Last update:
Fri May 21 09:02:44 MDT 2021
Luke Tierney Under New Memory Management . . . . . . 10--11
Torsten Hothorn On Exact Rank Tests in R . . . . . . . . 11--12
Stefano M. Iacus Porting R to the Macintosh . . . . . . . 13
Peter Dalgaard The density of the non-central
chi-squared distribution for large
values of the noncentrality parameter 14--15
Brian D. Ripley Connections . . . . . . . . . . . . . . 16--17
Brian D. Ripley Using Databases with R . . . . . . . . . 18--20
M. J. Ray Rcgi 4: Making Web Statistics Even
Easier . . . . . . . . . . . . . . . . . 20--21
John M. Chambers and
Duncan Temple Lang Omegahat Packages for R . . . . . . . . 21--24
Duncan Temple Lang Using XML for Statistics: The \pkgXML
Package . . . . . . . . . . . . . . . . 24--27
Bill Venables Programmer's Niche . . . . . . . . . . . 27--30
Brian D. Ripley and
Kurt Hornik Date--Time Classes . . . . . . . . . . . 8--11
Brian D. Ripley Installing R under Windows . . . . . . . 11--14
Paulo J. Ribeiro, Jr. and
Peter J. Diggle \pkggeoR: A Package for Geostatistical
Analysis . . . . . . . . . . . . . . . . 14--18
Martin Schlather Simulation and Analysis of Random Fields 18--20
Simon N. Wood \pkgmgcv: GAMs and Generalized Ridge
Regression for R . . . . . . . . . . . . 20--25
Jonathan Rougier What's the Point of `tensor'? . . . . . 26--27
Torsten Hothorn and
Frank Bretz and
Alan Genz On Multivariate $t$ and Gauß
Probabilities in R . . . . . . . . . . . 27--29
Jan de Leeuw Porting R to Darwin/X11 and Mac OS X . . 2--4
Michael Na Li and
A. J. Rossini \pkgRPVM: Cluster Statistical Computing
in R . . . . . . . . . . . . . . . . . . 4--7
Achim Zeileis \pkgstrucchange: Testing for Structural
Change in Linear Regression
Relationships . . . . . . . . . . . . . 8--11
Thomas Lumley Programmer's Niche: Macros in R . . . . 11--13
Roger Bivand More on Spatial Data . . . . . . . . . . 13--17
John M. Chambers and
Duncan Temple Lang Object-Oriented Programming in R . . . . 17--19
Duncan Temple Lang In Search of C/C++ & FORTRAN Routines . . 20--23
David Meyer Support Vector Machines . . . . . . . . 23--26
Peter Dalgaard A Primer on the R-Tcl/Tk Package . . . . 27--31
Claudio Agostinelli \pkgwle: A Package for Robust Statistics
using Weighted Likelihood . . . . . . . 32--38
Duncan Murdoch Reading Foreign Files . . . . . . . . . 2--3
Torsten Hothorn and
Berthold Lausen Maximally Selected Rank Statistics in R 3--5
Günther Sawitzki Quality Control and Early Diagnostics
for cDNA Microarrays . . . . . . . . . . 6--10
Robert Gentleman and
Vincent Carey Bioconductor . . . . . . . . . . . . . . 11--16
Jonathan Marchini \pkgAnalyzeFMRI: An R package for the
exploration and analysis of MRI and fMRI
datasets . . . . . . . . . . . . . . . . 17--23
Sandrine Dudoit and
Yee Hwa Yang and
Ben Bolstad Using R for the Analysis of DNA
Microarray Data . . . . . . . . . . . . 24--32
Brian D. Ripley Time Series in R 1.5.0 . . . . . . . . . 2--7
David Meyer Naive Time Series Forecasting Methods 7--10
Hao Yu \pkgRmpi: Parallel Statistical Computing
in R . . . . . . . . . . . . . . . . . . 10--14
Paul Murrell The \pkggrid Graphics Package . . . . . 14--19
Deepayan Sarkar Lattice . . . . . . . . . . . . . . . . 19--23
Bill Venables Programmer's Niche . . . . . . . . . . . 24--26
Ole F. Christensen and
Paulo J. Ribeiro \pkggeoRglm: A Package for Generalised
Linear Spatial Models . . . . . . . . . 26--28
Robert Gentleman and
Jeff Gentry Querying PubMed . . . . . . . . . . . . 28--31
Alec Stephenson \pkgevd: Extreme Value Distributions . . 31--32
Andrea Peters and
Torsten Hothorn and
Berthold Lausen \pkgipred: Improved Predictors . . . . . 33--36
Angelo J. Canty Resampling Methods in R: The \pkgboot
Package . . . . . . . . . . . . . . . . 2--7
Achim Zeileis and
Torsten Hothorn Diagnostic Checking in Regression
Relationships . . . . . . . . . . . . . 7--10
David E. Brahm Delayed Data Packages . . . . . . . . . 11--12
Jun Yan \pkggeepack: Yet Another Package for
Generalized Estimating Equations . . . . 12--14
Frank Bretz and
Torsten Hothorn and
Peter Westfall On Multiple Comparisons in R . . . . . . 14--17
Andy Liaw and
Matthew Wiener Classification and Regression by
\pkgrandomForest . . . . . . . . . . . . 18--22
Robert Gentleman Some Strategies for Dealing with Genomic
Data . . . . . . . . . . . . . . . . . . 22--25
Peter Dalgaard Changes to the R-Tcl/Tk package . . . . 25--27
Friedrich Leisch Sweave, Part I: Mixing R and \LaTeX . . 28--31
Uwe Ligges R Help Desk: Automation of Mathematical
Annotation in Plots . . . . . . . . . . 32--34
Luke Tierney Name Space Management for R . . . . . . 2--6
Douglas Bates Converting Packages to S4 . . . . . . . 6--8
Gregory R. Warnes The \pkggenetics Package . . . . . . . . 9--13
Jürgen Groß Variance Inflation Factors . . . . . . . 13--15
Jun Yan and
A. J. Rossini Building Microsoft Windows Versions of R
and R packages under Intel Linux . . . . 15--17
Thomas Lumley Analysing Survey Data in R . . . . . . . 17--20
Brett Carson and
Robert Murison and
Ian A. Mason Computational Gains Using RPVM on a
Beowulf Cluster . . . . . . . . . . . . 21--26
Uwe Ligges R Help Desk: Getting Help --- R's Help
Facilities and Manuals . . . . . . . . . 26--28
Marc Schwartz R Help Desk: An Introduction to Using
R's Base Graphics . . . . . . . . . . . 2--6
Paul Murrell Integrating grid Graphics Output with
Base Graphics Output . . . . . . . . . . 7--12
Angelo Mineo A New Package for the General Error
Distribution . . . . . . . . . . . . . . 13--16
Colin A. Smith Web-based Microarray Analysis using
Bioconductor . . . . . . . . . . . . . . 17--20
Friedrich Leisch \pkgSweave, Part II: Package Vignettes 21--24
Jonathan Edwards and
Paul Oman Dimensional Reduction for Data Mapping 2--7
Thomas Petzoldt R as a Simulation Platform in Ecological
Modelling . . . . . . . . . . . . . . . 8--16
J. R. Lockwood and
Harold Doran and
Daniel F. McCaffrey Using R for Estimating Longitudinal
Student Achievement Models . . . . . . . 17--23
Rod Ball lmeSplines . . . . . . . . . . . . . . . 24--28
Mark Bravington Debugging Without (Too Many) Tears . . . 29--32
Eric Lecoutre The \pkgR2HTML Package . . . . . . . . . 33--36
Uwe Ligges R Help Desk: Package Management . . . . 37--39
Marc Schwartz The Decision To Use R . . . . . . . . . 2--5
Daniel Chessel and
Anne B. Dufour and
Jean Thioulouse The \pkgade4 Package --- I: One-table
Methods . . . . . . . . . . . . . . . . 5--10
Luca Scrucca \pkgqcc: An R package for quality
control charting and statistical process
control . . . . . . . . . . . . . . . . 11--17
Douglas Bates Least Squares Calculations in R . . . . 17--20
Jianhua Zhang and
Robert Gentleman Tools for Interactively Exploring R
Packages . . . . . . . . . . . . . . . . 20--25
Thomas Lumley The \pkgsurvival Package . . . . . . . . 26--28
Gabor Grothendieck and
Thomas Petzoldt R Help Desk: Date and Time Classes in R 29--32
Thomas Lumley Programmers' Niche: A Simple Class, in
S3 and S4 . . . . . . . . . . . . . . . 33--36
Brian D. Ripley Lazy Loading and Packages in R 2.0.0 . . 2--4
Paul Murrell Fonts, Lines, and Transparency in R
Graphics . . . . . . . . . . . . . . . . 5--9
Roger D. Peng and
Leah J. Welty The NMMAPSdata Package . . . . . . . . . 10--14
Jeff Gentry and
Vincent Carey and
Emden Gansner and
Robert Gentleman Laying Out Pathways With \pkgRgraphviz 14--18
Jun Yan Fusing R and BUGS through Wine . . . . . 19--21
Paul Gilbert R Package Maintenance . . . . . . . . . 21--24
Brian D. Ripley Internationalization Features of R 2.1.0 2--7
Brian D. Ripley Packages and their Management in R 2.1.0 8--11
Paul Murrell Recent Changes in grid Graphics . . . . 12--20
Alessandra Brazzale \pkghoa: An R Package Bundle for Higher
Order Likelihood Inference . . . . . . . 20--27
Douglas Bates Fitting Linear Mixed Models in R . . . . 27--30
Ray Brownrigg and
David Harte Using R for Statistical Seismology . . . 31--35
Jonathan Rougier Literate Programming for Creating and
Maintaining Packages . . . . . . . . . . 35--39
Achim Zeileis CRAN Task Views . . . . . . . . . . . . 39--40
Damian Betebenner Using Control Structures with Sweave . . 40--44
Bill Pikounis and
Andy Liaw The Value of R for Preclinical
Statisticians . . . . . . . . . . . . . 44--47
Robin K. S. Hankin Recreational mathematics with R:
introducing the ``\pkgmagic'' package 48--51
John Fox Programmer's Niche: How Do You Spell
That Number? . . . . . . . . . . . . . . 51--55
Adrian E. Raftery and
Ian S. Painter and
Christopher T. Volinsky \pkgBMA: An R package for Bayesian Model
Averaging . . . . . . . . . . . . . . . 2--8
Edzer J. Pebesma and
Roger S. Bivand Classes and methods for spatial data in
R . . . . . . . . . . . . . . . . . . . 9--13
Xianhong Xie Running long R jobs with Condor DAG . . 13--15
Pierre L'Ecuyer and
Josef Leydold \pkgrstream: Streams of random numbers
for stochastic simulation . . . . . . . 16--20
Axel Benner \pkgmfp: Multivariable fractional
polynomials . . . . . . . . . . . . . . 20--23
Oliver Sailer \pkgcrossdes: A package for design and
randomization in crossover studies . . . 24--27
Uwe Ligges and
Duncan Murdoch R Help Desk: Make `R CMD' Work under
Windows --- an Example . . . . . . . . . 27--28
Andrew D. Martin and
Kevin M. Quinn Applied Bayesian Inference in R using
\pkgMCMCpack . . . . . . . . . . . . . . 2--7
Martyn Plummer and
Nicky Best and
Kate Cowles and
Karen Vines \pkgCODA: Convergence Diagnosis and
Output Analysis for MCMC . . . . . . . . 7--11
Samantha Cook and
Andrew Gelman Bayesian Software Validation . . . . . . 11--12
Andrew Thomas and
Bob O'Hara and
Uwe Ligges and
Sibylle Sturtz Making BUGS Open . . . . . . . . . . . . 12--17
Andrew Thomas The BUGS Language . . . . . . . . . . . 17--21
Jouni Kerman and
Andrew Gelman Bayesian Data Analysis using R . . . . . 21--24
Peter Ruckdeschel and
Matthias Kohl and
Thomas Stabla and
Florian Camphausen S4 Classes for Distributions . . . . . . 2--6
David Clifford and
Peter McCullagh The regress function . . . . . . . . . . 6--10
\Lukasz Komsta Processing data for outliers . . . . . . 10--13
David Kane and
Jeff Enos Analysing equity portfolios in R . . . . 13--21
Roman Pahl and
Andreas Ziegler and
Inke R. König \pkgGroupSeq: Designing clinical trials
using group sequential designs . . . . . 21--26
Sven Garbade and
Peter Burgard Using R/Sweave in everyday clinical
practice . . . . . . . . . . . . . . . . 26--31
M. Wangler and
J. Beyersmann and
M. Schumacher \pkgchangeLOS: An R-package for change
in length of hospital stay based on the
Aalen--Johansen estimator . . . . . . . 31--35
Nitin Jain and
Gregory R. Warnes Balloon Plot . . . . . . . . . . . . . . 35--38
Jing Hua Zhao Drawing pedigree diagrams with R and
graphviz . . . . . . . . . . . . . . . . 38--41
Paul Murrell and
Brian Ripley Non-Standard Fonts in PostScript and PDF
graphics . . . . . . . . . . . . . . . . 41--47
Sòren Hòjsgaard The \pkgdoBy package . . . . . . . . . . 47--49
Robin K. S. Hankin Normed division algebras with R:
Introducing the \pkgonion package . . . 49--52
Robin K. S. Hankin Electrical properties of resistor
networks . . . . . . . . . . . . . . . . 52--53
Peter Watkins and
Bill Venables Non-linear regression for optimising the
separation of carboxylic acids . . . . . 2--7
Johannes Ranke Fitting dose-response curves from
bioassays and toxicity testing . . . . . 7--12
Bjòrn-Helge Mevik The \pkgpls package . . . . . . . . . . 12--17
Chris Fraley and
Adrian E. Raftery Some Applications of Model-Based
Clustering in Chemistry . . . . . . . . 17--23
Ron Wehrens and
Egon Willighagen Mapping databases of X-ray powder
patterns . . . . . . . . . . . . . . . . 24--28
Rajarshi Guha Generating, Using and Visualizing
Molecular Information in R . . . . . . . 28--33
Max Kuhn Sweave and the Open Document Format ---
The \pkgodfWeave Package . . . . . . . . 2--8
Jim Lemon plotrix . . . . . . . . . . . . . . . . 8--12
Adrian Bowman and
Ewan Crawford and
Richard Bowman \pkgrpanel: making graphs move with
\pkgtcltk . . . . . . . . . . . . . . . 12--17
Matthew Pocernich R's role in the climate change debate 17--18
Roger D. Peng Interacting with Data using the
\pkgfilehash Package . . . . . . . . . . 19--24
Robin K. S. Hankin Special functions in R: introducing the
\pkggsl package . . . . . . . . . . . . 24--26
