        Matieyendou Lamboni and   
             Hervé Monod   Sensitivity analysis to identify key
                                  parameters influencing Salmonella
                                  infection dynamics in a pig batch  . . . 43--52
       Ignacio Marín and   
                   Sergio Hoyas   Basic networks: Definition and
                                  applications . . . . . . . . . . . . . . 53--59
              Patrik Sahlin and   
          Bo Söderberg and   
            Henrik Jönsson   Regulated transport as a mechanism for
                                  pattern generation: Capabilities for
                                  phyllotaxis and beyond . . . . . . . . . 60--70
                  K. Sriram and   
            Sylvain Soliman and   
          François Fages   Dynamics of the interlocked positive
                                  feedback loops explaining the robust
                                  epigenetic switching in Candida albicans 71--88
 György Barabás and   
     Géza Meszéna   When the exception becomes the rule: The
                                  disappearance of limiting similarity in
                                  the Lotka--Volterra model  . . . . . . . 89--94
                 Mike Steel and   
      Laszlo Székely and   
                Elchanan Mossel   Phylogenetic information complexity: Is
                                  testing a tree easier than finding it?   95--102
       Konstantin G. Arbeev and   
            Igor Akushevich and   
     Alexander M. Kulminski and   
          Liubov S. Arbeeva and   
            Lucy Akushevich and   
    Svetlana V. Ukraintseva and   
       Irina V. Culminskaya and   
              Anatoli I. Yashin   Genetic model for longitudinal studies
                                  of aging, health, and longevity and its
                                  potential application to incomplete data 103--111
            Diana David-Rus and   
      Swagatam Mukhopadhyay and   
           Joel L. Lebowitz and   
            Anirvan M. Sengupta   Inheritance of epigenetic chromatin
                                  silencing  . . . . . . . . . . . . . . . 112--120
         Bengt O. Bengtsson and   
                  Nils Cronberg   The effective size of bryophyte
                                  populations  . . . . . . . . . . . . . . 121--126
   António Rodrigues and   
               Heinz Koeppl and   
            Hisashi Ohtsuki and   
                   Akiko Satake   A game theoretical model of
                                  deforestation in human-environment
                                  relationships  . . . . . . . . . . . . . 127--134
               G. A. Parker and   
                 M. A. Ball and   
                    J. C. Chubb   To grow or not to grow? Intermediate and
                                  paratenic hosts as helminth life cycle
                                  strategies . . . . . . . . . . . . . . . 135--147
                Thilo Gross and   
          Andrew M. Edwards and   
                  Ulrike Feudel   The invisible niche: Weakly
                                  density-dependent mortality and the
                                  coexistence of species . . . . . . . . . 148--155
             Donald R. Forsdyke   Samuel Butler and human long term
                                  memory: Is the cupboard bare?  . . . . . 156--164
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--164 (7 May 2009)  . . . . . . . ??

Journal of Theoretical Biology
Volume 258, Number 2, May 21, 2009

   Monika Joanna Piotrowska and   
                 Simon D. Angus   A quantitative cellular automaton model
                                  of in vitro multicellular spheroid
                                  tumour growth  . . . . . . . . . . . . . 165--178
                 Mike S. Fowler   Increasing community size and
                                  connectance can increase stability in
                                  competitive communities  . . . . . . . . 179--188
       Christopher B. Cowan and   
             Dhara A. Patel and   
                Theresa A. Good   Exploring the mechanism of $ \beta
                                  $-amyloid toxicity attenuation by
                                  multivalent sialic acid polymers through
                                  the use of mathematical models . . . . . 189--197
           Michael J. Jeger and   
         Laurence V. Madden and   
            Frank van den Bosch   The effect of transmission route on
                                  plant virus epidemic development and
                                  disease control  . . . . . . . . . . . . 198--207
           Roberto da Silva and   
      Gustavo A. Kellermann and   
                   Luis C. Lamb   Statistical fluctuations in population
                                  bargaining in the ultimatum game: Static
                                  and evolutionary aspects . . . . . . . . 208--218
            Gerson Florence and   
           Markus A. Dahlem and   
Antônio-Carlos G. Almeida and   
  José W. M. Bassani and   
             Jürgen Kurths   The role of extracellular potassium
                                  dynamics in the different stages of
                                  ictal bursting and spreading depression:
                                  a computational study  . . . . . . . . . 219--228
                Anas M. Ababneh   The role of polarization interactions in
                                  the wrapping/unwrapping of nucleosomal
                                  DNA around the histone octamer:
                                  Implications to gene regulation  . . . . 229--239
                 Yanni Xiao and   
            Roger G. Bowers and   
                     Sanyi Tang   The effect of delayed host
                                  self-regulation on host-pathogen
                                  population cycles in forest insects  . . 240--249
               John M. Marshall   The effect of gene drive on containment
                                  of transgenic mosquitoes . . . . . . . . 250--265
               Shu-Yan Chen and   
                     Jin Xu and   
        Fernando T. Maestre and   
              Cheng-Jin Chu and   
                  Gang Wang and   
                        Sa Xiao   Beyond dual-lattice models:
                                  Incorporating plant strategies when
                                  modeling the interplay between
                                  facilitation and competition along
                                  environmental severity gradients . . . . 266--273
              Omri Allouche and   
                   Ronen Kadmon   Demographic analysis of Hubbell's
                                  neutral theory of biodiversity . . . . . 274--280
               Tatsuya Uezu and   
               Sae Kakutani and   
               Mika Yoshida and   
             Akino Nakajima and   
               Takeshi Asao and   
                Yoshiomi Takagi   Novel features of computer-simulated
                                  clonal life of Paramecium caudatum . . . 281--288
              Xiaojian Shao and   
               Yingjie Tian and   
                 Lingyun Wu and   
                  Yong Wang and   
                  Ling Jing and   
                   Naiyang Deng   Predicting DNA- and RNA-binding proteins
                                  from sequences with kernel methods . . . 289--293
                    Xin Liu and   
                     Ya-Pu Zhao   Donut-shaped fingerprint in homologous
                                  polypeptide relationships --- a
                                  topological feature related to
                                  pathogenic structural changes in
                                  conformational disease . . . . . . . . . 294--301
               J. G. Sumner and   
                   P. D. Jarvis   Markov invariants and the isotropy
                                  subgroup of a quartet tree . . . . . . . 302--310
           Kieran Smallbone and   
           Evangelos Simeonidis   Flux balance analysis: a geometric
                                  perspective  . . . . . . . . . . . . . . 311--315
             Roland Schwarz and   
              Matthias Wolf and   
             Tobias Müller   A probabilistic model of cell size
                                  reduction in Pseudo-nitzschia
                                  delicatissima (Bacillariophyta)  . . . . 316--322
                   Naoki Masuda   Directionality of contact networks
                                  suppresses selection pressure in
                                  evolutionary dynamics  . . . . . . . . . 323--334
             A. G. Rossberg and   
                 H. Matsuda and   
                 T. Amemiya and   
                        K. Itoh   Corrigendum to ``Food webs: Experts
                                  consuming families of experts'' [J.
                                  Theor. Biol. \bf 241 (2006) 552--563]    335--335
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 165--336 (21 May 2009) . . . . . . ??

