Last update:
Wed Apr 23 15:56:16 MDT 2025
Muhammad Adnan and
Alex Singleton and
Paul Longley \pkgOACoder: Postcode Coding Tool . . . e5
Luis Pedro Coelho \pkgMahotas: Open source software for
scriptable computer vision . . . . . . . e3
Sergey Fomel and
Paul Sava and
Ioan Vlad and
Yang Liu and
Vladimir Bashkardin \pkgMadagascar: open-source software
project for multidimensional data
analysis and reproducible computational
experiments . . . . . . . . . . . . . . e8
Daniel Graziotin and
Pekka Abrahamsson A Web-based modeling tool for the SEMAT
Essence theory of software engineering e4
Derek Groen and
Steven Rieder and
Simon Portegies Zwart \pkgMPWide: a light-weight library for
efficient message passing over wide area
networks . . . . . . . . . . . . . . . . e9
Laura Luyten and
Frederik Van Cappellen \pkgExpTimer: timer software to
facilitate complex, multi-step
procedures . . . . . . . . . . . . . . . e2
Sarunas Marciuska and
Pekka Abrahamsson \pkgFeature Usage Explorer: Usage
Monitoring and Visualization Tool in
HTML5 Based Applications . . . . . . . . e7
Konstantin Nikolic and
Joaquim Loizu \bionameDrosophila Photo-transduction
Simulator . . . . . . . . . . . . . . . e1
Thorsten Wagner and
Hans-Gerd Lipinski \pkgIJBlob: An ImageJ Library for
Connected Component Analysis and Shape
Analysis . . . . . . . . . . . . . . . . e6
Brian Blanton and
Chris Lenhardt A Scientist's Perspective on Sustainable
Scientific Software . . . . . . . . . . e17
Karl Broman Fourteen Years of \pkgR/qtl: Just Barely
Sustainable . . . . . . . . . . . . . . e11
Sou-Cheng Choi \pkgMINRES-QLP Pack and Reliable
Reproducible Research via Supportable
Scientific Software . . . . . . . . . . e22
Jeremy Cohen and
Chris Cantwell and
Neil Chue Hong and
David Moxey and
Malcolm Illingworth and
Andrew Turner and
John Darlington and
Spencer Sherwin Simplifying the Development, Use and
Sustainability of HPC Software . . . . . e16
Anshu Dubey and
Brian Van Straalen Experiences from Software Engineering of
Large Scale AMR Multiphysics Code
Frameworks . . . . . . . . . . . . . . . e7
Anshu Dubey and
Steve Brandt and
Richard Brower and
Merle Giles and
Paul Hovland and
Donald Lamb and
Frank Löffler and
Boyana Norris and
Brian O'Shea and
Claudio Rebbi and
Marc Snir and
Rajeev Thakur and
Petros Tzeferacos Software Abstractions and Methodologies
for HPC Simulation Codes on Future
Architectures . . . . . . . . . . . . . e14
Matthew Forster and
Lyn Paterson and
Robert Forster \pkgLIIS: A web-based system for culture
collections and sample annotation . . . e2
Derek Gaston and
John Peterson and
Cody Permann and
David Andrs and
Andrew Slaughter and
Jason Miller Continuous Integration for Concurrent
Computational Framework and Application
Development . . . . . . . . . . . . . . e10
Jeffrey Girard \pkgCARMA: Software for Continuous
Affect Rating and Media Annotation . . . e5
Abhisek Hazra \pkgImage Enhancer: A Graphic Editor to
Apply Numerous Effects in Digital Image e31
Adam Hughes \pkgpyparty: Intuitive Particle
Processing in Python . . . . . . . . . . e26
Sebastian Illing and
Christopher Kadow and
Kunst Oliver and
Ulrich Cubasch \pkgMurCSS: A Tool for Standardized
Evaluation of Decadal Hindcast Systems e24
Christian Jacobs and
Alexandros Avdis and
Gerard Gorman and
Matthew Piggott \pkgPyRDM: A Python-based library for
automating the management and online
publication of scientific software and
data . . . . . . . . . . . . . . . . . . e28
Martin Jucker Scientific Visualisation of Atmospheric
Data with \pkgParaView . . . . . . . . . e4
Daniel Katz and
David Proctor A Framework for Discussing e-Research
Infrastructure Sustainability . . . . . e13
Daniel Katz and
Sou-Cheng Choi and
Hilmar Lapp and
Ketan Maheshwari and
Frank Löffler and
Matthew Turk and
Marcus Hanwell and
Nancy Wilkins-Diehr and
James Hetherington and
James Howison and
Shel Swenson and
Gabrielle Allen and
Anne Elster and
Bruce Berriman and
Colin Venters Summary of the First Workshop on
Sustainable Software for Science:
Practice and Experiences (WSSSPE1) . . . e6
Daniel Katz Transitive Credit as a Means to Address
Social and Technological Concerns
Stemming from Citation and Attribution
of Digital Products . . . . . . . . . . e20
W Lenhardt and
Stanley Ahalt and
Brian Blanton and
Laura Christopherson and
Ray Idaszak Data Management Lifecycle and Software
Lifecycle Management in the Context of
Conducting Science . . . . . . . . . . . e15
Frank Löffler and
Steven Brandt and
Gabrielle Allen and
Erik Schnetter \pkgCactus: Issues for Sustainable
Simulation Software . . . . . . . . . . e12
Saundra Manning and
Lior Shamir \pkgCHLOE: A Software Tool for Automatic
Novelty Detection in Microscopy Image
Datasets . . . . . . . . . . . . . . . . e25
Reagan Moore and
Arcot Rajasekar and
Hao Xu Extensible Generic Data Management
Software . . . . . . . . . . . . . . . . e9
Shane Mueller and
Alena Esposito Computerized Testing Software for
Assessing Interference Suppression in
Children and Adults: The Bivalent Shape
Task (BST) . . . . . . . . . . . . . . . e3
Nicola Osborne and
George Hamilton and
Stuart Macdonald Historical Post Office Directory Parser
(POD Parser) Software From the
AddressingHistory Project . . . . . . . e23
Christian Oxvig and
Patrick Pedersen and
Thomas Arildsen and
Jan Òstergaard and
Torben Larsen \pkgMagni: A Python Package for
Compressive Sampling and Reconstruction
of Atomic Force Microscopy Images . . . e29
Nial Peters \pkgAvoPlot: An extensible scientific
plotting tool based on \pkgmatplotlib e1
Ikaro Silva and
George Moody An Open-source Toolbox for Analysing and
Processing \pkgPhysioNet Databases in
MATLAB and Octave . . . . . . . . . . . e27
Victoria Stodden and
Sheila Miguez Best Practices for Computational
Science: Software Infrastructure and