Wolfgang Lederer and
Helmut Küchenhoff A short Introduction to the SIMEX and
MCSIMEX . . . . . . . . . . . . . . . . 26--31
Roger Koenker Parametric Links for Binary Response . . 32--34
Víctor Leiva and
Hugo Hernández and
Marco Riquelme A New Package for the Birnbaum--Saunders
Distribution . . . . . . . . . . . . . . 35--40
Susan Holmes Review of Fionn Murtagh's book:
\booktitleCorrespondence Analysis and
Data Coding with Java and R . . . . . . 41--43
Uwe Ligges R Help Desk: Accessing the Sources . . . 43--45
Li Long and
Vince Carey Graphs and Networks: Tools in
Bioconductor . . . . . . . . . . . . . . 2--7
Seth Falcon Modeling Package Dependencies Using
Graphs . . . . . . . . . . . . . . . . . 8--12
Oleg Sklyar and
Wolfgang Huber Image Analysis for Microscopy Screens 12--16
Mark Dunning and
Mike Smith and
Natalie Thorne and
Simon Tavaré \pkgbeadarray: An R Package to Analyse
Illumina BeadArrays . . . . . . . . . . 17--23
Matthew Ritchie and
Wolfgang Huber Transcript Mapping with High-Density
Tiling Arrays . . . . . . . . . . . . . 23--27
Nolwenn Le Meur and
Florian Hahne Analyzing Flow Cytometry Data with
Bioconductor . . . . . . . . . . . . . . 27--32
Denise Scholtens Protein Complex Membership Estimation
using \pkgapComplex . . . . . . . . . . 32--36
Vince Carey SNP Metadata Access and Use with
Bioconductor . . . . . . . . . . . . . . 36--39
Steffen Durinck Integrating Biological Data Resources
into R with \pkgbiomaRt . . . . . . . . 40--45
Holger Schwender and
Andreas Krause and
Katja Ickstadt Identifying Interesting Genes with
siggenes . . . . . . . . . . . . . . . . 45--50
Juliane Schäfer and
Rainer Opgen-Rhein and
Korbinian Strimmer Reverse Engineering Genetic Networks
using the \pkgGeneNet Package . . . . . 50--53
Aedín C. Culhane and
Jean Thioulouse A Multivariate Approach to Integrating
Datasets using made4 and ade4 . . . . . 54--58
Antoine Lucas and
Sylvain Jasson Using \pkgamap and \pkgctc Packages for
Huge Clustering . . . . . . . . . . . . 58--60
Chris Fraley and
Adrian E. Raftery Model-based Microarray Image Analysis 60--63
Gregory R. Warnes Sample Size Estimation for Microarray
Experiments Using the ssize Package . . 64--68
Paul Murrell Viewing Binary Files with the
\pkghexView Package . . . . . . . . . . 2--8
Bettina Grün and
Friedrich Leisch \pkgFlexMix: An R Package for Finite
Mixture Modelling . . . . . . . . . . . 8--13
Andrea Onofri and
Egidio Ciriciofolo Using R to Perform the AMMI Analysis on
Agriculture Variety Trials . . . . . . . 14--19
Gemechis Dilba and
Frank Schaarschmidt and
Ludwig A. Hothorn Inferences for Ratios of Normal Means 20--23
Gregor Gorjanc Working with Unknown Values . . . . . . 24--26
Jochen Einbeck and
John Hinde and
Ross Darnell A New Package for Fitting Random Effect
Models . . . . . . . . . . . . . . . . . 26--30
Andrew Robinson Augmenting R with Unix Tools . . . . . . 30--33
Mathieu Ribatet \pkgPOT: Modelling Peaks Over a
Threshold . . . . . . . . . . . . . . . 34--36
Kyle Campbell and
Jeff Enos and
Daniel Gerlanc and
David Kane Backtests . . . . . . . . . . . . . . . 36--41
Andy Liaw Review of John Verzani's Book:
\booktitleUsing R for Introductory
Statistics . . . . . . . . . . . . . . . 41--42
Peter Dalgaard New Functions for Multivariate Analysis 2--7
Heather Turner and
David Firth \pkggnm: A Package for Generalized
Nonlinear Models . . . . . . . . . . . . 8--12
Jörg Polzehl and
Karten Tabelow \pkgfmri: A Package for Analyzing \tt
fmri Data . . . . . . . . . . . . . . . 13--17
Ben B. Hansen \pkgOptmatch: Flexible, Optimal Matching
for Observational Studies . . . . . . . 18--24
Hemant Ishwaran and
Udaya B. Kogalur Random Survival Forests for R . . . . . 25--31
Richard Newton and
Lorenz Wernisch \pkgRwui: A Web Application to Create
User Friendly Web Interfaces for R
Scripts . . . . . . . . . . . . . . . . 32--35
Tristen Hayfield and
Jeffrey S. Racine The \pkgnp Package: Kernel Methods for
Categorical and Continuous Data . . . . 35--43
Olivia Lau and
Ryan T. Moore and
Michael Kellermann \pkgeiPack: $ R \times C $ Ecological
Inferences and Higher-Dimension Data
Management . . . . . . . . . . . . . . . 43--47
Stéphane Dray and
Anne B. Dufour and
Daniel Chessel The \pkgade4 Package --- II: Two-table
and $K$-table Methods . . . . . . . . . 47--52
Friedrich Leisch Review of ``The R Book'' . . . . . . . . 53--54
Hee-Seok Oh and
Donghoh Kim \pkgSpherWave: An R Package for
Analyzing Scattered Spherical Data by
Spherical Wavelets . . . . . . . . . . . 2--7
Sebastián P. Luque Diving Behaviour Analysis in R . . . . . 8--14
Robin K. S. Hankin Very Large Numbers in R: Introducing
Package \pkgBrobdingnag . . . . . . . . 15--16
Alejandro Jara Applied Bayesian Non- and
Semi-parametric Inference using
\pkgDPpackage . . . . . . . . . . . . . 17--26
John Verzani An Introduction to \pkggWidgets . . . . 26--33
Bill Alpert Financial Journalism with R . . . . . . 34--36
Sanford Weisberg and
Hadley Wickham Need A Hint? . . . . . . . . . . . . . . 36--38
Patrick Mair and
Reinhold Hatzinger Psychometrics Task View . . . . . . . . 38--40
Guido Schwarzer \pkgmeta: An R Package for Meta-Analysis 40--45
John Fox Extending the R Commander by ``Plug-In''
Packages . . . . . . . . . . . . . . . . 46--52
Sandra L. Taylor and
Duncan Temple Lang and
Katherine S. Pollard Improvements to the Multiple Testing
Package \pkgmulttest . . . . . . . . . . 52--55
Gregor Gorjanc Using Sweave with LyX . . . . . . . . . 2--9
Jeff Enos and
David Kane and
Arjun Ravi Narayan and
Aaron Schwartz and
Daniel Suo and
Luyi Zhao Trade Costs . . . . . . . . . . . . . . 10--13
Hormuzd A. Katki and
Steven D. Mark Survival Analysis for Cohorts with
Missing Covariate Information . . . . . 14--19
Vito M. R. Muggeo \pkgsegmented: An R package to Fit
Regression Models with Broken-Line
Relationships . . . . . . . . . . . . . 20--25
Cathy W. S. Chen and
Edward M. H. Lin and
F. C. Liu and
Richard Gerlach Bayesian Estimation for Parsimonious
Threshold Autoregressive Models in R . . 26--33
Vincent Goulet and
Mathieu Pigeon Statistical Modeling of Loss
Distributions Using \pkgactuar . . . . . 34--40
Robin K. S. Hankin Programmers' Niche: Multivariate
polynomials in R . . . . . . . . . . . . 41--45
Uwe Ligges and
John Fox R Help Desk: How Can I Avoid This Loop
or Make It Faster? . . . . . . . . . . . 46--50
Hadley Wickham and
Michael Lawrence and
Duncan Temple Lang and
Deborah F. Swayne An Introduction to \pkgrggobi . . . . . 3--7
Carsten F. Dormann and
Bernd Gruber and
Jochen Fründ Introducing the \pkgbipartite Package:
Analysing Ecological Networks . . . . . 8--11
Ioannis Kosmidis The \pkgprofileModel R Package:
Profiling Objectives for Models with
Linear Predictors . . . . . . . . . . . 12--18
Ingo Feinerer An Introduction to Text Mining in R . . 19--22
Yihui Xie and
Xiaoyue Cheng \pkganimation: A Package for Statistical
Animations . . . . . . . . . . . . . . . 23--27
Thomas W. Yee The \pkgVGAM Package . . . . . . . . . . 28--39
Paul Murrell Comparing Non-Identical Objects . . . . 40--47
A. Allignol and
J. Beyersmann and
M. Schumacher \pkgmvna: An R Package for the
Nelson--Aalen Estimator in Multistate
Models . . . . . . . . . . . . . . . . . 48--50
Vince Carey Programmers' Niche: The Y of R . . . . . 51--53
John M. Chambers Facets of R . . . . . . . . . . . . . . 5--8
Stefan Theußl and
Achim Zeileis Collaborative Software Development Using
R-Forge . . . . . . . . . . . . . . . . 9--14
Paul Murrell Drawing Diagrams with R . . . . . . . . 15--21
Gregoire Pau and
Wolfgang Huber The \pkghwriter Package . . . . . . . . 22--24
David Ardia and
Lennart F. Hoogerheide and
Herman K. van Dijk \pkgAdMit: Adaptive Mixtures of
Student-$t$ Distributions . . . . . . . 25--30
Vincent Goulet and
Michel Jacques and
Mathieu Pigeon \pkgexpert: Modeling Without Data Using
Expert Opinion . . . . . . . . . . . . . 31--36
Xuefei Mi and
Tetsuhisa Miwa and
Torsten Hothorn \pkgmvtnorm: New Numerical Algorithm for
Multivariate Normal Probabilities . . . 37--39
Donghoh Kim and
Hee-Seok Oh \pkgEMD: A Package for Empirical Mode
Decomposition and Hilbert Spectrum . . . 40--46
Megan Orr and
Peng Liu Sample Size Estimation while Controlling
False Discovery Rate for Microarray
Experiments Using the \pkgssize.fdr
Package . . . . . . . . . . . . . . . . 47--53
Jochen Knaus and
Christine Porzelius and
Harald Binder and
Guido Schwarzer Easier Parallel Computing in R with
\pkgsnowfall and \pkgsfCluster . . . . . 54--59
Alex Guazzelli and
Michael Zeller and
Wen-Ching Lin and
Graham Williams \pkgPMML: An Open Standard for Sharing
Models . . . . . . . . . . . . . . . . . 60--65
John Fox Aspects of the Social Organization and
Trajectory of the R Project . . . . . . 5--13
Carolin Strobl and
Torsten Hothorn and
Achim Zeileis Party on! . . . . . . . . . . . . . . . 14--17
Pierre Lafaye de Micheaux and
Beno\^\it Liquet \pkgConvergenceConcepts: an R Package to
Investigate-Various-Modes-of-Convergence 18--25
J. F. Coeurjolly and
R. Drouilhet and
P. Lafaye de Micheaux and
J. F. Robineau \pkgasympTest: A Simple R Package for
Classical Parametric Statistical Tests
and Confidence Intervals in Large
Samples . . . . . . . . . . . . . . . . 26--30
J. Carpenter and
G. Rücker and
G. Schwarzer \pkgcopas: An R Package for Fitting the
Copas Selection Model . . . . . . . . . 31--36
Anthony Damico Transitioning to R: Replicating SAS,
Stata, and SUDAAN Analysis Techniques in
Health Policy Data . . . . . . . . . . . 37--44
Graham J. Williams \pkgRattle: A Data Mining GUI for R . . 45--55
Spencer Graves and
Sundar Dorai-Raj and
Romain François \pkgsos: Searching Help Pages of R
Packages . . . . . . . . . . . . . . . . 56--59
Duncan Murdoch and
Simon Urbanek The New R Help System . . . . . . . . . 60--65
Setia Pramana and
Dan Lin and
Philippe Haldermans and
Ziv Shkedy and
Tobias Verbeke and
Hinrich Göhlmann and
An De Bondt and
Willem Talloen and
Luc Bijnens \pkgIsoGene: An R Package for Analyzing
Dose-response Studies in Microarray
Experiments . . . . . . . . . . . . . . 5--12
Patrick Brown and
Lutong Zhou MCMC for Generalized Linear Mixed Models
with \pkgglmmBUGS . . . . . . . . . . . 13--17
Nils B. Weidmann and
Kristian Skrede Gleditsch Mapping and Measuring Country Shapes . . 18--24
Stefan Wilhelm and
B. G. Manjunath \pkgtmvtnorm: A Package for the
Truncated Multivariate Normal
Distribution . . . . . . . . . . . . . . 25--29
Frauke Günther and
Stefan Fritsch \pkgneuralnet: Training of Neural
Networks . . . . . . . . . . . . . . . . 30--38
Wiebke Werft and
Axel Benner \pkgglmperm: A Permutation of Regressor
Residuals Test for Inference in
Generalized Linear Models . . . . . . . 39--43
Jean Thioulouse and
Claire Valiente-Moro and
Lionel Zenner Online Reproducible Research: An
Application to Multivariate Analysis of
Bacterial DNA Fingerprint Data . . . . . 44--52
Michael P. Fay Two-sided Exact Tests and Matching
Confidence Intervals for Discrete Data 53--58
Karline Soetaert and
Thomas Petzoldt and
R. Woodrow Setzer Solving Differential Equations in R . . 5--15
Duncan Murdoch Source References . . . . . . . . . . . 16--19
Lars Rönnegård and
Xia Shen and
Moudud Alam \pkghglm: A Package for Fitting
Hierarchical Generalized Linear Models 20--28
Péter Sólymos \pkgdclone: Data Cloning in R . . . . . 29--37
Hadley Wickham \pkgstringr: Modern, Consistent String
Processing . . . . . . . . . . . . . . . 38--40
David Ardia and
Lennart F. Hoogerheide Bayesian Estimation of the GARCH(1,1)
Model with Student-$t$ Innovations . . . 41--47
Adelino Ferreira da Silva \pkgcudaBayesreg: Bayesian Computation
in CUDA . . . . . . . . . . . . . . . . 48--55
Christopher R. Bilder and
Boan Zhang and
Frank Schaarschmidt and
Joshua M. Tebbs \pkgbinGroup: A Package for Group
Testing . . . . . . . . . . . . . . . . 56--60
Murat Sariyar and
Andreas Borg The \pkgRecordLinkage Package: Detecting
Errors in Data . . . . . . . . . . . . . 61--67
Hemant Ishwaran and
Udaya B. Kogalur and
J. Sunil Rao \pkgspikeslab: Prediction and Variable
Selection Using Spike and Slab
Regression . . . . . . . . . . . . . . . 68--73
Hadley Wickham \pkgtestthat: Get Started with Testing 5--10
Angela Bohn and
Ingo Feinerer and
Kurt Hornik and
Patrick Mair Content-Based Social Network Analysis of