Journal of Theoretical Biology
Volume 258, Number 3, June, 2009

                Fabio A. Milner   Editorial  . . . . . . . . . . . . . . . 337--338
     Lucas Del Bianco Faria and   
 Michel Iskin da Silveira Costa   The interplay between predator's prey
                                  preference and environmental
                                  heterogeneity in food web long-term
                                  stability  . . . . . . . . . . . . . . . 339--343
               Pierre Auger and   
              Rachid Mchich and   
           Tanmay Chowdhury and   
            Gauthier Sallet and   
           Maurice Tchuente and   
           Joydev Chattopadhyay   Effects of a disease affecting a
                                  predator on the dynamics of a
                                  predator-prey system . . . . . . . . . . 344--351
          Samrat Chatterjee and   
                Marco Isaia and   
                 Ezio Venturino   Spiders as biological controllers in the
                                  agroecosystem  . . . . . . . . . . . . . 352--362
           Marjolein E. Lof and   
             Maarten de Gee and   
                    Lia Hemerik   Odor-mediated aggregation enhances the
                                  colonization ability of
                                  \bionameDrosophila melanogaster  . . . . 363--370
            M. Marvá and   
          E. Sánchez and   
       R. Bravo de la Parra and   
                        L. Sanz   Reduction of slow-fast discrete models
                                  coupling migration and demography  . . . 371--379
              Elise Billoir and   
Aloysio da Silva Ferrão-Filho and   
Marie Laure Delignette-Muller and   
               Sandrine Charles   DEBtox theory and matrix population
                                  models as helpful tools in understanding
                                  the interaction between toxic
                                  cyanobacteria and zooplankton  . . . . . 380--388
               Daniel Maxin and   
           Fabio Augusto Milner   The role of sexually abstained groups in
                                  two-sex demographic and epidemic
                                  logistic models with non-linear
                                  mortality  . . . . . . . . . . . . . . . 389--402
Norberto Aníbal Maidana and   
                   Hyun Mo Yang   Spatial spreading of West Nile Virus
                                  described by traveling waves . . . . . . 403--417
                 M. Rafikov and   
              L. Bevilacqua and   
                  A. P. P. Wyse   Optimal control strategy of malaria
                                  vector using genetically modified
                                  mosquitoes . . . . . . . . . . . . . . . 418--425
    Sébastien Gaucel and   
    Béatrice Laroche and   
             Pauline Ezanno and   
            Elisabeta Vergu and   
                Suzanne Touzeau   Using singular perturbations to reduce
                                  an epidemiological model: Application to
                                  bovine viral diarrhoea virus within-herd
                                  spread . . . . . . . . . . . . . . . . . 426--436
        Ivana Horová and   
     Zdenek Pospísil and   
            Jirí Zelinka   Hazard function for cancer patients and
                                  cancer cell dynamics . . . . . . . . . . 437--443
               S. Chareyron and   
                      M. Alamir   Mixed immunotherapy and chemotherapy of
                                  tumors: Feedback design and model
                                  updating schemes . . . . . . . . . . . . 444--454
          Christine Nazaret and   
              Margit Heiske and   
              Kevin Thurley and   
              Jean-Pierre Mazat   Mitochondrial energetic metabolism: a
                                  simplified model of TCA cycle with ATP
                                  production . . . . . . . . . . . . . . . 455--464
            Fabiano Ribeiro and   
                 Nestor Caticha   Emergence and loss of assortative mating
                                  in sympatric speciation  . . . . . . . . 465--477
     Miguel González and   
    Rodrigo Martínez and   
                    Manuel Mota   Bisexual branching processes to model
                                  extinction conditions for Y-linked genes 478--488
                      Anonymous   Based on the Talks at the Second
                                  Conference on Computational and
                                  Mathematical Population Dynamics . . . . ??
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc

Journal of Theoretical Biology
Volume 258, Number 4, June 21, 2009

           Anca R\vadulescu and   
               Kingsley Cox and   
                     Paul Adams   Hebbian errors in learning: An analysis
                                  using the Oja model  . . . . . . . . . . 489--501
          Stefan Braunewell and   
               Stefan Bornholdt   Reliability of regulatory networks and
                                  its evolution  . . . . . . . . . . . . . 502--512
            Daniele Santoni and   
          Vincenzo Romano-Spica   Comparative genomic analysis by
                                  microbial COGs self-attraction rate  . . 513--520
              Tommaso Russo and   
                Paolo Baldi and   
             Antonio Parisi and   
         Giuseppe Magnifico and   
            Stefano Mariani and   
             Stefano Cataudella   Lévy processes and stochastic von
                                  Bertalanffy models of growth, with
                                  application to fish population analysis  521--529
                Thomas Alerstam   Flight by night or day? Optimal daily
                                  timing of bird migration . . . . . . . . 530--536
            Andrew Allstadt and   
              Thomas Caraco and   
                     G. Korniss   Preemptive spatial competition under a
                                  reproduction-mortality constraint  . . . 537--549
                  C. Cosner and   
                J. C. Beier and   
             R. S. Cantrell and   
               D. Impoinvil and   
              L. Kapitanski and   
                M. D. Potts and   
                   A. Troyo and   
                        S. Ruan   The effects of human movement on the
                                  persistence of vector-borne diseases . . 550--560
  Wassim Abou-Jaoudé and   
      Djomangan A. Ouattara and   
               Marcelle Kaufman   From structure to dynamics: Frequency
                                  tuning in the p53-Mdm2 network: I.
                                  Logical approach . . . . . . . . . . . . 561--577
             Sergey Astanin and   
                 Luigi Preziosi   Mathematical modelling of the Warburg
                                  effect in tumour cords . . . . . . . . . 578--590
               C. J. Rhodes and   
            T. D. Hollingsworth   Variational data assimilation with
                                  epidemic models  . . . . . . . . . . . . 591--602
                 Wendi Wang and   
              Yasuhiro Takeuchi   Adaptation of prey and predators between
                                  patches  . . . . . . . . . . . . . . . . 603--613
                Tibor Antal and   
              Arne Traulsen and   
            Hisashi Ohtsuki and   
          Corina E. Tarnita and   
                Martin A. Nowak   Mutation-selection equilibrium in games
                                  with multiple strategies . . . . . . . . 614--622
       Michael J. Tildesley and   
                Matt J. Keeling   Is $ R_0 $ a good predictor of final
                                  epidemic size: Foot-and-mouth disease in
                                  the UK . . . . . . . . . . . . . . . . . 623--629
                 Hideo Ezoe and   
                   Nami Washizu   Effect of stochasticity in the
                                  availability of pollinators on the
                                  resource allocation within a flower  . . 630--636
              Koh Hashimoto and   
                Kazuyuki Aihara   Fixation probabilities in evolutionary
                                  game dynamics with a two-strategy game
                                  in finite diploid populations  . . . . . 637--645
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 489--646 (21 June 2009)  . . . . . ??


Journal of Theoretical Biology
Volume 259, Number 1, July 7, 2009

                 Giai Petit and   
              Tommaso Anfodillo   Plant physiology in theory and practice:
                                  An analysis of the WBE model for
                                  vascular plants  . . . . . . . . . . . . 1--4
    Elizabeth M. Baptestini and   
     Marcus A. M. de Aguiar and   
          Daniel I. Bolnick and   
 Márcio S. Araújo   The shape of the competition and
                                  carrying capacity kernels affects the
                                  likelihood of disruptive selection . . . 5--11
          Boris Kartascheff and   
            Christian Guill and   
                Barbara Drossel   Positive complexity-stability relations
                                  in food web models without foraging
                                  adaptation . . . . . . . . . . . . . . . 12--23
      József Baranyi and   
            Susan M. George and   
          Zoltán Kutalik   Parameter estimation for the
                                  distribution of single cell lag times    24--30
                    J. Krishnan   Signal processing through a generalized
                                  module of adaptation and spatial sensing 31--43
             Erik B. Muller and   
Sebastiaan A. L. M. Kooijman and   
           Peter J. Edmunds and   
           Francis J. Doyle and   
                Roger M. Nisbet   Dynamic energy budgets in syntrophic
                                  symbiotic relationships between
                                  heterotrophic hosts and photoautotrophic
                                  symbionts  . . . . . . . . . . . . . . . 44--57
         Tsuyoshi Hirashima and   
                  Yoh Iwasa and   
            Yoshihiro Morishita   Dynamic modeling of branching
                                  morphogenesis of ureteric bud in early
                                  kidney development . . . . . . . . . . . 58--66
                  P. Gerlee and   
              A. R. A. Anderson   Evolution of cell motility in an
                                  individual-based model of tumour growth  67--83
             Luis G. Moyano and   
           Angel Sánchez   Evolving learning rules and emergence of
                                  cooperation in spatial prisoner's
                                  dilemma  . . . . . . . . . . . . . . . . 84--95
            S. Rüdiger and   
            L. Schimansky-Geier   Dynamics of excitable elements with
                                  time-delayed coupling  . . . . . . . . . 96--100
                      H. Wu and   
                  J. W. Kim and   
             P. A. Robinson and   
                 P. M. Drysdale   Firing pattern of bursting neurons under
                                  sinusoidal drive in mean-field modeling  101--108
Tamara Münkemüller and   
             Harald Bugmann and   
                    Karin Johst   Hutchinson revisited: Patterns of
                                  density regulation and the coexistence
                                  of strong competitors  . . . . . . . . . 109--117
           Mathieu Cloutier and   
               Jingkui Chen and   
             Frithjof Tatge and   
 Virginie McMurray-Beaulieu and   
             Michel Perrier and   
                Mario Jolicoeur   Kinetic metabolic modelling for the
                                  control of plant cells cytoplasmic
                                  phosphate  . . . . . . . . . . . . . . . 118--131
                Yuta Shiino and   
             Osamu Kuwazuru and   
             Nobuhiro Yoshikawa   Computational fluid dynamics simulations
                                  on a Devonian spiriferid
                                  \bionameParaspirifer bownockeri
                                  (\bionameBrachiopoda): Generating
                                  mechanism of passive feeding flows . . . 132--141
     Nebojsa T. Milosevi\'c and   
         Dusan Ristanovi\'c and   
         Herbert F. Jelinek and   
            Katarina Rajkovi\'c   Quantitative analysis of dendritic
                                  morphology of the alpha and delta
                                  retinal ganglion cells in the rat: a
                                  cell classification study  . . . . . . . 142--150
        Justin M. J. Travis and   
               Karen Mustin and   
              Tim G. Benton and   
                  Calvin Dytham   Accelerating invasion rates result from
                                  the evolution of density-dependent
                                  dispersal  . . . . . . . . . . . . . . . 151--158
                  Qi-Shi Du and   
                Ri-Bo Huang and   
             Cheng-Hua Wang and   
               Xiao-Ming Li and   
                  Kuo-Chen Chou   Energetic analysis of the two
                                  controversial drug binding sites of the
                                  M2 proton channel in influenza A virus   159--164
                Zhilan Feng and   
                Yiding Yang and   
                  Dashun Xu and   
                  Pei Zhang and   
         \ldots John W. Glasser   Timely identification of optimal control
                                  strategies for emerging infectious
                                  diseases . . . . . . . . . . . . . . . . 165--171
              Reginald D. Smith   Plant-mycorrhiza percent infection as
                                  evidence of coupled metabolism . . . . . 172--175
      Aitor González and   
             Ryoichiro Kageyama   Hopf bifurcation in the presomitic
                                  mesoderm during the mouse segmentation   176--189
          Sergey V. Brodsky and   
                   Iouri Ivanov   Spermatozoa--somatic cell fusion --- a
                                  mechanism for microchimerism formation   190--192
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--192 (7 July 2009) . . . . . . . ??