Environments for Reproducible and
Extensible Research . . . . . . . . . . e21
William Thielicke and
Eize Stamhuis \pkgPIVlab --- Towards User-friendly,
Affordable and Accurate Digital Particle
Image Velocimetry in MATLAB . . . . . . e30
Erik Trainer and
Chalalai Chaihirunkarn and
James Herbsleb The Big Effects of Short-term Efforts:
Mentorship and Code Integration in Open
Source Scientific Software . . . . . . . e18
Colin Venters and
Lydia Lau and
Michael Griffiths and
Violeta Holmes and
Rupert Ward and
Caroline Jay and
Charlie Dibsdale and
Jie Xu The Blind Men and the Elephant: Towards
an Empirical Evaluation Framework for
Software Sustainability . . . . . . . . e8
Lynn Zentner and
Michael Zentner and
Victoria Farnsworth and
Michael McLennan and
Krishna Madhavan and
Gerhard Klimeck \tt nanoHUB.org: Experiences and
Challenges in Software Sustainability
for a Large Scientific Community . . . . e19
Alice Allen and
Judy Schmidt Looking before Leaping: Creating a
Software Registry . . . . . . . . . . . e15
Megan Argo The \pkge-MERLIN Data Reduction Pipeline e2
Iain Bethune and
Yves Gallot \pkgGenefer: Programs for Finding Large
Probable Generalized Fermat Primes . . . e10
Carl Boettiger and
Scott Chamberlain and
Edmund Hart and
Karthik Ram Building Software, Building Community:
Lessons from the \pkgrOpenSci Project e8
Edem Dovlo and
Natalie Baddour Toolbox for the Computation of $2$D
Fourier Transforms in Polar Coordinates
via Maple . . . . . . . . . . . . . . . e3
Robert R. Downs and
W. Christopher Lenhardt and
Erin Robinson and
Ethan Davis and
Nicholas Weber Community Recommendations for
Sustainable Scientific Software . . . . e11
Morteza Haeri and
Mohammad Haeri ImageJ Plugin for Analysis of Porous
Scaffolds used in Tissue Engineering . . e1
Adam Hughes and
Zhaowen Liu and
M. Reeves \pkgScikit-spectra: Explorative
Spectroscopy in Python . . . . . . . . . e6
Daniel S. Katz and
Arfon M. Smith Transitive Credit and \pkgJSON-LD . . . e7
Marlon E. Pierce and
Suresh Marru and
Chris Mattmann Patching It Up, Pulling It Forward . . . e12
Andrew E. Slaughter and
John W. Peterson and
Derek R. Gaston and
Cody J. Permann and
David Andrs and
Jason M. Miller Continuous Integration for Concurrent
MOOSE Framework and Application
Development on GitHub . . . . . . . . . e14
J. S. Spencer and
N. S. Blunt and
W. A. Vigor and
Fionn D. Malone and
W. M. C. Foulkes and
James J. Shepherd and
A. J. W. Thom Open-Source Development Experiences in
Scientific Software: The HANDE Quantum
Monte Carlo Project . . . . . . . . . . e9
James Stone and
John Towse A Working Memory Test Battery:
Java-Based Collection of Seven Working
Memory Tasks . . . . . . . . . . . . . . e5
Isuru Suriarachchi and
Quan Zhou and
Beth Plale \pkgKomadu: A Capture and Visualization
System for Scientific Data Provenance e4
John G. Wright and
B. Sriram Shastry \pkgDiracQ: A Package for Algebraic
Manipulation of Non-Commuting Quantum
Variables . . . . . . . . . . . . . . . e13
Ayala Allon and
Roy Luria \pkgprepdat --- An R Package for
Preparing Experimental Data for
Statistical Analysis . . . . . . . . . . e43
Christopher Beckham and
Mark Hall and
Eibe Frank \pkgWekaPyScript: Classification,
Regression, and Filter Schemes for WEKA
Implemented in Python . . . . . . . . . e33
Nathan Bryant and
Jeremy Wildfire \pkgWebcharts --- A Web-based Charting
Library for Custom Interactive Data
Visualization . . . . . . . . . . . . . e29
Michael Crusoe and
C. Brown Channeling Community Contributions to
Scientific Software: A Sprint Experience e27
Michael Crusoe and
C. Brown Walking the Talk: Adopting and Adapting
Sustainable Scientific Software
Development processes in a Small Biology
Lab . . . . . . . . . . . . . . . . . . e44
Adrian Daerr and
Adrien Mogne \pkgPendent\_Drop: An ImageJ Plugin to
Measure the Surface Tension from an
Image of a Pendent Drop . . . . . . . . e3
Andrew Dawson \pkgeofs: A Library for EOF Analysis of
Meteorological, Oceanographic, and
Climate Data . . . . . . . . . . . . . . e14
Andrew Dawson \pkgWindspharm: A High-Level Library for
Global Wind Field Computations Using
Spherical Harmonics . . . . . . . . . . e31
Josselin Defrance and
Caroline Lema\^\itre and
Rabih Ajib and
Jessica Benedicto and
Emilien Mallet and
Rémi Poll\`es and
Jean-Pierre Plumey and
Martine Mihailovic and
Emmanuel Centeno and
Cristian Cirac\`\i and
David Smith and
Antoine Moreau \pkgMoosh: A Numerical Swiss Army Knife
for the Optics of Multilayers in
Octave/Matlab . . . . . . . . . . . . . e13
Andrés Demski and
Mariano Llamedo Soria \pkgecg-kit: a Matlab Toolbox for
Cardiovascular Signal Processing . . . . e8
Nuno Fachada and
Vitor Lopes and
Rui Martins and
Agostinho Rosa PerfAndPubTools --- Tools for Software
Performance Analysis and Publishing of
Results . . . . . . . . . . . . . . . . e18
Nuno Fachada and
Vitor Lopes and
Rui Martins and
Agostinho Rosa SimOutUtils --- Utilities for Analyzing
Time Series Simulation Output . . . . . e38
Damien Farrell \pkgDataExplore: An Application for
General Data Analysis in Research and
Education . . . . . . . . . . . . . . . e9
Daniel P. Foose and
Ioana E. P. Sizemore \pkgVespucci: A Free, Cross-Platform
Tool for Spectroscopic Data Analysis and
Imaging . . . . . . . . . . . . . . . . e4
James Gebbie-Rayet and
Gareth Shannon and
Hannes H. Loeffler and
Charles A. Laughton \pkgLongbow: A Lightweight Remote Job
Submission Tool . . . . . . . . . . . . e1
Henrich Glaser-Opitz and
Kristína Budajová \pkgMATH: A Scientific Tool for
Numerical Methods Calculation and
Visualization . . . . . . . . . . . . . e6
Paul Govan \pkgeAnalytics: Dynamic Web-based
Analytics for the Energy Industry . . . e45
Mads Hansen \pkgPyVDT: A PsychoPy-Based Visual
Sequence Detection Task . . . . . . . . e22
Jonathan Helmus and
Scott Collis The Python ARM Radar Toolkit