Mailing Lists . . . . . . . . . . . . . 11--18
Yohan Chalabi and
Martin Mächler and
Diethelm Würtz \pkgRmetrics --- \pkgtimeDate Package 19--24
Timothée Poisot The \pkgdigitize Package: Extracting
Numerical Data from Scatterplots . . . . 25--26
David Ardia and
Kris Boudt and
Peter Carl and
Katharine M. Mullen and
Brian G. Peterson Differential Evolution with \pkgDEoptim 27--34
Andy South \pkgrworldmap: A New R Package for
Mapping Global Data . . . . . . . . . . 35--43
Frédéric Lafitte and
Dirk Van Heule and
Julien Van hamme Cryptographic Boolean Functions with R 44--47
Paul Murrell Raster Images in R Graphics . . . . . . 48--54
Chris Fraley and
Adrian Raftery and
Tilmann Gneiting and
McLean Sloughter and
Veronica Berrocal Probabilistic Weather Forecasting in R 55--63
David Kane and
Andrew Liu and
Khanh Nguyen Analyzing an Electronic Limit Order Book 64--68
Rob J. Hyndman Giving a useR! Talk . . . . . . . . . . 69--71
Dianne Cook Tips for Presenting Your Work . . . . . 72--74
Thomas Baier and
Erich Neuwirth and
Michele De Meo Creating and Deploying an Application
with (R)Excel and R . . . . . . . . . . 5--11
Ian C. Marschner \pkgglm2: Fitting Generalized Linear
Models with Convergence Problems . . . . 12--15
Michael Lundholm Implementing the Compendium Concept with
Sweave and DOCSTRIP . . . . . . . . . . 16--21
Kurt Hornik and
Duncan Murdoch Watch Your Spelling! . . . . . . . . . . 22--28
Haizhou Wang and
Mingzhou Song \pkgCkmeans.1d.dp: Optimal $k$-means
Clustering in One Dimension by Dynamic
Programming . . . . . . . . . . . . . . 29--33
Taylor B. Arnold and
John W. Emerson Nonparametric Goodness-of-Fit Tests for
Discrete Null Distributions . . . . . . 34--39
Markus Gesmann and
Diego de Castillo Using the Google Visualisation API with
R . . . . . . . . . . . . . . . . . . . 40--44
Maxime Hervé \pkgGrapheR: a Multiplatform GUI for
Drawing Customizable Graphs in R . . . . 45--53
Han Lin Shang \pkgrainbow: An R Package for
Visualizing Functional Time Series . . . 54--59
Martyn Plummer Portable C++ for R Packages . . . . . . 60--63
Adrian G. Barnett and
Peter Baker and
Annette J. Dobson Analysing Seasonal Data . . . . . . . . 5--10
Elizabeth E. Holmes and
Eric J. Ward and
Kellie Wills \pkgMARSS: Multivariate Autoregressive
State-space Models for Analyzing
Time-series Data . . . . . . . . . . . . 11--19
Karl Ropkins and
David C. Carslaw openair --- Data Analysis Tools for the
Air Quality Community . . . . . . . . . 20--29
Daniel Adler Foreign Library Interface . . . . . . . 30--40
John Lawson \pkgVdgraph: A Package for Creating
Variance Dispersion Graphs . . . . . . . 41--44
Sarah C. Anoke and
Yuting Zhao and
Rafael Jaeger and
Nicholas J. Horton xgrid and R: Parallel Distributed
Processing Using Heterogeneous Groups of
Apple Computers . . . . . . . . . . . . 45--55
Timothy P. Jurka \pkgmaxent: An R Package for Low-memory
Multinomial Logistic Regression with
Support for Semi-automated Text
Classification . . . . . . . . . . . . . 56--59
Timothy T. Bergsma and
Michael S. Smith \pkgSumo: An Authenticating Web
Application with an Embedded R Session 60--63
Kurt Hornik and
Duncan Murdoch and
Achim Zeileis Who Did What? The Roles of R Package
Authors and How to Refer to Them . . . . 64--69
Paul Murrell What's in a Name? . . . . . . . . . . . 5--12
Paul Murrell It's Not What You Draw, It's What You
Don't Draw . . . . . . . . . . . . . . . 13--18
Paul Murrell and
Velvet Ly Debugging grid Graphics . . . . . . . . 19--27
Il Do Ha and
Maengseok Noh and
Youngjo Lee \pkgfrailtyHL: A Package for Fitting
Frailty Models with $H$-likelihood . . . 28--37
Rense Nieuwenhuis and
Manfred te Grotenhuis and
Ben Pelzer \pkginfluence.ME: Tools for Detecting
Influential Data in Mixed Effects Models 38--47
Zhenghua Nie and
Jeffrey S. Racine The \pkgcrs Package: Nonparametric
Regression Splines for Continuous and
Categorical Predictors . . . . . . . . . 48--56
John D. Kloke and
Joseph W. McKean \pkgRfit: Rank-based Estimation for
Linear Models . . . . . . . . . . . . . 57--64
Kayvan Sadeghi and
Giovanni M. Marchetti Graphical Markov Models with Mixed
Graphs in R . . . . . . . . . . . . . . 65--73
Rasmus Bååth The State of Naming Conventions in R . . 74--75
Hadley Wickham Editorial . . . . . . . . . . . . . . . 4--6
Loren Collingwood and
Timothy P. Jurka and
Amber E. Boydstun and
Emiliano Grossman and
Wouter van Atteveldt \pkgRTextTools: A Supervised Learning
Package for Text Classification . . . . 6--13
Yang Xiang and
Sylvain Gubian and
Brian Suomela and
Julia Hoeng Generalized Simulated Annealing for
Global Optimization: the \pkgGenSA
Package for R . . . . . . . . . . . . . 13--29
Belchin Kostov and
Mónica Bécue-Bertaut and
François Husson Multiple Factor Analysis on Contingency
Tables in the \pkgFactoMineR Package . . 29--39
John Fox and
Michael Friendly and
Sanford Weisberg Hypothesis Tests for Multivariate Linear
Models Using the \pkgcar Package . . . . 39--53
Manuel J. A. Eugster and
Thomas Schlesinger \pkgosmar: \pkgOpenStreetMap and R . . . 53--64
Han Shang \pkgftsa: An R Package for Analyzing
Functional Time Series . . . . . . . . . 64--73
A. Jonathan R. Godfrey Statistical Analysis from a Blind
Person's Perspective . . . . . . . . . . 73--80
Paolo Zagaglia \pkgPIN: Measuring Asymmetric
Information in Financial Markets with R 80--87
Alrik Thiem and
Adrian Dusa \pkgQCA: A Package for Qualitative
Comparative Analysis . . . . . . . . . . 87--98
Mathieu Colleter and
Jerome Guitton and
Didier Gascuel An Introduction to the EcoTroph R
package: Analyzing Aquatic Ecosystem
Trophic Network . . . . . . . . . . . . 98--108
Giada Valle and
Matteo Dell'Omodarme \pkgstellaR: a Package to Manage Stellar
Evolution Tracks and Isochrones . . . . 108--117
Heike Hofmann and
Antony Unwin and
Dianne Cook Let Graphics Tell the Story --- Datasets
in R . . . . . . . . . . . . . . . . . . 117--130
Stefan Wilhelm and
Miguel Godinho de Matos Estimating Spatial Probit Models in R 130--144
David Kahle and
Hadley Wickham \pkgggmap: Spatial Visualization with
\pkgggplot2 . . . . . . . . . . . . . . 144--162
David Kahle \pkgmpoly: Multivariate Polynomials in R 162--171
Anyiawung Chiara Forcheh and
Geert Verbeke and
Adetayo Kasim and
Dan Lin and
Ziv Shkedy and
Willem Talloen and
Hinrich W. H. Goehlmann and
Lieven Clement The beadarrayFilter: An R Package to
Filter Beads . . . . . . . . . . . . . . 171--181
Lee S. McDaniel and
Nicholas C. Henderson and
Paul J. Rathouz Fast Pure R Implementation of GEE:
Application of the \pkgMatrix Package 181--188
Milan Bouchet-Valat and
Gilles Bastin RcmdrPlugin.temis, a Graphical
Integrated Text Mining Solution in R . . 188--197
Jeroen Ooms Directions for Improved Dependency
Versioning in R . . . . . . . . . . . . 197--207
David LeBauer and
Michael Dietze and
Ben Bolker Translating Probability Distributions:
From R to BUGS and Back Again . . . . . 207--210
Jing Leng and
Jingjing Guan Conference Review: The 6th Chinese R
Conference . . . . . . . . . . . . . . . 210--212
Joshua Ulrich Conference Report: R/Finance 2013 . . . 212--215
UseR 2013 Organising Committee The R User Conference 2013 . . . . . . . 215--218
Bioconductor Team News from the Bioconductor Project . . . 218--220
Kurt Hornik R Foundation News . . . . . . . . . . . 220--221
The R.Core Team Changes in R . . . . . . . . . . . . . . 221--239
Kurt Hornik and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 239--264
Hadley Wickham Editorial . . . . . . . . . . . . . . . 3--4
David A. Armstrong II \pkgfactorplot: Improving Presentation
of Simple Contrasts in GLMs . . . . . . 4--16
Luca Sartore \pkgspMC: Modelling Spatial Random
Fields with Continuous Lag Markov Chains 16--29
Pavel Michna and
Milton Woods RNetCDF --- A Package for Reading and
Writing NetCDF Datasets . . . . . . . . 29--37
Stefan Roediger and
Alexander Bohm and
Ingolf Schimke Surface Melting Curve Analysis with R 37--53
Yang Lu and
David Kane Performance Attribution for Equity
Portfolios . . . . . . . . . . . . . . . 53--62
Weizhen Wang and
Guogen Shan \pkgExactCIdiff: An R Package for
Computing Exact Confidence Intervals for
the Difference of Two Proportions . . . 62--71
Yusuf K. Bilgic and
Herb Susmann \pkgrlme: An R Package for Rank-Based
Estimation and Prediction in Random
Effects Nested Models . . . . . . . . . 71--80
Christoph Sax and
Peter Steiner Temporal Disaggregation of Time Series 80--88
Stefan Boehringer Dynamic Parallelization of R Functions 88--97
S. Nadarajah and
S. A. A. Bakar \pkgCompLognormal: An R Package for
Composite Lognormal Distributions . . . 97--104
Simen Gaure \pkglfe: Fitting Linear Models with
Multiple Factors with Many Levels . . . 104--117
André Dietrich and
Sebastian Zug and
Jörg Kaiser The R in Robotics . . . . . . . . . . . 117--129
Marius Hofert On Sampling from the Multivariate $t$
Distribution . . . . . . . . . . . . . . 129--137
Genaro Sucarrat \pkgbetategarch: Simulation, Estimation
and Forecasting of Beta-Skew-$t$-EGARCH
Models . . . . . . . . . . . . . . . . . 137--148
Paul Murrell Changes to \pkggrid from 3.0.0 . . . . . 148--161
Kurt Hornik R Foundation News . . . . . . . . . . . 161--162
Bioconductor Team News from the Bioconductor Project . . . 162--164
Aurelie Siberchicot and
Stephane Dray Conference Report: Deuxi\`emes
Rencontres R . . . . . . . . . . . . . . 164--166
Kurt Hornik and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 166--192
The R.Core Team Changes in R . . . . . . . . . . . . . . 192--198
Deepayan Sarkar Editorial . . . . . . . . . . . . . . . 3--3
Carson Sievert Taming \pkgPITCHf/x Data with \pkgXML2R
and \pkgpitchRx . . . . . . . . . . . . 5--19
Matthew A. Nunes and
Sarah L. Taylor and
Idris A. Eckley Stationarity Testing and Texture
Counting in R . . . . . . . . . . . . . 20--30
Xiangdong Gu and
David Shapiro and
Michael D. Hughes and
Raji Balasubramanian Stratified Weibull Regression Model for
Interval-Censored Data . . . . . . . . . 31--40
John Muschelli and
Elizabeth Sweeney and
Ciprian Crainiceanu \pkgbrainR: Interactive $3$ and $4$D
Images of High Resolution Neuroimage
Data . . . . . . . . . . . . . . . . . . 41--48
Dominik Wabersich and
Joachim Vandekerckhove The \pkgRWiener Package: An R Package
Providing Distribution Functions for the
Wiener Diffusion Model . . . . . . . . . 49--56
Hai Qian \pkgPivotalR: A Package for Machine
Learning on Big Data . . . . . . . . . . 57--67
Bryan Stanfill and
Heike Hofmann and
Ulrike Genschel \pkgrotations: An R Package for SO(3)
Data . . . . . . . . . . . . . . . . . . 68--78
Nicola Lunardon and
Giovanna Menardi and
Nicola Torelli \pkgROSE: A Package for Class Imbalance
Learning . . . . . . . . . . . . . . . . 79--89
Brandon M. Greenwell and
Christine M. Schubert Kabban \pkginvestr: An R Package for Inverse
Estimation . . . . . . . . . . . . . . . 90--100
Julien Jacques and
Quentin Grimonprez and
Christophe Biernacki \pkgRankcluster: An R Package For
Clustering Multivariate Partial Rankings 101--110
Mark van der Loo \pkgstringdist: an R Package for
Approximate String Matching . . . . . . 111--122
Maurits Kaptein \pkgRStorm: Developing and Testing
Streaming Algorithms in R . . . . . . . 123--132
Paul Murrell and
Simon Potter The \pkggridSVG Package . . . . . . . . 133--143
Natalie A. Koziol and
Christopher R. Bilder \pkgMRCV: A Package for Analyzing
Categorical Variables with Multiple
Response Options . . . . . . . . . . . . 144--150
Thomas J. Leeper Archiving Reproducible Research with R
and Dataverse . . . . . . . . . . . . . 151--158
Daniel Bottomly and
Beth Wilmot and
Shannon K. McWeeney \pkgoligoMask: A Framework for Assessing
and Removing the Effect of Genetic
Variants on Microarray Probes . . . . . 159--163
Luigi Lombardi and
Massimiliano Pastore \pkgsgr: A Package for Simulating
Conditional Fake Ordinal Data . . . . . 164--177
Patrick Mair and
Scott Chamberlain Web Technologies Task View . . . . . . . 178--181
A. Jonathan R. Godfrey and
Robert Erhardt Addendum to ``Statistical Software from
a Blind Person's Perspective'' . . . . . 182--182
Kurt Hornik R Foundation News . . . . . . . . . . . 183--183
Bioconductor Team News from the Bioconductor Project . . . 184--185
Kurt Hornik and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 186--220