Journal of Theoretical Biology
Volume 259, Number 2, July 21, 2009

                Tze-wai Tam and   
                     Put O. Ang   Catastrophic regime shifts in coral
                                  communities exposed to physical
                                  disturbances: Simulation results from
                                  object-oriented $3$-dimensional coral
                                  reef model . . . . . . . . . . . . . . . 193--208
            Akiko N. Mizuno and   
                Masakado Kawata   The effects of the evolution of
                                  stoichiometry-related traits on
                                  population dynamics in plankton
                                  communities  . . . . . . . . . . . . . . 209--218
               Shingo Iwami and   
          Yasuhiro Takeuchi and   
               Xianning Liu and   
                 Shinji Nakaoka   A geographical spread of
                                  vaccine-resistance in avian influenza
                                  epidemics  . . . . . . . . . . . . . . . 219--228
       Yovani Marrero-Ponce and   
    Sadiel E. Ortega-Broche and   
Yunaimy Echeverr\'ìa D\'ìaz and   
         Ysaias J. Alvarado and   
            Nestor Cubillan and   
       Gladys Casas Cardoso and   
          Francisco Torrens and   
Facundo Pérez-Giménez   Nucleotide's bilinear indices: Novel
                                  bio-macromolecular descriptors for
                                  bioinformatics studies of nucleic acids.
                                  I. Prediction of paromomycin's affinity
                                  constant with HIV-1 $ \Psi $-RNA
                                  packaging region . . . . . . . . . . . . 229--241
          Ranjan K. Pradhan and   
             V. S. Chakravarthy   Desynchronized vasomotion and
                                  desynchronized fiber activation pattern
                                  enhance oxygenation in a model of
                                  skeletal muscle  . . . . . . . . . . . . 242--252
        Murray E. Alexander and   
          Sarah M. Dietrich and   
                     Yi Hua and   
              Seyed M. Moghadas   A comparative evaluation of modelling
                                  strategies for the effect of treatment
                                  and host interactions on the spread of
                                  drug resistance  . . . . . . . . . . . . 253--263
               William H. James   The variances of the distributions of
                                  the combinations of the sexes within
                                  mammalian litters: Notes to mark the
                                  centenary of the problem . . . . . . . . 264--268
               Anca R\vadulescu   A multi-etiology model of systemic
                                  degeneration in schizophrenia  . . . . . 269--279
            Paula Rodrigues and   
        Alessandro Margheri and   
             Carlota Rebelo and   
           M. Gabriela M. Gomes   Heterogeneity in susceptibility to
                                  infection can explain high reinfection
                                  rates  . . . . . . . . . . . . . . . . . 280--290
         Bogdan Kazmierczak and   
               Tomasz Lipniacki   Regulation of kinase activity by
                                  diffusion and feedback . . . . . . . . . 291--296
              W. J. N. Fernando   Theoretical considerations and modeling
                                  of chemical inactivation of
                                  microorganisms: Inactivation of Giardia
                                  Cysts by free chlorine . . . . . . . . . 297--303
Frédéric Dayan and   
            Marc Monticelli and   
  Jacques Pouysségur and   
         Elisabeth Pécou   Gene regulation in response to graded
                                  hypoxia: The non-redundant roles of the
                                  oxygen sensors PHD and FIH in the HIF
                                  pathway  . . . . . . . . . . . . . . . . 304--316
               N. H. Barton and   
                      J. B. Coe   On the application of statistical
                                  physics to evolutionary biology  . . . . 317--324
        T. Hölttä and   
              M. Mencuccini and   
                    E. Nikinmaa   Linking phloem function to structure:
                                  Analysis with a coupled xylem-phloem
                                  transport model  . . . . . . . . . . . . 325--337
            Erin R. Higgins and   
             Heiko Schmidle and   
                  Martin Falcke   Waiting time distributions for clusters
                                  of IP3 receptors . . . . . . . . . . . . 338--349
             Christian Rode and   
             Tobias Siebert and   
              Reinhard Blickhan   Titin-induced force enhancement and
                                  force depression: a `sticky-spring'
                                  mechanism in muscle contractions?  . . . 350--360
                   Li Zhang and   
                    Bo Liao and   
                  Dachao Li and   
                        Wen Zhu   A novel representation for apoptosis
                                  protein subcellular localization
                                  prediction using support vector machine  361--365
               Yu-hong Zeng and   
                Yan-zhi Guo and   
             Rong-quan Xiao and   
                    Li Yang and   
                Le-zheng Yu and   
                   Meng-long Li   Using the augmented Chou's pseudo amino
                                  acid composition for predicting protein
                                  submitochondria locations based on auto
                                  covariance approach  . . . . . . . . . . 366--372
             J. David Logan and   
               Glenn Ledder and   
             William Wolesensky   Type II functional response for
                                  continuous, physiologically structured
                                  models . . . . . . . . . . . . . . . . . 373--381
                F. Di Patti and   
                     D. Fanelli   A stochastic reaction scheme for
                                  drug/metabolite interaction  . . . . . . 382--388
            Jun Nakabayashi and   
                   Akira Sasaki   A mathematical model of the
                                  stoichiometric control of Smad complex
                                  formation in TGF-$ \beta $ signal
                                  transduction pathway . . . . . . . . . . 389--403
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 193--404 (21 July 2009)  . . . . . ??