(\pkgPy-ART), a Library for Working with
Weather Radar Data in the Python
Programming Language . . . . . . . . . . e25
Brett Hewitt and
Moi Hoon Yap and
Robyn Grant Manual Whisker Annotator (MWA): A
Modular Open-Source Tool . . . . . . . . e16
Shuai Huang and
Yaqiang Wang and
Yuanli Xie and
Peng Zhao and
Johannes Lüers \pkgOutlierFlag: A Tool for Scientific
Data Quality Control by Outlier Data
Flagging . . . . . . . . . . . . . . . . e20
Sebastian Illing and
Christopher Kadow and
Oliver Kunst and
Ulrich Cubasch Correction: \pkgMurCSS: A Tool for
Standardized Evaluation of Decadal
Hindcast Systems . . . . . . . . . . . . e24
Daniel S. Katz and
Sou-Cheng T. Choi and
Nancy Wilkins-Diehr and
Neil Chue Hong and
Colin C. Venters and
James Howison and
Frank Seinstra and
Matthew Jones and
Karen A. Cranston and
Thomas L. Clune and
Miguel de Val-Borro and
Richard Littauer Report on the Second Workshop on
Sustainable Software for Science:
Practice and Experiences (WSSSPE2) . . . e7
Daniel Katz and
Sou-Cheng Choi and
Kyle Niemeyer and
James Hetherington and
Frank Löffler and
Dan Gunter and
Ray Idaszak and
Steven Brandt and
Mark Miller and
Sandra Gessing and
Nick Jones and
Nic Weber and
Suresh Marru and
Gabrielle Allen and
Birgit Penzenstadler and
Colin Venters and
Ethan Davis and
Lorraine Hwang and
Ilian Todorov and
Abani Patra and
Miguel de Val-Borro Report on the Third Workshop on
Sustainable Software for Science:
Practice and Experiences (WSSSPE3) . . . e37
Jared Kibele Benthic Photo Survey: Software for
Geotagging, Depth-tagging, and
Classifying Photos from Survey Data and
Producing Shapefiles for Habitat Mapping
in GIS . . . . . . . . . . . . . . . . . e10
Vincent Knight and
Owen Campbell and
Marc Harper and
Karol Langner and
James Campbell and
Thomas Campbell and
Alex Carney and
Martin Chorley and
Cameron Davidson-Pilon and
Kristian Glass and
Nikoleta Glynatsi and
Tomás Ehrlich and
Martin Jones and
Georgios Koutsovoulos and
Holly Tibble and
Jochen Müller and
Geraint Palmer and
Piotr Petunov and
Paul Slavin and
Timothy Standen and
Luis Visintini and
Karl Molden An Open Framework for the Reproducible
Study of the Iterated Prisoner's Dilemma e35
Anton Korosov and
Morten Hansen and
Knut-Frode Dagestad and
Asuka Yamakawa and
Aleksander Vines and
Maik Riechert \pkgNansat: a Scientist-Orientated
Python Package for Geospatial Data
Processing . . . . . . . . . . . . . . . e39
Nir Krakauer \pkgSeFo: A Package for Generating
Probabilistic Forecasts from NMME
Predictive Ensembles . . . . . . . . . . e19
Alastair Lansley and
Peter Vamplew and
Philip Smith and
Cameron Foale \pkgCaliko: An Inverse Kinematics
Software Library Implementation of the
FABRIK Algorithm . . . . . . . . . . . . e36
Bryan Lougheed and
Stephen Obrochta \pkgMatCal: Open Source Bayesian
$^{14}$C Age Calibration in Matlab . . . e42
Thor Markussen \pkgParchar --- Characterization of
Suspended Particles Through Image
Processing in Matlab . . . . . . . . . . e26
Yosef Meller and
Alex Liberzon Particle Data Management Software for
$3$D Particle Tracking Velocimetry and
Related Applications --- The
\pkgFlowtracks Package . . . . . . . . . e23
Joris Meurs Flow Rates in Liquid Chromatography, Gas
Chromatography and Supercritical Fluid
Chromatography: A Tool for Optimization e32
Birgit Möller and
Markus Glaß and
Danny Misiak and
Stefan Posch MiToBo --- A Toolbox for Image
Processing and Analysis . . . . . . . . e17
Akio Onogi and
Hiroyoshi Iwata \pkgVIGoR: Variational Bayesian
Inference for Genome-Wide Regression . . e11
Matti Pastell CowLog --- Cross-Platform Application
for Coding Behaviours from Video . . . . e15
Fabio Pavesi and
Anna Basoni and
Cristiano Fugazza and
Stefano Menegon and
Alessandro Oggioni and
Monica Pepe and
Paolo Tagliolato and
Paola Carrara EDI --- A Template-Driven Metadata
Editor for Research Data . . . . . . . . e40
Philip Rinn and
Pedro Lind and
Matthias Wächter and
Joachim Peinke The Langevin Approach: An R Package for
Modeling Markov Processes . . . . . . . e34
Abel Soares Siqueira and
Raniere Costa da Silva and
Luiz-Rafael Santos \pkgPerprof-py: A Python Package for
Performance Profile of Mathematical
Optimization Software . . . . . . . . . e12
Andy Stock Open Source Software for Mapping Human
Impacts on Marine Ecosystems with an
Additive Model . . . . . . . . . . . . . e21
Maarten van Gompel and
Antal van den Bosch Efficient $n$-gram, Skipgram and
Flexgram Modelling with \pkgColibri Core e30
Mark Vousden and
Marc-Antonio Bisotti and
Maximilian Albert and
Hans Fangohr Virtual Micromagnetics: A Framework for
Accessible and Reproducible
Micromagnetic Simulation . . . . . . . . e41
Bas Wijnen and
Gerald C. Anzalone and
Amberlee S. Haselhuhn and
P. G. Sanders and
Joshua M. Pearce Free and Open-source Control Software
for $3$-D Motion and Processing . . . . e2
Hang Xiong and
Pin Xiong and
Hui Xiong \pkgKAMG: A Tool for Converting Blood
Ties and Affinity Ties into Adjacency
Matrices . . . . . . . . . . . . . . . . e28
Fabian Zeitvogel and
Martin Obst \pkgScatterJn: An ImageJ Plugin for
Scatterplot-Matrix Analysis and
Classification of Spatially Resolved
Analytical Microscopy Data . . . . . . . e5
Richard Otis and
Zi-Kui Liu \pkgpycalphad: CALPHAD-based
Computational Thermodynamics in Python 1
Mark Heckmann and
Lukas Burk \pkgGridsampler --- A Simulation Tool to
Determine the Required Sample Size for
Repertory Grid Studies . . . . . . . . . 2
Pierre de Buyl and
Mu-Jie Huang and
Laurens Deprez \pkgRMPCDMD: Simulations of Colloids
with Coarse-grained Hydrodynamics,
Chemical Reactions and External Fields 3
Natalie Baddour and
Ugo Chouinard Matlab Code for the Discrete Hankel
Transform . . . . . . . . . . . . . . . 4
Willem Eerland and
Simon Box and
András Sóbester Cambridge Rocketry Simulator --- A