The R.Core Team Changes in R . . . . . . . . . . . . . . 221--235
Deepayan Sarkar Editorial . . . . . . . . . . . . . . . 3--3
Andrea Stocco Coordinate-Based Meta-Analysis of fMRI
Studies with R . . . . . . . . . . . . . 5--15
Jimmy Oh Automatic Conversion of Tables to
oLongForm Dataframes . . . . . . . . . . 16--26
Jonathan Zhang and
Nancy Heckman and
Davor Cubranic and
Joel G. Kingsolver and
Travis Gaydos and
J. S. Marron \pkgPrinsimp . . . . . . . . . . . . . . 27--42
Michael J. Grayling \pkgphaseR: An R Package for Phase Plane
Analysis of Autonomous ODE Systems . . . 43--51
Dane R. Van Domelen and
W. Stephen Pittard Flexible R Functions for Processing
Accelerometer Data, with Emphasis on
NHANES 2003--2006 . . . . . . . . . . . 52--62
Kieran Alden and
Mark Read and
Paul S. Andrews and
Jon Timmis and
Mark Coles Applying \pkgspartan to Understand
Parameter Uncertainty in Simulations . . 63--80
John Hughes \pkgngspatial: A Package for Fitting the
Centered Autologistic and Sparse Spatial
Generalized Linear Mixed Models for
Areal Data . . . . . . . . . . . . . . . 81--95
Irene Castro-Conde and
Jacobo de Uña-Álvarez \pkgsgof: An R Package for Multiple
Testing Problems . . . . . . . . . . . . 96--113
Paola Rebora and
Agus Salim and
Marie Reilly \pkgbshazard: A Flexible Tool for
Nonparametric Smoothing of the Hazard
Function . . . . . . . . . . . . . . . . 114--122
Ben Dêivide Oliveira Batista and
Daniel Furtado Ferreira \pkgSMR: An R Package for Computing the
Externally Studentized Normal Midrange
Distribution . . . . . . . . . . . . . . 123--136
Rune Hoff and
Jon Michael Gran and
Daniel Farewell Farewell's Linear Increments Model for
Missing Data: The \pkgFLIM Package . . . 137--150
Selcuk Korkmaz and
Dincer Goksuluk and
Gokmen Zararsiz \pkgMVN: An R Package for Assessing
Multivariate Normality . . . . . . . . . 151--162
Aiora Zabala \pkgqmethod: A Package to Explore Human
Perspectives Using Q Methodology . . . . 163--173
Fang Liu \pkggset: An R Package for Exact
Sequential Test of Equivalence
Hypothesis Based on Bivariate
Non-Central $t$-Statistics . . . . . . . 174--184
Markus Gesmann and
Andreas Tsanakas Conference Report: R in Insurance 2014 185--186
Maciej Ber\kesewicz and
Alicja Szabelska and
Joanna Zyprych-Walczak and
\Lukasz Wawrowski Conference Report: Polish Academic R
User Meeting . . . . . . . . . . . . . . 187--189
Martin Mächler and
Kurt Hornik R Foundation News . . . . . . . . . . . 190--191
Kurt Hornik and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 192--223
The R.Core Team Changes in R . . . . . . . . . . . . . . 224--226
The Bioconductor Team News from the Bioconductor Project . . . 227--228
Bettina Grün Editorial . . . . . . . . . . . . . . . 3
Daniel Osorio and
Paola Rondón-Villarreal and
Rodrigo Torres \pkgPeptides: A Package for Data Mining
of Antimicrobial Peptides . . . . . . . 4--14
Guy Abel \pkgfanplot: An R Package for
Visualising Sequential Distributions . . 15--23
Matthias Templ and
Alexander Kowarik and
Bernhard Meindl \pkgsparkTable: Generating Graphical
Tables for Websites and Documents with R 24--37
Matias D. Cattaneo and
Sebastian Calonico and
Rocio Titiunik \pkgrdrobust: An R Package for Robust
Inference in Regression-Discontinuity
Designs . . . . . . . . . . . . . . . . 38--51
Antonio Arcos and
David Molina and
Maria Giovanna Ranalli and
María del Mar Rueda \pkgFrames2: A Package for Estimation in
Dual Frame Surveys . . . . . . . . . . . 52--72
Robin Hankin The Complex Multivariate Gaussian
Distribution . . . . . . . . . . . . . . 73--80
Isabel Molina and
Yolanda Marhuenda \pkgsae: An R Package for Small Area
Estimation . . . . . . . . . . . . . . . 81--98
Yixuan Qiu \pkgshowtext: Using System Fonts in R
Graphics . . . . . . . . . . . . . . . . 99--108
Belchin Kostov and
Mónica Bécue-Bertaut and
François Husson Correspondence Analysis on Generalised
Aggregated Lexical Table (CA-GALT) in
the \pkgFactoMineR Package . . . . . . . 109--117
Shawn T. O'Neil Implementing Persistent $ O(1) $ Stacks
and Queues in R . . . . . . . . . . . . 118--126
Stefan Rödiger and
Micha\l Burdukiewicz and
Konstantin Blagodatskikh and
Michael Jahn and
Peter Schierack R as an Environment for Reproducible
Analysis of DNA Amplification
Experiments . . . . . . . . . . . . . . 127--150
Paul Murrell The \pkggridGraphics Package . . . . . . 151--162
John Muschelli and
Elizabeth M. Sweeney and
Martin Lindquist and
Ciprian M. Crainiceanu \pkgfslr: Connecting the FSL Software
with R . . . . . . . . . . . . . . . . . 163--175
Michael Baumgartner and
Alrik Thiem Identifying Complex Causal Dependencies
in Configurational Data with Coincidence
Analysis . . . . . . . . . . . . . . . . 176--184
Eric Hare and
Andreas Buja and
Heike Hofmann Manipulation of Discrete Random
Variables with \pkgdiscreteRV . . . . . 185--194
Russell V. Lenth Estimability Tools for Package
Developers . . . . . . . . . . . . . . . 195--199
Martin Mächler and
Kurt Hornik R Foundation News . . . . . . . . . . . 200
Kurt Hornik and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 201--226
The R.Core Team Changes in R . . . . . . . . . . . . . . 227--238
The Bioconductor Team News from the Bioconductor Project . . . 239--240
Bettina Grün Editorial . . . . . . . . . . . . . . . 4--4
Moudud Alam and
Lars Rönnegård and
Xia Shen Fitting Conditional and Simultaneous
Autoregressive Spatial Models in
\pkghglm . . . . . . . . . . . . . . . . 5--18
Robin Genuer and
Jean-Michel Poggi and
Christine Tuleau-Malot \pkgVSURF: an R Package for Variable
Selection Using Random Forests . . . . . 19--33
Fang Liu and
Yunchuan Kong \pkgzoib: an R Package for Bayesian
Inference for Beta Regression and
Zero/One Inflated Beta Regression . . . 34--51
Bent Nielsen \pkgapc: an R Package for
Age--Period--Cohort Analysis . . . . . . 52--64
Isabelle Charlier and
Davy Paindaveine and
Jérôme Saracco \pkgQuantifQuantile: an R Package for
Performing Quantile Regression Through
Optimal Quantization . . . . . . . . . . 65--80
Robin K. S. Hankin Numerical Evaluation of the Gauss
Hypergeometric Function with the
\pkghypergeo Package . . . . . . . . . . 81--88
Pablo J. Villacorta and
José A. Sáez \pkgSRCS: Statistical Ranking Color
Scheme for Visualizing Parameterized
Multiple Pairwise Comparisons with R . . 89--104
Ainhoa Vega-Bayo An R Package for the Panel Approach
Method for Program Evaluation: \pkgpampe 105--121
Kuo-Jung Lee and
Ray-Bing Chen \pkgBSGS: Bayesian Sparse Group
Selection . . . . . . . . . . . . . . . 122--133
Evelyne Vigneau and
Mingkun Chen and
El Mostafa Qannari \pkgClustVarLV: an R Package for the
Clustering of Variables Around Latent
Variables . . . . . . . . . . . . . . . 134--148
Francisco Charte and
David Charte Working with Multilabel Datasets in R:
The \pkgmldr Package . . . . . . . . . . 149--162
Richard Valliant and
Jill A. Dever and
Frauke Kreuter \pkgPracTools: Computations for Design
of Finite Population Samples . . . . . . 163--176
Kangwon Seo and
Rong Pan \pkgALTopt: an R Package for Optimal
Experimental Design of Accelerated Life
Testing . . . . . . . . . . . . . . . . 177--188
Matthew A. Nunes and
Dennis Prangle \pkgabctools: an R Package for Tuning
Approximate Bayesian Computation
Analyses . . . . . . . . . . . . . . . . 189--205
Juhui Wang and
Robert Faivre and
Hervé Richard and
Hervé Monod \pkgmtk: a General-Purpose and
Extensible R Environment for Uncertainty
and Sensitivity Analyses of Numerical
Experiments . . . . . . . . . . . . . . 206--226
Samuel E. Buttrey and
Lyn R. Whitaker \pkgtreeClust: an R Package for
Tree-Based Clustering Dissimilarities 227--236
Hideitsu Hino and
Ken Takano and
Noboru Murata \pkgmmpp: a Package for Calculating
Similarity and Distance Metrics for
Simple and Marked Temporal Point
Processes . . . . . . . . . . . . . . . 237--248
Michael C. Koohafkan and
Bassam A. Younis Open-Channel Computation with R . . . . 249--262
David Moriña and
Manuel Higueras and
Pedro Puig and
María Oliveira Generalized Hermite Distribution
Modelling with the R Package \pkghermite 263--274
Angel Rubio and
Fernando de Villar Code Profiling in R: a Review of
Existing Methods and an Introduction to
Package \pkgGUIProfiler . . . . . . . . 275--287
Martyn Plummer The R Consortium and the R Foundation 288--288
Torben Tvedebrink Conference Report: useR! 2015 . . . . . 289--290
The Bioconductor Team News from the Bioconductor Project . . . 291--292
The R Core Team Changes in R . . . . . . . . . . . . . . 293--297
Kurt Hornik and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 298--339
Michael Lawrence Editorial . . . . . . . . . . . . . . . 4--4
Ken J. Beath \pkgmetaplus: an R Package for the
Analysis of Robust Meta-Analysis and
Meta-Regression . . . . . . . . . . . . 5--16
Kamil Wais Gender Prediction Methods Based on First
Names with \pkggenderizeR . . . . . . . 17--37
Alexandre Brouste and
Jacques Istas and
Sophie Lambert-Lacroix Conditional Fractional Gaussian Fields
with the Package \pkgFieldSim . . . . . 38--47
Haydar Demirhan \pkgrTableICC: an R Package for Random
Generation of 22K and RC Contingency
Tables . . . . . . . . . . . . . . . . . 48--63
Patrick E. Brown Maps, Coordinate Reference Systems and
Visualising Geographic Data with
\pkgmapmisc . . . . . . . . . . . . . . 64--91
Lo\"\ic Yengo and
Julien Jacques and
Christophe Biernacki and
Mickael Canouil Variable Clustering in High-Dimensional
Linear Regression: The R Package
\pkgclere . . . . . . . . . . . . . . . 92--106
Maciej Eder and
Jan Rybicki and
Mike Kestemont Stylometry with R: a Package for
Computational Text Analysis . . . . . . 107--121
Daniel Linares and
Joan López-Moliner \pkgquickpsy: an R Package to Fit
Psychometric Functions for Multiple
Groups . . . . . . . . . . . . . . . . . 122--131
Marta Sestelo and
Nora M. Villanueva and
Luis Meira-Machado and
Javier Roca-Pardiñas \pkgFWDselect: an R Package for Variable
Selection in Regression Models . . . . . 132--148
Mitchell Joblin and
Wolfgang Mauerer An Interactive Survey Application for
Validating Social Network Analysis
Techniques . . . . . . . . . . . . . . . 149--158
Christopher T. Franck and
Jason A. Osborne Exploring Interaction Effects in
Two-Factor Studies using the hiddenf
Package in R . . . . . . . . . . . . . . 159--172
Jakob W. Messner and
Georg J. Mayr and
Achim Zeileis Heteroscedastic Censored and Truncated
Regression with \pkgcrch . . . . . . . . 173--181
Joshua N. Pritikin and
Karen M. Schmidt Model Builder for Item Factor Analysis
with \pkgOpenMx . . . . . . . . . . . . 182--203
Benedikt Gräler and
Edzer Pebesma and
Gerard Heuvelink Spatio-Temporal Interpolation using
\pkggstat . . . . . . . . . . . . . . . 204--218
Marcus W. Beck \pkgSWMPr: an R Package for Retrieving,
Organizing, and Analyzing Environmental
Data for Estuaries . . . . . . . . . . . 219--232
Haydar Demirhan and
Nihan Bitirim \pkgCryptRndTest: an R Package for
Testing the Cryptographic Randomness . . 233--247
Borja Calvo and
Guzmán Santafé \pkgscmamp: Statistical Comparison of
Multiple Algorithms in Multiple Problems 248--256
Weihua An and
Yu-Hsin Liu \pkgkeyplayer: an R Package for Locating
Key Players in Social Networks . . . . . 257--268
Michael J. North \pkgSchemaOnRead: a Package for
Schema-on-Read in R . . . . . . . . . . 269--275
Thomas J. Leeper Crowdsourced Data Preprocessing with R
and Amazon Mechanical Turk . . . . . . . 276--288
Luca Scrucca and
Michael Fop and
T. Brendan Murphy and
Adrian E. Raftery \pkgmclust 5: Clustering, Classification
and Density Estimation Using Gaussian
Finite Mixture Models . . . . . . . . . 289--317
Tibor Szkaliczki \pkgclustering.sc.dp: Optimal Clustering
with Sequential Constraint by Using
Dynamic Programming . . . . . . . . . . 318--327
Chenyue W. Hu and
Amina A. Qutub \pkgprogenyClust: an R package for
Progeny Clustering . . . . . . . . . . . 328--338
Göknur Giner and
Gordon K. Smyth \pkgstatmod: Probability Calculations
for the Inverse Gaussian Distribution 339--351
Erik S. Wright Using \pkgDECIPHER v2.0 to Analyze Big
Biological Sequence Data in R . . . . . 352--359
Oliver Keyes and
Bob Rudis and
Jay Jacobs R Packages to Aid in Handling Web Access
Logs . . . . . . . . . . . . . . . . . . 360--366
Jos Feys Nonparametric Tests for the Interaction