Journal of Theoretical Biology
Volume 259, Number 3, August 7, 2009

                  M. Welter and   
                  K. Bartha and   
                      H. Rieger   Vascular remodelling of an
                                  arterio-venous blood vessel network
                                  during solid tumour growth . . . . . . . 405--422
             Diana E. Marco and   
           Juan P. Carbajal and   
              Sergio Cannas and   
 Rebeca Pérez-Arnedo and   
Ángeles Hidalgo-Perea and   
       José Olivares and   
  José E. Ruiz-Sainz and   
            Juan Sanjuán   An experimental and modelling
                                  exploration of the host-sanction
                                  hypothesis in legume-rhizobia mutualism  423--433
                       Ping Xie   A possible mechanism for the dynamics of
                                  transition between polymerase and
                                  exonuclease sites in a high-fidelity DNA
                                  polymerase . . . . . . . . . . . . . . . 434--439
             Francis Corson and   
         Mokhtar Adda-Bedia and   
                Arezki Boudaoud   In silico leaf venation networks: Growth
                                  and reorganization driven by mechanical
                                  forces . . . . . . . . . . . . . . . . . 440--448
    Arvind Santhanakrishnan and   
                 Nhi Nguyen and   
            Jennifer G. Cox and   
                Laura A. Miller   Flow within models of the vertebrate
                                  embryonic heart  . . . . . . . . . . . . 449--461
         Alexey Mikaberidze and   
                  Masudul Haque   Survival benefits in mimicry: a
                                  quantitative framework . . . . . . . . . 462--468
          Gregory J. Howard and   
              Thomas F. Webster   Generalized concentration addition: a
                                  method for examining mixtures containing
                                  partial agonists . . . . . . . . . . . . 469--477
               Marco Ajelli and   
                 Stefano Merler   An individual-based model of hepatitis A
                                  transmission . . . . . . . . . . . . . . 478--488
              R. J. Shipley and   
                G. W. Jones and   
                R. J. Dyson and   
              B. G. Sengers and   
                \ldots J. Malda   Design criteria for a printed tissue
                                  engineering construct: a mathematical
                                  homogenization approach  . . . . . . . . 489--502
            Alexander Lange and   
                   Reuven Dukas   Bayesian approximations and extensions:
                                  Optimal decisions for small brains and
                                  possibly big ones too  . . . . . . . . . 503--516
           Samad Jahandideh and   
           Somayyeh Hoseini and   
            Mina Jahandideh and   
            Afsaneh Hoseini and   
           Fatemeh Miri Disfani   $ \gamma $-turn types prediction in
                                  proteins using the two-stage hybrid
                                  neural discriminant model  . . . . . . . 517--522
               Thomas Clerc and   
         Anthony C. Davison and   
     Louis-Félix Bersier   Stochastic modelling of prey depletion
                                  processes  . . . . . . . . . . . . . . . 523--532
               Ashish Anand and   
                P. N. Suganthan   Multiclass cancer classification by
                                  support vector machines with class-wise
                                  optimized genes and probability
                                  estimates  . . . . . . . . . . . . . . . 533--540
         Benjamin J. Binder and   
               Kerry A. Landman   Exclusion processes on a growing domain  541--551
                      Dan Dediu   Genetic biasing through cultural
                                  transmission: Do simple Bayesian models
                                  of language evolution generalise?  . . . 552--561
        Zuzanna Szyma\'nska and   
                  Maciej Zylicz   Mathematical modeling of heat shock
                                  protein synthesis in response to
                                  temperature change . . . . . . . . . . . 562--569
          Corina E. Tarnita and   
            Hisashi Ohtsuki and   
                Tibor Antal and   
                    Feng Fu and   
                Martin A. Nowak   Strategy selection in structured
                                  populations  . . . . . . . . . . . . . . 570--581
               Zhi-Ping Mei and   
              Zoe V. Finkel and   
                Andrew J. Irwin   Light and nutrient availability affect
                                  the size-scaling of growth in
                                  phytoplankton  . . . . . . . . . . . . . 582--588
            Matthijs van Veelen   Group selection, kin selection, altruism
                                  and cooperation: When inclusive fitness
                                  is right and when it can be wrong  . . . 589--600
                  Samraat Pawar   Community assembly, stability and
                                  signatures of dynamical constraints on
                                  food web structure . . . . . . . . . . . 601--612
       Chaitanya S. Gokhale and   
                  Yoh Iwasa and   
            Martin A. Nowak and   
                  Arne Traulsen   The pace of evolution across fitness
                                  valleys  . . . . . . . . . . . . . . . . 613--620
                       G. Yagil   The structural complexity of DNA
                                  templates --- implications on cellular
                                  complexity . . . . . . . . . . . . . . . 621--627
             Johanna Weindl and   
                 Zaher Dawy and   
                Pavol Hanus and   
               Juergen Zech and   
               Jakob C. Mueller   Modeling promoter search by \bionameE.
                                  coli RNA polymerase: One-dimensional
                                  diffusion in a sequence-dependent energy
                                  landscape  . . . . . . . . . . . . . . . 628--634
           Jorge M. Pacheco and   
              Arne Traulsen and   
                   David Dingli   The allometry of chronic myeloid
                                  leukemia . . . . . . . . . . . . . . . . 635--640
                      Yong Kong   Calculating complexity of large
                                  randomized libraries . . . . . . . . . . 641--645
                Louis G. Zachos   A new computational growth model for sea
                                  urchin skeletons . . . . . . . . . . . . 646--657
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 405--658 (7 August 2009) . . . . . ??

Journal of Theoretical Biology
Volume 259, Number 4, August 21, 2009

             R. N. Tchuraev and   
              A. V. Galimzyanov   Gene and epigene networks: Two levels in
                                  organizing the hereditary system . . . . 659--669
            Brian V. Merkey and   
          Bruce E. Rittmann and   
                 David L. Chopp   Modeling how soluble microbial products
                                  (SMP) support heterotrophic bacteria in
                                  autotroph-based biofilms . . . . . . . . 670--683
              Thomas W. Yee and   
           Thomas Dirnböck   Models for analysing species'
                                  presence/absence data at two time points 684--694
                   A. Jinha and   
              R. Ait-Haddou and   
                    M. Kaya and   
                      W. Herzog   A task-specific validation of
                                  homogeneous non-linear optimisation
                                  approaches . . . . . . . . . . . . . . . 695--700
             Danielle Lyles and   
         Todd S. Rosenstock and   
              Alan Hastings and   
               Patrick H. Brown   The role of large environmental noise in
                                  masting: General model and example from
                                  pistachio trees  . . . . . . . . . . . . 701--713
               Urs Stoecker and   
              Ivo A. Telley and   
          Edgar Stüssi and   
                  Jachen Denoth   A multisegmental cross-bridge kinetics
                                  model of the myofibril . . . . . . . . . 714--726
            Pierre Legendre and   
                Yves Desdevises   Independent contrasts and regression
                                  through the origin . . . . . . . . . . . 727--743
                     Hideo Ezoe   Dual lattice model of the evolution of
                                  facultative symbiosis with continuous
                                  Prisoner's Dilemma game  . . . . . . . . 744--750
                 David Burg and   
                 Libin Rong and   
          Avidan U. Neumann and   
                   Harel Dahari   Mathematical modeling of viral kinetics
                                  under immune control during primary
                                  HIV-1 infection  . . . . . . . . . . . . 751--759
              Zhongxing Mai and   
                     Haiyan Liu   Boolean network-based analysis of the
                                  apoptosis network: Irreversible
                                  apoptosis and stable surviving . . . . . 760--769
                    Zhao Lu and   
              Yrjo T. Grohn and   
           Rebecca L. Smith and   
          David R. Wolfgang and   
       Jo Ann S. Van Kessel and   
               Ynte H. Schukken   Assessing the potential impact of
                                  Salmonella vaccines in an endemically
                                  infected dairy herd  . . . . . . . . . . 770--784
               Javier Urzay and   
  Stefan G. Llewellyn Smith and   
            Elinor Thompson and   
             Beverley J. Glover   Wind gusts and plant aeroelasticity
                                  effects on the aerodynamics of pollen
                                  shedding: a hypothetical
                                  turbulence-initiated wind-pollination
                                  mechanism  . . . . . . . . . . . . . . . 785--792
              Hsiuying Wang and   
                  Wen-Hsiung Li   Increasing MicroRNA target prediction
                                  confidence by the relative $ R^2 $
                                  method . . . . . . . . . . . . . . . . . 793--798
                   Z. Patwa and   
                     L. M. Wahl   The impact of host-cell dynamics on the
                                  fixation probability for lytic viruses   799--810
             Jianyong Huang and   
                    Lei Qin and   
              Xiaoling Peng and   
                    Tao Zhu and   
             Chunyang Xiong and   
                Youyi Zhang and   
                      Jing Fang   Cellular traction force recovery: An
                                  optimal filtering approach in
                                  two-dimensional Fourier space  . . . . . 811--819
                Badal Joshi and   
               Xueying Wang and   
           Sayanti Banerjee and   
                Haiyan Tian and   
      Anastasios Matzavinos and   
            Mark A. J. Chaplain   On immunotherapies and cancer
                                  vaccination protocols: a mathematical
                                  modelling approach . . . . . . . . . . . 820--827
               Sheng-Nan Wu and   
             Bing-Shuo Chen and   
                  Tai-I Hsu and   
                 Hsung Peng and   
                Yung-Han Wu and   
                    Yi-Ching Lo   Analytical studies of rapidly
                                  inactivating and noninactivating sodium
                                  currents in differentiated NG108-15
                                  neuronal cells . . . . . . . . . . . . . 828--836
               N. J. Warren and   
               M. H. Tawhai and   
                  E. J. Crampin   A mathematical model of calcium-induced
                                  fluid secretion in airway epithelium . . 837--849
      Inma R. Cantalapiedra and   
  Angelina Peñaranda and   
                 Lluis Mont and   
              Josep Brugada and   
                Blas Echebarria   Reexcitation mechanisms in epicardial
                                  tissue: Role of $ I_{\rm to} $ density
                                  heterogeneities and I$_{\rm Na}$
                                  inactivation kinetics  . . . . . . . . . 850--859
                 Brian K. Davis   On mapping the genetic code  . . . . . . 860--862
       Michael J. Tildesley and   
                Matt J. Keeling   Corrigendum to ``Is $ R_0 $ a good
                                  predictor of final epidemic size:
                                  Foot-and-mouth disease in the UK'': [J.
                                  Theor. Biol. 258 (2009) 623--629]  . . . 863--863
   Monika Joanna Piotrowska and   
                 Simon D. Angus   Corrigendum to ``A quantitative cellular
                                  automaton model of in vitro
                                  multicellular spheroid tumour growth''
                                  [J. Theor. Biol. \bf 258 (2009)
                                  165--178]  . . . . . . . . . . . . . . . 864--864
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 659--864 (21 August 2009)  . . . . ??