Stochastic Six-Degrees-of-Freedom Rocket
Flight Simulator . . . . . . . . . . . . 5
Yves Bas and
Didier Bas and
Jean-François Julien \pkgTadarida: A Toolbox for Animal
Detection on Acoustic Recordings . . . . 6
Stefan Posch and
Birgit Moeller \pkgAlida --- Advanced Library for
Integrated Development of Data Analysis
Applications . . . . . . . . . . . . . . 7
Scott A. Sarra The Matlab Radial Basis Function Toolbox 8
François Nedelec \pkgpreconfig: A Versatile Configuration
File Generator for Varying Parameters 9
Stephan Hoyer and
Joe Hamman \pkgxarray: $N$-$D$ labeled Arrays and
Datasets in Python . . . . . . . . . . . 10
Qingzhao Yu and
Bin Li \pkgmma: An R Package for Mediation
Analysis with Multiple Mediators . . . . 11
Robert Dahl Jacobsen and
Morten Nielsen and
Morten Grud Rasmussen Generalized Sampling in Julia . . . . . 12
Michail Alvanos and
Theodoros Christoudias \pkgMEDINA: MECCA Development in
Accelerators --- KPP Fortran to CUDA
source-to-source Pre-processor . . . . . 13
Willem Eerland and
Simon Box and
Hans Fangohr and
András Sóbester \pkgTeetool --- a probabilistic
trajectory analysis tool . . . . . . . . 14
Christopher Rackauckas and
Qing Nie \pkgDifferentialEquations.jl --- A
Performant and Feature-Rich Ecosystem
for Solving Differential Equations in
Julia . . . . . . . . . . . . . . . . . 15
Micha\l Ptaszy\'nski and
Pawe\l Dybala and
Rafa\l Rzepka and
Kenji Araki and
Fumito Masui \pkgML-Ask: Open Source Affect Analysis
Software for Textual Input in Japanese 16
Alexandra K. Diem and
Neil W. Bressloff \pkgVaMpy: A Python Package to Solve
$1$D Blood Flow Problems . . . . . . . . 17
Martin C. Roberge and
Michael P. McGuire and
Jie Lian \pkgHydroCloud: A Web Application for
Exploring Stream Gage Data . . . . . . . 18
Mohammad N. Elnesr and
A. A. Alazba \pkgNeuroCharter: A Neural Networks
Software to Visually Discover the
Effects and Contributions between
Interrelated Features . . . . . . . . . 19
Foo Cheung and
Giovanna Fantoni and
Maria Conner and
Brian A. Sellers and
Yuri Kotliarov and
Julián Candia and
Katherine Stagliano and
Angélique Biancotto Web Tool for Navigating and Plotting
SomaLogic ADAT Files . . . . . . . . . . 20
Xinya Li and
Chris R. Vernon and
Mohamad I. Hejazi and
Robert P. Link and
Leyang Feng and
Yaling Liu and
Lynn T. Rauchenstein \pkgXanthos --- A Global Hydrologic
Model . . . . . . . . . . . . . . . . . 21
Ryan Henderson and
Rasmus Rothe \pkgPicasso: A Modular Framework for
Visualizing the Learning Process of
Neural Network Image Classifiers . . . . 22
Daniel A. Wagenaar \pkgVScope --- Data Acquisition and
Analysis for Voltage-sensitive Dye
Imaging Using Multiple Cameras and
Electrophysiology . . . . . . . . . . . 23
Matthew S. Gillman \pkgGENESIS --- The GENEric SImulation
System for Modelling State Transitions 24
Gray Kimbrough \pkgATUS-Commuting: Stata Code to
Calculate Commuting Time in the American
Time Use Survey . . . . . . . . . . . . 25
Julia Damerow and
B. R. Erick Peirson and
Manfred D. Laubichler The Giles Ecosystem --- Storage, Text
Extraction, and OCR of Documents . . . . 26
Dzhoshkun Ismail Shakir and
Luis Carlos García-Peraza-Herrera and
Pankaj Daga and
Tom Doel and
Matthew J. Clarkson and
Sébastien Ourselin and
Tom Vercauteren \pkgGIFT-Grab: Real-time C++ and Python
multi-channel video capture, processing
and encoding API . . . . . . . . . . . . 27
Tom Lawton DSCImageCalc --- Software for
Determining Similarity Coefficients for
the Analysis of Image Segmentations . . 28
Tianshu Liu \pkgOpenOpticalFlow: An Open Source
Program for Extraction of Velocity
Fields from Flow Visualization Images 29
Luis Pedro Coelho \pkgJug: Software for Parallel
Reproducible Computation in Python . . . 30
Aidan O'Mara and
Anna E. King and
James C. Vickers and
Matthew T. K. Kirkcaldie \pkgImageSURF: An ImageJ Plugin for
Batch Pixel-Based Image Segmentation
Using Random Forests . . . . . . . . . . 31
Tom Crick and
Benjamin Hall and
Samin Ishtiaq Reproducibility in Research: Systems,
Infrastructure, Culture . . . . . . . . 32
Inga Schwabe \pkgBayesTwin: An R Package for Bayesian
Inference of Item-Level Twin Data . . . 33
Xavier Barbeau and
Antony T. Vincent and
Patrick Lagüe \pkgConfBuster: Open-Source Tools for
Macrocycle Conformational Search and
Analysis . . . . . . . . . . . . . . . . 1
Pablo Saavedra and
Clemens Simmer An Octave/MATLAB\reg Interface for Rapid
Processing of SMOS L1C Full Polarization
Brightness Temperature . . . . . . . . . 2
Roger Fenn and
Ansgar Wenzel Quandle and Biquandle Homology
Calculation in R . . . . . . . . . . . . 3
Thomas Brown and
Jonas Hörsch and
David Schlachtberger \pkgPyPSA: Python for Power System
Analysis . . . . . . . . . . . . . . . . 4
William Griffin \pkgpyObs: Open-Source Software for
Computer-Assisted Behavioral Observation
Coding . . . . . . . . . . . . . . . . . 5
Sivananda Rajananda and
Hakwan Lau and
Brian Odegaard A Random-Dot Kinematogram for Web-Based
Vision Research . . . . . . . . . . . . 6
Maxwell Grady and
Zhongwei Dai and
Karsten Pohl \pkgPLEASE: The Python Low-energy
Electron Analysis SuitE --- Enabling
Rapid Analysis of LEEM and LEED Data . . 7
Michael Schoeffler and
Sarah Bartoschek and
Fabian-Robert Stöter and
Marlene Roess and
Susanne Westphal and
Bernd Edler and
Jürgen Herre webMUSHRA --- A Comprehensive Framework
for Web-based Listening Tests . . . . . 8
Xinya Li and
Chris R. Vernon and
Mohamad I. Hejazi and
Robert P. Link and
Zhongwei Huang and
Lu Liu and
Leyang Feng \pkgTethys --- A Python Package for
Spatial and Temporal Downscaling of
Global Water Withdrawals . . . . . . . . 9
Daniel S. Katz and
Kyle E. Niemeyer and
Sandra Gesing and
Lorraine Hwang and
Wolfgang Bangerth and
Simon Hettrick and
Ray Idaszak and
Jean Salac and
Neil Chue Hong and
Santiago Núñez-Corrales and
Alice Allen and