in Two-way Factorial Designs Using R . . 367--378
Osman Dag and
Ceylan Yozgatligil \pkgGMDH: an R Package for Short Term
Forecasting via GMDH-Type Neural Network
Algorithms . . . . . . . . . . . . . . . 379--386
Luke A. Winslow and
Scott Chamberlain and
Alison P. Appling and
Jordan S. Read \pkgsbtools: a Package Connecting R to
Cloud-based Data for Collaborative
Online Research . . . . . . . . . . . . 387--398
Joe Rickert Conference Report: useR! 2016 . . . . . 399--401
Kurt Hornik and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 402--403
The Bioconductor Team News from the Bioconductor Project . . . 404--405
The R Core Team Changes in R . . . . . . . . . . . . . . 406--415
Michael Lawrence Editorial . . . . . . . . . . . . . . . 4--4
Nathalie C. Stòer and
Sven Ove Samuelsen \pkgmultipleNCC: Inverse Probability
Weighting of Nested Case-Control Data 5--18
Christopher M. Moore and
Christopher R. Stieha and
Ben C. Nolting and
Maria K. Cameron and
Karen C. Abbott \pkgQPot: an R Package for Stochastic
Differential Equation Quasi-Potential
Analysis . . . . . . . . . . . . . . . . 19--38
Marco Antoniotti and
Giulio Caravagna and
Luca De Sano and
Alex Graudenzi and
Giancarlo Mauri and
Bud Mishra and
Daniele Ramazzotti Design of the \pkgTRONCO BioConductor
Package for TRanslational ONCOlogy . . . 39--59
Miguel R. Guevara and
Dominik Hartmann and
Marcelo Mendoza \pkgdiverse: an R Package to Analyze
Diversity in Complex Systems . . . . . . 60--78
Anestis Touloumis Simulating Correlated Binary and
Multinomial Responses under Marginal
Model Specification: The
\pkgSimCorMultRes Package . . . . . . . 79--91
Loren Collingwood and
Kassra Oskooii and
Sergio Garcia-Rios and
Matt Barreto \pkgeiCompare: Comparing Ecological
Inference Estimates across EI and EI:RC 92--101
Claudia Vitolo and
Matthew Fry and
Wouter Buytaert \pkgrnrfa: an R package to Retrieve,
Filter and Visualize Data from the UK
National River Flow Archive . . . . . . 102--116
Marco Geraci \pkgQtools: a Collection of Models and
Tools for Quantile Inference . . . . . . 117--138
Silvia Bacci and
Francesco Bartolucci Two-Tier Latent Class IRT Models in R 139--166
Rosaria Lombardo and
Eric J. Beh Variants of Simple Correspondence
Analysis . . . . . . . . . . . . . . . . 167--184
Victor Chernozhukov and
Chris Hansen and
Martin Spindler \pkghdm: High-Dimensional Metrics . . . 185--199
Derek S. Young Normal Tolerance Interval Procedures in
the \pkgtolerance Package . . . . . . . 200--212
Dincer Goksuluk and
Selcuk Korkmaz and
Gokmen Zararsiz and
A. Ergun Karaagaoglu \pkgeasyROC: an Interactive Web-tool for
ROC Curve Analysis Using R Language
Environment . . . . . . . . . . . . . . 213--230
Kyle Walker \pkgtigris: an R Package to Access and
Work with Geographic Data from the US
Census Bureau . . . . . . . . . . . . . 231--242
Barret Schloerke and
Hadley Wickham and
Dianne Cook and
Heike Hofmann Escape from Boxland . . . . . . . . . . 243--257
Wanbitching E. Wansouwé and
Sobom M. Somé and
Célestin C. Kokonendji \pkgAke: an R Package for Discrete and
Continuous Associated Kernel Estimations 258--276
Michael C. Sachs and
Erin E. Gabriel An Introduction to Principal Surrogate
Evaluation with the pseval Package . . . 277--292
Paul Deveau and
Emmanuel Barillot and
Valentina Boeva and
Andrei Zinovyev and
Eric Bonnet Calculating Biological Module Enrichment
or Depletion and Visualizing Data on
Large-scale Molecular Maps with
ACSNMineR and RNaviCell Packages . . . . 293--306
Ángel M. García and
Francisco Charte and
Pedro González and
Cristóbal J. Carmona and
María J. del Jesus Subgroup Discovery with Evolutionary
Fuzzy Systems in R: The SDEFSR Package 307--323
Maria Pitsillou and
Konstantinos Fokianos \pkgdCovTS: Distance
Covariance/Correlation for Time Series 324--340
Marcel Schweiker \pkgcomf: an R Package for Thermal
Comfort Studies . . . . . . . . . . . . 341--351
Guillermo Federico Olmedo and
Samuel Ortega-Farías and
Daniel de la Fuente-Sáiz and
David Fonseca- Luego and
Fernando Fuentes-Peñailillo \pkgwater: Tools and Functions to
Estimate Actual Evapotranspiration Using
Land Surface Energy Balance Models in R 352--369
Michael Lipsitz and
Alexandre Belloni and
Victor Chernozhukov and
Iván Fernández-Val \pkgquantreg.nonpar: an R Package for
Performing Nonparametric Series Quantile
Regression . . . . . . . . . . . . . . . 370--381
Sven Koitka and
Christoph M. Friedrich \pkgnmfgpu4R: GPU-Accelerated
Computation of the Non-Negative Matrix
Factorization (NMF) Using CUDA Capable
Hardware . . . . . . . . . . . . . . . . 382--392
Patrick Roocks Computing Pareto Frontiers and Database
Preferences with the rPref Package . . . 393--404
Nuno Fachada and
João Rodrigues and
Vitor V. Lopes and
Rui C. Martins and
Agostinho C. Rosa \pkgmicompr: an R Package for
Multivariate Independent Comparison of
Observations . . . . . . . . . . . . . . 405--420
Xiang-Wei Zhu and
Jian-Yi Chen \pkgmixtox: an R Package for Mixture
Toxicity Assessment . . . . . . . . . . 421--433
Itziar Irigoien and
Francesc Mestres and
Concepcion Arenas Weighted Distance Based Discriminant
Analysis: The R Package \pkgWeDiBaDis 434--450
Usue Mori and
Alexander Mendiburu and
Jose A. Lozano Distance Measures for Time Series in R:
The TSdist Package . . . . . . . . . . . 451--459
Luis Meira-Machado and
Marta Sestelo \pkgcondSURV: an R Package for the
Estimation of the Conditional Survival
Function for Ordered Multivariate
Failure Time Data . . . . . . . . . . . 460--473
Yuan Tang and
Masaaki Horikoshi and
Wenxuan Li \pkgggfortify: Unified Interface to
Visualize Statistical Results of Popular
R Packages . . . . . . . . . . . . . . . 474--485
Edzer Pebesma and
Thomas Mailund and
James Hiebert Measurement Units in R . . . . . . . . . 486--494
Muhammad Imdadullah and
Muhammad Aslam and
Saima Altaf \pkgmctest: an R Package for Detection
of Collinearity among Regressors . . . . 495--505
Torsten Hothorn R Foundation News . . . . . . . . . . . 506--506
Kurt Hornik and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 507--509
The Bioconductor Core Team News from the Bioconductor Project . . . 510--510
The R Core Team Changes in R . . . . . . . . . . . . . . 511--514
Roger Bivand Editorial . . . . . . . . . . . . . . . 4--5
Taylor Arnold and
Michael J. Kane and
Simon Urbanek \pkgiotools: High-Performance I/O Tools
for R . . . . . . . . . . . . . . . . . 6--13
Martin Otava and
Rudradev Sengupta and
Ziv Shkedy and
Dan Lin and
Setia Pramana and
Tobias Verbeke and
Philippe Haldermans and
Ludwig A. Hothorn and
Daniel Gerhard and
Rebecca M. Kuiper and
Florian Klinglmueller and
Adetayo Kasim \pkgIsoGeneGUI: Multiple Approaches for
Dose-Response Analysis of Microarray
Data Using R . . . . . . . . . . . . . . 14--26
Sam Tyner and
François Briatte and
Heike Hofmann Network Visualization with \pkgggplot2 27--59
Mark Pickup and
Paul Gustafson and
Davor Cubranic and
Geoffrey Evans \pkgOrthoPanels: an R Package for
Estimating a Dynamic Panel Model with
Fixed Effects Using the Orthogonal
Reparameterization Approach . . . . . . 60--76
Randall Pruim and
Daniel T. Kaplan and
Nicholas J. Horton The \pkgmosaic Package: Helping Students
to Think with Data Using R . . . . . . . 77--102
Jakob Bossek \pkgsmoof: Single- and Multi-Objective
Optimization Test Functions . . . . . . 103--113
Daniel Osorio and
Janneth González and
Andrés Pinzón \pkgminval: an R package for MINimal
VALidation of Stoichiometric Reactions 114--123
G. Brooke Anderson and
Colin Eason and
Elizabeth A. Barnes Working with Daily Climate Model Output
Data in R and the \pkgfutureheatwaves
Package . . . . . . . . . . . . . . . . 124--137
Sean S. Downey and
Guowei Sun and
Peter Norquest \pkgalineR: an R Package for Optimizing
Feature-Weighted Alignments and
Linguistic Distances . . . . . . . . . . 138--152
Jim Duggan Implementing a Metapopulation Bass
Diffusion Model using the R Package
\pkgdeSolve . . . . . . . . . . . . . . 153--163
Christian Margreitter and
Chris Oostenbrink \pkgMDplot: Visualise Molecular Dynamics 164--186
Luca Scrucca On Some Extensions to \pkgGA Package:
Hybrid Optimisation, Parallelisation and
Islands Evolution . . . . . . . . . . . 187--206
Steffen Moritz and
Thomas Bartz-Beielstein \pkgimputeTS: Time Series Missing Value
Imputation in R . . . . . . . . . . . . 207--218
Pablo Morales and
Julián Luengo and
Luís P. F. Garcia and
Ana C. Lorena and
André C. P. L. F. de Carvalho and
Francisco Herrera The \pkgNoiseFiltersR Package: Label
Noise Preprocessing in R . . . . . . . . 219--228
Razieh Nabi and
Xiaogang Su \pkgcoxphMIC: an R Package for Sparse
Estimation of Cox Proportional Hazards
Models via Approximated Information
Criteria . . . . . . . . . . . . . . . . 229--238
Simon H. Heisterkamp and
Engelbertus van Willigen and
Paul-Matthias Diderichsen and
John Maringwa Update of the \pkgnlme Package to Allow
a Fixed Standard Deviation of the
Residual Error . . . . . . . . . . . . . 239--251
Hye-Min Choe and
Mijeong Kim and
Eun-Kyung Lee \pkgEMSaov: an R Package for the
Analysis of Variance with the Expected
Mean Squares and its Shiny Application 252--261
Mónica López-Ratón and
Elisa M. Molanes-López and
Emilio Letón and
Carmen Cadarso-Suárez \pkgGsymPoint: an R Package to Estimate
the Generalized Symmetry Point, an
Optimal Cut-off Point for Binary
Classification in Continuous Diagnostic
Tests . . . . . . . . . . . . . . . . . 262--283
Joshua P. French \pkgautoimage: Multiple Heat Maps for
Projected Coordinates . . . . . . . . . 284--297
Thomas Wieland Market Area Analysis for Retail and
Service Locations with MCI . . . . . . . 298--323
Neeraj Bokde and
Gualberto Asencio-Cortés and
Francisco Martínez-Álvarez and
Kishore Kulat \pkgPSF: Introduction to R Package for
Pattern Sequence Based Forecasting
Algorithm . . . . . . . . . . . . . . . 324--333
Adrien Mazoyer and
Rémy Drouilhet and
Stéphane Despréaux and
Bernard Ycart \pkgflan: an R Package for Inference on
Mutation Models . . . . . . . . . . . . 334--351
Philipp Probst and
Quay Au and
Giuseppe Casalicchio and
Clemens Stachl and
Bernd Bischl Multilabel Classification with R Package
\pkgmlr . . . . . . . . . . . . . . . . 352--369
Mingli Chen and
Victor Chernozhukov and
Iván Fernández-Val and
Blaise Melly \pkgCounterfactual: an R Package for
Counterfactual Analysis . . . . . . . . 370--384
Leo Lahti and
Janne Huovari and
Markus Kainu and
Przemys\law Biecek Retrieval and Analysis of Eurostat Open
Data with the \pkgeurostat Package . . . 385--392
Gul Inan and
Lan Wang \pkgPGEE: an R Package for Analysis of
Longitudinal Data with High-Dimensional
Covariates . . . . . . . . . . . . . . . 393--402
Panagiotis Papastamoulis and
Magnus Rattray \pkgBayesBinMix: an R Package for Model
Based Clustering of Multivariate Binary
Data . . . . . . . . . . . . . . . . . . 403--420
Brandon M. Greenwell \pkgpdp: an R Package for Constructing
Partial Dependence Plots . . . . . . . . 421--436
Michel Lang \pkgcheckmate: Fast Argument Checks for
Defensive R Programming . . . . . . . . 437--445
Ping-Yang Chen and
Ching-Chuan Chen and
Chun-Hao Yang and
Sheng-Mao Chang and
Kuo-Jung Lee \pkgmilr: Multiple-Instance Logistic
Regression with Lasso Penalty . . . . . 446--457
Axel Gandy and
Jan Terje Kvalòy \pkgspcadjust: an R Package for
Adjusting for Estimation Error in
Control Charts . . . . . . . . . . . . . 458--476
Rense Nieuwenhuis and
Manfred te Grotenhuis and
Ben Pelzer Weighted Effect Coding for Observational
Data with \pkgwec . . . . . . . . . . . 477--485
G. Brooke Anderson and
Dirk Eddelbuettel Hosting Data Packages via \pkgdrat: a
Case Study with Hurricane Exposure Data 486--497
Torsten Hothorn R Foundation News . . . . . . . . . . . 498--500
Maciej Ber\kesewicz and
Adolfo Alvarez and
Przemys\law Biecek and
Marcin K. Dyderski and
Marcin Kosinski and
Jakub Nowosad and
Kamil Rotter and
Alicja Szabelska-Ber\kesewicz and
Marcin Szymkowiak and
\Lukasz Wawrowski and
Joanna Zyprych-Walczak Conference Report: European R Users
Meeting 2016 . . . . . . . . . . . . . . 501--504
Kurt Hornik and
Uwe Ligges and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 505--507
Bioconductor Core Team News from the Bioconductor Project . . . 508--508
The R Core Team Changes in R . . . . . . . . . . . . . . 509--521