Journal of Theoretical Biology
Volume 260, Number 1, September 7, 2009

                Pedro Moreo and   
José Manuel García-Aznar and   
          Manuel Doblaré   Bone ingrowth on the surface of
                                  endosseous implants. Part 1:
                                  Mathematical model . . . . . . . . . . . 1--12
                Pedro Moreo and   
José Manuel García-Aznar and   
          Manuel Doblaré   Bone ingrowth on the surface of
                                  endosseous implants. Part 2: Theoretical
                                  and numerical analysis . . . . . . . . . 13--26
               Dooyoung Lee and   
            Kelly E. Caputo and   
           Daniel A. Hammer and   
                Michael R. King   Adhesive dynamics simulations of the
                                  mechanical shedding of L-selectin from
                                  the neutrophil surface . . . . . . . . . 27--30
              Piero Poletti and   
              Bruno Caprile and   
               Marco Ajelli and   
            Andrea Pugliese and   
                 Stefano Merler   Spontaneous behavioural changes in
                                  response to epidemics  . . . . . . . . . 31--40
            A. M. Middleton and   
                 J. R. King and   
                       M. Loose   Bistability in a model of mesoderm and
                                  anterior mesendoderm specification in
                                  Xenopus laevis . . . . . . . . . . . . . 41--55
           Kenichi Nakazato and   
              Atsushi Mochizuki   Steepness of thermal gradient is
                                  essential to obtain a unified view of
                                  thermotaxis in \bionameC. elegans  . . . 56--65
           Andre S. Ribeiro and   
               Xiaofeng Dai and   
                 Olli Yli-Harja   Variability of the distribution of
                                  differentiation pathway choices
                                  regulated by a multipotent delayed
                                  stochastic switch  . . . . . . . . . . . 66--76
              Massimo Di Giulio   A methanogen hosted the origin of the
                                  genetic code . . . . . . . . . . . . . . 77--82
           Simone Pigolotti and   
                Massimo Cencini   Speciation-rate dependence in
                                  species-area relationships . . . . . . . 83--89
              Mariko Kimura and   
                    Yasuo Ihara   Replicator-dynamics models of sexual
                                  conflict . . . . . . . . . . . . . . . . 90--97
             A. M. Reynolds and   
                   F. Bartumeus   Optimising the success of random
                                  destructive searches: Lévy walks can
                                  outperform ballistic motions . . . . . . 98--103
                Zhao-Hui Qi and   
              Jian-Min Wang and   
                    Xiao-Qin Qi   Classification analysis of dual
                                  nucleotides using dimension reduction    104--109
               Jason Zwolak and   
            Nassiba Adjerid and   
             Elife Z. Bagci and   
              John J. Tyson and   
                  Jill C. Sible   A quantitative model of the effect of
                                  unreplicated DNA on cell cycle
                                  progression in frog egg extracts . . . . 110--120
          Sébastien Lion   Relatedness in spatially structured
                                  populations with empty sites: An
                                  approach based on spatial moment
                                  equations  . . . . . . . . . . . . . . . 121--131
         Robert L. Unckless and   
               Jeremy K. Herren   Population genetics of sexually
                                  antagonistic mitochondrial mutants under
                                  inbreeding . . . . . . . . . . . . . . . 132--136
                Sean X. Sun and   
             Brenda Farrell and   
           Matthew S. Chana and   
               George Oster and   
        William E. Brownell and   
           Alexander A. Spector   Voltage and frequency dependence of
                                  prestin-associated charge transfer . . . 137--144
        Krzysztof Mogielski and   
             Tadeusz Platkowski   A mechanism of dynamical interactions
                                  for two-person social dilemmas . . . . . 145--150
              Marco Scianna and   
        Roeland M. H. Merks and   
             Luigi Preziosi and   
                    Enzo Medico   Individual cell-based models of cell
                                  scatter of ARO and MLP-29 cells in
                                  response to hepatocyte growth factor . . 151--160
             Shinji Nakaoka and   
                 Wendi Wang and   
              Yasuhiro Takeuchi   Effect of parental care and aggregation
                                  on population dynamics . . . . . . . . . 161--171
                 Robert W. Korn   A new hypothesis for stomatal placement
                                  in Arabidopsis . . . . . . . . . . . . . 172--174
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--174 (7 September 2009)  . . . . ??

Journal of Theoretical Biology
Volume 260, Number 2, September 21, 2009

         Virginia E. Pitzer and   
                  Marc Lipsitch   Exploring the relationship between
                                  incidence and the average age of
                                  infection during seasonal epidemics  . . 175--185
            Josh Mitteldorf and   
                    John Pepper   Senescence as an adaptation to limit the
                                  spread of disease  . . . . . . . . . . . 186--195
                L. Tournier and   
                      M. Chaves   Uncovering operational interactions in
                                  genetic networks using asynchronous
                                  Boolean dynamics . . . . . . . . . . . . 196--209
              Jeremy Kendal and   
        Luc-Alain Giraldeau and   
                   Kevin Laland   The evolution of social learning rules:
                                  Payoff-biased and frequency-dependent
                                  biased transmission  . . . . . . . . . . 210--219
                 Eunok Jung and   
               Shingo Iwami and   
          Yasuhiro Takeuchi and   
                   Tae-Chang Jo   Optimal control strategy for prevention
                                  of avian influenza pandemic  . . . . . . 220--229
            Andreas Fritsch and   
         Christian Hellmich and   
                   Luc Dormieux   Ductile sliding between mineral crystals
                                  followed by rupture of collagen
                                  crosslinks: Experimentally supported
                                  micromechanical explanation of bone
                                  strength . . . . . . . . . . . . . . . . 230--252
          Joost C. M. Uitdehaag   The dependency game: Multiperson
                                  reciprocal sharing leads to stable
                                  cooperation which can evolve into group
                                  formation  . . . . . . . . . . . . . . . 253--260
           Yasunori Ohtsuka and   
             Yukihiko Toquenaga   The patch distributed producer-scrounger
                                  game . . . . . . . . . . . . . . . . . . 261--266
               Edwin H. Battley   Is electron equivalence between
                                  substrate and product preferable to
                                  C-mol equivalence in representations of
                                  microbial anabolism applicable to
                                  ``origin of life'' environmental
                                  conditions?  . . . . . . . . . . . . . . 267--275
        Roger Härdling and   
              Kristina Karlsson   The dynamics of sexually antagonistic
                                  coevolution and the complex influences
                                  of mating system and genetic correlation 276--282
           Guido Dell'Acqua and   
            Filippo Castiglione   Stability and phase transitions in a
                                  mathematical model of Duchenne muscular
                                  dystrophy  . . . . . . . . . . . . . . . 283--289
            Mareike Fischer and   
          Bhalchandra D. Thatte   Maximum parsimony on subsets of taxa . . 290--293
                Ilan Gronau and   
               Shlomo Moran and   
                    Irad Yavneh   Towards optimal distance functions for
                                  stochastic substitution models . . . . . 294--307
                 Libin Rong and   
               Alan S. Perelson   Modeling HIV persistence, the latent
                                  reservoir, and viral blips . . . . . . . 308--331
         Maxim Lavrentovich and   
                  Sheryl Hemkin   Corrigendum to ``A mathematical model of
                                  spontaneous calcium(II) oscillations in
                                  astrocytes'' [J. Theor. Biol. \bf 251
                                  (2008) 553--560] . . . . . . . . . . . . 332--332
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 175--332 (21 September 2009) . . . ??