R. Stuart Geiger and
Jonah Miller and
Emily Chen and
Anshu Dubey and
Patricia Lago Fourth Workshop on Sustainable Software
for Science: Practice and Experiences
(WSSSPE4) . . . . . . . . . . . . . . . 10
Ulrich Matter \pkgRWebData: A High-Level Interface to
the Programmable Web . . . . . . . . . . 11
Daniel Michelson and
Anders Henja and
Sander Ernes and
Günther Haase and
Jarmo Koistinen and
Katarzyna O'sródka and
Tuomas Peltonen and
Maciej Szewczykowski and
Jan Szturc BALTRAD Advanced Weather Radar
Networking . . . . . . . . . . . . . . . 12
Daniel Leightley and
Jo-Anne Puddephatt and
Laura Goodwin and
Roberto Rona and
Nicola T. Fear \pkgInDEx: Open Source iOS and Android
Software for Self-Reporting and
Monitoring of Alcohol Consumption . . . 13
Nina Heck and
Moritz Schubotz DiViDu --- An Open Source Solution for
Dual Task Experiments with Integrated
Divided Visual Field Paradigm . . . . . 14
Chris R. Vernon and
Yannick Le Page and
Min Chen and
Maoyi Huang and
Katherine V. Calvin and
Ian P. Kraucunas and
Caleb J. Braun \pkgDemeter --- A Land Use and Land
Cover Change Disaggregation Model . . . 15
Pete Richard Jones \pkgMyex: A MATLAB Interface for the
Tobii Eyex Eye-Tracker . . . . . . . . . 16
Jonathan Petticrew and
Simon Dimler and
Jo Shien Ng Simple Monte Carlo Simulator for
Modelling Linear Mode and Geiger Mode
Avalanche Photodiodes in C++ . . . . . . 17
Helga Tauscher \pkgBillie. A Prototypical Framework for
Building Information Model Visualization 18
Henrik Nygård and
Ciarán Murray and
Jesper H. Andersen and
Georg Martin and
Kaire Torn and
Samuli Korpinen \pkgBEAT 3.0 --- a Tool for Integrated
Biodiversity Assessments . . . . . . . . 19
Chris R. Vernon and
Nino Zuljevic and
Jennie S. Rice and
Timothy E. Seiple and
Michael C. W. Kintner-Meyer and
Nathalie Voisin and
Ian P. Kraucunas and
Jin Chunlian and
Jarrod Olson and
Laurel Schmidt and
Scott L. Morris and
Pralit Patel \pkgCERF --- A Geospatial Model for
Assessing Future Energy Production
Technology Expansion Feasibility . . . . 20
Rubens Flam-Shepherd and
Dev T. Britto and
Herbert J. Kronzucker \pkgvaCATE: A Platform for Automating
Data Output from Compartmental Analysis
by Tracer Efflux . . . . . . . . . . . . 21
Marc-Antonio Bisotti and
David Cortés-Ortuño and
Ryan Pepper and
Weiwei Wang and
Marijan Beg and
Thomas Kluyver and
Hans Fangohr \pkgFidimag --- A Finite Difference
Atomistic and Micromagnetic Simulation
Package . . . . . . . . . . . . . . . . 22
Chris R. Vernon and
Mohamad I. Hejazi and
Sean W. D. Turner and
Yaling Liu and
Caleb J. Braun and
Xinya Li and
Robert P. Link A Global Hydrologic Framework to
Accelerate Scientific Discovery . . . . 1
Michael Slugocki and
Allison B. Sekuler and
Patrick Bennett \pkgBayesFit: a tool for modeling
psychophysical data using Bayesian
inference . . . . . . . . . . . . . . . 2
Edward D. Lee and
Bryan C. Daniels Convenient Interface to Inverse Ising
(ConIII): a Python 3 Package for Solving
Ising-Type Maximum Entropy Models . . . 3
Christine Harvey and
R. S. Weigel \pkgTransplant2Mongo: Python Scripts
that Insert Organ Procurement and
Transplantation Network (OPTN) Data in
MongoDB . . . . . . . . . . . . . . . . 5
Ben Bond-Lamberty and
Kalyn Dorheim and
Ryna Cui and
Russell Horowitz and
Abigail Snyder and
Katherine Calvin and
Leyang Feng and
Rachel Hoesly and
Jill Horing and
G. Page Kyle and
Robert Link and
Pralit Patel and
Christopher Roney and
Aaron Staniszewski and
Sean Turner and
Min Chen and
Felip Feijoo and
Corinne Hartin and
Mohamad Hejazi and
Gokul Iyer and
Sonny Kim and
Yaling Liu and
Cary Lynch and
Haewon McJeon and
Steven Smith and
Stephanie Waldhoff and
Marshall Wise and
Leon Clarke \geonamegcamdata: an R Package for
Preparation, Synthesis, and Tracking of
Input Data for the GCAM Integrated
Human--Earth Systems Model . . . . . . . 6
Kristoffer Carlsson and
Fredrik Ekre \pkgTensors.jl --- Tensor Computations
in Julia . . . . . . . . . . . . . . . . 7
Sean A. Fulop and
Hannah Scott Vowel System Sandbox: Complex System
Modelling of Language Change . . . . . . 8
Pierre Augier and
Ashwin Vishnu Mohanan and
Cyrille Bonamy \pkgFluidDyn: a Python Open-Source
Framework for Research and Teaching in
Fluid Dynamics by Simulations,
Experiments and Data Processing . . . . 9
Ashwin Vishnu Mohanan and
Cyrille Bonamy and
Pierre Augier \pkgFluidFFT: Common API (C++ and
Python) for Fast Fourier Transform HPC
Libraries . . . . . . . . . . . . . . . 10
Paul Walker and
Ulrich Krohn and
David Carty \pkgARBTools: a Tricubic Spline
Interpolator for Three-Dimensional
Scalar or Vector Fields . . . . . . . . 12
Zhangqi Chen and
Qiaofu Zhang and
Ji-Cheng Zhao \pkgpydiffusion: a Python Library for
Diffusion Simulation and Data Analysis 13
Ashwin Vishnu Mohanan and
Cyrille Bonamy and
Miguel Calpe Linares and
Pierre Augier \pkgFluidSim: Modular, Object-Oriented
Python Package for High-Performance CFD
Simulations . . . . . . . . . . . . . . 14
Paul F. Petrowski and
Elizabeth G. King and
Timothy M. Beissinger An R Framework for the Partitioning of
Linkage Disequilibrium between and
Within Populations . . . . . . . . . . . 15
Will Usher and
Tom Russell A Software Framework for the Integration
of Infrastructure Simulation Models . . 16
Heidi Seibold and
Achim Zeileis and
Torsten Hothorn \pkgmodel4you: an R Package for
Personalised Treatment Effect Estimation 17
Hagen Radtke and
Florian Börgel and
Sandra-Esther Brunnabend and
Anja Eggert and
Madline Kniebusch and
H. E. Markus Meier and
Daniel Neumann and
Thomas Neumann and
Manja Placke \pkgValidator --- a Web-Based
Interactive Tool for Validation of Ocean
Models at Oceanographic Stations . . . . 18
Markus Quade and
Julien Gout and
Markus Abel \pkgGlyph: Symbolic Regression Tools . . 19
Johannes Brenner and
Guilio Genova and
Giacomo Bertoldi and
Georg Niedrist and