Roger Bivand Editorial . . . . . . . . . . . . . . . 4--5
Heather Savoy and
Falk Heße and
Yoram Rubin \pkganchoredDistr: a Package for the
Bayesian Inversion of Geostatistical
Parameters with Multi-type and
Multi-scale Data . . . . . . . . . . . . 6--17
Nicolae Teodor Melita and
Stefan Holban \pkgdGAselID: an R Package for Selecting
a Variable Number of Features in High
Dimensional Data . . . . . . . . . . . . 18--34
Nathan Medina-Rodríguez and
Ángelo Santana Allele Imputation and Haplotype
Determination from Databases Composed of
Nuclear Families . . . . . . . . . . . . 35--55
Patrick Breheny and
Woodrow Burchett Visualization of Regression Models Using
\pkgvisreg . . . . . . . . . . . . . . . 56--71
Guillermo Basulto-Elias and
Alicia Carriquiry and
Kris De Brabanter and
Daniel J. Nordman \pkgfourierin: an R package to compute
Fourier integrals . . . . . . . . . . . 72--83
Giorgio Alfredo Spedicato Discrete Time Markov Chains with R . . . 84--104
Melanie Prague and
Rui Wang and
Victor De Gruttola \pkgCRTgeeDR: an R Package for Doubly
Robust Generalized Estimating Equations
Estimations in Cluster Randomized Trials
with Missing Data . . . . . . . . . . . 105--115
Pedro Cañadilla Jiménez and
Yolanda Román Montoya \pkgqueueing: a Package For Analysis of
Queueing Networks and Models in R . . . 116--126
Marius Pfeuffer \pkgctmcd: an R Package for Estimating
the Parameters of a Continuous-Time
Markov Chain from Discrete-Time Data . . 127--141
Tyson S. Barrett and
Emily Brignone Furniture for Quantitative Scientists 142--148
Nicholas Syring and
Meng Li \pkgBayesBD: an R Package for Bayesian
Inference on Image Boundaries . . . . . 149--162
Michael Hahsler \pkgarulesViz: Interactive Visualization
of Association Rules with R . . . . . . 163--175
Xuwen Zhu and
Volodymyr Melnykov \pkgManlyMix: an R Package for Manly
Mixture Modeling . . . . . . . . . . . . 176--197
Aurélie Siberchicot and
Alice Julien-Laferri\`ere and
Anne-Béatrice Dufour and
Jean Thioulouse and
Stéphane Dray \pkgadegraphics: an S4 Lattice-Based
Package for the Representation of
Multivariate Data . . . . . . . . . . . 198--212
Chao Wang and
Kung-Sik Chan \pkgcarx: an R Package to Estimate
Censored Autoregressive Time Series with
Exogenous Covariates . . . . . . . . . . 213--231
Muhammad Imdadullah and
Muhammad Aslam and
Saima Altaf \pkgliureg: a Comprehensive R Package
for the Liu Estimation of Linear
Regression Model with Collinear
Regressors . . . . . . . . . . . . . . . 232--247
Taylor Arnold A Tidy Data Model for Natural Language
Processing using \pkgcleanNLP . . . . . 248--267
Josmar Mazucheli and
André Felipe B. Menezes and
Saralees Nadarajah \pkgmle.tools: an R Package for Maximum
Likelihood Bias Correction . . . . . . . 268--290
Rafael Benítez and
Vicente J. Bolós and
José-Luis Toca-Herrera \pkgafmToolkit: an R Package for
Automated AFM Force-Distance Curves
Analysis . . . . . . . . . . . . . . . . 291--308
Pablo J. Villacorta The welchADF Package for Robust
Hypothesis Testing in Unbalanced
Multivariate Mixed Models with
Heteroscedastic and Non-normal Data . . 309--328
Hideitsu Hino \pkgider: Intrinsic Dimension Estimation
with R . . . . . . . . . . . . . . . . . 329--341
Annabel Allison and
Ian R. White and
Simon Bond \pkgrpsftm: an R Package for Rank
Preserving Structural Failure Time
Models . . . . . . . . . . . . . . . . . 342--353
Robert J. Gutierrez and
Bradley C. Boehmke and
Kenneth W. Bauer and
Cade M. Saie and
Trevor J. Bihl \pkganomalyDetection: Implementation of
Augmented Network Log Anomaly Detection
Procedures . . . . . . . . . . . . . . . 354--365
Ruby Sharma and
Sajal Kumar and
Hua Zhong and
Mingzhou Song Simulating Noisy, Nonparametric, and
Multivariate Discrete Patterns . . . . . 366--377
Mollie E. Brooks and
Kasper Kristensen and
Koen J. van Benthem and
Arni Magnusson and
Casper W. Berg and
Anders Nielsen and
Hans J. Skaug and
Martin Mächler and
Benjamin M. Bolker \pkgglmmTMB Balances Speed and
Flexibility Among Packages for
Zero-inflated Generalized Linear Mixed
Modeling . . . . . . . . . . . . . . . . 378--400
Christopher Gandrud and
Laron K. Williams Simulating Probabilistic Long-Term
Effects in Models with Temporal
Dependence . . . . . . . . . . . . . . . 401--408
Jannes Muenchow and
Patrick Schratz and
Alexander Brenning \pkgRQGIS: Integrating R with QGIS for
Statistical Geocomputing . . . . . . . . 409--428
Robin K. S. Hankin Partial Rank Data with the hyper2
Package: Likelihood Functions for
Generalized Bradley--Terry Models . . . 429--439
Brice Ozenne and
Anne Lyngholm Sòrensen and
Thomas Scheike and
Christian Torp-Pedersen and
Thomas Alexander Gerds \pkgriskRegression: Predicting the Risk
of an Event using Cox Regression Models 440--460
Mirta Ben\vsic\acute and
Petar Taler and
Safet Hamedovic\acute and
Emmanuel Karlo Nyarko and
Kristian Sabo \pkgLeArEst: Length and Area Estimation
from Data Measured with Additive Error 461--473
Andreas Beger and
Daniel W. Hill, Jr. and
Nils. W. Metternich and
Shahryar Minhas and
Michael D. Ward Splitting It Up: The \pkgspduration
Split-Population Duration Regression
Package for Time-Varying Covariates . . 474--486
Clifford Anderson-Bergman \pkgBayesian Regression Models for
Interval-censored Data in R . . . . . . 487--498
Travis Canida and
John Ihrie \pkgopenEBGM: an R Implementation of the
Gamma-Poisson Shrinker Data Mining Model 499--519
David J. Winter \pkgrentrez: an R package for the NCBI
eUtils API . . . . . . . . . . . . . . . 520--526
Carl Boettiger and
Dirk Eddelbuettel An Introduction to Rocker: Docker
Containers for R . . . . . . . . . . . . 527--536
Tobias Verbeke Conference Report: useR!2017 . . . . . . 537--538
Nicolas Baradel and
Christophe Dutang and
Caroline Hillairet Conference Report: R in Insurance 2017 539--540
Stella Bollmann and
Dianne Cook and
Jasmine Dumas and
John Fox and
Julie Josse and
Oliver Keyes and
Carolin Strobl and
Heather Turner and
Rudolf Debelak Forwards Column . . . . . . . . . . . . 541--552
Matthias Gehrke and
Reed Davis and
Norman Matloff and
Paul Thompson and
Tiffany Chen and
Emily Watkins and
Laurel Beckett R Teaching Column . . . . . . . . . . . 553--562
Torsten Hothorn R Foundation News . . . . . . . . . . . 563--563
Kurt Hornik and
Uwe Ligges and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 564--566
Bioconductor Core Team News from the Bioconductor Project . . . 567--567
The R Core Team Changes in R . . . . . . . . . . . . . . 568--570
John Verzani Editorial . . . . . . . . . . . . . . . 4--5
Jonathan Gelfond and
Martin Goros and
Brian Hernandez and
Alex Bokov A System for an Accountable Data
Analysis Process in R . . . . . . . . . 6--21
Jennifer Broatch and
Jennifer Green and
Andrew Karl \pkgRealVAMS: an R Package for Fitting a
Multivariate Value-added Model (VAM) . . 22--30
Duygu Çelik and
Murat Tiniç \pkgInfoTrad: an R package for
estimating the probability of informed
trading . . . . . . . . . . . . . . . . 31--42
Waldemar W. Koczkodaj and
Feng Li and
Alicja Wolny--Dominiak \pkgRatingScaleReduction package:
stepwise rating scale item reduction
without predictability loss . . . . . . 43--55
Zachary M. Jones \pkgmmpf: Monte-Carlo Methods for
Prediction Functions . . . . . . . . . . 56--60
Daniel Salfran and
Martin Spiess Generalized Additive Model Multiple
Imputation by Chained Equations With
Package \pkgImputeRobust . . . . . . . . 61--72
Juhyun Kim and
Yiwen Zhang and
Joshua Day and
Hua Zhou \pkgMGLM: an R Package for Multivariate
Categorical Data Analysis . . . . . . . 73--90
Yuri R. Fonseca and
Ricardo P. Masini and
Marcelo C. Medeiros and
Gabriel F. R. Vasconcelos \pkgArCo: an R package to Estimate
Artificial Counterfactuals . . . . . . . 91--108
Cathrine Ulla Jensen and
Toke Emil Panduro \pkgPanJen: an R package for Ranking
Transformations in a Linear Regression 109--121
M. Iturbide and
J. Bedia and
J. M. Gutiérrez Tackling Uncertainties of Species
Distribution Model Projections with
Package \pkgmopa . . . . . . . . . . . . 122--139
Jongho Im and
In Ho Cho and
Jae Kwang Kim \pkgFHDI: an R Package for Fractional
Hot Deck Imputation . . . . . . . . . . 140--154
Gonzalo Garcia-Donato and
Anabel Forte \pkgBayesian Testing, Variable Selection
and Model Averaging in Linear Models
using R with \pkgBayesVarSel . . . . . . 155--174
Osman Dag and
Anil Dolgun and
Naime Meric Konar \pkgonewaytests: an R Package for
One-Way Tests in Independent Groups
Designs . . . . . . . . . . . . . . . . 175--199
Alejandro Saavedra-Nieves \pkgInventorymodel: an R Package for
Centralized Inventory Problems . . . . . 200--217
Marcus W. Beck and
Neeraj Bokde and
Gualberto Asencio-Cortés and
Kishore Kulat R Package \pkgimputeTestbench to Compare
Imputation Methods for Univariate Time
Series . . . . . . . . . . . . . . . . . 218--233
Aurore Archimbaud and
Klaus Nordhausen and
Anne Ruiz-Gazen \pkgICSOutlier: Unsupervised Outlier
Detection for Low-Dimensional
Contamination Structure . . . . . . . . 234--250
David Bucklin and
Mathieu Basille \pkgrpostgis: Linking R with a PostGIS
Spatial Database . . . . . . . . . . . . 251--268
Enio G. Jelihovschi and
Ivan Bezerra Allaman \pkglba: an R Package for Latent Budget
Analysis . . . . . . . . . . . . . . . . 269--287
Michael J. Wurm and
Paul J. Rathouz Semiparametric Generalized Linear Models
with the \pkggldrm Package . . . . . . . 288--307
Andrzej Palczewski \pkgLP Algorithms for Portfolio
Optimization: The PortfolioOptim Package 308--327
Angel Berihuete and
Carmen D. Ramos and
Miguel A. Sordo Welfare, Inequality and Poverty Analysis
with \pkgrtip: an Approach Based on
Stochastic Dominance . . . . . . . . . . 328--341
Guido Kraemer and
Markus Reichstein and
Miguel D. Mahecha \pkgdimRed and coRanking --- Unifying
Dimensionality Reduction in R . . . . . 342--358
Hui Tang and
Elizabeth L. Day and
Molly B. Atkinson and
Norbert J. Pienta \pkgGrpString: an R Package for Analysis
of Groups of Strings . . . . . . . . . . 359--369
Bilge Bas\cer and
Nalan Cinemre Epistemic Game Theory: Putting
Algorithms to Work . . . . . . . . . . . 370--380
Brandon M. Greenwell and
Andrew J. McCarthy and
Bradley C. Boehmke and
Dungang Liu Residuals and Diagnostics for Binary and
Ordinal Regression Models: an
Introduction to the \pkgsure Package . . 381--394
Paul-Christian Bürkner Advanced Bayesian Multilevel Modeling
with the R Package brms . . . . . . . . 395--411
Césaire J. K. Fouodo and
Inke R. König and
Claus Weihs and
Andreas Ziegler and
Marvin N. Wright Support Vector Machines for Survival
Analysis with R . . . . . . . . . . . . 412--423
Barak Brill and
Yair Heller and
Ruth Heller Nonparametric Independence Tests and
k-sample Tests for Large Sample Sizes
Using Package \pkgHHG . . . . . . . . . 424--438
Edzer Pebesma Simple Features for R: Standardized
Support for Spatial Vector Data . . . . 439--446
Stéphane Blondeau Da Silva and
Anne Da Silva \pkgPstat: an R Package to Assess
Population Differentiation in Phenotypic
Traits . . . . . . . . . . . . . . . . . 447--454
Timothy Barry Collections in R: Review and Proposal 455--471
Boxiang Liu and
Thomas Quertermous Approximating the Sum of Independent
Non-Identical Binomial Random Variables 472--483
Edmund Jones \pkgcchs: an R Package for Stratified
Case-Cohort Studies . . . . . . . . . . 484--494
Paula Moraga Small Area Disease Risk Estimation and
Visualization Using R . . . . . . . . . 495--506
Ioana-Elena Oana and
Carsten Q. Schneider \pkgSetMethods: an Add-on R Package for
Advanced QCA . . . . . . . . . . . . . . 507--533
Martin Happ and
Solomon W. Harrar and
Arne C. Bathke \pkgHRM: an R Package for Analysing
High-dimensional Multi-factor Repeated
Measures . . . . . . . . . . . . . . . . 534--548
Gergely Daróczi Conference Report: eRum 2018 . . . . . . 549--550
Fernando P. Mayer and
Walmes M. Zeviani and
Wagner H. Bonat and
Elias T. Krainski and
Paulo J. Ribeiro, Jr. R Day report . . . . . . . . . . . . . . 551--554
Torsten Hothorn R Foundation News . . . . . . . . . . . 555--555
Kurt Hornik and
Uwe Ligges and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 556--559
Bioconductor Core Team News from the Bioconductor Project . . . 560--560
The R Core Team Changes in R . . . . . . . . . . . . . . 561--570
John Verzani Editorial . . . . . . . . . . . . . . . 4--6