Journal of Theoretical Biology
Volume 260, Number 3, October 7, 2009

               Jure Derganc and   
               Sasa Svetina and   
                   Bostjan Zeks   Equilibrium mechanics of monolayered
                                  epithelium . . . . . . . . . . . . . . . 333--339
              Mukhtar Ullah and   
               Olaf Wolkenhauer   Investigating the two-moment
                                  characterisation of subcellular
                                  biochemical networks . . . . . . . . . . 340--352
        Masayuki Koganezawa and   
               Hiroaki Hara and   
         Yoshinori Hayakawa and   
                 Ichiro Shimada   Memory effects on scale-free dynamics in
                                  foraging Drosophila  . . . . . . . . . . 353--358
                Yangjin Kim and   
                Sean Lawler and   
         Micha\l O. Nowicki and   
         E. Antonio Chiocca and   
                 Avner Friedman   A mathematical model for pattern
                                  formation of glioma cells outside the
                                  tumor spheroid core  . . . . . . . . . . 359--371
                 Anna Fedor and   
                     Vera Vasas   The robustness of keystone indices in
                                  food webs  . . . . . . . . . . . . . . . 372--378
             Matthew G. Burgess   Sub-optimal pit construction in
                                  predatory ant lion larvae
                                  (\bionameMyrmeleon sp.)  . . . . . . . . 379--385
           James A. R. Marshall   The donation game with roles played
                                  between relatives  . . . . . . . . . . . 386--391
               Koichi Saeki and   
                      Yoh Iwasa   Advantage of having regulatory T cells
                                  requires localized suppression of immune
                                  reactions  . . . . . . . . . . . . . . . 392--401
  Mathieu Moslonka-Lefebvre and   
             Marco Pautasso and   
                  Mike J. Jeger   Disease spread in small-size directed
                                  networks: Epidemic threshold,
                                  correlation between links to and from
                                  nodes, and clustering  . . . . . . . . . 402--411
           Andreea Munteanu and   
               Peter F. Stadler   Mutate now, die later. Evolutionary
                                  dynamics with delayed selection  . . . . 412--421
          Ivan V. Surovtsev and   
              Zhigang Zhang and   
            Paul A. Lindahl and   
              Jeffrey J. Morgan   Mathematical modeling of a minimal
                                  protocell with coordinated growth and
                                  division . . . . . . . . . . . . . . . . 422--429
               Satoki Sakai and   
                  Tomomi Kojima   Overproduction and selective abortion of
                                  ovules based on the order of
                                  fertilization revisited  . . . . . . . . 430--437
        Zakharia M. Frenkel and   
            Zeev M. Frenkel and   
         Edward N. Trifonov and   
                      Sagi Snir   Structural relatedness via flow networks
                                  in protein sequence space  . . . . . . . 438--444
            Ettore Murabito and   
       Evangelos Simeonidis and   
           Kieran Smallbone and   
               Jonathan Swinton   Capturing the essence of a metabolic
                                  network: a flux balance analysis
                                  approach . . . . . . . . . . . . . . . . 445--452
                Kiyoshi Ito and   
                   Satoki Sakai   Optimal defense strategy against
                                  herbivory in plants: Conditions
                                  selecting for induced defense,
                                  constitutive defense, and no-defense . . 453--459
               G. A. Parker and   
                 M. A. Ball and   
                    J. C. Chubb   Why do larval helminths avoid the gut of
                                  intermediate hosts?  . . . . . . . . . . 460--473
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 333--474 (7 October 2009)  . . . . ??

Journal of Theoretical Biology
Volume 260, Number 4, October 21, 2009

            Dmitriy Laschov and   
              Michael Margaliot   Mathematical modeling of the lambda
                                  switch: a fuzzy logic approach . . . . . 475--489
               Shingo Iwami and   
             Tomoyuki Miura and   
             Shinji Nakaoka and   
              Yasuhiro Takeuchi   Immune impairment in HIV infection:
                                  Existence of risky and immunodeficiency
                                  thresholds . . . . . . . . . . . . . . . 490--501
               Hongjian Guo and   
                    Lansun Chen   Periodic solution of a chemostat model
                                  with Monod growth rate and impulsive
                                  state feedback control . . . . . . . . . 502--509
          Linda J. S. Allen and   
           Curtis L. Wesley and   
             Robert D. Owen and   
          Douglas G. Goodin and   
                 David Koch and   
         Colleen B. Jonsson and   
               Yong-Kyu Chu and   
     J. M. Shawn Hutchinson and   
                Robert L. Paige   A habitat-based model for the spread of
                                  hantavirus between reservoir and
                                  spillover species  . . . . . . . . . . . 510--522
                Won-Kap Kim and   
                Jin Hwan Ko and   
            Hoon Cheol Park and   
                   Doyoung Byun   Effects of corrugation of the dragonfly
                                  wing on gliding performance  . . . . . . 523--530
                Ch. Darabos and   
               M. Tomassini and   
                   M. Giacobini   Dynamics of unperturbed and noisy
                                  generalized Boolean networks . . . . . . 531--544
Frédérique Billy and   
             Benjamin Ribba and   
               Olivier Saut and   
Hél\`ene Morre-Trouilhet and   
              Thierry Colin and   
              Didier Bresch and   
        Jean-Pierre Boissel and   
           Emmanuel Grenier and   
          Jean-Pierre Flandrois   A pharmacologically based multiscale
                                  mathematical model of angiogenesis and
                                  its use in investigating the efficacy of
                                  a new cancer treatment strategy  . . . . 545--562
              Liene Daukste and   
               Britta Basse and   
           Bruce C. Baguley and   
               David J. N. Wall   Using a stem cell and progeny model to
                                  illustrate the relationship between cell
                                  cycle times of in vivo human tumour cell
                                  tissue populations, in vitro primary
                                  cultures and the cell lines derived from
                                  them . . . . . . . . . . . . . . . . . . 563--571
             J. F. Selgrade and   
               L. A. Harris and   
                  R. D. Pasteur   A model for hormonal control of the
                                  menstrual cycle: Structural consistency
                                  but sensitivity with regard to data  . . 572--580
               Max O. Souza and   
           Jorge M. Pacheco and   
            Francisco C. Santos   Evolution of cooperation under
                                  $N$-person snowdrift games . . . . . . . 581--588
            David V. Foster and   
            Jacob G. Foster and   
                  Sui Huang and   
             Stuart A. Kauffman   A model of sequential branching in
                                  hierarchical cell fate determination . . 589--597
   Björn F. C. Kafsack and   
         Vern B. Carruthers and   
             Fernando J. Pineda   Erratum to ``Kinetic modeling of
                                  Toxoplasma gondii invasion'' [J. Theor.
                                  Biol. \bf 249 (2007) 817--825] . . . . . 598--598
               C. J. Rhodes and   
            T. D. Hollingsworth   Corrigendum to ``Variational data
                                  assimilation with epidemic models'' [J.
                                  Theor. Biol. \bf 258 (2009) 591--602]    599--599
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 475--600 (21 October 2009) . . . . ??