Stefano Della Chiesa \pkgSWCalibrateR: Interactive, Web-Based
Calibration of Soil Moisture Sensors . . 20
Y. Q. Wang An Open Source Software Suite for
Multi-Dimensional Meteorological Data
Computation and Visualisation . . . . . 21
Thomas B. Wild and
Daniel P. Loucks and
George W. Annandale \pkgSedSim: a River Basin Simulation
Screening Model for Reservoir Management
of Sediment, Water, and Hydropower . . . 22
Michael Clerx and
Martin Robinson and
Ben Lambert and
Chon Lok Lei and
Sanmitra Ghosh and
Gary R. Mirams and
David J. Gavaghan Probabilistic Inference on Noisy Time
Series (PINTS) . . . . . . . . . . . . . 23
Abdelrahman Abouali and
Domingos Xavier Viegas \pkgFire ROS Calculator: a Tool to
Measure the Rate of Spread of a
Propagating Wildfire in a Laboratory
Setting . . . . . . . . . . . . . . . . 24
Julian Stieg and
Peter Marks and
Lasse Gerrits \pkgUN-CODE: Software for Structuring
and Visualizing Collective
Decision-Making Based on Qualitative
Data . . . . . . . . . . . . . . . . . . 25
Ewout van den Berg The Ocean Tensor Package . . . . . . . . 26
Jose Luis García del Castillo y López \pkgMachina.NET: a Library for
Programming and Real-Time Control of
Industrial Robots . . . . . . . . . . . 27
James F. Varner and
Noor Eldabagh and
Derek Volta and
Reem Eldabagh and
Jonathan J. Foley IV \pkgWPTherml: a Python Package for the
Design of Materials for Harnessing Heat 28
Daniel Wheeler and
Trevor Keller and
Stephen J. DeWitt and
Andrea M. Jokisaari and
Daniel Schwen and
Jonathan E. Guyer and
Larry K. Aagesen and
Olle G. Heinonen and
Michael R. Tonks and
Peter W. Voorhees and
James A. Warren \pkgPFHub: The Phase-Field Community Hub 29
Luuk Van Waes and
Mariëlle Leijten and
Tom Pauwaert and
Eric Van Horenbeeck A Multilingual Copy Task: Measuring
Typing and Motor Skills in Writing with
Inputlog . . . . . . . . . . . . . . . . 30
Katherine Calvin and
Robert Link and
Marshall Wise \pkggcamland v1.0 --- an R Package for
Modelling Land Use and Land Cover Change 31
Paul van Gent and
Haneen Farah and
Nicole van Nes and
Bart van Arem Analysing Noisy Driver Physiology
Real-Time Using Off-the-Shelf Sensors:
Heart Rate Analysis Software from the
Taking the Fast Lane Project . . . . . . 32
Lyndon White and
Roberto Togneri and
Wei Liu and
Mohammed Bennamoun \pkgDataDeps.jl: Repeatable Data Setup
for Reproducible Data Science . . . . . 33
Iain Emsley and
Torò Graven and
Nicola Bird and
Susan Griffiths and
Jessica Suess and
Lucy Shaw Please Touch the Art: Experiences in
Developing for the Visually Impaired . . 4
Daniel S. Katz and
Stephan Druskat and
Robert Haines and
Caroline Jay and
Alexander Struck The State of Sustainable Research
Software: Learning from the Workshop on
Sustainable Software for Science:
Practice and Experiences (WSSSPE5.1) . . 11
Alan V. Di Vittorio and
Chris R. Vernon and
Shijie Shu \pkgMoirai Version 3: a Data Processing
System to Generate Recent Historical
Land Inputs for Global Modeling
Applications at Various Scales . . . . . 1
Tobias Stål and
Anya M. Reading A Grid for Multidimensional and
Multivariate Spatial Representation and
Data Processing . . . . . . . . . . . . 2
V. Gonzalez-Perez and
P. Keil and
Y. Li and
A. Zülke and
R. Burrel and
D. Csala and
H. Hoster A Python Package to Preprocess the Data
Produced by Novonix High-Precision
Battery-Testers . . . . . . . . . . . . 3
Alexander Raß High Precision Particle Swarm
Optimization Algorithm (HiPPSO) . . . . 4
A. F. M. Kamal Chowdhury and
Jordan Kern and
Thanh Duc Dang and
Stefano Galelli \pkgPowNet: a Network-Constrained Unit
Commitment/Economic Dispatch Model for
Large-Scale Power Systems Analysis . . . 5
Foo Cheung and
The CHI Consortium A Figure One Web Tool for Visualization
of Experimental Designs . . . . . . . . 6
Hari Nandakumar and
Shailesh Srivastava \pkgABC-OCT --- a Cross-Platform
Implementation of Real-Time
Fourier-Domain Optical Coherence
Tomography . . . . . . . . . . . . . . . 7
Stephen Thompson and
Thomas Dowrick and
Goufang Xiao and
João Ramalhinho and
Maria Robu and
Mian Ahmad and
Dan Taylor and
Matthew J. Clarkson \pkgSnappySonic: an Ultrasound
Acquisition Replay Simulator . . . . . . 8
Kashif Shaad and
Howard Alt An Open Source Toolbox for Integrating
Freshwater Social-Ecological Indicators
in Basin Management . . . . . . . . . . 9
Zarrar Khan and
Thomas Wild and
Chris Vernon and
Andy Miller and
Mohamad Hejazi and
Leon Clarke and
Fernando Miralles-Wilhelm and
Raul Munoz Castillo and
Fekadu Moreda and
Julia Lacal Bereslawski and
Micaela Suriano and
Jose Casado \pkgMetis --- a Tool to Harmonize and
Analyze Multi-Sectoral Data and Linkages
at Variable Spatial Scales . . . . . . . 10
Robin A. Richardson and
David W. Wright and
Wouter Edeling and
Vytautas Jancauskas and
Jalal Lakhlili and
Peter V. Coveney \pkgEasyVVUQ: a Library for
Verification, Validation and Uncertainty
Quantification in High Performance
Computing . . . . . . . . . . . . . . . 11
Antonia Hadjimichael and
David Gold and
David Hadka and
Patrick Reed \pkgRhodium: Python Library for
Many-Objective Robust Decision Making
and Exploratory Modeling . . . . . . . . 12
Martin Rabe \pkgSpectram: a MATLAB\reg and GNU
Octave Toolbox for Transition Model
Guided Deconvolution of Dynamic
Spectroscopic Data . . . . . . . . . . . 13
Riko Kelter \pkgbayest: an R Package for Effect-Size
Targeted Bayesian Two-Sample $t$-Tests 14
K. E. Kaiser and
A. N. Flores and
C. R. Vernon \pkgJanus: a Python Package for
Agent-Based Modeling of Land Use and
Land Cover Change . . . . . . . . . . . 15
Jagir R. Hussan and
Peter J. Hunter \pkgComfort Simulator: a Software Tool
to Model Thermoregulation and Perception
of Comfort . . . . . . . . . . . . . . . 16
Gabriele Gentile \pkgCURSAT ver. 2.1: a Simple,
Resampling-Based, Program to Generate