Robin Lovelace and
Richard Ellison \pkgstplanr: a Package for Transport
Planning . . . . . . . . . . . . . . . . 7--23
Adriano Rivolli and
Andre C. P. L. F. de Carvalho The \pkgutiml Package: Multi-label
Classification in R . . . . . . . . . . 24--37
Juri Hinz and
Jeremy Yee \pkgrcss: R package for optimal convex
stochastic switching . . . . . . . . . . 38--54
Sonia Pérez-Fernández and
Pablo Martínez-Camblor and
Peter Filzmoser and
Norberto Corral \pkgnsROC: an R package for Non-Standard
ROC Curve Analysis . . . . . . . . . . . 55--74
Renata Tiene de Carvalho Yokota and
Caspar W. N. Looman and
Wilma Johanna Nusselder and
Herman Van Oyen and
Geert Molenberghs \pkgaddhaz: Contribution of Chronic
Diseases to the Disability Burden Using
R . . . . . . . . . . . . . . . . . . . 75--94
Yuzhou Chen and
Yulia R. Gel and
Vyacheslav Lyubchich and
Kusha Nezafati \pkgSnowboot: Bootstrap Methods for
Network Inference . . . . . . . . . . . 95--113
Samantha Duchscherer and
Robert Stewart and
Marie Urban \pkgrevengc: an R package to Reverse
Engineer Summarized Data . . . . . . . . 114--123
Jae Keun Yoo Basis-Adaptive Selection Algorithm in
\pkgdr-package . . . . . . . . . . . . . 124--132
Talitha F. Speranza and
Pedro C. Ferreira and
Jonatha A. da Costa \pkgSARIMA Analysis and Automated Model
Reports with \pkgBETS, an R Package . . 133--147
Jari Miettinen and
Klaus Nordhausen and
Sara Taskinen \pkgfICA: FastICA Algorithms and Their
Improved Variants . . . . . . . . . . . 148--158
Yanming Li and
Brenda W. Gillespie and
Kerby Shedden and
John A. Gillespie Profile Likelihood Estimation of the
Correlation Coefficient in the Presence
of Left, Right or Interval Censoring and
Missing Data . . . . . . . . . . . . . . 159--179
Kasia Sawicka and
Gerard B. M. Heuvelink and
Dennis J. J. Walvoort Spatial Uncertainty Propagation Analysis
with the \pkgspup R Package . . . . . . 180--199
Gero Szepannek \pkgclustMixType: User-Friendly
Clustering of Mixed-Type Data in R . . . 200--208
Roman Olson and
Kelsey L. Ruckert and
Won Chang and
Klaus Keller and
Murali Haran and
Soon-Il An \pkgStilt: Easy Emulation of Time Series
AR(1) Computer Model Output in
Multidimensional Parameter Space . . . . 209--225
Vlad Stefan Barbu and
Caroline Bérard and
Dominique Cellier and
Mathilde Sautreuil and
Nicolas Vergne \pkgSMM: an R Package for Estimation and
Simulation of Discrete-time semi-Markov
Models . . . . . . . . . . . . . . . . . 226--247
Alexandre Almeida and
Adam Loy and
Heike Hofmann \pkgggplot2 Compatible Quantile-Quantile
Plots in R . . . . . . . . . . . . . . . 248--261
Christoph E. Weiss and
Eran Raviv and
Gernot Roetzer Forecast Combinations in R using the
\pkgForecastComb Package . . . . . . . . 262--281
Jeffrey C. Miecznikowski and
En-shuo Hsu and
Yanhua Chen and
Albert Vexler \pkgtestforDEP: an R Package for Modern
Distribution-free Tests and
Visualization Tools for Independence . . 282--294
Joshua Lambert and
Liyu Gong and
Corrine F. Elliott and
Katherine Thompson and
Arnold Stromberg \pkgrFSA: an R Package for Finding Best
Subsets and Interactions . . . . . . . . 295--308
John Mount and
Nina Zumel \pkgDot-Pipe: an S3 Extensible Pipe for
R . . . . . . . . . . . . . . . . . . . 309--316
Leyla Azarang and
Manuel Oviedo de la Fuente \pkgidmTPreg: Regression Model for
Progressive Illness Death Data . . . . . 317--325
Muhammad Imdad Ullah and
Muhammad Aslam and
Saima Altaf \pkglmridge: a Comprehensive R Package
for Ridge Regression . . . . . . . . . . 326--346
Paul F. Evangelista and
David Beskow Geospatial Point Density . . . . . . . . 347--356
Adrian Dusa Consistency Cubes: a fast, efficient
method for exact Boolean minimization 357--370
Adam Rahman \pkgsdpt3r: Semidefinite Quadratic
Linear Programming in R . . . . . . . . 371--394
Mateusz Staniak and
Przemys\law Biecek Explanations of Model Predictions with
\pkglive and \pkgbreakDown Packages . . 395--409
David Ardia and
Kris Boudt and
Leopoldo Catania Downside Risk Evaluation with the R
Package \pkgGAS . . . . . . . . . . . . 410--421
Alexander P. Christensen \pkgNetworkToolbox: Methods and Measures
for Brain, Cognitive, and Psychometric
Network Analysis in R . . . . . . . . . 422--439
Floid R. Gilbert and
David B. Dahl \pkgjsr223: a Java Platform Integration
for R with Programming Languages Groovy,
JavaScript, JRuby, Jython, and Kotlin 440--454
Bojan Mihaljevic\acute and
Concha Bielza and
Pedro Larrañaga \pkgbnclassify: Learning Bayesian
Network Classifiers . . . . . . . . . . 455--468
Soren Jordan and
Andrew Q. Philips Dynamic Simulation and Testing for
Single-Equation Cointegrating and
Stationary Autoregressive Distributed
Lag Models . . . . . . . . . . . . . . . 469--488
Michael Yeomans and
Alejandro Kantor and
Dustin Tingley The politeness Package: Detecting
Politeness in Natural Language . . . . . 489--502
Patrícia Martinková and
Adéla Drabinová \pkgShinyItemAnalysis for Teaching
Psychometrics and to Enforce Routine
Analysis of Educational Tests . . . . . 503--515
Travers Ching and
Dirk Eddelbuettel \pkgRcppMsgPack: MessagePack Headers and
Interface Functions for R . . . . . . . 516--525
Georgios Papageorgiou \pkgBNSP: an R Package for Fitting
Bayesian Semiparametric Regression
Models and Variable Selection . . . . . 526--548
Iñaki Ucar and
Edzer Pebesma and
Arturo Azcorra Measurement Errors in R . . . . . . . . 549--557
Julia Silge and
John C. Nash and
Spencer Graves Navigating the R Package Universe . . . 558--563
Laura Acion and
Natalia da Silva and
Riva Quiroga Conference Report: LatinR 2018 . . . . . 564--566
Ariel Levy and
Luciane F. Alcoforado and
Orlando Celso Longo Conference Report: SER III . . . . . . . 567--571
Micha\l Burdukiewicz and
Marta Karas and
Leon Eyrich Jessen and
Marcin Kosin\acute ski and
Bernd Bischl and
Stefan Rödiger Conference Report: Why R? 2018 . . . . . 572--578
Joseph Rickert Conference Report: R / Pharma 2018 . . . 579--580
Joseph Rickert and
Naras Balasubramanian and
Michael Kane Conference Report: R / Medicine Report 581--582
Torsten Hothorn R Foundation News . . . . . . . . . . . 583--583
Kurt Hornik and
Uwe Ligges and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 584--586
Bioconductor Core Team News from the Bioconductor Project . . . 587--587
The R Core Team Changes in R . . . . . . . . . . . . . . 588--590
Norm Matloff Editorial . . . . . . . . . . . . . . . 4--6
Massimo Cannas and
Bruno Arpino Matching with Clustered Data: the
\pkgCMatching Package in R . . . . . . . 7--21
Alexis Sardá-Espinosa Time-Series Clustering in R Using the
\pkgdtwclust Package . . . . . . . . . . 22--43
Charlotte Dion and
Simone Hermann and
Adeline Samson \pkgmixedsde: a Package to Fit Mixed
Stochastic Differential Equations . . . 44--66
Emilio Sansano and
Raúl Montoliu and
Óscar Belmonte and
Joaquín Torres-Sospedra Indoor Positioning and Fingerprinting:
The R Package \pkgipft . . . . . . . . . 67--90
Lu Ou and
Michael D. Hunter and
Sy-Miin Chow Whats for dynr: a Package for Linear and
Nonlinear Dynamic Modeling in R . . . . 91--111
Mengyang Gu and
Jesus Palomo and
James O. Berger \pkgRobustGaSP: Robust Gaussian
Stochastic Process Emulation in R . . . 112--136
Armin Ströbel \pkgatable: Create Tables for Clinical
Trial Reports . . . . . . . . . . . . . 137--148
Gianmarco Vacca and
Maria Grazia Zoia Identifying and Testing Recursive vs.
Interdependent Links in Simultaneous
Equation Models via the \pkgSIRE Package 149--169
Josue M. Polanco-Martinez and
Martin A. Medina-Elizalde and
Maria Fernanda Sanchez Goni and
Manfred Mudelsee \pkgBINCOR: an R package for Estimating
the Correlation between Two Unevenly
Spaced Time Series . . . . . . . . . . . 170--184
Diego Moretti and
Luca Valentino and
Tiziana Tuoto Optimization Routines for Enforcing
One-to-One Matches in Record Linkage
Problems . . . . . . . . . . . . . . . . 185--197
Maria Brigida Ferraro and
Paolo Giordani and
Alessio Serafini \pkgfclust: an R Package for Fuzzy
Clustering . . . . . . . . . . . . . . . 198--210
Rados\law Piliszek and
Krzysztof Mnich and
Szymon Migacz and
Pawe\l Tabaszewski and
Andrzej Su\lecki and
Aneta Polewko-Klim and
Witold Rudnicki \pkgMDFS: MultiDimensional Feature
Selection in R . . . . . . . . . . . . . 198--229
Serge de Valk and
Daiane de Mattos and
Pedro Ferreira \pkgNowcasting: an R Package for
Predicting Economic Variables Using
Dynamic Factor Models . . . . . . . . . 230--244
Michael Kipp and
Ursula Laa and
Dianne Cook Connecting R with D3 for dynamic
graphics, to explore multivariate data
with tours . . . . . . . . . . . . . . . 245--249
Allison Fialkowski and
Hemant Tiwari \pkgSimCorrMix: Simulation of Correlated
Data with Multiple Variable Types
Including Continuous and Count Mixture
Distributions . . . . . . . . . . . . . 250--286
Michael Dorman and
Evyatar Erell and
Adi Vulkan and
Itai Kloog \pkgshadow: R Package for Geometric
Shadow Calculations in an Urban
Environment . . . . . . . . . . . . . . 287--309
Claudia Cava and
Isabella Castiglioni Integration of networks and pathways
with \pkgStarBioTrek package . . . . . . 310--322
Rheanna Mainzer and
Paul Kabaila \pkgciuupi: an R package for Computing
Confidence Intervals that Utilize
Uncertain Prior Information . . . . . . 323--336
Di Shu and
Grace Y. Yi \pkgipwErrorY: an R Package for
Estimation of Average Treatment Effect
with Misclassified Binary Outcome . . . 337--351
Florian Gerber and
Reinhard Furrer \pkgoptimParallel: an R Package
Providing a Parallel Version of the
L-BFGS-B Optimization Method . . . . . . 352--358
Stuart Baumann and
Margaryta Klymak Fixed Point Acceleration in R . . . . . 359--375
Danilo Alvares and
Sebastien Haneuse and
Catherine Lee and
Kyu Ha Lee \pkgSemiCompRisks: an R Package for the
Analysis of Independent and
Cluster-correlated Semi-competing Risks
Data . . . . . . . . . . . . . . . . . . 376--400
Busra Sevinc and
Bekir Cetintav and
Melek Esemen and
Selma Gurler \pkgRSSampling: a Pioneering Package for
Ranked Set Sampling . . . . . . . . . . 401--415
Juan Xiong and
Grace Y. Yi \pkgswgee: an R Package for Analyzing
Longitudinal Data with Response
Missingness and Covariate Measurement
Error . . . . . . . . . . . . . . . . . 416--426
Pere J. Ferrando and
Urbano Lorenzo-Seva and
David Navarro-Gonzalez \pkgunival: an FA-based R Package For
Assessing Essential Unidimensionality
Using External Validity Information . . 427--436
Kurt Hornik and
Uwe Ligges and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 438--440
The R Core Team R News . . . . . . . . . . . . . . . . . 442--582
Torsten Hothorn R Foundation News . . . . . . . . . . . 583--583
Michael J. Kane Editorial . . . . . . . . . . . . . . . 4--5
Jan-Philipp Kolb Using Web Services to Work with Geodata
in R . . . . . . . . . . . . . . . . . . 6--23
Ruoqing Zhu and
Jiyang Zhang and
Ruilin Zhao and
Peng Xu and
Wenzhuo Zhou and
Xin Zhang \pkgorthoDr: Semiparametric Dimension
Reduction via Orthogonality Constrained
Optimization . . . . . . . . . . . . . . 24--37
Jonathan Kropko and
Jeffrey J. Harden \pkgcoxed: an R Package for Computing
Duration-Based Quantities from the Cox
Proportional Hazards Model . . . . . . . 38--45
Eric J. Ward and
Sean C. Anderson and
Luis A. Damiano and
Mary E. Hunsicker and
Michael A. Litzow Modeling regimes with extremes: the
\pkgbayesdfa package for identifying and
forecasting common trends and anomalies
in multivariate time-series data . . . . 46--55
Joan del Castillo and
Isabel Serra and
Maria Padilla and
David Moriña Fitting Tails by the Empirical Residual
Coefficient of Variation: The \pkgercv
Package . . . . . . . . . . . . . . . . 56--68
John Reisner and
Hieu Pham and
Sigurdur Olafsson and
Stephen Vardeman and
Jing Li \pkgbiclustermd: an R Package for
Biclustering with Missing Values . . . . 69--84
Alicja Gosiewska and
Przemys\law Biecek \pkgauditor: an R Package for
Model-Agnostic Visual Validation and
Diagnostics . . . . . . . . . . . . . . 85--98
Lily Medina and
Ann-Kristin Kreutzmann and
Natalia Rojas-Perilla and
Piedad Castro The R Package \pkgtrafo for Transforming
Linear Regression Models . . . . . . . . 99--123
Wadim Djatschenko \pkgBondValuation: an R Package for
Fixed Coupon Bond Analysis . . . . . . . 124--141
Roberto Sichera and
Pietro Pizzuto \pkgConvergenceClubs: a Package for