Journal of Theoretical Biology
Volume 261, Number 1, November 7, 2009

             Max R. Bennett and   
                Les Farnell and   
              William G. Gibson   P2X7 regenerative-loop potentiation of
                                  glutamate synaptic transmission by
                                  microglia and astrocytes . . . . . . . . 1--16
                 Yunfei Pei and   
                    Xi Wang and   
                  Xuegong Zhang   Predicting the fate of microRNA target
                                  genes based on sequence features . . . . 17--22
                 Zuxiong Li and   
               Tieying Wang and   
                    Lansun Chen   Periodic solution of a chemostat model
                                  with Beddington-DeAnglis uptake function
                                  and impulsive state feedback control . . 23--32
                    Ning Li and   
               Kiranmoy Das and   
                    Rongling Wu   Functional mapping of human growth
                                  trajectories . . . . . . . . . . . . . . 33--42
           Yasuhiro Imafuku and   
                Neil Thomas and   
               Katsuhisa Tawada   Hopping and stalling of processive
                                  molecular motors . . . . . . . . . . . . 43--49
          Corina E. Tarnita and   
                Tibor Antal and   
                Martin A. Nowak   Mutation-selection equilibrium in games
                                  with mixed strategies  . . . . . . . . . 50--57
                  Tanja Stadler   On incomplete sampling under birth-death
                                  models and connections to the
                                  sampling-based coalescent  . . . . . . . 58--66
       Shelby H. Steinmeyer and   
                 Claus O. Wilke   Lethal mutagenesis in a structured
                                  environment  . . . . . . . . . . . . . . 67--73
           Atsushi Yamauchi and   
            Takaaki Nishida and   
               Takayuki Ohgushi   Stochastic tunneling in the colonization
                                  of mutualistic organisms: Primary
                                  succession by mycorrhizal plants . . . . 74--82
                Mahmut Ozer and   
         Muhammet Uzuntarla and   
                Matjaz Perc and   
                 Lyle J. Graham   Spike latency and jitter of neuronal
                                  membrane patches with stochastic
                                  Hodgkin--Huxley channels . . . . . . . . 83--92
                   Huai Cao and   
               Hua-Zhen Xie and   
                  Wen Zhang and   
                   Kan Wang and   
                     Wei Li and   
                    Ci-Quan Liu   Dynamic extended folding: Modeling the
                                  RNA secondary structures during
                                  co-transcriptional folding . . . . . . . 93--99
   Rodrigo Gouveia-Oliveira and   
           Anders Gorm Pedersen   Higher variability in the number of
                                  sexual partners in males can contribute
                                  to a higher prevalence of sexually
                                  transmitted diseases in females  . . . . 100--106
       Maria-Josefina Hernandez   Disentangling nature, strength and
                                  stability issues in the characterization
                                  of population interactions . . . . . . . 107--119
              Peter Donnell and   
         Stephen A. Baigent and   
                   Murad Banaji   Monotone dynamics of two cells
                                  dynamically coupled by a
                                  voltage-dependent gap junction . . . . . 120--125
        Javier Macía and   
            Stefanie Widder and   
             Ricard Solé   Why are cellular switches Boolean?
                                  General conditions for multistable
                                  genetic circuits . . . . . . . . . . . . 126--135
H. González-D\'ìaz and   
 L. G. Pérez-Montoto and   
          A. Duardo-Sanchez and   
                E. Paniagua and   
   S. Vázquez-Prieto and   
                   R. Vilas and   
           M. A. Dea-Ayuela and   
  F. Bolas-Fernández and   
             C. R. Munteanu and   
                  J. Dorado and   
                  J. Costas and   
                   F. M. Ubeira   Generalized lattice graphs for
                                  2D-visualization of biological
                                  information  . . . . . . . . . . . . . . 136--147
             Jacobo Aguirre and   
        Ester Lázaro and   
            Susanna C. Manrubia   A trade-off between neutrality and
                                  adaptability limits the optimization of
                                  viral quasispecies . . . . . . . . . . . 148--155
            Jun Nakabayashi and   
                   Akira Sasaki   The function of temporally ordered viral
                                  gene expression in the intracellular
                                  replication of herpes simplex virus type
                                  1 (HSV-1)  . . . . . . . . . . . . . . . 156--164
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 1--164 (7 November 2009) . . . . . ??

Journal of Theoretical Biology
Volume 261, Number 2, November 21, 2009

              A. B. Strathe and   
         H. Sòrensen and   
                A. Danfær   A new mathematical model for combining
                                  growth and energy intake in animals: The
                                  case of the growing pig  . . . . . . . . 165--175
                Thimo Rohlf and   
               Stefan Bornholdt   Morphogenesis by coupled regulatory
                                  networks: Reliable control of positional
                                  information and proportion regulation    176--193
        René Lefever and   
            Nicolas Barbier and   
            Pierre Couteron and   
                Olivier Lejeune   Deeply gapped vegetation patterns: On
                                  crown/root allometry, criticality and
                                  desertification  . . . . . . . . . . . . 194--209
   Raghavendra P. Kukillaya and   
                  Philip Holmes   A model for insect locomotion in the
                                  horizontal plane: Feedforward activation
                                  of fast muscles, stability, and
                                  robustness . . . . . . . . . . . . . . . 210--226
              David Finnoff and   
                John Tschirhart   Plant competition and exclusion with
                                  optimizing individuals . . . . . . . . . 227--237
                Joseph Lachance   Inbreeding, pedigree size, and the most
                                  recent common ancestor of humanity . . . 238--247
        Thanneer M. Perumal and   
                     Yan Wu and   
              Rudiyanto Gunawan   Dynamical analysis of cellular networks
                                  based on the Green's function matrix . . 248--259
             Mark M. Tanaka and   
            Scott A. Sisson and   
                  Garry C. King   High affinity extremes in combinatorial
                                  libraries and repertoires  . . . . . . . 260--265
                   P. Blavy and   
                 F. Gondret and   
                 H. Guillou and   
              S. Lagarrigue and   
            P. G. P. Martin and   
              J. van Milgen and   
               O. Radulescu and   
                      A. Siegel   A minimal model for hepatic fatty acid
                                  balance during fasting: Application to
                                  PPAR alpha-deficient mice  . . . . . . . 266--278
             Alexis Mari Pietak   Describing long-range patterns in leaf
                                  vasculature by metaphoric fields . . . . 279--289
                      Xi Li and   
                    Bo Liao and   
                     Yu Shu and   
             Qingguang Zeng and   
                     Jiawei Luo   Protein functional class prediction
                                  using global encoding of amino acid
                                  sequence . . . . . . . . . . . . . . . . 290--293
                Peter A. Abrams   Adaptive changes in prey vulnerability
                                  shape the response of predator
                                  populations to mortality . . . . . . . . 294--304
               Igor Shuryak and   
               David J. Brenner   A model of interactions between
                                  radiation-induced oxidative stress,
                                  protein and DNA damage in Deinococcus
                                  radiodurans  . . . . . . . . . . . . . . 305--317
          Patricia Schenker and   
                  Antonio Baici   Simultaneous interaction of enzymes with
                                  two modifiers: Reappraisal of kinetic
                                  models and new paradigms . . . . . . . . 318--329
                  Pufeng Du and   
              Shengjiao Cao and   
                       Yanda Li   SubChlo: Predicting protein
                                  subchloroplast locations with
                                  pseudo-amino acid composition and the
                                  evidence-theoretic $k$-nearest neighbor
                                  (ET-KNN) algorithm . . . . . . . . . . . 330--335
                  T. Preece and   
                         Y. Mao   Sustainability of dioecious and
                                  hermaphrodite populations on a lattice   336--340
                Ha Youn Lee and   
            Elena E. Giorgi and   
           Brandon F. Keele and   
              Brian Gaschen and   
        Gayathri S. Athreya and   
  Jesus F. Salazar-Gonzalez and   
              Kimmy T. Pham and   
           Paul A. Goepfert and   
           J. Michael Kilby and   
            Michael S. Saag and   
            Eric L. Delwart and   
           Michael P. Busch and   
           Beatrice H. Hahn and   
             George M. Shaw and   
            Bette T. Korber and   
        Tanmoy Bhattacharya and   
               Alan S. Perelson   Modeling sequence evolution in acute
                                  HIV-1 infection  . . . . . . . . . . . . 341--360
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 165--360 (21 November 2009)  . . . ??