Pseudoreplicates of Data and Calculate
Rarefaction Curves . . . . . . . . . . . 17
Adam Pluta and
Ontje Lünsdorf \pkgesy-osmfilter --- a Python Library
to Efficiently Extract OpenStreetMap
Data . . . . . . . . . . . . . . . . . . 19
Robert Jackson and
Scott Collis and
Timothy Lang and
Corey Potvin and
Todd Munson \pkgPyDDA: a Pythonic Direct Data
Assimilation Framework for Wind
Retrievals . . . . . . . . . . . . . . . 20
Marc Lavielle and
Philip D. Waggoner Exploring and Comparing Unsupervised
Clustering Algorithms . . . . . . . . . 21
Paige Fisher and
Wentao Cao and
Qingzhao Yu Using SAS Macros for Multiple Mediation
Analysis in R . . . . . . . . . . . . . 22
Brendan Williams and
Michael Lindner \pkgpyfMRIqc: a Software Package for Raw
fMRI Data Quality Assurance . . . . . . 23
Ulrike Grömping \pkgDoE.MIParray: an R Package for
Algorithmic Creation of Orthogonal
Arrays . . . . . . . . . . . . . . . . . 24
Corey Schimpf and
Brian Castellani \pkgCOMPLEX-IT: a Case-Based Modelling
and Scenario Simulation Platform for
Social Inquiry . . . . . . . . . . . . . 25
Vladyslav Oles and
Anton Kukushkin \pkgBoolSi: a Tool for Distributed
Simulations and Analysis of Boolean
Networks . . . . . . . . . . . . . . . . 26
Thomas Dowrick and
James Avery and
Mayo Faulkner and
David Holder and
Kirill Aristovich \pkgEIT-MESHER --- Segmented FEM Mesh
Generation and Refinement . . . . . . . 27
Jordi Figueras i Ventura and
Martin Lainer and
Zaira Schauwecker and
Jacopo Grazioli and
Urs Germann \pkgPyrad: a Real-Time Weather Radar
Data Processing Framework Based on
Py-ART . . . . . . . . . . . . . . . . . 28
Lisa Sahlmann and
Christian B. Mendl \pkgGuiTeNet: a Graphical User Interface
for Tensor Networks . . . . . . . . . . 29
Drew Paine and
Devarshi Ghoshal and
Lavanya Ramakrishnan Experiences with a Flexible User
Research Process to Build Data Change
Tools . . . . . . . . . . . . . . . . . 18
Hyemin Han \pkgBayesFactorFMRI: Implementing
Bayesian Second-Level fMRI Analysis with
Multiple Comparison Correction and
Bayesian Meta-Analysis of fMRI Images
with Multiprocessing . . . . . . . . . . 1
Isabelle Mirouze and
Sophie Ricci Smurf: System for Modelling with
Uncertainty Reduction, and Forecasting 2
Tianshu Liu and
David M. Salazar \pkgOpenOpticalFlow\_PIV: an Open Source
Program Integrating Optical Flow Method
with Cross- Correlation Method for
Particle Image Velocimetry . . . . . . . 3
Ian Edhlund and
Matthew Macauley and
Cindy Lee \pkgPBTK Optimizer: an Open Source
Application for PBTK Model Parameter
Optimization in Python . . . . . . . . . 4
Philippe Apparicio and
David Maignan and
Jérémy Gelb \pkgVIFECO: an Open-Source Software for
Counting Features on a Video . . . . . . 7
Konstantin Stadler \pkgPymrio --- a Python Based
Multi-Regional Input-Output Analysis
Toolbox . . . . . . . . . . . . . . . . 8
Christoph G. Hoffmann and
George N. Kiladis and
Maria Gehne and
Christian von Savigny A Python Package to Calculate the
OLR-Based Index of the
Madden--Julian-Oscillation (OMI) in
Climate Science and Weather Forecasting 9
Eugenio Piasini and
Alexandre L. S. Filipowicz and
Jonathan Levine and
Joshua I. Gold \pkgEmbo: a Python package for empirical
data analysis using the Information
Bottleneck . . . . . . . . . . . . . . . 10
Florian Riefstahl and
Felix Gross \pkgFastGAPP --- a MATLAB Based Program
Supports Earth Scientists Interpreting
Geochemical, Petrological and
Sedimentological Data . . . . . . . . . 11
William Thielicke and
René Sonntag Particle Image Velocimetry for MATLAB:
Accuracy and enhanced algorithms in
PIVlab . . . . . . . . . . . . . . . . . 12
Christopher Kadow and
Sebastian Illing and
Etor E. Lucio-Eceiza and
Martin Bergemann and
Mahesh Ramadoss and
Philipp S. Sommer and
Oliver Kunst and
Thomas Schartner and
Klaus Pankatz and
Jens Grieger and
Mareike Schuster and
Andy Richling and
Hannes Thiemann and
Ingo Kirchner and
Henning W Rust and
Thomas Ludwig and
Ulrich Cubasch and
Uwe Ulbrich Introduction to \pkgFreva --- a Free
Evaluation System Framework for Earth
System Modeling . . . . . . . . . . . . 13
Valentin Sulzer and
Scott G. Marquis and
Robert Timms and
Martin Robinson and
S. Jon Chapman \pkgPython Battery Mathematical
Modelling (PyBaMM) . . . . . . . . . . . 14
Tiger Cross and
Rasika Navarange and
Joon-Ho Son and
William Burr and
Arjun Singh and
Kelvin Zhang and
Miruna Rusu and
Konstantinos Gkoutzis and
Andrew Osborne and
Bart Nieuwenhuis \pkgSimple RGC: ImageJ Plugins for
Counting Retinal Ganglion Cells and
Determining the Transduction Efficiency
of Viral Vectors in Retinal Wholemounts 15
Christos Kotsalos and
Jonas Latt and
Bastien Chopard \pkgPalabos-npFEM: Software for the
Simulation of Cellular Blood Flow
(Digital Blood) . . . . . . . . . . . . 16
Thomas Dowrick and
Mian Ahmad and
Stephen Thompson and
James Hetherington and
Jonathan Cooper and
Matt Clarkson \pkgCMakeCatchTemplate: a C++ template
project . . . . . . . . . . . . . . . . 17
Aruna Jayasena Register Transfer Level Disparity
generator with Stereo Vision . . . . . . 18
Brandon P. M. Edwards and
Adam C. Smith \pkgbbsBayes: an R Package for
Hierarchical Bayesian Analysis of North
American Breeding Bird Survey Data . . . 19
Dan Barry and
Qijian Zhang and
Pheobe Wenyi Sun and
Andrew Hines \pkgGo Listen: an End-to-End Online
Listening Test Platform . . . . . . . . 20
Gáspár Lukács \pkgSmaRT-CIT: Smartphone App for the
Response Time Concealed Information Test
with Ready-to-Use Android Deployment . . 21
Rune Barnkob and
Massimiliano Rossi \pkgDefocusTracker: a Modular Toolbox
for Defocusing-based, Single-Camera, 3D
Particle Tracking . . . . . . . . . . . 22
Tulio Molina and
Juan Ortega and
Juan Muñoz \pkgHELMpy, Open Source Package of Power
Flow Solvers, Including the Holomorphic
Embedding Load Flow Method (HELM),
Developed on Python 3 . . . . . . . . . 23