Performing the Phillips and Sul's Club
Convergence Clustering Procedure . . . . 142--151
David P. Hofmeyr and
Nicos G. Pavlidis \pkgPPCI: an R Package for Cluster
Identification using Projection Pursuit 152--170
Hyowon An and
Justin T. Landis and
Aubrey G. Bailey and
James S. Marron and
Dirk P. Dittmer \pkgdr4pl: a Stable Convergence
Algorithm for the 4 Parameter Logistic
Model . . . . . . . . . . . . . . . . . 171--190
Hengshi Yu and
Fan Li and
John A. Gallis and
Elizabeth L. Turner \pkgcvcrand: a Package for
Covariate-constrained Randomization and
the Clustered Permutation Test for
Cluster Randomized Trials . . . . . . . 191--204
Matteo Quartagno and
Simon Grund and
James Carpenter \pkgjomo: a Flexible Package for
Two-level Joint Modelling Multiple
Imputation . . . . . . . . . . . . . . . 205--228
Francisco Martínez and
María P. Frías and
Francisco Charte and
Antonio J. Rivera Time Series Forecasting with KNN in R:
the \pkgtsfknn Package . . . . . . . . . 229--242
Kasey Jones and
Rob Chew and
Allison Witman and
Yiyan Liu \pkgrollmatch: an R Package for Rolling
Entry Matching . . . . . . . . . . . . . 243--253
Michael Hahsler and
Ian Johnson and
Tomá\vs Kliegr and
Jaroslav Kuchar\check Associative Classification in R:
\pkgarc, \pkgarulesCBA, and \pkgrCBA . . 254--290
Francesca Ieva and
Anna Maria Paganoni and
Juan Romo and
Nicholas Tarabelloni \pkgroahd Package: Robust Analysis of
High Dimensional Data . . . . . . . . . 291--307
John R. Giles and
Henrik Salje and
Justin Lessler The \pkgIDSpatialStats R Package:
Quantifying Spatial Dependence of
Infectious Disease Spread . . . . . . . 308--327
Toby Dylan Hocking Comparing \pkgnamedCapture with other R
packages for regular expressions . . . . 328--346
Mateusz Staniak and
Przemys\law Biecek The Landscape of R Packages for
Automated Exploratory Data Analysis . . 347--369
Henrique Hoeltgebaum and
Heather Battey \pkgHCmodelSets: an R Package for
Specifying Sets of Well-fitting Models
in High Dimensions . . . . . . . . . . . 370--379
Sarah Friedrich and
Frank Konietschke and
Markus Pauly Resampling-Based Analysis of
Multivariate Data and Repeated Measures
Designs with the R Package \pkgMANOVA.RM 380--400
Philipp Otto \pkgspGARCH: an R-Package for Spatial
and Spatiotemporal ARCH and GARCH models 401--420
Philipp Adämmer \pkglpirfs: an R Package to Estimate
Impulse Response Functions by Local
Projections . . . . . . . . . . . . . . 421--438
Marcela Alfaro Córdoba and
Frans van Dunné and
Agustín Gómez Meléndez and
Jacob van Etten Conference: Report ConectaR 2019 . . . . 439--442
Torsten Hothorn R Foundation News . . . . . . . . . . . 443--443
Kurt Hornik and
Uwe Ligges and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 444--446
Bioconductor Core Team News from the Bioconductor Project . . . 447--447
The R Core Team R News . . . . . . . . . . . . . . . . . 448--554
Michael J. Kane Editorial . . . . . . . . . . . . . . . 4--5
Dennis Prangle \pkggk: an R Package for the $g$-and-$k$
and Generalised $g$-and-$h$
Distributions . . . . . . . . . . . . . 7--20
Youssef Hmamouche \pkgNlinTS: an R Package For Causality
Detection in Time Series . . . . . . . . 21--31
Lu Bai and
Daniel L. Gillen and
Scott M. Bartell and
Verónica M. Vieira Mapping Smoothed Spatial Effect
Estimates from Individual-Level Data:
\pkgMapGAM . . . . . . . . . . . . . . . 32--48
Spyros E. Balafas and
Wim P. Krijnen and
Wendy J. Post and
Ernst C. Wit \pkgmudfold: an R Package for
Nonparametric IRT Modelling of Unfolding
Processes . . . . . . . . . . . . . . . 49--75
Francisco Bischoff and
Pedro Pereira Rodrigues \pkgtsmp: an R Package for Time Series
with Matrix Profile . . . . . . . . . . 76--86
Vineetha Warriyar K. V. and
Waleed Almutiry and
Rob Deardon Individual-Level Modelling of Infectious
Disease Data: EpiILM . . . . . . . . . . 87--104
Emily Morris and
Kevin He and
Yanming Li and
Yi Li and
Jian Kang \pkgSurvBoost: an R Package for
High-Dimensional Variable Selection in
the Stratified Proportional Hazards
Model via Gradient Boosting . . . . . . 105--117
Chi Hyun Lee and
Heng Zhou and
Jing Ning and
Diane D. Liu and
Yu Shen \pkgCoxPhLb: an R Package for Analyzing
Length Biased Data under Cox Model . . . 118--130
Shuowen Chen and
Victor Chernozhukov and
Iván Fernández-Val and
Ye Luo \pkgSortedEffects: Sorted Causal Effects
in R . . . . . . . . . . . . . . . . . . 131--146
Bulent Altunkaynak and
Hamza Gamgam \pkgnpordtests: an R Package of
Nonparametric Tests for Equality of
Location Against Ordered Alternatives 147--171
Matias D. Cattaneo and
Max H. Farrell and
Yingjie Feng \pkglspartition: Partitioning-Based
Least Squares Regression . . . . . . . . 172--187
R. Douglas Martin and
Chindhanai Uthaisaad and
Daniel Z. Xia Skew-$t$ Expected Information Matrix
Evaluation and Use for Standard Error
Calculations . . . . . . . . . . . . . . 188--205
Daniel Fryer and
Ming Li and
Andriy Olenko \pkgrcosmo: R Package for Analysis of
Spherical, \pkgHEALPix and Cosmological
Data . . . . . . . . . . . . . . . . . . 206--225
Lucy D'Agostino McGowan and
Sean Kross and
Jeffrey Leek Tools for Analyzing R Code the Tidy Way 226--242
Nicholas Spyrison and
Dianne Cook \pkgspinifex: an R Package for Creating
a Manual Tour of Low-dimensional
Projections of Multivariate Data . . . . 243--257
Sean Kross and
Jeffrey T. Leek and
John Muschelli \pkgari: The Automated R Instructor . . 258--265
Tao Sun and
Ying Ding \pkgCopulaCenR: Copula based Regression
Models for Bivariate Censored Data in R 266--282
Lukas Sablica and
Kurt Hornik \pkgmistr: a Computational Framework for
Mixture and Composite Distributions . . 283--299
Adéla Hladká and
Patrícia Martinková \pkgdifNLR: Generalized Logistic
Regression Models for DIF and DDF
Detection . . . . . . . . . . . . . . . 300--323
Òystein Sòrensen and
Marta Crispino and
Qinghua Liu and
Valeria Vitelli \pkgBayesMallows: an R Package for the
Bayesian Mallows Model . . . . . . . . . 324--342
Brandon M. Greenwell and
Bradley C. Boehmke Variable Importance Plots --- an
Introduction to the \pkgvip Package . . 343--366
Maciej Bartoszuk and
Marek Gagolewski \pkgSimilaR: R Code Clone and Plagiarism
Detection . . . . . . . . . . . . . . . 367--385
Stepan Mazur and
Dmitry Otryakhin Linear Fractional Stable Motion with the
\pkgrlfsm R Package . . . . . . . . . . 386--405
M. Rueda and
R. Ferri-García and
L. Castro The R package \pkgNonProbEst for
estimation in non-probability surveys 406--418
Juan Carlos Gonçalves-Dosantos and
Ignacio García-Jurado and
Julián Costa \pkgProjectManagement: an R Package for
Managing Projects . . . . . . . . . . . 419--436
Daniel Nüst and
Dirk Eddelbuettel and
Dom Bennett and
Robrecht Cannoodt and
Dav Clark and
Gergely Daróczi and
Mark Edmondson and
Colin Fay and
Ellis Hughes and
Lars Kjeldgaard and
Sean Lopp and
Ben Marwick and
Heather Nolis and
Jacqueline Nolis and
Hong Ooi and
Karthik Ram and
Noam Ross and
Lori Shepherd and
Péter Sólymos and
Tyson Lee Swetnam and
Nitesh Turaga and
Charlotte Van Petegem and
Jason Williams and
Craig Willis and
Nan Xiao The Rockerverse: Packages and
Applications for Containerisation with R 437--461
John M. Chambers \pkgS, R, and Data Science . . . . . . . 462--476
John C. Nash Provenance of R's Gradient Optimizers 477--483
Micha\l Burdukiewicz and
Filip Pietluch and
Jaros\law Chilimoniuk and
Katarzyna Sidorczuk and
Dominik Rafacz and
Leon Eyrich Jessen and
Stefan Rödiger and
Marcin Kosin \acute ski and
Piotr Wójcik Conference Report: Why R? 2019 . . . . . 484--484
Kurt Hornik and
Uwe Ligges and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 485--497
Torsten Hothorn R Foundation News . . . . . . . . . . . 498--498
Michael J. Kane Editorial . . . . . . . . . . . . . . . 4--5
Yaohui Zeng and
Patrick Breheny The \pkgbiglasso Package: a Memory- and
Computation-Efficient Solver for Lasso
Model Fitting with Big Data in R . . . . 6--19
Hsin-wen Chang and
Pei-Yuan Tsai and
Jen-Tse Kao and
Guo-You Lan Comparing Multiple Survival Functions
with Crossing Hazards in R . . . . . . . 20--42
Dongshin Kim and
Sangin Lee and
Sunghoon Kwon A Unified Algorithm for the Non-Convex
Penalized Estimation: The \pkgncpen
Package . . . . . . . . . . . . . . . . 43--60
Yuqing Pan and
Qing Mai and
Xin Zhang \pkgTULIP: a Toolbox for Linear
Discriminant Analysis with Penalties . . 61--81
Robert Nguyen and
James Day and
David Warton and
Oscar Lane \pkgfitzRoy --- An R Package to
Encourage Reproducible Sports Analysis 82--106
Mario González-Sales and
Olivier Barri\`ere and
Pierre Olivier Tremblay and
Guillaume Bonnefois and
Julie Desrochers and
Fahima Nekka Assembling Pharmacometric Datasets in R
--- The \pkgpuzzle Package . . . . . . . 107--119
Hesen Li and
Hakan Demirtas and
Ruizhe Chen \pkgRNGforGPD: an R Package for
Generation of Univariate and
Multivariate Generalized Poisson Data 120--133
Mustafa Cavus and
Berna Yaz\i c\i Testing the equality of normal
distributed and independent groups'
means under unequal variances by
\pkgdoex package . . . . . . . . . . . . 134--154
Peter Kasprzak and
Lachlan Mitchell and
Olena Kravchuk and
Andy Timmins Six Years of \pkgShiny in Research ---
Collaborative Development of Web Tools
in R . . . . . . . . . . . . . . . . . . 155--162
Eric S. Kawaguchi and
Jenny I. Shen and
Gang Li and
Marc A. Suchard A Fast and Scalable Implementation
Method for Competing Risks Data with the
R Package \pkgfastcmprsk . . . . . . . . 163--172
Margot Selosse and
Julien Jacques and
Christophe Biernacki \pkgordinalClust: an R Package to
Analyze Ordinal Data . . . . . . . . . . 173--188
Catherine Schramm and
Sébastien Jacquemont and
Karim Oualkacha and
Aurélie Labbe and
Celia M. T. Greenwood \pkgKSPM: a Package For Kernel
Semi-Parametric Models . . . . . . . . . 189--208
Raymond Lagonigro and
Ramon Oller and
Joan Carles Martori \pkgAQuadtree: an R Package for Quadtree
Anonymization of Point Data . . . . . . 209--225
Paul M. Hargarten and
David C. Wheeler \pkgmiWQS: Multiple Imputation Using
Weighted Quantile Sum Regression . . . . 226--250
Patrick Lloyd-Smith Kuhn--Tucker and Multiple
Discrete-Continuous Extreme Value Model
Estimation and Simulation in R: The
\pkgrmdcev Package . . . . . . . . . . . 251--265
Xialu Liu and
Rong Chen and
Ruey Tsay \pkgNTS: an R Package for Nonlinear Time
Series Analysis . . . . . . . . . . . . 266--292
Paula Moraga Species Distribution Modeling using
Spatial Point Processes: a Case Study of
Sloth Occurrence in Costa Rica . . . . . 293--310
Pere Millán-Martínez and
Ramon Oller A Graphical EDA Tool with \pkgggplot2:
\pkgbrinton . . . . . . . . . . . . . . 311--320
Inmaculada Pérez-Bernabé and
Ana D. Maldonado and
Antonio Salmerón and
Thomas D. Nielsen \pkgMoTBFs: an R Package for Learning
Hybrid Bayesian Networks Using Mixtures
of Truncated Basis Functions . . . . . . 321--341
Michael J. Kane and
Nan Chen and
Alexander M. Kaizer and
Xun Jiang and
H. Amy Xia and
Brian P. Hobbs Analyzing Basket Trials under
Multisource Exchangeability Assumptions 342--358
Reginal Exavier and
Peter Zeilhofer \pkgOpenLand: Software for Quantitative
Analysis and Visualization of Land Use
and Cover Change . . . . . . . . . . . . 359--371
Koushiki Bose and
Jianqing Fan and
Yuan Ke and
Xiaoou Pan and
Wen-Xin Zhou \pkgFarmTest: an R Package for
Factor-Adjusted Robust Multiple Testing 372--387
Genaro Sucarrat User-Specified General-to-Specific and
Indicator Saturation Methods . . . . . . 388--401
Tomas Kalibera and
Sebastian Meyer and
Kurt Hornik Changes in R 3.6--4.0 . . . . . . . . . 402--406
Kurt Hornik and
Uwe Ligges and
Achim Zeileis Changes on CRAN . . . . . . . . . . . . 407--409
Bioconductor Core Team News from the Bioconductor Project . . . 410--410
Heather Turner News from the Forwards Taskforce . . . . 411--412
Torsten Hothorn R Foundation News . . . . . . . . . . . 413--416
Mariachiara Fortuna and
Francesca Vitalini and
Mirko Signorelli and
Emanuela Furfaro and
Federico Marini and
Gert Janssenswillen' and
Riccardo Porreca and
Riccardo L. Rossi and
Andrea Guzzo and
Roberta Sirovich and
Andrea Melloncelli and
Lorenzo Salvi and
Serena Signorelli and
Filippo Chiarello \pkge-Rum2020: how we turned a physical
conference into a successful virtual
event . . . . . . . . . . . . . . . . . 417--425