Journal of Theoretical Biology
Volume 261, Number 3, December 7, 2009

                S. Esposito and   
                   V. Botte and   
                D. Iudicone and   
            M. Ribera d'Alcala'   Numerical analysis of cumulative impact
                                  of phytoplankton photoresponses to light
                                  variation on carbon assimilation . . . . 361--371
                Peter Aerts and   
             Sandra Nauwelaerts   Environmentally induced mechanical
                                  feedback in locomotion: Frog performance
                                  as a model . . . . . . . . . . . . . . . 372--378
          Lasse Ruokolainen and   
                  Esa Ranta and   
              Veijo Kaitala and   
                 Mike S. Fowler   Community stability under different
                                  correlation structures of species'
                                  environmental responses  . . . . . . . . 379--387
              Oleg V. Belov and   
         Evgeny A. Krasavin and   
      Alexander Yu. Parkhomenko   Model of SOS-induced mutagenesis in
                                  bacteria \bionameEscherichia coli under
                                  ultraviolet irradiation  . . . . . . . . 388--395
          A. Yu. Khrennikov and   
                  S. V. Kozyrev   $2$-Adic clustering of the PAM matrix    396--406
              Robert P. Bywater   Membrane-spanning peptides and the
                                  origin of life . . . . . . . . . . . . . 407--413
               Adam Lampert and   
                    Tsvi Tlusty   Mutability as an altruistic trait in
                                  finite asexual populations . . . . . . . 414--422
           David W. Crowder and   
                Yves Carri\`ere   Comparing the refuge strategy for
                                  managing the evolution of insect
                                  resistance under different reproductive
                                  strategies . . . . . . . . . . . . . . . 423--430
                   K. Janko and   
                      J. Eisner   Sperm-dependent parthenogens delay the
                                  spatial expansion of their sexual hosts  431--440
               Xiaofeng Dai and   
              Shannon Healy and   
             Olli Yli-Harja and   
               Andre S. Ribeiro   Tuning cell differentiation patterns and
                                  single cell dynamics by regulating
                                  proteins' functionalities in a toggle
                                  switch . . . . . . . . . . . . . . . . . 441--448
             Santiago Vilar and   
Humberto González-Díaz and   
            Lourdes Santana and   
                Eugenio Uriarte   A network-QSAR model for prediction of
                                  genetic-component biomarkers in human
                                  colorectal cancer  . . . . . . . . . . . 449--458
                Jia-Feng Yu and   
                   Xiao Sun and   
                    Ji-Hua Wang   TN curve: a novel 3D graphical
                                  representation of DNA sequence based on
                                  trinucleotides and its applications  . . 459--468
             M. K. Unnikrishnan   How is the individuality of a face
                                  recognized?  . . . . . . . . . . . . . . 469--474
                 Marco Archetti   The volunteer's dilemma and the optimal
                                  size of a social group . . . . . . . . . 475--480
                       Cang Hui   On the scaling patterns of species
                                  spatial distribution and association . . 481--487
                Tibor Antal and   
            P. L. Krapivsky and   
                      S. Redner   Shepherd model for knot-limited polymer
                                  ejection from a capsid . . . . . . . . . 488--493
               Sang Koo You and   
              Dae Hyuk Kwon and   
               Yong-ik Park and   
              Sun Myong Kim and   
           Myung-Hoon Chung and   
                   Chul Koo Kim   Collective behaviors of two-component
                                  swarms . . . . . . . . . . . . . . . . . 494--500
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 361--500 (7 December 2009) . . . . ??

Journal of Theoretical Biology
Volume 261, Number 4, December 21, 2009

             B. H. Lemasson and   
             J. J. Anderson and   
                  R. A. Goodwin   Collective motion in animal groups from
                                  a neurobiological perspective: The
                                  adaptive benefits of dynamic sensory
                                  loads and selective attention  . . . . . 501--510
               A. Polynikis and   
                S. J. Hogan and   
                 M. di Bernardo   Comparing different ODE modelling
                                  approaches for gene regulatory networks  511--530
        Peter van der Gulik and   
               Serge Massar and   
              Dimitri Gilis and   
              Harry Buhrman and   
                Marianne Rooman   The first peptides: The evolutionary
                                  transition between prebiotic amino acids
                                  and early proteins . . . . . . . . . . . 531--539
              Golnaz Vahedi and   
              Babak Faryabi and   
  Jean-Francois Chamberland and   
            Aniruddha Datta and   
            Edward R. Dougherty   Sampling-rate-dependent probabilistic
                                  Boolean networks . . . . . . . . . . . . 540--547
              David J. Gerberry   Trade-off between BCG vaccination and
                                  the ability to detect and treat latent
                                  tuberculosis . . . . . . . . . . . . . . 548--560
             Federico Prado and   
               Alyssa Sheih and   
              Jevin D. West and   
                  Benjamin Kerr   Coevolutionary cycling of host sociality
                                  and pathogen virulence in contact
                                  networks . . . . . . . . . . . . . . . . 561--569
           Dominik Szczerba and   
                 Haymo Kurz and   
                  Gabor Szekely   A computational model of intussusceptive
                                  microvascular growth and remodeling  . . 570--583
              D. Rios-Doria and   
                     G. Chowell   Qualitative analysis of the level of
                                  cross-protection between epidemic waves
                                  of the 1918--1919 influenza pandemic . . 584--592
                    Xin Liu and   
                     Ya-Pu Zhao   A scheme for multiple sequence alignment
                                  optimization --- an improvement based on
                                  family representative mechanics features 593--597
                 J. Schmitt and   
                     S. Bonnono   Dynamics and stability of lateral plane
                                  locomotion on inclines . . . . . . . . . 598--609
                C. A. Chung and   
                 Chih-Yuan Chen   The effect of cell sedimentation on
                                  measuring chondrocyte population
                                  migration using a Boyden chamber . . . . 610--625
            Matthew Thomson and   
             Jeremy Gunawardena   The rational parameterisation theorem
                                  for multisite post-translational
                                  modification systems . . . . . . . . . . 626--636
              Morry Silberstein   The cutaneous intrinsic visceral
                                  afferent nervous system: a new model for
                                  acupuncture analgesia  . . . . . . . . . 637--642
           V. R. Chechetkin and   
                   V. V. Lobzin   Local stability and evolution of the
                                  genetic code . . . . . . . . . . . . . . 643--653
                      Anonymous   Editorial Board  . . . . . . . . . . . . ifc--ifc
                      Anonymous   Pages 501--654 (21 December 2009)  . . . ??


Journal of Theoretical Biology
Volume 262, Number 2, January 21, 2010

                     Jinzhi Lei   Corrigendum to: ``Stochasticity in
                                  single gene expression with both
                                  intrinsic noise and fluctuation in
                                  kinetic parameters'' [J. Theor. Biol.
                                  \bf 256 (2009) 485--492] . . . . . . . . 381--381


Journal of Theoretical Biology
Volume 273, Number 1, March 21, 2011

                C. J. Evans and   
             R. M. Phillips and   
                P. F. Jones and   
              P. M. Loadman and   
              B. D. Sleeman and   
              C. J. Twelves and   
                     S. W. Smye   Corrigendum to ``A mathematical model of
                                  doxorubicin penetration through
                                  multicellular layers'' [J. Theor. Biol.
                                  \bf 257 (2009) 598--608] . . . . . . . . 235--235


Journal of Theoretical Biology
Volume 289, Number ??, November 21, 2011

              Liene Daukste and   
               Britta Basse and   
           Bruce C. Baguley and   
               David J. N. Wall   Corrigendum to ``Using a stem cell and
                                  progeny model to illustrate the
                                  relationship between cell cycle times of
                                  in vivo human tumour cell tissue
                                  populations, in vitro primary cultures
                                  and the cell lines derived from them''
                                  [J. Theor. Biol. \bf 260 (2009)
                                  563--571]  . . . . . . . . . . . . . . . 269--269


Journal of Theoretical Biology
Volume 297, Number ??, March 21, 2012

                Ha Youn Lee and   
            Elena E. Giorgi and   
           Brandon F. Keele and   
              Brian Gaschen and   
        Gayathri S. Athreya and   
  Jesus F. Salazar-Gonzalez and   
              Kimmy T. Pham and   
           Paul A. Goepfert and   
           J. Michael Kilby and   
            Michael S. Saag and   
            Eric L. Delwart and   
           Michael P. Busch and   
           Beatrice H. Hahn and   
             George M. Shaw and   
            Bette T. Korber and   
        Tanmoy Bhattacharya and   
               Alan S. Perelson   Corrigendum to ``Modeling sequence
                                  evolution in acute HIV-1 infection'' [J.
                                  Theor. Biol. \bf 261 (2009) 341--360]    187--187


Journal of Theoretical Biology
Volume 303, Number ??, June 21, 2012

                 Cenk Sumen and   
           Timothy E. Reddy and   
              Mark S. Alber and   
                   Peter P. Lee   Corrigendum to: ``Agent-based modeling
                                  of the context dependency in T cell
                                  recognition'' [J. Theor. Biol. \bf 236
                                  (2005) 376--391] . . . . . . . . . . . . 152--153


Journal of Theoretical Biology
Volume 313, Number ??, November 21, 2012

              Zhongxing Mai and   
                     Haiyan Liu   Corrigendum to ``Boolean network-based
                                  analysis of the apoptosis network:
                                  Irreversible apoptosis and stable
                                  surviving'' [J. Theor. Biol. \bf 259 (4)
                                  (2009) 760--769] . . . . . . . . . . . . 217--217