Adrian Moore \pkgautoAPI --- a Web-Based Tool for
Specification of an API Endpoint to
Return JSON Data From an XML Source . . 24
Ales Jelinek and
Adam Ligocki and
Ludek Zalud Robotic Template Library . . . . . . . . 25
Angela Herring and
Charles Ferenbaugh and
Christopher Malone and
Daniel Shevitz and
Evgeny Kikinzon and
Gary Dilts and
Hoby Rakotoarivelo and
Jan Velechovsky and
Konstantin Lipnikov and
Navamita Ray and
Rao Garimella \pkgPortage: a Modular Data Remap
Library for Multiphysics Applications on
Advanced Architectures . . . . . . . . . 26
Saras M. Windecker and
Peter A. Vesk and
Stacey M. Trevathan-Tackett and
Nick Golding \pkgmixchar: an R Package for the
Deconvolution of Thermal Decay Curves 27
Robin Champseix and
Laurent Ribiere and
Clément Le Couedic A Python Package for Heart Rate
Variability Analysis and Signal
Preprocessing . . . . . . . . . . . . . 28
Ross J. Turner and
Rebecca B. Latto and
Anya M. Reading An ObsPy Library for Event Detection and
Seismic Attribute Calculation: Preparing
Waveforms for Automated Analysis . . . . 29
Jacques Muthusi and
Peter W. Young and
Samuel Mwalili \pkg%svy\_freqs: a Generic SAS Macro for
Creating Publication-Quality Three-Way
Cross-Tabulations . . . . . . . . . . . 30
Claudio S. Ravasio and
Lyndon Da Cruz and
Christos Bergeles \pkgoflibnumpy and \pkgoflibpytorch:
Optical Flow Handling and Manipulation
in Python . . . . . . . . . . . . . . . 31
Diogo Ferrari \pkgCESER: an R Package to Compute
Cluster Estimated Standard Errors . . . 32
Maarten Plieger and
Ernst de Vreede \pkgAdaguc-Server: Interactive Access to
Heterogeneous Meteorological and
Climatological Datasets Using Open
Standards . . . . . . . . . . . . . . . 33
James R. Schmidt \pkgCSVDataMerge: a Simple and Free
Program for Concatenating Experimental
Data Files . . . . . . . . . . . . . . . 34
M. Bekker-Nielsen Dunbar and
Thomas J. R. Finnie \pkgbayesint: a Python Package for
Calculating Bayesian Credible Intervals
of Ratios of Beta Distributions . . . . 35
J. Fehr and
C. Himpe and
S. Rave and
J. Saak Sustainable Research Software Hand-Over 5
Simon Hilpert and
Stephan Günther and
Martin Söthe \pkgoemof.tabular --- Introducing Data
Packages for Reproducible Workflows in
Energy System Modeling . . . . . . . . . 6
Rémi Cresson \pkgSR4RS: a Tool for Super Resolution
of Remote Sensing Images . . . . . . . . ??
Vanessa Sochat and
Nicholas May and
Ian Cosden and
Carlos Martinez-Ortiz and
Sadie Bartholomew The Research Software Encyclopedia: a
Community Framework to Define Research
Software . . . . . . . . . . . . . . . . ??
Johannes N. Hansen \pkgnd --- a Framework for the Analysis
of $n$-dimensional Earth Observation
Data . . . . . . . . . . . . . . . . . . ??
Thi-Ngoc-Thu Nguyen and
Andreas Höfter and
Kevin Leonardic and
Stefanie Rosenhain and
Fabian Kiessling and
Wannida Sae-Tang and
Uwe Naumann and
Felix Gremse A Micro-computed Tomography Database and
Reference Implementation for Parallel
Computations of Trabecular Thickness and
Spacing . . . . . . . . . . . . . . . . ??
Nikolay Petrov and
Vasil Atanasov and
Trevor Thompson Open-Source MUltiple Tests Corrections
and FOrmatted Tables Software (MUFOS) ??
Gabi Wethor and
Matthew L. Hale \pkgStudySandboxx: a Tool for Scraping,
Sandboxing, Preserving, and Preparing
Interactive Web Sites for Use in
Human-computer Interaction and
Behavioral Studies . . . . . . . . . . . ??
Xin Tong and
Sou-Cheng T. Choi and
Yuhan Ding and
Fred J. Hickernell and
Lan Jiang and
Lluís Antoni Jiménez Rugama and
Jagadeeswaran Rathinavel and
Kan Zhang and
Yizhi Zhang and
Xuan Zhou \pkgGuaranteed Automatic Integration
Library (GAIL): an Open-Source MATLAB
Library for Function Approximation,
Optimization, and Integration . . . . . ??
Nils Rosjat and
Silvia Daun \pkgDST (Dynamic Synchronization
Toolbox): a MATLAB Implementation of the
Dynamic Phase-Locking Pipeline from
Stimulus Transformation into Motor
Action: Dynamic Graph Analysis Reveals a
Posterior-to- Anterior Shift in Brain
Network Communication of Older Subjects ??
Brena Lima and
Nuno Fachada and
Rui Dinis and
Daniel B. Costa and
Marko Beko \pkgUavnoma: a UAV-NOMA Network Model
under Non-Ideal Conditions . . . . . . . ??
Meryem Berrada and
Richard A. Secco \pkgRho: Application to Analyze
Electrical Resistivity . . . . . . . . . ??
Anna-Lena Lamprecht and
Carlos Martinez-Ortiz and
Michelle Barker and
Sadie L. Bartholomew and
Justin Barton and
Neil Chue Hong and
Jeremy Cohen and
Stephan Druskat and
Jeremy Forest and
Jean-Noël Grad and
Daniel S. Katz and
Robin Richardson and
Robert Rosca and
Douwe Schulte and
Alexander Struck and
Marion Weinzierl What Do We (Not) Know About Research
Software Engineering? . . . . . . . . . ??
Magnus Hagdorn and
Noel Gourmelen \pkgTaskfarm: a Client/Server Framework
for Supporting Massive Embarrassingly
Parallel Workloads . . . . . . . . . . . ??
Adéla\"\ide Raguin and
Ian Stansfield and
Maria Carmen Romano \pkgExpressInHost: a Codon Tuning Tool
for the Expression of Recombinant
Proteins in Host Microorganisms . . . . ??
João Ramalhinho and
Thomas Dowrick and
Ester Bonmati and
Matthew J. Clarkson \pkgFan-Slicer: a Pycuda Package for
Fast Reslicing of Ultrasound Shaped
Planes . . . . . . . . . . . . . . . . . ??
Md. Manjurul Hussain and
Ishtiak Mahmud and
Sheikh Hefzul Bari \pkgpyHomogeneity: a Python Package for
Homogeneity Test of Time Series Data . . ??
Simon Christ and
Daniel Schwabeneder and
Christopher Rackauckas and
Michael Krabbe Borregaard and
Thomas Breloff \pkgPlots.jl --- a User Extendable
Plotting API for the Julia Programming
Language . . . . . . . . . . . . . . . . ??
Vanessa Sochat and
Matthieu Muffato and
Audrey Stott and
Marco De La Pierre and
Georgia Stuart Automated Discovery of Container
Executables . . . . . . . . . . . . . . ??